Query psy6712
Match_columns 210
No_of_seqs 147 out of 1625
Neff 9.8
Searched_HMMs 46136
Date Sat Aug 17 01:06:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 9.2E-45 2E-49 274.5 18.0 201 1-201 122-398 (400)
2 KOG0330|consensus 100.0 2.7E-44 5.9E-49 281.9 17.3 199 1-199 156-430 (476)
3 KOG0331|consensus 100.0 9.9E-44 2.1E-48 292.8 19.3 201 2-202 193-474 (519)
4 COG0513 SrmB Superfamily II DN 100.0 2.7E-41 5.8E-46 286.2 20.3 192 2-193 128-398 (513)
5 KOG0326|consensus 100.0 1.9E-41 4E-46 260.5 13.1 203 1-203 180-456 (459)
6 PRK04837 ATP-dependent RNA hel 100.0 2.6E-40 5.6E-45 275.9 20.6 204 1-204 110-390 (423)
7 KOG0333|consensus 100.0 6.3E-40 1.4E-44 265.6 17.4 189 1-189 349-637 (673)
8 PTZ00110 helicase; Provisional 100.0 4.7E-39 1E-43 274.7 20.4 201 2-202 231-510 (545)
9 PRK11776 ATP-dependent RNA hel 100.0 1.8E-38 3.8E-43 267.5 22.2 197 2-198 101-371 (460)
10 KOG0342|consensus 100.0 3.6E-39 7.8E-44 259.5 17.0 195 2-199 183-457 (543)
11 PRK10590 ATP-dependent RNA hel 100.0 2.8E-38 6E-43 265.7 22.1 196 1-196 102-372 (456)
12 KOG0336|consensus 100.0 1.5E-39 3.4E-44 257.1 11.2 203 2-204 321-600 (629)
13 KOG0341|consensus 100.0 1.8E-39 4E-44 255.3 11.0 202 3-204 281-557 (610)
14 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-38 1.3E-42 267.0 20.9 200 2-201 224-500 (518)
15 PRK11634 ATP-dependent RNA hel 100.0 9.9E-38 2.1E-42 269.2 22.2 199 2-200 103-376 (629)
16 PRK11192 ATP-dependent RNA hel 100.0 1.8E-37 3.8E-42 259.8 22.7 194 1-194 100-370 (434)
17 PRK04537 ATP-dependent RNA hel 100.0 1.3E-37 2.8E-42 266.8 22.2 199 1-199 111-387 (572)
18 KOG0338|consensus 100.0 2.7E-38 5.8E-43 255.6 16.8 186 2-187 280-544 (691)
19 KOG0335|consensus 100.0 2.1E-38 4.5E-43 257.7 15.7 200 2-201 180-469 (482)
20 KOG0340|consensus 100.0 4.2E-38 9E-43 244.7 15.9 201 1-201 102-386 (442)
21 KOG0345|consensus 100.0 1.4E-37 3.1E-42 249.2 18.2 183 2-184 108-372 (567)
22 PRK01297 ATP-dependent RNA hel 100.0 3.3E-36 7.2E-41 254.4 22.8 206 1-207 189-472 (475)
23 PTZ00424 helicase 45; Provisio 100.0 3E-36 6.5E-41 250.1 21.4 200 2-201 124-399 (401)
24 KOG0339|consensus 100.0 3.3E-36 7.1E-41 243.5 16.9 203 1-203 323-602 (731)
25 KOG0343|consensus 100.0 4.9E-36 1.1E-40 244.5 17.9 196 2-199 169-445 (758)
26 KOG0348|consensus 100.0 2.2E-35 4.8E-40 239.8 16.5 187 4-190 242-568 (708)
27 KOG0347|consensus 100.0 1.5E-35 3.3E-40 241.5 14.6 192 2-193 291-587 (731)
28 KOG0327|consensus 100.0 1.2E-34 2.6E-39 227.5 17.0 202 1-202 121-396 (397)
29 KOG4284|consensus 100.0 3.2E-33 7E-38 231.6 17.9 182 2-184 122-388 (980)
30 KOG0350|consensus 100.0 2.8E-32 6.2E-37 220.2 15.5 188 2-189 243-553 (620)
31 PLN03137 ATP-dependent DNA hel 100.0 1.5E-31 3.2E-36 236.7 19.1 184 1-184 523-795 (1195)
32 KOG0332|consensus 100.0 7.2E-32 1.6E-36 211.2 14.0 173 25-197 208-465 (477)
33 KOG0334|consensus 100.0 1.2E-31 2.7E-36 232.3 13.0 202 1-202 465-746 (997)
34 TIGR00614 recQ_fam ATP-depende 100.0 9.6E-31 2.1E-35 220.7 17.2 184 1-184 74-341 (470)
35 KOG0346|consensus 100.0 5.6E-31 1.2E-35 210.0 14.0 188 4-191 125-425 (569)
36 TIGR03817 DECH_helic helicase/ 100.0 3E-30 6.6E-35 226.7 16.8 195 2-198 108-410 (742)
37 PRK11057 ATP-dependent DNA hel 100.0 1.2E-29 2.6E-34 219.5 18.6 183 1-183 88-350 (607)
38 TIGR01389 recQ ATP-dependent D 100.0 1E-29 2.2E-34 220.0 17.4 182 1-182 76-337 (591)
39 COG0514 RecQ Superfamily II DN 100.0 3.4E-29 7.5E-34 210.3 17.1 186 1-186 80-347 (590)
40 KOG0337|consensus 100.0 2.9E-30 6.2E-35 205.0 8.4 193 2-194 118-386 (529)
41 KOG0344|consensus 100.0 4.8E-29 1E-33 205.1 12.2 175 22-196 260-515 (593)
42 KOG0329|consensus 100.0 1.3E-28 2.8E-33 184.8 10.9 193 2-198 139-378 (387)
43 PRK13767 ATP-dependent helicas 100.0 1.1E-27 2.5E-32 214.0 18.8 173 2-174 124-396 (876)
44 PRK09751 putative ATP-dependen 100.0 2.3E-27 5E-32 216.9 21.0 194 2-196 77-407 (1490)
45 KOG0349|consensus 100.0 4E-27 8.7E-32 188.2 15.1 204 3-206 318-677 (725)
46 PRK10917 ATP-dependent DNA hel 99.9 1.5E-25 3.2E-30 196.2 20.0 170 1-175 337-588 (681)
47 PRK02362 ski2-like helicase; P 99.9 7.4E-26 1.6E-30 200.2 17.0 173 2-177 94-398 (737)
48 TIGR00580 mfd transcription-re 99.9 2.3E-25 4.9E-30 198.4 18.7 169 2-176 528-770 (926)
49 TIGR00643 recG ATP-dependent D 99.9 3.8E-25 8.2E-30 192.3 19.5 169 1-174 311-564 (630)
50 COG1111 MPH1 ERCC4-like helica 99.9 5.7E-25 1.2E-29 178.8 17.2 94 82-176 379-481 (542)
51 PRK10689 transcription-repair 99.9 1.3E-24 2.8E-29 197.3 20.3 168 2-175 677-918 (1147)
52 PRK00254 ski2-like helicase; P 99.9 7.1E-25 1.5E-29 193.5 17.4 174 1-177 94-389 (720)
53 COG1201 Lhr Lhr-like helicases 99.9 2.8E-24 6.2E-29 186.7 17.0 175 1-175 100-361 (814)
54 TIGR02621 cas3_GSU0051 CRISPR- 99.9 5.4E-24 1.2E-28 185.9 16.9 161 2-173 113-388 (844)
55 PRK01172 ski2-like helicase; P 99.9 1.9E-23 4.1E-28 183.5 15.6 183 1-189 91-389 (674)
56 PRK09200 preprotein translocas 99.9 3.8E-23 8.2E-28 180.3 16.9 95 82-178 441-543 (790)
57 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.6E-23 1E-27 182.0 16.7 156 22-179 88-339 (819)
58 KOG0351|consensus 99.9 2.7E-23 5.9E-28 183.7 14.4 184 2-185 328-601 (941)
59 TIGR00963 secA preprotein tran 99.9 5.8E-22 1.3E-26 170.8 19.1 97 82-180 418-521 (745)
60 TIGR03714 secA2 accessory Sec 99.9 3.8E-22 8.2E-27 172.8 17.7 95 82-179 437-540 (762)
61 PHA02653 RNA helicase NPH-II; 99.9 6.2E-22 1.3E-26 171.4 15.3 173 2-185 253-523 (675)
62 PRK11664 ATP-dependent RNA hel 99.9 3.9E-22 8.5E-27 176.4 14.2 169 2-178 77-341 (812)
63 PHA02558 uvsW UvsW helicase; P 99.9 1.4E-21 3.1E-26 166.1 16.6 86 82-167 357-443 (501)
64 PRK13766 Hef nuclease; Provisi 99.9 8.8E-21 1.9E-25 169.2 20.4 94 82-176 378-479 (773)
65 PRK12898 secA preprotein trans 99.9 1.9E-20 4.2E-25 160.4 17.2 95 82-178 486-588 (656)
66 KOG0352|consensus 99.9 7.2E-21 1.6E-25 152.3 13.0 103 82-184 268-370 (641)
67 PRK14701 reverse gyrase; Provi 99.9 5.9E-21 1.3E-25 177.6 13.9 169 2-177 152-457 (1638)
68 PF00271 Helicase_C: Helicase 99.9 3.6E-21 7.9E-26 123.6 8.1 78 87-164 1-78 (78)
69 COG1204 Superfamily II helicas 99.9 3.3E-21 7.1E-26 169.0 10.4 172 1-175 102-407 (766)
70 COG1200 RecG RecG-like helicas 99.8 4.3E-20 9.4E-25 155.9 15.7 175 1-180 338-595 (677)
71 PRK09401 reverse gyrase; Revie 99.8 2.8E-20 6E-25 169.6 15.6 154 2-162 151-430 (1176)
72 COG1202 Superfamily II helicas 99.8 1.7E-21 3.6E-26 160.8 6.9 177 1-178 288-555 (830)
73 PRK11131 ATP-dependent RNA hel 99.8 2E-20 4.4E-25 169.4 13.0 153 22-178 161-413 (1294)
74 KOG0354|consensus 99.8 6.3E-20 1.4E-24 156.9 15.3 95 82-178 426-531 (746)
75 TIGR01587 cas3_core CRISPR-ass 99.8 8.2E-21 1.8E-25 155.5 9.0 92 82-176 235-336 (358)
76 PRK05580 primosome assembly pr 99.8 1.6E-19 3.5E-24 158.0 15.5 123 82-210 439-582 (679)
77 TIGR00595 priA primosomal prot 99.8 2.2E-19 4.7E-24 152.2 14.4 123 82-210 271-414 (505)
78 TIGR01967 DEAH_box_HrpA ATP-de 99.8 3.8E-19 8.1E-24 161.6 12.6 170 2-178 136-406 (1283)
79 COG1197 Mfd Transcription-repa 99.8 3.2E-18 7E-23 151.9 16.4 169 2-176 671-913 (1139)
80 PRK04914 ATP-dependent helicas 99.8 1.1E-18 2.5E-23 155.7 10.7 123 75-197 499-624 (956)
81 TIGR01054 rgy reverse gyrase. 99.8 1.1E-17 2.4E-22 152.9 15.7 135 7-148 157-409 (1171)
82 smart00490 HELICc helicase sup 99.8 5E-18 1.1E-22 109.5 8.7 81 84-164 2-82 (82)
83 TIGR00603 rad25 DNA repair hel 99.8 4.1E-17 8.8E-22 141.7 16.6 95 95-189 517-622 (732)
84 PRK12904 preprotein translocas 99.8 6.3E-17 1.4E-21 141.6 17.5 95 82-178 443-575 (830)
85 PRK13104 secA preprotein trans 99.8 6.3E-17 1.4E-21 141.9 17.2 95 82-178 457-589 (896)
86 cd00079 HELICc Helicase superf 99.7 8.7E-18 1.9E-22 118.0 8.0 102 71-172 30-131 (131)
87 KOG0353|consensus 99.7 1.6E-17 3.6E-22 131.7 10.3 182 1-182 157-473 (695)
88 TIGR00631 uvrb excinuclease AB 99.7 1E-17 2.2E-22 145.5 9.7 114 73-187 446-564 (655)
