RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6711
         (135 letters)



>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
           isomerase Ypr118W {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 402

 Score = 59.5 bits (143), Expect = 4e-12
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 8   WNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGS 67
             LQ+AV  K   + FF+ AP T+ID     GD I++EER  +E   V G  +   + GS
Sbjct: 284 GTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPEN-GS 342

Query: 68  KGTFQSHSGSINKVEDLPE 86
               +S      KV   P 
Sbjct: 343 LILNESGEPITGKVGIAPL 361


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 55.9 bits (134), Expect = 9e-11
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAG 57
            +AVSAK H V  ++AAP T++D+   +G+ + IEER   E+T    
Sbjct: 272 NLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLV 318


>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
           isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
          Length = 340

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 6   IKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
                 +AV AK + +PF++AAP ++ID  I +G+ I IEER  +E+TH  G  +A   
Sbjct: 243 KIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEG 301


>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 340

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            ++V AKHH +PF++AAP  + D +      +VIEERP +E+       +A  +
Sbjct: 248 TVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLN 300


>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 78

 Score = 23.5 bits (50), Expect = 5.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 34 LDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKV 81
          L++ +G    I E    ++T  +   V   +  ++GT+Q++  SINKV
Sbjct: 15 LNLRDGKTYTISEDERADITLKSLGEVIHLEQNNQGTWQANHTSINKV 62


>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
           2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 378

 Score = 23.7 bits (51), Expect = 8.4
 Identities = 4/30 (13%), Positives = 13/30 (43%)

Query: 72  QSHSGSINKVEDLPEMSIVELEDVKIIQDD 101
           ++     +K++   +  +V  E +  +  D
Sbjct: 35  EAQHIEWSKIQTPTDEIVVPYEKMTPVSQD 64


>d2j2za2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}
          Length = 93

 Score = 22.9 bits (49), Expect = 8.5
 Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 11 QIAVSAKHHKVPFF---IAAPWTSIDLDIPNGDAIVI 44
           +  S K  +   F   + +P +   +   N +   +
Sbjct: 31 GLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYL 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 522,720
Number of extensions: 21834
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 11
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)