RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6711
(135 letters)
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 191
Score = 86.5 bits (215), Expect = 2e-22
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGT 70
Q+AV K + FF+ AP T+ID GD I++EER +E V G + +
Sbjct: 76 QLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILN 135
Query: 71 FQSHS 75
Sbjct: 136 ESGEP 140
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 87.7 bits (218), Expect = 7e-22
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDC 65
+AV AK + +PF++AAP ++ID I +G+ I IEER +E+TH G +A
Sbjct: 252 SLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGV 306
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 88.2 bits (219), Expect = 8e-22
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDC 65
+A+ A +PFF+AAP ++ D + G I IEER +E+ ++G+ A S+
Sbjct: 277 GLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNV 331
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 86.9 bits (216), Expect = 2e-21
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV--AGIHVAASDCGSK 68
+AVSAK H V ++AAP T++D+ +G+ + IEER E+T V A
Sbjct: 281 NLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLS 340
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 86.2 bits (214), Expect = 3e-21
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
IA++AK H+V IAA + G + IE R E+ + +
Sbjct: 234 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKN 287
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 81.2 bits (201), Expect = 2e-19
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
++V AKHH +PF++AAP + D + +VIEERP +E+ +A +
Sbjct: 249 TVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLN 301
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 66.5 bits (163), Expect = 2e-14
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV 55
+A++ + +PF++AA + +GD +++E + +
Sbjct: 202 LLALACHENAIPFYVAAETYKFHPTLKSGDVMLMERDLIRGNVRI 246
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 55.8 bits (135), Expect = 2e-10
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 11 QIAVSAKHHKVPFFIAAPWTSIDLDIP-NGDAIVIEERPSQEMTHVAG 57
Q+AV AK PF++ A P N + + + + VA
Sbjct: 214 QMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQ 261
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 26.0 bits (57), Expect = 5.6
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 53 THVAGIHVAASDCGSKGTF 71
THVA I A + S G +
Sbjct: 182 THVASI-AAGTGAASNGKY 199
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 25.4 bits (56), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 53 THVAGIHVAASDCGSKGT 70
THVAG VAA++ GS
Sbjct: 88 THVAGT-VAAAETGSGVV 104
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 25.4 bits (55), Expect = 8.7
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 53 THVAGIHVAASD 64
THVAG +AA
Sbjct: 202 THVAGT-IAAKK 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,149,867
Number of extensions: 118549
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 23
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)