89 COG1205 Distinct helicase fami 99.7 2.7E-17 5.9E-22 146.2 12.5 188 2-189 145-437 (851)
90 PRK05298 excinuclease ABC subu 99.7 1.1E-17 2.5E-22 145.8 9.4 128 72-200 449-590 (652)
91 PRK12906 secA preprotein trans 99.7 1.2E-16 2.5E-21 139.4 14.0 95 82-178 453-555 (796)
92 KOG0952|consensus 99.7 1.4E-16 3E-21 139.2 10.6 88 95-182 398-497 (1230)
93 PLN03142 Probable chromatin-re 99.6 7.4E-15 1.6E-19 132.1 17.0 94 82-175 500-598 (1033)
94 PRK13107 preprotein translocas 99.6 7E-15 1.5E-19 129.0 14.4 95 82-178 462-593 (908)
95 TIGR03158 cas3_cyano CRISPR-as 99.6 2.2E-14 4.8E-19 117.3 14.4 71 82-161 285-357 (357)
96 COG4098 comFA Superfamily II D 99.6 5.3E-14 1.2E-18 110.4 15.7 99 82-182 318-422 (441)
97 COG1061 SSL2 DNA or RNA helica 99.6 6.6E-14 1.4E-18 117.4 13.8 81 82-163 296-376 (442)
98 KOG0951|consensus 99.6 6.6E-15 1.4E-19 130.7 7.7 82 94-175 608-701 (1674)
99 KOG0953|consensus 99.5 7.9E-14 1.7E-18 115.3 10.9 107 82-193 369-490 (700)
100 KOG0385|consensus 99.5 6.3E-13 1.4E-17 113.6 15.9 91 82-172 500-593 (971)
101 PRK12899 secA preprotein trans 99.5 1.3E-12 2.7E-17 115.3 16.1 95 82-178 581-683 (970)
102 PRK12900 secA preprotein trans 99.5 5.9E-14 1.3E-18 123.9 7.0 106 72-179 601-714 (1025)
103 PRK09694 helicase Cas3; Provis 99.5 4.9E-13 1.1E-17 119.2 12.9 81 82-165 573-664 (878)
104 COG0556 UvrB Helicase subunit 99.5 8.8E-14 1.9E-18 114.8 7.0 109 75-184 452-565 (663)
105 KOG0947|consensus 99.5 1.8E-13 3.9E-18 119.1 9.1 81 95-175 632-722 (1248)
106 KOG0950|consensus 99.5 2.9E-13 6.3E-18 118.0 10.2 91 94-184 523-619 (1008)
107 KOG0948|consensus 99.4 7.3E-14 1.6E-18 119.0 1.6 82 95-176 448-539 (1041)
108 COG1198 PriA Primosomal protei 99.4 2.4E-12 5.3E-17 112.1 8.8 123 82-210 493-636 (730)
109 KOG0384|consensus 99.4 2.4E-11 5.3E-16 108.4 14.7 104 82-185 712-822 (1373)
110 KOG0949|consensus 99.3 7.1E-12 1.5E-16 109.6 10.9 81 95-175 964-1047(1330)
111 COG1643 HrpA HrpA-like helicas 99.3 8.8E-12 1.9E-16 110.2 11.5 152 24-177 139-388 (845)
112 COG4581 Superfamily II RNA hel 99.3 9.3E-12 2E-16 111.1 10.3 80 96-175 447-536 (1041)
113 PRK11448 hsdR type I restricti 99.3 6.2E-11 1.3E-15 108.6 15.0 69 95-165 733-802 (1123)
114 KOG0922|consensus 99.3 2.1E-11 4.5E-16 103.2 9.7 96 82-178 271-392 (674)
115 KOG4150|consensus 99.3 1.2E-10 2.5E-15 97.4 12.5 102 96-197 560-663 (1034)
116 COG1110 Reverse gyrase [DNA re 99.2 5.4E-10 1.2E-14 98.7 15.1 61 82-147 351-416 (1187)
117 KOG0923|consensus 99.1 2.9E-10 6.2E-15 96.4 9.0 82 93-175 506-605 (902)
118 KOG0387|consensus 99.1 2.4E-09 5.1E-14 92.4 13.4 95 82-176 559-658 (923)
119 KOG0920|consensus 99.1 3.4E-10 7.3E-15 100.3 8.3 106 94-200 445-571 (924)
120 PRK12326 preprotein translocas 99.1 5.5E-09 1.2E-13 90.6 14.5 95 82-178 440-549 (764)
121 COG1203 CRISPR-associated heli 99.0 1.3E-09 2.9E-14 96.9 9.7 92 82-176 453-550 (733)
122 KOG0389|consensus 99.0 9E-09 1.9E-13 88.9 13.6 95 82-176 790-888 (941)
123 cd00268 DEADc DEAD-box helicas 99.0 8.3E-09 1.8E-13 77.9 11.8 91 2-106 97-187 (203)
124 PRK12903 secA preprotein trans 99.0 9.9E-09 2.1E-13 90.4 13.6 94 82-178 439-541 (925)
125 PRK13103 secA preprotein trans 99.0 5.9E-09 1.3E-13 92.4 11.3 95 82-178 462-593 (913)
126 KOG0924|consensus 99.0 2.9E-09 6.3E-14 90.7 8.2 93 82-175 580-696 (1042)
127 PF00270 DEAD: DEAD/DEAH box h 98.9 5E-09 1.1E-13 76.6 8.4 75 2-76 72-147 (169)
128 KOG0390|consensus 98.8 2.5E-08 5.4E-13 87.3 10.3 91 82-172 608-701 (776)
129 KOG1123|consensus 98.8 5.9E-07 1.3E-11 74.6 17.4 85 98-182 567-659 (776)
130 COG4889 Predicted helicase [Ge 98.7 4.1E-08 8.9E-13 86.1 8.0 72 94-165 500-574 (1518)
131 KOG1002|consensus 98.7 1.8E-06 3.9E-11 71.7 16.2 94 82-175 651-748 (791)
132 KOG0386|consensus 98.7 5E-07 1.1E-11 80.2 13.2 93 82-174 739-834 (1157)
133 KOG0392|consensus 98.7 4.3E-07 9.3E-12 82.0 12.8 78 98-175 1372-1453(1549)
134 KOG0926|consensus 98.7 2.9E-08 6.3E-13 86.1 5.2 82 94-176 605-704 (1172)
135 CHL00122 secA preprotein trans 98.6 1.1E-06 2.4E-11 78.0 14.5 59 1-61 144-209 (870)
136 PF06862 DUF1253: Protein of u 98.6 4.1E-06 8.9E-11 69.8 16.5 100 85-184 316-423 (442)
137 COG4096 HsdR Type I site-speci 98.5 6.5E-07 1.4E-11 78.3 9.9 67 95-163 457-525 (875)
138 PRK12902 secA preprotein trans 98.5 2.9E-06 6.2E-11 75.5 13.8 59 1-61 153-218 (939)
139 TIGR00348 hsdR type I site-spe 98.4 3E-05 6.5E-10 68.7 18.0 54 109-163 580-634 (667)
140 KOG1000|consensus 98.3 6.9E-06 1.5E-10 68.3 10.7 94 82-175 505-602 (689)
141 KOG0925|consensus 98.3 2.6E-06 5.6E-11 70.7 8.1 77 94-175 287-386 (699)
142 PRK12901 secA preprotein trans 98.3 1E-06 2.2E-11 79.2 5.4 98 79-178 638-743 (1112)
143 KOG0951|consensus 98.3 3.1E-06 6.8E-11 76.9 8.3 81 99-184 1411-1502(1674)
144 COG0553 HepA Superfamily II DN 98.3 3.9E-06 8.4E-11 76.4 8.6 106 71-176 713-822 (866)
145 TIGR02562 cas3_yersinia CRISPR 98.2 1.2E-05 2.5E-10 72.9 9.3 69 94-165 787-881 (1110)
146 KOG0388|consensus 98.1 2.1E-05 4.5E-10 68.2 8.7 87 82-168 1057-1144(1185)
147 smart00487 DEXDc DEAD-like hel 97.9 8.3E-05 1.8E-09 55.0 8.5 98 5-117 85-183 (201)
148 cd00046 DEXDc DEAD-like helica 97.8 9.5E-05 2.1E-09 51.4 7.4 64 3-66 58-121 (144)
149 TIGR01407 dinG_rel DnaQ family 97.7 0.00014 3E-09 66.4 8.3 96 77-175 682-813 (850)
150 PF13871 Helicase_C_4: Helicas 97.7 0.00016 3.4E-09 56.9 6.9 78 110-187 52-141 (278)
151 PF13307 Helicase_C_2: Helicas 97.6 8.9E-05 1.9E-09 54.3 4.9 96 76-175 16-149 (167)
152 smart00491 HELICc2 helicase su 97.6 0.00046 9.9E-09 49.1 8.3 42 106-147 31-79 (142)
153 KOG0391|consensus 97.6 0.00096 2.1E-08 61.2 11.8 95 82-176 1289-1387(1958)
154 smart00492 HELICc3 helicase su 97.6 0.00067 1.4E-08 48.2 8.9 49 99-147 27-78 (141)
155 COG0653 SecA Preprotein transl 97.5 0.00073 1.6E-08 60.2 9.2 92 82-177 442-546 (822)
156 KOG2340|consensus 97.5 0.0014 2.9E-08 55.5 10.2 92 89-180 572-672 (698)
157 PRK14873 primosome assembly pr 97.5 0.00034 7.3E-09 61.9 7.1 112 82-209 440-570 (665)
158 KOG4439|consensus 97.5 0.00091 2E-08 58.2 9.1 90 83-172 760-852 (901)
159 PF14617 CMS1: U3-containing 9 97.4 0.00024 5.3E-09 55.1 4.9 46 13-58 165-211 (252)
160 PRK08074 bifunctional ATP-depe 97.3 0.0011 2.4E-08 61.1 8.3 98 78-175 761-892 (928)
161 PRK07246 bifunctional ATP-depe 97.3 0.00091 2E-08 60.7 7.5 106 80-189 658-798 (820)
162 KOG1015|consensus 97.2 0.0011 2.3E-08 59.7 6.7 81 93-173 1188-1272(1567)
163 COG1199 DinG Rad3-related DNA 97.0 0.0038 8.3E-08 55.5 8.5 114 76-192 486-635 (654)
164 KOG0921|consensus 97.0 0.0008 1.7E-08 60.1 3.8 81 94-175 675-773 (1282)
165 PRK11747 dinG ATP-dependent DN 96.9 0.0057 1.2E-07 54.8 8.6 94 78-175 543-673 (697)
166 TIGR00604 rad3 DNA repair heli 96.2 0.027 5.8E-07 50.7 8.3 89 106-194 565-694 (705)
167 PF02399 Herpes_ori_bp: Origin 96.1 0.059 1.3E-06 48.4 10.0 88 82-176 295-388 (824)
168 TIGR03117 cas_csf4 CRISPR-asso 96.1 0.024 5.2E-07 50.0 7.5 95 79-175 480-615 (636)
169 KOG0701|consensus 96.1 0.004 8.6E-08 59.4 2.6 58 106-163 341-398 (1606)
170 PF10593 Z1: Z1 domain; Inter 95.5 0.12 2.5E-06 40.2 8.4 89 83-177 101-194 (239)
171 TIGR00596 rad1 DNA repair prot 95.3 0.062 1.3E-06 48.9 6.9 55 20-74 3-57 (814)
172 PF07517 SecA_DEAD: SecA DEAD- 95.2 0.08 1.7E-06 41.7 6.6 59 1-61 145-210 (266)
173 KOG1513|consensus 95.0 0.046 1E-06 48.9 5.1 75 112-186 850-936 (1300)
174 KOG3089|consensus 94.5 0.063 1.4E-06 40.6 4.2 43 14-56 185-228 (271)
175 PRK10917 ATP-dependent DNA hel 94.4 0.13 2.9E-06 46.1 6.8 60 84-143 329-389 (681)
176 COG1200 RecG RecG-like helicas 94.3 0.16 3.4E-06 44.8 6.8 61 82-142 328-389 (677)
177 PRK09401 reverse gyrase; Revie 94.1 0.36 7.8E-06 46.0 9.2 50 1-54 354-405 (1176)
178 KOG1016|consensus 93.5 0.18 3.9E-06 45.2 5.7 80 95-174 763-845 (1387)
179 TIGR00643 recG ATP-dependent D 93.4 0.26 5.7E-06 43.8 6.6 58 86-143 305-363 (630)
180 KOG1001|consensus 93.2 0.012 2.5E-07 52.3 -2.1 89 83-171 553-643 (674)
181 COG1110 Reverse gyrase [DNA re 93.1 0.17 3.6E-06 46.6 5.0 77 82-158 138-230 (1187)
182 PRK05580 primosome assembly pr 92.7 0.5 1.1E-05 42.5 7.5 63 82-145 203-266 (679)
183 TIGR00595 priA primosomal prot 92.0 0.56 1.2E-05 40.6 6.7 61 82-143 38-99 (505)
184 TIGR03117 cas_csf4 CRISPR-asso 92.0 0.26 5.6E-06 43.7 4.6 41 22-62 180-220 (636)
185 PF06733 DEAD_2: DEAD_2; Inte 91.8 0.15 3.4E-06 37.3 2.7 45 19-63 114-160 (174)
186 TIGR00596 rad1 DNA repair prot 91.7 0.71 1.5E-05 42.2 7.2 49 124-175 431-513 (814)
187 PF00176 SNF2_N: SNF2 family N 91.4 0.21 4.6E-06 39.5 3.3 59 3-61 86-147 (299)
188 PF04851 ResIII: Type III rest 91.1 0.28 6E-06 35.7 3.5 43 22-64 109-162 (184)
189 PRK14873 primosome assembly pr 90.5 1.5 3.2E-05 39.4 7.8 62 82-144 201-264 (665)
190 smart00489 DEXDc3 DEAD-like he 89.9 0.35 7.6E-06 38.7 3.3 44 18-62 205-250 (289)
191 smart00488 DEXDc2 DEAD-like he 89.9 0.35 7.6E-06 38.7 3.3 44 18-62 205-250 (289)
192 TIGR00580 mfd transcription-re 88.8 1.3 2.7E-05 41.4 6.4 62 82-143 513-579 (926)
193 TIGR01407 dinG_rel DnaQ family 88.6 0.71 1.5E-05 42.7 4.7 46 17-62 409-454 (850)
194 PF09848 DUF2075: Uncharacteri 87.8 1.3 2.9E-05 36.4 5.4 17 46-62 81-97 (352)
195 PF07652 Flavi_DEAD: Flaviviru 87.5 0.95 2.1E-05 32.2 3.7 33 27-60 75-107 (148)
196 KOG1133|consensus 87.3 4.3 9.3E-05 36.3 8.2 83 108-190 672-795 (821)
197 PF00271 Helicase_C: Helicase 86.6 1.3 2.9E-05 27.3 3.8 51 1-57 6-60 (78)
198 KOG0339|consensus 85.7 6.5 0.00014 34.0 8.3 58 82-143 312-376 (731)
199 COG1197 Mfd Transcription-repa 84.7 5.2 0.00011 37.9 7.9 62 82-143 656-722 (1139)
200 COG3587 Restriction endonuclea 84.5 2.1 4.4E-05 39.1 5.1 71 119-189 483-566 (985)
201 PRK10689 transcription-repair 83.7 3.3 7.2E-05 39.6 6.4 62 82-143 662-728 (1147)
202 PF13086 AAA_11: AAA domain; P 83.5 1.2 2.7E-05 33.6 3.1 39 20-62 166-206 (236)
203 COG1198 PriA Primosomal protei 82.8 1.9 4.2E-05 38.9 4.3 49 93-142 270-318 (730)
204 PF05872 DUF853: Bacterial pro 82.7 2.6 5.7E-05 35.8 4.8 46 46-101 252-298 (502)
205 PRK08074 bifunctional ATP-depe 82.6 2.1 4.5E-05 40.1 4.6 44 19-62 426-469 (928)
206 KOG0391|consensus 81.2 3.1 6.7E-05 39.6 5.0 60 2-63 690-752 (1958)
207 smart00490 HELICc helicase sup 80.5 6.9 0.00015 23.7 5.3 50 2-57 11-64 (82)
208 KOG0952|consensus 80.1 0.84 1.8E-05 42.4 1.1 59 2-63 1001-1061(1230)
209 PRK07246 bifunctional ATP-depe 79.7 3 6.5E-05 38.5 4.5 40 22-62 411-450 (820)
210 KOG0333|consensus 79.4 3.3 7.2E-05 35.8 4.3 47 1-53 540-590 (673)
211 PRK14701 reverse gyrase; Provi 79.1 5.2 0.00011 39.8 6.1 36 93-128 152-187 (1638)
212 TIGR01389 recQ ATP-dependent D 78.5 38 0.00083 30.0 11.0 42 86-127 70-111 (591)
213 PRK11747 dinG ATP-dependent DN 77.4 3.3 7.2E-05 37.5 4.1 43 20-62 215-260 (697)
214 PRK15483 type III restriction- 77.3 2.4 5.2E-05 39.5 3.2 73 119-191 501-583 (986)
215 KOG0298|consensus 76.9 1.7 3.6E-05 41.3 2.0 58 108-167 1257-1315(1394)
216 COG1205 Distinct helicase fami 76.9 66 0.0014 30.1 13.9 111 80-194 130-259 (851)
217 COG0514 RecQ Superfamily II DN 76.7 4.6 9.9E-05 35.6 4.5 41 87-127 75-115 (590)
218 PRK04914 ATP-dependent helicas 74.9 2.6 5.6E-05 39.5 2.7 38 24-61 247-285 (956)
219 TIGR00604 rad3 DNA repair heli 74.2 2.8 6.1E-05 38.0 2.8 43 20-63 191-235 (705)
220 COG1199 DinG Rad3-related DNA 73.0 4.1 8.9E-05 36.5 3.5 41 23-63 193-235 (654)
221 KOG0344|consensus 71.8 7.3 0.00016 34.0 4.5 51 2-58 412-466 (593)
222 COG0610 Type I site-specific r 69.7 26 0.00057 33.1 8.0 57 117-174 591-651 (962)
223 PF02142 MGS: MGS-like domain 69.2 4.2 9.1E-05 26.5 2.1 45 83-127 20-68 (95)
224 PF05621 TniB: Bacterial TniB 69.1 4.9 0.00011 32.3 2.8 19 47-65 144-162 (302)
225 KOG0331|consensus 68.9 8.1 0.00018 33.5 4.2 46 2-53 365-414 (519)
226 PRK12900 secA preprotein trans 68.3 5.7 0.00012 37.2 3.3 59 1-61 206-271 (1025)
227 COG1435 Tdk Thymidine kinase [ 67.1 19 0.0004 27.2 5.3 35 26-61 61-95 (201)
228 TIGR01054 rgy reverse gyrase. 65.8 16 0.00035 35.3 5.9 48 96-143 155-205 (1171)
229 PF13401 AAA_22: AAA domain; P 65.3 16 0.00034 24.7 4.5 12 50-61 89-100 (131)
230 COG0513 SrmB Superfamily II DN 65.1 18 0.0004 31.5 5.8 47 93-143 128-180 (513)
231 TIGR00614 recQ_fam ATP-depende 64.5 22 0.00048 30.5 6.1 42 86-127 68-109 (470)
232 smart00851 MGS MGS-like domain 63.5 13 0.00029 23.7 3.6 42 85-127 22-63 (90)
233 PRK04537 ATP-dependent RNA hel 62.5 17 0.00036 32.2 5.1 49 2-56 281-333 (572)
234 PRK04837 ATP-dependent RNA hel 61.9 14 0.00031 31.1 4.5 49 2-56 279-331 (423)
235 KOG1132|consensus 61.3 8.1 0.00018 35.5 2.9 43 19-62 217-261 (945)
236 COG1111 MPH1 ERCC4-like helica 60.4 74 0.0016 27.7 8.2 100 93-197 86-195 (542)
237 KOG1133|consensus 59.9 12 0.00027 33.6 3.7 40 24-63 323-363 (821)
238 PLN00206 DEAD-box ATP-dependen 59.6 21 0.00045 31.2 5.1 47 2-54 392-442 (518)
239 KOG0388|consensus 59.6 12 0.00027 33.9 3.6 70 3-75 643-721 (1185)
240 PRK06893 DNA replication initi 56.1 43 0.00094 25.6 5.9 16 46-61 89-104 (229)
241 PRK10590 ATP-dependent RNA hel 55.8 27 0.00059 29.8 5.2 47 2-54 269-319 (456)
242 cd01422 MGS Methylglyoxal synt 55.8 25 0.00055 23.8 4.1 45 82-127 33-78 (115)
243 COG2812 DnaX DNA polymerase II 55.4 16 0.00035 31.8 3.7 20 46-65 117-136 (515)
244 cd01423 MGS_CPS_I_III Methylgl 54.3 24 0.00051 23.8 3.8 46 83-128 33-80 (116)
245 PF15586 Imm47: Immunity prote 53.3 15 0.00032 25.1 2.6 51 24-78 44-94 (116)
246 PF00308 Bac_DnaA: Bacterial d 53.2 76 0.0016 24.1 6.8 59 4-62 35-111 (219)
247 PF13872 AAA_34: P-loop contai 52.8 50 0.0011 26.7 5.8 38 26-63 138-187 (303)
248 KOG4439|consensus 51.7 4.1 8.9E-05 36.5 -0.4 60 3-63 411-478 (901)
249 PRK04296 thymidine kinase; Pro 50.5 76 0.0016 23.5 6.3 36 47-99 77-112 (190)
250 PTZ00110 helicase; Provisional 50.5 32 0.0007 30.2 4.8 47 2-54 401-451 (545)
251 PRK11776 ATP-dependent RNA hel 49.8 1.2E+02 0.0025 26.0 8.1 48 93-144 101-154 (460)
252 KOG0347|consensus 49.4 28 0.00062 30.6 4.1 42 82-127 276-321 (731)
253 PRK12901 secA preprotein trans 48.9 16 0.00034 34.7 2.7 59 1-61 237-303 (1112)
254 PRK11634 ATP-dependent RNA hel 48.9 34 0.00074 30.7 4.8 47 2-54 269-319 (629)
255 PRK11057 ATP-dependent DNA hel 48.9 58 0.0012 29.1 6.2 42 86-127 82-123 (607)
256 COG0610 Type I site-specific r 48.1 23 0.0005 33.5 3.8 47 14-60 339-388 (962)
257 PTZ00424 helicase 45; Provisio 46.6 39 0.00085 28.0 4.6 48 2-55 291-342 (401)
258 COG0556 UvrB Helicase subunit 44.3 49 0.0011 29.2 4.7 66 1-75 469-538 (663)
259 PF08967 DUF1884: Domain of un 44.1 47 0.001 21.1 3.5 43 15-58 15-60 (85)
260 KOG0341|consensus 43.9 29 0.00062 29.2 3.2 46 2-53 445-494 (610)
261 PRK14087 dnaA chromosomal repl 43.9 2.1E+02 0.0045 24.6 9.6 58 5-62 143-220 (450)
262 PF10657 RC-P840_PscD: Photosy 43.0 35 0.00076 23.4 3.0 52 94-145 49-106 (144)
263 CHL00129 rpl1 ribosomal protei 42.9 36 0.00077 26.3 3.5 22 95-116 171-192 (229)
264 PLN03137 ATP-dependent DNA hel 42.7 82 0.0018 30.6 6.3 39 89-127 520-560 (1195)
265 COG0746 MobA Molybdopterin-gua 41.9 1.5E+02 0.0032 22.2 7.4 66 2-77 4-86 (192)
266 cd00532 MGS-like MGS-like doma 41.6 38 0.00082 22.7 3.2 45 83-128 32-77 (112)
267 KOG0335|consensus 41.5 49 0.0011 28.6 4.4 48 1-54 360-411 (482)
268 TIGR00963 secA preprotein tran 41.4 66 0.0014 29.6 5.4 41 82-128 114-154 (745)
269 PRK01297 ATP-dependent RNA hel 41.0 55 0.0012 28.1 4.8 48 2-55 359-410 (475)
270 PRK11664 ATP-dependent RNA hel 40.9 61 0.0013 30.2 5.2 46 2-53 239-288 (812)
271 TIGR01970 DEAH_box_HrpB ATP-de 40.8 51 0.0011 30.7 4.7 46 2-53 236-285 (819)
272 KOG1001|consensus 40.7 21 0.00047 32.2 2.3 39 22-64 232-270 (674)
273 cd06353 PBP1_BmpA_Med_like Per 40.2 73 0.0016 24.8 5.0 55 2-56 31-89 (258)
274 KOG0989|consensus 39.8 26 0.00056 28.5 2.4 19 46-64 127-145 (346)
275 PRK05234 mgsA methylglyoxal sy 39.8 58 0.0013 23.1 4.0 45 82-127 38-83 (142)
276 PRK08084 DNA replication initi 39.5 95 0.0021 23.8 5.5 15 47-61 96-110 (235)
277 TIGR01169 rplA_bact ribosomal 38.7 35 0.00075 26.3 2.9 21 95-115 170-190 (227)
278 KOG0991|consensus 38.2 64 0.0014 25.4 4.2 16 47-62 112-127 (333)
279 PRK11192 ATP-dependent RNA hel 37.4 2.5E+02 0.0055 23.6 10.8 93 90-188 98-200 (434)
280 PF12340 DUF3638: Protein of u 36.0 34 0.00074 26.5 2.4 40 23-62 129-186 (229)
281 PRK12898 secA preprotein trans 35.6 1.8E+02 0.0038 26.5 7.1 51 82-139 161-211 (656)
282 PRK10222 PTS system L-ascorbat 35.5 70 0.0015 20.4 3.5 43 84-133 6-48 (85)
283 KOG0336|consensus 34.7 35 0.00077 28.9 2.5 46 2-53 489-538 (629)
284 KOG0327|consensus 34.6 50 0.0011 27.6 3.3 90 113-203 116-205 (397)
285 PRK12422 chromosomal replicati 33.9 1.7E+02 0.0038 25.1 6.6 59 4-62 142-216 (445)
286 PRK05642 DNA replication initi 33.8 57 0.0012 25.1 3.5 69 5-73 47-123 (234)
287 KOG0701|consensus 33.7 13 0.00028 36.7 -0.1 57 105-161 707-763 (1606)
288 PRK13103 secA preprotein trans 33.2 91 0.002 29.4 5.0 42 82-129 140-181 (913)
289 PF13167 GTP-bdg_N: GTP-bindin 33.0 1.4E+02 0.0031 19.5 4.7 35 82-116 46-80 (95)
290 KOG0442|consensus 32.9 87 0.0019 29.1 4.7 81 26-106 101-217 (892)
291 KOG0330|consensus 32.9 61 0.0013 27.4 3.5 47 1-53 323-373 (476)
292 PRK12904 preprotein translocas 32.9 90 0.0019 29.1 4.9 40 82-127 139-178 (830)
293 KOG1803|consensus 32.4 64 0.0014 28.7 3.7 39 20-62 334-372 (649)
294 PHA03371 circ protein; Provisi 32.2 51 0.0011 25.3 2.8 46 129-174 30-89 (240)
295 PRK10310 PTS system galactitol 31.8 1.5E+02 0.0032 19.2 4.8 49 82-137 20-69 (94)
296 PRK14086 dnaA chromosomal repl 31.7 1.2E+02 0.0026 27.3 5.4 70 4-73 315-403 (617)
297 PRK12723 flagellar biosynthesi 31.6 3.2E+02 0.0069 23.1 10.0 106 2-126 206-320 (388)
298 COG1794 RacX Aspartate racemas 31.5 68 0.0015 24.8 3.4 96 97-193 4-102 (230)
299 KOG0351|consensus 31.3 94 0.002 29.5 4.8 110 83-195 318-449 (941)
300 KOG0338|consensus 31.2 43 0.00092 29.3 2.4 47 1-53 449-499 (691)
301 TIGR00631 uvrb excinuclease AB 31.1 72 0.0016 28.9 4.0 53 2-60 466-522 (655)
302 PRK13104 secA preprotein trans 30.5 1.1E+02 0.0025 28.7 5.2 41 82-128 140-180 (896)
303 cd01424 MGS_CPS_II Methylglyox 30.4 1.1E+02 0.0023 20.2 4.0 44 82-127 32-75 (110)
304 PRK07003 DNA polymerase III su 28.9 38 0.00083 31.2 1.9 18 47-64 118-135 (830)
305 COG2255 RuvB Holliday junction 28.8 54 0.0012 26.5 2.5 17 45-61 100-116 (332)
306 cd01011 nicotinamidase Nicotin 28.6 1.5E+02 0.0032 22.0 4.9 48 83-130 127-174 (196)
307 cd01542 PBP1_TreR_like Ligand- 28.6 2.6E+02 0.0056 21.1 6.5 45 82-126 18-62 (259)
308 PF13173 AAA_14: AAA domain 28.5 30 0.00065 23.6 1.0 14 48-61 61-74 (128)
309 PHA02653 RNA helicase NPH-II; 28.0 97 0.0021 28.2 4.3 46 2-53 421-469 (675)
310 PRK01221 putative deoxyhypusin 27.9 1.5E+02 0.0033 24.1 5.0 47 82-128 44-91 (312)
311 PF05707 Zot: Zonular occluden 27.9 31 0.00066 25.6 1.0 16 48-63 79-94 (193)
312 PRK08727 hypothetical protein; 27.4 48 0.001 25.5 2.1 40 23-62 68-107 (233)
313 PRK10628 LigB family dioxygena 27.0 2.7E+02 0.0058 21.9 6.0 38 135-172 106-145 (246)
314 KOG0389|consensus 26.8 1.6E+02 0.0034 27.5 5.2 49 82-132 457-512 (941)
315 PRK07952 DNA replication prote 26.7 1.5E+02 0.0033 23.1 4.7 39 23-61 126-175 (244)
316 PRK12323 DNA polymerase III su 26.4 43 0.00094 30.3 1.8 18 47-64 123-140 (700)
317 PRK09548 PTS system ascorbate- 25.9 2.3E+02 0.0049 25.5 6.0 23 82-104 524-546 (602)
318 PF13242 Hydrolase_like: HAD-h 25.9 61 0.0013 19.7 2.0 30 2-31 42-71 (75)
319 PRK14956 DNA polymerase III su 25.8 50 0.0011 28.7 2.0 17 47-63 120-136 (484)
320 PF01276 OKR_DC_1: Orn/Lys/Arg 25.7 93 0.002 26.5 3.5 13 48-60 196-208 (417)
321 COG1335 PncA Amidases related 25.5 1.8E+02 0.0039 21.5 4.9 49 83-131 122-170 (205)
322 TIGR01198 pgl 6-phosphoglucono 25.4 62 0.0013 24.9 2.3 34 25-58 30-66 (233)
323 cd00268 DEADc DEAD-box helicas 25.4 2.7E+02 0.0059 20.3 10.0 48 92-143 96-149 (203)
324 TIGR00376 DNA helicase, putati 25.3 65 0.0014 29.0 2.7 36 20-62 340-375 (637)
325 PRK07764 DNA polymerase III su 25.1 51 0.0011 30.7 2.1 18 47-64 119-136 (824)
326 PF03846 SulA: Cell division i 24.8 2.1E+02 0.0045 19.7 4.5 41 85-125 73-116 (119)
327 PHA02544 44 clamp loader, smal 24.8 2.6E+02 0.0055 22.3 5.9 29 47-75 99-127 (316)
328 TIGR03817 DECH_helic helicase/ 24.8 97 0.0021 28.5 3.8 49 2-56 303-355 (742)
329 PRK06827 phosphoribosylpyropho 24.6 2.2E+02 0.0048 24.0 5.5 47 82-129 280-329 (382)
330 PHA02558 uvsW UvsW helicase; P 24.6 1.3E+02 0.0027 26.2 4.3 49 2-55 368-420 (501)
331 PRK14958 DNA polymerase III su 24.5 52 0.0011 28.8 1.9 18 47-64 118-135 (509)
332 KOG0953|consensus 24.3 78 0.0017 28.1 2.9 29 4-32 383-417 (700)
333 cd01012 YcaC_related YcaC rela 24.2 2.1E+02 0.0044 20.3 4.8 48 83-130 77-124 (157)
334 PHA00350 putative assembly pro 24.1 76 0.0017 26.8 2.8 14 50-63 83-96 (399)
335 cd00032 CASc Caspase, interleu 23.9 3.4E+02 0.0074 20.9 9.3 73 80-158 32-108 (243)
336 cd01015 CSHase N-carbamoylsarc 23.9 2.3E+02 0.0049 20.5 5.1 48 83-130 103-150 (179)
337 KOG1615|consensus 23.8 2.6E+02 0.0057 21.3 5.1 22 82-103 93-114 (227)
338 PF00857 Isochorismatase: Isoc 23.6 1.3E+02 0.0028 21.5 3.7 48 82-129 100-147 (174)
339 PF12846 AAA_10: AAA-like doma 23.4 49 0.0011 25.8 1.5 16 48-63 220-235 (304)
340 KOG0340|consensus 23.3 1.4E+02 0.0029 25.1 3.9 47 1-53 277-327 (442)
341 TIGR03614 RutB pyrimidine util 22.4 2.3E+02 0.0051 21.5 5.0 48 83-130 140-187 (226)
342 PRK07994 DNA polymerase III su 22.4 62 0.0013 29.3 2.0 18 47-64 118-135 (647)
343 cd01013 isochorismatase Isocho 22.2 2.2E+02 0.0047 21.3 4.7 48 83-130 131-178 (203)
344 cd01294 DHOase Dihydroorotase 22.1 1.1E+02 0.0023 24.9 3.3 27 104-130 219-245 (335)
345 PLN02621 nicotinamidase 22.0 2.4E+02 0.0053 20.9 5.0 47 84-130 117-163 (197)
346 PRK00411 cdc6 cell division co 21.7 1.1E+02 0.0023 25.4 3.3 13 49-61 139-151 (394)
347 PRK09200 preprotein translocas 21.6 1.8E+02 0.0039 27.1 4.7 40 82-127 136-176 (790)
348 TIGR00678 holB DNA polymerase 21.3 73 0.0016 23.3 2.0 17 46-62 94-110 (188)
349 cd01120 RecA-like_NTPases RecA 21.2 2.8E+02 0.0061 18.9 5.1 18 46-63 83-100 (165)
350 PRK11609 nicotinamidase/pyrazi 21.1 2.5E+02 0.0055 21.0 4.9 48 83-130 131-178 (212)
351 PF01591 6PF2K: 6-phosphofruct 21.0 2.9E+02 0.0063 21.2 5.2 43 82-124 84-127 (222)
352 PF01751 Toprim: Toprim domain 21.0 1.2E+02 0.0027 19.6 2.8 51 82-132 11-73 (100)
353 COG1058 CinA Predicted nucleot 21.0 4.2E+02 0.0092 20.9 6.2 49 80-129 21-70 (255)
354 KOG0334|consensus 20.8 1.2E+02 0.0025 28.9 3.4 50 2-57 637-690 (997)
355 PRK11440 putative hydrolase; P 20.8 2.5E+02 0.0054 20.5 4.8 49 83-131 110-158 (188)
356 PF14824 Sirohm_synth_M: Siroh 20.7 74 0.0016 16.0 1.3 11 117-127 2-12 (30)
357 PF00265 TK: Thymidine kinase; 20.6 1.9E+02 0.0042 21.2 4.1 33 48-98 76-108 (176)
358 TIGR03687 pupylate_cterm ubiqu 20.6 67 0.0015 16.4 1.1 17 53-69 8-24 (33)
359 PF13177 DNA_pol3_delta2: DNA 20.5 79 0.0017 22.7 1.9 16 47-62 101-116 (162)
360 TIGR00708 cobA cob(I)alamin ad 20.4 1.4E+02 0.0031 22.0 3.3 21 46-66 95-115 (173)
361 PRK06526 transposase; Provisio 20.3 71 0.0015 25.0 1.8 39 23-61 125-172 (254)
362 PRK14951 DNA polymerase III su 20.3 57 0.0012 29.3 1.4 19 47-65 123-141 (618)
363 PF02608 Bmp: Basic membrane p 20.3 2.6E+02 0.0057 22.4 5.1 56 2-57 34-94 (306)
364 TIGR03249 KdgD 5-dehydro-4-deo 20.2 4.2E+02 0.0091 21.1 6.2 46 82-127 28-82 (296)
365 COG4822 CbiK Cobalamin biosynt 20.2 4.2E+02 0.0091 20.5 7.1 26 17-42 47-72 (265)
No 1
>KOG0328|consensus
Probab=100.00 E-value=9.2e-45 Score=274.50 Aligned_cols=201 Identities=89% Similarity=1.383 Sum_probs=196.1
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
|||+|+.++||.+..+.++.+.-|.+++.||||++.+++.++.+..+.++++|+||||.|++.+|.+++..++.++|+..
T Consensus 122 mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~ 201 (400)
T KOG0328|consen 122 MNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGA 201 (400)
T ss_pred ccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred h----------------------------------------------------------------------------HHH
Q psy6712 81 Q----------------------------------------------------------------------------VDW 84 (210)
Q Consensus 81 ~----------------------------------------------------------------------------~~~ 84 (210)
| ++|
T Consensus 202 Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdw 281 (400)
T KOG0328|consen 202 QVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 281 (400)
T ss_pred eEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhH
Confidence 8 899
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
|.+.+++.++.+..+||+|++++|.+++..|+.|+.++|++|+..++|+|+|.+++|||||+|.+...|+||+||.||.|
T Consensus 282 Ltekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 282 LTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred HHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 165 RKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
+.|.++-|+..++...++.++++++..+.++|++.-.
T Consensus 362 RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999999999999999999999999998654
No 2
>KOG0330|consensus
Probab=100.00 E-value=2.7e-44 Score=281.89 Aligned_cols=199 Identities=32% Similarity=0.646 Sum_probs=190.6
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCc
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~ 79 (210)
+|++|+++.||.++..|...+.+.|||||+|||+|++++.+ +.+++.+++++|+||||++++..|.+.+++|+..+|..
T Consensus 156 iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 156 IGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred cCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999999999999995 78999999999999999999999999999999999987
Q ss_pred hh---------------------------------------------------------------------------HHH
Q psy6712 80 TQ---------------------------------------------------------------------------VDW 84 (210)
Q Consensus 80 ~~---------------------------------------------------------------------------~~~ 84 (210)
++ +.+
T Consensus 236 rqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~ 315 (476)
T KOG0330|consen 236 RQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRF 315 (476)
T ss_pred ceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHH
Confidence 77 788
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
++-.|+..|+.+..+||.|++..|...++.|++|..+|||||+++++|+|+|.+++|||||+|.+..+|+||+||++|.|
T Consensus 316 la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 316 LALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred HHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeccCcHHHHHHHHHHhcCccccccCCc
Q psy6712 165 RKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
++|.++.+++.-|.+.++++|..++..+++.+.+-
T Consensus 396 rsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999998865554
No 3
>KOG0331|consensus
Probab=100.00 E-value=9.9e-44 Score=292.85 Aligned_cols=201 Identities=41% Similarity=0.686 Sum_probs=190.8
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC-CCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL-PPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~-~~~~ 80 (210)
++++.+++||.+...|...+.++++|+||||||+.+++..+.++++++.++|+||||+|++.+|.+++..|+..+ ++.+
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 4444
Q ss_pred h-------------------------------------------------------------------------------
Q psy6712 81 Q------------------------------------------------------------------------------- 81 (210)
Q Consensus 81 ~------------------------------------------------------------------------------- 81 (210)
|
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 5
Q ss_pred -HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 82 -VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 82 -~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
++.|+..|+..++++..+||+.++.+|..+++.|++|++.|||||+.+++|+|+|+|++|||||+|.+.++|+||+||+
T Consensus 353 ~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 353 TCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRT 432 (519)
T ss_pred hHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcc
Confidence 8889999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 161 GRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 161 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
||.|+.|.++.|+...+......+.+.+....+.+|..+...
T Consensus 433 GRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 433 GRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred ccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 999999999999999999999999999988888887766544
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-41 Score=286.19 Aligned_cols=192 Identities=45% Similarity=0.804 Sum_probs=183.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
+++++.++||.+...|...+..++|||||||||+++++.++.++++.++++|+||||+|++.||.+++..|+..++...|
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~q 207 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQ 207 (513)
T ss_pred CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccE
Confidence 57899999999999999999989999999999999999999999999999999999999999999999999999998666
Q ss_pred ------------------------------------------------------------------------------HH
Q psy6712 82 ------------------------------------------------------------------------------VD 83 (210)
Q Consensus 82 ------------------------------------------------------------------------------~~ 83 (210)
++
T Consensus 208 tllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~ 287 (513)
T COG0513 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVE 287 (513)
T ss_pred EEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 78
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.+++.|...|+++..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++|||||+|.+...|+||+||+||.
T Consensus 288 ~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 288 ELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRA 367 (513)
T ss_pred HHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccC-cHHHHHHHHHHhcCccc
Q psy6712 164 GRKGVAISFVKSD-DIRILRDIEQYYSTQID 193 (210)
Q Consensus 164 g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (210)
|..|.++.|+.+. |...+..+++.+...++
T Consensus 368 G~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 368 GRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999986 88999999999877644
No 5
>KOG0326|consensus
Probab=100.00 E-value=1.9e-41 Score=260.45 Aligned_cols=203 Identities=39% Similarity=0.716 Sum_probs=197.2
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+|++|...+||++.+..+-++.+.+|++|+||||++++...+...++++..+|+||||.|++..|.+.+..++.++|+.+
T Consensus 180 ~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 180 LGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred cCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h--------------------------------------------------------------------------HHHHH
Q psy6712 81 Q--------------------------------------------------------------------------VDWLT 86 (210)
Q Consensus 81 ~--------------------------------------------------------------------------~~~l~ 86 (210)
| ++.++
T Consensus 260 QillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLA 339 (459)
T KOG0326|consen 260 QILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLA 339 (459)
T ss_pred eeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHH
Confidence 8 89999
Q ss_pred HHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc
Q psy6712 87 EKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 166 (210)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~ 166 (210)
+.+.+.|+.+.++|+.|-++.|..++-.|++|.++.||||+.+.+|+|++++++|||||+|.+.++|+||+||+||.|.-
T Consensus 340 kKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 340 KKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred HHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCcHHHHHHHHHHhcCccccccCCccccC
Q psy6712 167 GVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
|.++.+++-+|...+..+|+.++.++..+|....+.+
T Consensus 420 GlAInLityedrf~L~~IE~eLGtEI~pip~~iDk~l 456 (459)
T KOG0326|consen 420 GLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDKSL 456 (459)
T ss_pred ceEEEEEehhhhhhHHHHHHHhccccccCCCcCCccc
Confidence 9999999999999999999999999999998877655
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-40 Score=275.92 Aligned_cols=204 Identities=34% Similarity=0.567 Sum_probs=188.9
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+|+++..++||.+...+...+.+++||+|+||+++.+++.++.+++++++++|+||||++++.++...+..++..++...
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~ 189 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN 189 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc
Confidence 37889999999999999999988999999999999999999999999999999999999999999988888887766422
Q ss_pred h-----------------------------------------------------------------------------HH
Q psy6712 81 Q-----------------------------------------------------------------------------VD 83 (210)
Q Consensus 81 ~-----------------------------------------------------------------------------~~ 83 (210)
+ ++
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE 269 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 1 77
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.+.+.|.+.++++..+||+|++++|..++++|++|++++||||+++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 270 ~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 270 EIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred HHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCC
Confidence 88889988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccCC
Q psy6712 164 GRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSLH 204 (210)
Q Consensus 164 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (210)
|+.|.+++|+.+.+...+..+++++...++..+.+...++.
T Consensus 350 G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 390 (423)
T PRK04837 350 GASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALLT 390 (423)
T ss_pred CCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhh
Confidence 99999999999999999999999999998888777776663
No 7
>KOG0333|consensus
Probab=100.00 E-value=6.3e-40 Score=265.63 Aligned_cols=189 Identities=37% Similarity=0.678 Sum_probs=179.7
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+|++++.++||.+.++|--.+..+|+|+|+||++|.+.|.+..+-++++.++|+||||+|+|.+|.+++..++...|...
T Consensus 349 lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn 428 (673)
T KOG0333|consen 349 LGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSN 428 (673)
T ss_pred ccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred h-------------------------------------------------------------------------------
Q psy6712 81 Q------------------------------------------------------------------------------- 81 (210)
Q Consensus 81 ~------------------------------------------------------------------------------- 81 (210)
.
T Consensus 429 ~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL 508 (673)
T KOG0333|consen 429 AKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKL 508 (673)
T ss_pred cCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHH
Confidence 3
Q ss_pred ---------------------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcE
Q psy6712 82 ---------------------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140 (210)
Q Consensus 82 ---------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~ 140 (210)
++++++.|.+.++++..+||+-++++|..+++.|++|..+|||||+++++|+|+|+|.+
T Consensus 509 ~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 509 IEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred HHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhc
Q psy6712 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYS 189 (210)
Q Consensus 141 vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 189 (210)
|||||++.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 589 VinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 589 VINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred eeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887777776654
No 8
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.7e-39 Score=274.66 Aligned_cols=201 Identities=36% Similarity=0.647 Sum_probs=186.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...|...+.++++|+|+||++|.+++.++..++++++++|+||||+|++++|...+..++..++...|
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 57889999999999999999999999999999999999999899999999999999999999998888888765544333
Q ss_pred -------------------------------------------------------------------------------H
Q psy6712 82 -------------------------------------------------------------------------------V 82 (210)
Q Consensus 82 -------------------------------------------------------------------------------~ 82 (210)
+
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 7
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcC
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 162 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR 162 (210)
+.+++.|+..++.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 163 FGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 163 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
.|+.|.+++|+++.+...++.+.+.+....+++|..+.++
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 9999999999999999999999999999999888666544
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.8e-38 Score=267.45 Aligned_cols=197 Identities=35% Similarity=0.686 Sum_probs=184.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+.+.|...+..+++|+|+||+++.+++.++.+.+++++++|+||||+|++.++...+..++..++...|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q 180 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQ 180 (460)
T ss_pred CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccE
Confidence 57899999999999999999999999999999999999999999999999999999999999999998888887765544
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy6712 82 --------------------------------------------------------------------------VDWLTE 87 (210)
Q Consensus 82 --------------------------------------------------------------------------~~~l~~ 87 (210)
++.+++
T Consensus 181 ~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHH
Confidence 788899
Q ss_pred HHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCce
Q psy6712 88 KMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g 167 (210)
.|.+.++.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|
T Consensus 261 ~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 261 ALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCcHHHHHHHHHHhcCccccccCC
Q psy6712 168 VAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (210)
.+++|+.+.+...++.+++.++..+...+++
T Consensus 341 ~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 341 LALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred eEEEEEchhHHHHHHHHHHHhCCCCceecCC
Confidence 9999999999999999999998877765543
No 10
>KOG0342|consensus
Probab=100.00 E-value=3.6e-39 Score=259.45 Aligned_cols=195 Identities=34% Similarity=0.599 Sum_probs=180.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++.|..++||.+.......+..+++|+|+|||||.+++++ +.+-.++++++|+||||++++.+|.+++..|+..+|..+
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc
Confidence 5779999999999999999988999999999999999999 345567889999999999999999999999999999887
Q ss_pred h-------------------------------------------------------------------------------
Q psy6712 81 Q------------------------------------------------------------------------------- 81 (210)
Q Consensus 81 ~------------------------------------------------------------------------------- 81 (210)
|
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~ 342 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMS 342 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhH
Confidence 7
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
+.++++.|....++|.-+||++++..|..+...|++.+..|||||+.++||+|+|+|++||+||+|.++.+|+||+||+|
T Consensus 343 vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 343 VKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTA 422 (543)
T ss_pred HHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccc
Confidence 78888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCc
Q psy6712 162 RFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 162 R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
|.|..|.+++++.+.|..+++.++ ..++.+.+.+.
T Consensus 423 R~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~ 457 (543)
T KOG0342|consen 423 REGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPP 457 (543)
T ss_pred ccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCC
Confidence 999999999999999999999998 44555544443
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-38 Score=265.68 Aligned_cols=196 Identities=37% Similarity=0.676 Sum_probs=181.3
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+++++..++||.+.+.++..+..+++|+|+||++|.+++..+.+++++++++|+||||+++++++...+..++..++...
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~ 181 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccC
Confidence 36788999999999999999999999999999999999998888999999999999999999998877777777665544
Q ss_pred h---------------------------------------------------------------------------HHHH
Q psy6712 81 Q---------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 81 ~---------------------------------------------------------------------------~~~l 85 (210)
| ++.+
T Consensus 182 q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred eEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 4 7888
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
++.|...++.+..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|.
T Consensus 262 ~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 262 AEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAA 341 (456)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCC
Confidence 89999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCcccccc
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (210)
.|.+++|+...+...++.+++.+..+++...
T Consensus 342 ~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~ 372 (456)
T PRK10590 342 TGEALSLVCVDEHKLLRDIEKLLKKEIPRIA 372 (456)
T ss_pred CeeEEEEecHHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999999999999999988875543
No 12
>KOG0336|consensus
Probab=100.00 E-value=1.5e-39 Score=257.11 Aligned_cols=203 Identities=35% Similarity=0.610 Sum_probs=189.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
|.+..+++||.+..+|+..++.+.+|+++||++|.++.-.+.++++.+-++|+||||+|++.+|.+++.+|+--+.+.+|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999987777766
Q ss_pred -----------------------------------------------------------------------------HHH
Q psy6712 82 -----------------------------------------------------------------------------VDW 84 (210)
Q Consensus 82 -----------------------------------------------------------------------------~~~ 84 (210)
++.
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 555
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
|+..|--.|+.+-.+||+-++.+|+..++.|+.|+.+|||+|+.+++|+|+|+++||+|||+|.++..|.||+||+||.|
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 66666667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccCC
Q psy6712 165 RKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSLH 204 (210)
Q Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (210)
+.|..+.|+.-.+..++.++-+.+...-+++|.++.+...
T Consensus 561 r~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAe 600 (629)
T KOG0336|consen 561 RTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAE 600 (629)
T ss_pred CCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 9999999999999999999999999999999887765443
No 13
>KOG0341|consensus
Probab=100.00 E-value=1.8e-39 Score=255.26 Aligned_cols=202 Identities=33% Similarity=0.629 Sum_probs=189.9
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh-
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ- 81 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~- 81 (210)
+++.+++||.+..+|....+.|+||+|+|||||.++|..+.+++.-++++.+||||+|++.||.+++..++.++...+|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQT 360 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQT 360 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhe
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q psy6712 82 -------------------------------------------------------------------------VDWLTEK 88 (210)
Q Consensus 82 -------------------------------------------------------------------------~~~l~~~ 88 (210)
++.+.++
T Consensus 361 LLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHH
Confidence 7788899
Q ss_pred HHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCcee
Q psy6712 89 MREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 168 (210)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~ 168 (210)
|--+|..+..+||+-.+++|...+++|+.|+-++||+|+.++.|+|+|++.+|||||+|..+.+|.||+||+||.|+.|.
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi 520 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI 520 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecc-CcHHHHHHHHHHhcCccccccCCccccCC
Q psy6712 169 AISFVKS-DDIRILRDIEQYYSTQIDEMPMNGKRSLH 204 (210)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (210)
+..|++. .+...+-.++..+....+++|..+..+..
T Consensus 521 ATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 521 ATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred eeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 9999987 46677888888888888888877665543
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-38 Score=266.96 Aligned_cols=200 Identities=32% Similarity=0.616 Sum_probs=180.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
+++++.++||.....|...+..+++|+|+||++|.+++.++.+.+++++++|+||||+|++++|.+.+..++..++....
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~ 303 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQV 303 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcE
Confidence 57889999999999999999999999999999999999999999999999999999999999998888777665432111
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 304 l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 304 LLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 5667
Q ss_pred HHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 86 TEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 86 ~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
++.|.. .++.+..+||+|+..+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC
Confidence 777754 5889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 165 RKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
..|.+++|+.+.+...+..+.+.+....+.+|.++.+
T Consensus 464 ~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 464 EKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred CCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999888887776544
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.9e-38 Score=269.24 Aligned_cols=199 Identities=39% Similarity=0.673 Sum_probs=186.1
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+.+.+...+..+++|+|+||+++.+++.++.+++++++++|+||||+|++.++.+.+..++..++...|
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q 182 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 (629)
T ss_pred CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCe
Confidence 67899999999999999999999999999999999999999999999999999999999999999999888877765544
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q psy6712 82 ---------------------------------------------------------------------------VDWLT 86 (210)
Q Consensus 82 ---------------------------------------------------------------------------~~~l~ 86 (210)
++.++
T Consensus 183 ~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHH
Confidence 77888
Q ss_pred HHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc
Q psy6712 87 EKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 166 (210)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~ 166 (210)
+.|...++.+..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.
T Consensus 263 ~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 263 EALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCcHHHHHHHHHHhcCccccccCCcc
Q psy6712 167 GVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGK 200 (210)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (210)
|.+++|+.+.+...++.+++.++..+++++.+..
T Consensus 343 G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 343 GRALLFVENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred ceEEEEechHHHHHHHHHHHHhCCCcceecCCcH
Confidence 9999999999999999999999999888765543
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.8e-37 Score=259.75 Aligned_cols=194 Identities=36% Similarity=0.599 Sum_probs=177.8
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+++++..++||.....+...+.++++|||+||++|.+++..+.+++++++++|+||||+|+++++...+..+...++...
T Consensus 100 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~ 179 (434)
T PRK11192 100 THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRK 179 (434)
T ss_pred CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcccc
Confidence 36889999999999999888888999999999999999999999999999999999999999888877766655443322
Q ss_pred h-----------------------------------------------------------------------------HH
Q psy6712 81 Q-----------------------------------------------------------------------------VD 83 (210)
Q Consensus 81 ~-----------------------------------------------------------------------------~~ 83 (210)
| ++
T Consensus 180 q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~ 259 (434)
T PRK11192 180 QTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVH 259 (434)
T ss_pred EEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHH
Confidence 2 78
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 260 ~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 260 ELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccCcHHHHHHHHHHhcCcccc
Q psy6712 164 GRKGVAISFVKSDDIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 164 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
|..|.+++++...|...+.++++++...+..
T Consensus 340 g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 340 GRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988877654
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-37 Score=266.84 Aligned_cols=199 Identities=35% Similarity=0.628 Sum_probs=181.9
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCC-
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP- 78 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~- 78 (210)
+++++..++||.+.+.+...+.+++||||+||++|++++.+. .+.++.++++||||||.|++.++...+..++..++.
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~ 190 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc
Confidence 368899999999999999989889999999999999988775 578899999999999999999999888888877664
Q ss_pred -chh---------------------------------------------------------------------------H
Q psy6712 79 -ATQ---------------------------------------------------------------------------V 82 (210)
Q Consensus 79 -~~~---------------------------------------------------------------------------~ 82 (210)
..| +
T Consensus 191 ~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFV 270 (572)
T ss_pred cCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHH
Confidence 222 7
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcC
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 162 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR 162 (210)
+.+++.|...++.+..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||
T Consensus 271 e~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR 350 (572)
T PRK04537 271 ERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350 (572)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCc
Q psy6712 163 FGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 163 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
.|..|.+++|+.+.+...+..+++.+..+++..+...
T Consensus 351 ~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 387 (572)
T PRK04537 351 LGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTA 387 (572)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccCh
Confidence 9999999999999999999999999988876655544
No 18
>KOG0338|consensus
Probab=100.00 E-value=2.7e-38 Score=255.58 Aligned_cols=186 Identities=33% Similarity=0.602 Sum_probs=171.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+|.|.+++||.+.+.|...|+..|||+|+||||+.+++.+. .++++++-.+|+||||+|++.+|.++++.|+..|++.+
T Consensus 280 ~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R 359 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR 359 (691)
T ss_pred cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc
Confidence 58899999999999999999999999999999999999984 68999999999999999999999999999999999999
Q ss_pred h------------------------------------------------------------------------------H
Q psy6712 81 Q------------------------------------------------------------------------------V 82 (210)
Q Consensus 81 ~------------------------------------------------------------------------------~ 82 (210)
| +
T Consensus 360 QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~A 439 (691)
T KOG0338|consen 360 QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQA 439 (691)
T ss_pred cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHH
Confidence 9 1
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcC
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 162 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR 162 (210)
..+.=.|--.|+++.-+||.+++.+|.+.++.|+.+++++||||+.+++|+|++.+..||||++|.+...|+||+||++|
T Consensus 440 HRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 440 HRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred HHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 11111111137899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccCcHHHHHHHHHH
Q psy6712 163 FGRKGVAISFVKSDDIRILRDIEQY 187 (210)
Q Consensus 163 ~g~~g~~~~~~~~~~~~~~~~~~~~ 187 (210)
.|+.|.++.|+...+.+.++.+-+.
T Consensus 520 AGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 520 AGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred cccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999998887765
No 19
>KOG0335|consensus
Probab=100.00 E-value=2.1e-38 Score=257.75 Aligned_cols=200 Identities=37% Similarity=0.611 Sum_probs=187.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCc-
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPA- 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~- 79 (210)
++++..+|||.+...|...+..+|||+|+|||+|.+++..+++.+++++++|+||||+|+| .+|.+++.+|+......
T Consensus 180 ~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~ 259 (482)
T KOG0335|consen 180 GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP 259 (482)
T ss_pred cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC
Confidence 5788999999999999999999999999999999999999999999999999999999999 89999999998766432
Q ss_pred ---hh---------------------------------------------------------------------------
Q psy6712 80 ---TQ--------------------------------------------------------------------------- 81 (210)
Q Consensus 80 ---~~--------------------------------------------------------------------------- 81 (210)
+|
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccce
Confidence 22
Q ss_pred ----------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 82 ----------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 82 ----------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
+..+...|...++++..+||.-++.+|.+.++.|+.|++++||||+++++|+|+|+|++||+||+|.+..
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d 419 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID 419 (482)
T ss_pred EEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
+|+||+||+||.|..|.+..|++..+....+.+.+.+...-+++|.=+..
T Consensus 420 ~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred hHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 99999999999999999999999999999999999999998888866554
No 20
>KOG0340|consensus
Probab=100.00 E-value=4.2e-38 Score=244.67 Aligned_cols=201 Identities=37% Similarity=0.606 Sum_probs=189.5
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc----CccCCCccEEEechhhHHhccchHHHHHHHHhhC
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR----VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL 76 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~ 76 (210)
++++|.+++||.++-.|...|...+|++|+|||++.+++.++ ...+++++++|+||||.+++..|.+.+..+..-+
T Consensus 102 l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 588999999999999999999999999999999999998875 3457899999999999999999999999999988
Q ss_pred CCchh---------------------------------------------------------------------------
Q psy6712 77 PPATQ--------------------------------------------------------------------------- 81 (210)
Q Consensus 77 ~~~~~--------------------------------------------------------------------------- 81 (210)
|..+|
T Consensus 182 P~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFv 261 (442)
T KOG0340|consen 182 PKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFV 261 (442)
T ss_pred CCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEe
Confidence 88777
Q ss_pred -----HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHh
Q psy6712 82 -----VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 156 (210)
Q Consensus 82 -----~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~ 156 (210)
++.++..|+..++.+..+|+.|++.+|...+.+|+.+..+|||||+.+++|+|+|.|++|||||.|.++.+|+||
T Consensus 262 nttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 262 NTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred ehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHh
Confidence 788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 157 IGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 157 ~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
+||++|.|+.|.+++++...|.+.+..+|+-.+..+.+.+.....
T Consensus 342 vGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~ 386 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRT 386 (442)
T ss_pred hcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchh
Confidence 999999999999999999999999999999999999988766543
No 21
>KOG0345|consensus
Probab=100.00 E-value=1.4e-37 Score=249.16 Aligned_cols=183 Identities=34% Similarity=0.698 Sum_probs=163.1
Q ss_pred CceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhccchHHHHHHHHhhCCC
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 78 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~ 78 (210)
+++|.+++||.+.++..+.+.+ +++|+|||||||.+++++.. ++++++.++|+||||++++.||...++.|+.++|+
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccc
Confidence 5789999999999999999975 79999999999999999954 45569999999999999999999999999999998
Q ss_pred chh-----------------------------------------------------------------------------
Q psy6712 79 ATQ----------------------------------------------------------------------------- 81 (210)
Q Consensus 79 ~~~----------------------------------------------------------------------------- 81 (210)
.+.
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCas 267 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCAS 267 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcch
Confidence 766
Q ss_pred HHHHHHHHHh--cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMRE--ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
++.....|.. ...++..+||.|++..|..++++|+.....+|+||+++++|+|+|++++||+||+|.+++.|.||+||
T Consensus 268 VeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GR 347 (567)
T KOG0345|consen 268 VEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGR 347 (567)
T ss_pred HHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcch
Confidence 3444444432 36789999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hcCCCCceeEEEEeccCcHHHHHHH
Q psy6712 160 SGRFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 160 ~gR~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
+||.|+.|.+++|+.+.+.....-+
T Consensus 348 TaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 348 TARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred hhhccCccceEEEecccHHHHHHHH
Confidence 9999999999999999665554433
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-36 Score=254.44 Aligned_cols=206 Identities=35% Similarity=0.618 Sum_probs=183.0
Q ss_pred CCceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCc
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~ 79 (210)
+|+++..++||.+...+.+.+.. .++|||+||++|++++.++...+++++++||||+|.+.+.++...+..++..++..
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 268 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK 268 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC
Confidence 36889999999998888888754 68999999999999998888899999999999999999988888887777665431
Q ss_pred --hh---------------------------------------------------------------------------H
Q psy6712 80 --TQ---------------------------------------------------------------------------V 82 (210)
Q Consensus 80 --~~---------------------------------------------------------------------------~ 82 (210)
.+ +
T Consensus 269 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 269 EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEV 348 (475)
T ss_pred CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 11 7
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcC
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 162 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR 162 (210)
+.+++.|...++.+..+||+|+.++|.++++.|++|++++||||+++++|+|+|++++||+|++|.+..+|+||+||+||
T Consensus 349 ~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 349 RRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCC
Confidence 88888998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccCCCCC
Q psy6712 163 FGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSLHSYP 207 (210)
Q Consensus 163 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (210)
.|+.|.+++|+.+.|...+..+++.++.++. +.++..+++...|
T Consensus 429 ~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 472 (475)
T PRK01297 429 AGASGVSISFAGEDDAFQLPEIEELLGRKIS-CEMPPAELLKPVP 472 (475)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHhCCCCc-ccCCcHHHhhhhh
Confidence 9999999999999999999999999988873 4555555555444
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-36 Score=250.06 Aligned_cols=200 Identities=67% Similarity=1.101 Sum_probs=181.3
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..+.||.....++..+.++++|+|+||+++.+++.++...+++++++|+||+|++.+.++...+..++..++...+
T Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 124 KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQ 203 (401)
T ss_pred CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcE
Confidence 56788899999988888888889999999999999999988888999999999999999988877666666655443322
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 204 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 204 VALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYL 283 (401)
T ss_pred EEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHH
Confidence 7788
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
++.|.+.++.+..+||+|+.++|..++++|++|++++||||+.+++|+|+|++++||++|+|.+...|+||+||+||.|.
T Consensus 284 ~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 284 TKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 88898889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
.|.|+.++.+.+...++.+++.+...+++.++....
T Consensus 364 ~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 399 (401)
T PTZ00424 364 KGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVAD 399 (401)
T ss_pred CceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhh
Confidence 999999999999999999999999999988776544
No 24
>KOG0339|consensus
Probab=100.00 E-value=3.3e-36 Score=243.47 Aligned_cols=203 Identities=32% Similarity=0.544 Sum_probs=193.1
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
.||+++++|||.+..+|.+.|..+++|+||||+||.+++..+..+++++.++||||+++|++.||..++..|...+.+.+
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdr 402 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDR 402 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred h-----------------------------------------------------------------------------HH
Q psy6712 81 Q-----------------------------------------------------------------------------VD 83 (210)
Q Consensus 81 ~-----------------------------------------------------------------------------~~ 83 (210)
| ++
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAE 482 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHH
Confidence 7 77
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.++..|.-+++++..+||+|.+.+|.+++..|+.+...|||+|+...+|+|+|++..||+||+-.++..|.||+||+||.
T Consensus 483 ~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRa 562 (731)
T KOG0339|consen 483 EIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRA 562 (731)
T ss_pred HHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccc
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccC
Q psy6712 164 GRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 164 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
|..|.++.++.+.+..+.-.+-+.+....+.+|.+.-.+.
T Consensus 563 g~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dla 602 (731)
T KOG0339|consen 563 GEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLA 602 (731)
T ss_pred cccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHH
Confidence 9999999999999999999999999998888887765543
No 25
>KOG0343|consensus
Probab=100.00 E-value=4.9e-36 Score=244.47 Aligned_cols=196 Identities=32% Similarity=0.574 Sum_probs=174.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+.++.+++||.+.+....++ ++.||||||||||+.++... .++.+++.++|+||||+|++.||...++.|+.++|..+
T Consensus 169 ~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R 247 (758)
T KOG0343|consen 169 DFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR 247 (758)
T ss_pred ccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhh
Confidence 45788999999988777665 57899999999999999874 67889999999999999999999999999999999988
Q ss_pred h-----------------------------------------------------------------------------HH
Q psy6712 81 Q-----------------------------------------------------------------------------VD 83 (210)
Q Consensus 81 ~-----------------------------------------------------------------------------~~ 83 (210)
| +.
T Consensus 248 QTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvk 327 (758)
T KOG0343|consen 248 QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVK 327 (758)
T ss_pred eeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHH
Confidence 8 77
Q ss_pred HHHHHHHh--cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 84 WLTEKMRE--ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 84 ~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
++++.+.. -|++...+||.|++..|.++++.|...+.-||+||+++++|+|+|.|++||++|+|.++.+|+||+||++
T Consensus 328 f~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtA 407 (758)
T KOG0343|consen 328 FLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTA 407 (758)
T ss_pred HHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhh
Confidence 77887755 3889999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeccCc-HHHHHHHHHHhcCccccccCCc
Q psy6712 162 RFGRKGVAISFVKSDD-IRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 162 R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
|.+..|.+++++.+.+ ..++..+++.- +.+.++....
T Consensus 408 R~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~ 445 (758)
T KOG0343|consen 408 RYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDP 445 (758)
T ss_pred cccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCH
Confidence 9999999999999988 56677776654 5555554443
No 26
>KOG0348|consensus
Probab=100.00 E-value=2.2e-35 Score=239.82 Aligned_cols=187 Identities=32% Similarity=0.576 Sum_probs=164.6
Q ss_pred eEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhccchHHHHHHHHhhCCC----
Q psy6712 4 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP---- 78 (210)
Q Consensus 4 ~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~---- 78 (210)
--..+.||.+.+....+|++|++|||+|||||.+++.+ +.+.++.++++|+||+|++++.||..++..|++.+..
T Consensus 242 VPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~ 321 (708)
T KOG0348|consen 242 VPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA 321 (708)
T ss_pred eeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch
Confidence 34578999999999999999999999999999999998 6788999999999999999999999999999987732
Q ss_pred ch---------h--------------------------------------------------------------------
Q psy6712 79 AT---------Q-------------------------------------------------------------------- 81 (210)
Q Consensus 79 ~~---------~-------------------------------------------------------------------- 81 (210)
.+ |
T Consensus 322 e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~ 401 (708)
T KOG0348|consen 322 ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYT 401 (708)
T ss_pred hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceE
Confidence 11 1
Q ss_pred ------------------------------------HHHHHHHHHhc----------------------CceEEEecCCC
Q psy6712 82 ------------------------------------VDWLTEKMREA----------------------NFTVSSMHGDM 103 (210)
Q Consensus 82 ------------------------------------~~~l~~~l~~~----------------------~~~~~~~~~~~ 103 (210)
+++-.+.|.+. +.+..-+||+|
T Consensus 402 vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm 481 (708)
T KOG0348|consen 402 VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSM 481 (708)
T ss_pred ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCch
Confidence 44444444331 35788899999
Q ss_pred CHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHH
Q psy6712 104 PQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRD 183 (210)
Q Consensus 104 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~ 183 (210)
++++|..++..|......||+||+.+++|+|+|+|.+||+||+|.+..+|+||+||++|.|..|.+++|+.+.|.+.+..
T Consensus 482 ~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 482 EQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred hHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHhcC
Q psy6712 184 IEQYYST 190 (210)
Q Consensus 184 ~~~~~~~ 190 (210)
++++...
T Consensus 562 l~~~~~~ 568 (708)
T KOG0348|consen 562 LKKHHIM 568 (708)
T ss_pred HHhhcch
Confidence 7765443
No 27
>KOG0347|consensus
Probab=100.00 E-value=1.5e-35 Score=241.46 Aligned_cols=192 Identities=31% Similarity=0.534 Sum_probs=177.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCc---cCCCccEEEechhhHHhccchHHHHHHHHhhCCC
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVL---RTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 78 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~---~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~ 78 (210)
||+++.++||...+.|.+.|...+||+|+|||||+.++..+.. ++++++++|+||+|+|++.|+-+++..++..+..
T Consensus 291 ~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e 370 (731)
T KOG0347|consen 291 QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE 370 (731)
T ss_pred CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh
Confidence 7999999999999999999999999999999999999988654 6789999999999999999999999999887762
Q ss_pred c-----hh------------------------------------------------------------------------
Q psy6712 79 A-----TQ------------------------------------------------------------------------ 81 (210)
Q Consensus 79 ~-----~~------------------------------------------------------------------------ 81 (210)
. +|
T Consensus 371 ~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e 450 (731)
T KOG0347|consen 371 EQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE 450 (731)
T ss_pred hhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc
Confidence 1 11
Q ss_pred -------------------------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC
Q psy6712 82 -------------------------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ 136 (210)
Q Consensus 82 -------------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~ 136 (210)
+..|.-+|...+++...+|+.|.+.+|.+.+++|++....+||||+.+++|+|+|
T Consensus 451 KD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 451 KDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred cceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 7778888888999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccc
Q psy6712 137 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQID 193 (210)
Q Consensus 137 ~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (210)
.++|||||.+|.+..-|+||.||++|.+..|..++++.+.+...+.++.+.++..-+
T Consensus 531 ~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 531 GVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999988866543
No 28
>KOG0327|consensus
Probab=100.00 E-value=1.2e-34 Score=227.49 Aligned_cols=202 Identities=63% Similarity=1.021 Sum_probs=190.2
Q ss_pred CCceEEEEEcCcchHHHHHHhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCc
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~ 79 (210)
++++|+.+.||.+...+-..+. ..++|+++|||++.+.+..+.+..+.++++|+||+|.|+..++.+++..++..+|..
T Consensus 121 ~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~ 200 (397)
T KOG0327|consen 121 MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSD 200 (397)
T ss_pred cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcc
Confidence 5789999999999886665554 479999999999999999998888999999999999999999999999999999887
Q ss_pred hh-------------------------------------------------------------------------HHHHH
Q psy6712 80 TQ-------------------------------------------------------------------------VDWLT 86 (210)
Q Consensus 80 ~~-------------------------------------------------------------------------~~~l~ 86 (210)
.| +.++.
T Consensus 201 vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~ 280 (397)
T KOG0327|consen 201 VQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLT 280 (397)
T ss_pred hhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHHH
Confidence 77 67788
Q ss_pred HHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc
Q psy6712 87 EKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 166 (210)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~ 166 (210)
.+|...+..+..+|+.|.+.+|..++..|+.|..++||+|+..++|+|+.+++.|++|++|....+|+||+||+||.|++
T Consensus 281 ~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk 360 (397)
T KOG0327|consen 281 DKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK 360 (397)
T ss_pred HHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 167 GVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
|.++.++.+.+...++++++++...++++|.+...+
T Consensus 361 g~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 361 GVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred ceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 999999999999999999999999999999987664
No 29
>KOG4284|consensus
Probab=100.00 E-value=3.2e-33 Score=231.61 Aligned_cols=182 Identities=33% Similarity=0.637 Sum_probs=169.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~ 80 (210)
|.+|..++||+.......+++ .++|+||||||+..++..+.++.++++++|+||||.|.+ ..|.+++..|+..+|..+
T Consensus 122 g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r 200 (980)
T KOG4284|consen 122 GARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR 200 (980)
T ss_pred CcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh
Confidence 678999999999998887774 678999999999999999999999999999999999998 689999999999999998
Q ss_pred h-------------------------------------------------------------------------------
Q psy6712 81 Q------------------------------------------------------------------------------- 81 (210)
Q Consensus 81 ~------------------------------------------------------------------------------- 81 (210)
|
T Consensus 201 Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~ 280 (980)
T KOG4284|consen 201 QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCD 280 (980)
T ss_pred eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhh
Confidence 8
Q ss_pred ----HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhh
Q psy6712 82 ----VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 157 (210)
Q Consensus 82 ----~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~ 157 (210)
++.++.+|...|+.+.++.|.|++.+|..+++.++.-..+|||+|+..++|+|-+++++|||.|+|.+...|.||+
T Consensus 281 ~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRI 360 (980)
T KOG4284|consen 281 QISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRI 360 (980)
T ss_pred hhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHh
Confidence 7888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeEEEEeccCcH-HHHHHH
Q psy6712 158 GRSGRFGRKGVAISFVKSDDI-RILRDI 184 (210)
Q Consensus 158 GR~gR~g~~g~~~~~~~~~~~-~~~~~~ 184 (210)
|||||.|..|.++.|+...+. ..+..+
T Consensus 361 GRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 361 GRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999987654 444444
No 30
>KOG0350|consensus
Probab=100.00 E-value=2.8e-32 Score=220.21 Aligned_cols=188 Identities=30% Similarity=0.566 Sum_probs=161.7
Q ss_pred CceEEEEEcCcchHHHHHHhcC-CC----cEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhccchHHHHHHHHhh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY-GQ----HVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY 75 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~-~~----~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~ 75 (210)
|+.|..+.|-.+.+.....|.+ .+ ||||+|||||.+++.+ +.+++++++++||||||+|++..|..++..+...
T Consensus 243 gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~ 322 (620)
T KOG0350|consen 243 GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSL 322 (620)
T ss_pred ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHH
Confidence 6678888999998888888865 33 9999999999999995 7899999999999999999998888877777665
Q ss_pred CCCchh--------------------------------------------------------------------------
Q psy6712 76 LPPATQ-------------------------------------------------------------------------- 81 (210)
Q Consensus 76 ~~~~~~-------------------------------------------------------------------------- 81 (210)
+...+.
T Consensus 323 ~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~ 402 (620)
T KOG0350|consen 323 CKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPS 402 (620)
T ss_pred hCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecCh
Confidence 543311
Q ss_pred ---------------------------------------HHHHHH----HHHhcCceEEEecCCCCHhHHHHHHHHHhcC
Q psy6712 82 ---------------------------------------VDWLTE----KMREANFTVSSMHGDMPQKERDGIMKEFRSG 118 (210)
Q Consensus 82 ---------------------------------------~~~l~~----~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 118 (210)
+..++. .+...+.++..+.|.++...|.+.+++|+.|
T Consensus 403 ~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350|consen 403 SLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred hhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC
Confidence 333333 3445678888899999999999999999999
Q ss_pred CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhc
Q psy6712 119 TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYS 189 (210)
Q Consensus 119 ~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 189 (210)
++.+||||++++||+|+-+++.||+||+|.+...|+||+||++|.|+.|.|+.++...+...+.++-+...
T Consensus 483 ~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 483 DINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred CceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988887776665443
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-31 Score=236.67 Aligned_cols=184 Identities=22% Similarity=0.356 Sum_probs=148.5
Q ss_pred CCceEEEEEcCcchHHHHHHhc------CCCcEEEEChHHHHH--HHHhc--Cc-cCCCccEEEechhhHHhccc--hHH
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD------YGQHVVSGTPGRVFD--MIRRR--VL-RTRNIKMLVLDEADEMLNKG--FKE 67 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~------~~~~Ili~Tp~~l~~--~l~~~--~~-~~~~~~~lviDE~~~l~~~~--~~~ 67 (210)
.||+++.++||.+..++...+. ..++||++||+++.. .+.+. .+ ....+.+|||||||++.+|| |.+
T Consensus 523 ~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 523 ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHH
Confidence 4789999999999887765553 357999999999853 22221 11 23458899999999999987 444
Q ss_pred HHHHH---HhhCC-------------------------------------------------------------------
Q psy6712 68 QIYDV---YRYLP------------------------------------------------------------------- 77 (210)
Q Consensus 68 ~~~~i---~~~~~------------------------------------------------------------------- 77 (210)
....+ ...++
T Consensus 603 dYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~es 682 (1195)
T PLN03137 603 DYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDEC 682 (1195)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCC
Confidence 33221 11111
Q ss_pred ------CchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 78 ------PATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 78 ------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
...+++.+++.|...|+.+..+||+|++++|..+.++|..|+++|||||+++++|+|+|++++||||++|.++.
T Consensus 683 gIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiE 762 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 762 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHH
Confidence 11117888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHH
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
.|+||+|||||.|..|.|++|++..|...++.+
T Consensus 763 sYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 763 GYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred HHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999987666554444
No 32
>KOG0332|consensus
Probab=99.98 E-value=7.2e-32 Score=211.22 Aligned_cols=173 Identities=45% Similarity=0.831 Sum_probs=157.8
Q ss_pred CcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCchh---------------------
Q psy6712 25 QHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPATQ--------------------- 81 (210)
Q Consensus 25 ~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~~--------------------- 81 (210)
.+|+|+|||.+.+++.. +.+++..++.+|+||||.|++ .||.+.-..|...+|+..|
T Consensus 208 eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivp 287 (477)
T KOG0332|consen 208 EQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVP 287 (477)
T ss_pred hheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcC
Confidence 48999999999999888 889999999999999999997 5788777788888776666
Q ss_pred -------------------------------------------------------HHHHHHHHHhcCceEEEecCCCCHh
Q psy6712 82 -------------------------------------------------------VDWLTEKMREANFTVSSMHGDMPQK 106 (210)
Q Consensus 82 -------------------------------------------------------~~~l~~~l~~~~~~~~~~~~~~~~~ 106 (210)
+.++++.+.+.|..+..+||+|..+
T Consensus 288 n~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 288 NANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVE 367 (477)
T ss_pred CCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhH
Confidence 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC------CChhHHHHhhhhhcCCCCceeEEEEeccC-cHH
Q psy6712 107 ERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP------NNRELYIHRIGRSGRFGRKGVAISFVKSD-DIR 179 (210)
Q Consensus 107 ~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p------~s~~~~~q~~GR~gR~g~~g~~~~~~~~~-~~~ 179 (210)
+|..+++.|+.|+.++||+|+.++||+|.+.+++|||||+| .+...|+||+||+||.|+.|.++.+++.. ...
T Consensus 368 ~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 368 QRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred HHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 99999999999999999999999999999999999999999 57999999999999999999999999875 557
Q ss_pred HHHHHHHHhcCccccccC
Q psy6712 180 ILRDIEQYYSTQIDEMPM 197 (210)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (210)
.+.+++++++.....+..
T Consensus 448 ~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 448 IMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred HHHHHHHHHhhcceecCC
Confidence 788999999877766543
No 33
>KOG0334|consensus
Probab=99.97 E-value=1.2e-31 Score=232.26 Aligned_cols=202 Identities=35% Similarity=0.656 Sum_probs=184.9
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCcc---CCCccEEEechhhHHhccchHHHHHHHHhhCC
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLR---TRNIKMLVLDEADEMLNKGFKEQIYDVYRYLP 77 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~---~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~ 77 (210)
+|+++++++||....+|+..+++++.|+|||||++.+++..+.-. +..+-++|+||||+|++.+|.+++..|++.++
T Consensus 465 l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 465 LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR 544 (997)
T ss_pred cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc
Confidence 589999999999999999999999999999999999988775444 44555999999999999999999999999998
Q ss_pred Cchh----------------------------------------------------------------------------
Q psy6712 78 PATQ---------------------------------------------------------------------------- 81 (210)
Q Consensus 78 ~~~~---------------------------------------------------------------------------- 81 (210)
+.+|
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 8887
Q ss_pred -HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 82 -VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 82 -~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
+..+.+.|.+.++++..+||+.++.+|..+++.|+++.+.+||+|+.+++|+|+.+..+|||||+|....+|.||+||+
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRT 704 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRT 704 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccc
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 161 GRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 161 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
||.|+.|.+++|+.+.+....-.+.+.+...-...|..++.+
T Consensus 705 gragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l 746 (997)
T KOG0334|consen 705 GRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQAL 746 (997)
T ss_pred ccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHH
Confidence 999999999999999888888899999877766666554443
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=9.6e-31 Score=220.73 Aligned_cols=184 Identities=21% Similarity=0.345 Sum_probs=146.0
Q ss_pred CCceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHH-HhcCc-cCCCccEEEechhhHHhccc--hHHHHHHH
Q psy6712 1 MNVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMI-RRRVL-RTRNIKMLVLDEADEMLNKG--FKEQIYDV 72 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l-~~~~~-~~~~~~~lviDE~~~l~~~~--~~~~~~~i 72 (210)
+|+++..+.|+.+.+++.. .+.. .++|+++||+++.... ....+ ...+++++||||||++.+|+ |.+....+
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 4788888888877664432 3333 5899999999875422 11122 56789999999999998875 33322211
Q ss_pred ---HhhCC------------------------------------------------------------------------
Q psy6712 73 ---YRYLP------------------------------------------------------------------------ 77 (210)
Q Consensus 73 ---~~~~~------------------------------------------------------------------------ 77 (210)
...++
T Consensus 154 ~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 154 GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEE
Confidence 11111
Q ss_pred -CchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHh
Q psy6712 78 -PATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 156 (210)
Q Consensus 78 -~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~ 156 (210)
....++.+++.|++.++.+..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||++++|.+...|+||
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 1111788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeEEEEeccCcHHHHHHH
Q psy6712 157 IGRSGRFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 157 ~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
+||+||.|..|.|++++++.+...++.+
T Consensus 314 ~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 314 SGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred hcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 9999999999999999998776655544
No 35
>KOG0346|consensus
Probab=99.97 E-value=5.6e-31 Score=210.01 Aligned_cols=188 Identities=27% Similarity=0.405 Sum_probs=165.4
Q ss_pred eEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcC-ccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh-
Q psy6712 4 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRV-LRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ- 81 (210)
Q Consensus 4 ~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~-~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~- 81 (210)
+++-++...+...+...|...|||+|+||++++.++..+. ..+..+.++|+||||.++..||.+++.++...+|+..|
T Consensus 125 r~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~ 204 (569)
T KOG0346|consen 125 RAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQC 204 (569)
T ss_pred hhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhh
Confidence 4444555666666667788899999999999999999987 67889999999999999999999999999999999888
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
+-.+
T Consensus 205 ~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrL 284 (569)
T KOG0346|consen 205 FLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRL 284 (569)
T ss_pred eeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHH
Confidence 4444
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-----------------------------------Ccc
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-----------------------------------VWA 130 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----------------------------------~~~ 130 (210)
--.|+.-|++.+.++|+||...|..++++|+.|-++++|||+ -++
T Consensus 285 kLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVs 364 (569)
T KOG0346|consen 285 KLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVS 364 (569)
T ss_pred HHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchh
Confidence 555666799999999999999999999999999999999998 245
Q ss_pred ccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCc
Q psy6712 131 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQ 191 (210)
Q Consensus 131 ~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (210)
+|+|+.+|.+|+|||+|.++..|+||+||++|.++.|.+++|+.+.+..-...++..+...
T Consensus 365 RGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 365 RGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred ccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 8999999999999999999999999999999999999999999999888667777666554
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=3e-30 Score=226.68 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=150.2
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc----CccCCCccEEEechhhHHhccchHHHHHHHHh---
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR----VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYR--- 74 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~--- 74 (210)
++++..+.|+.+. ++.+.+.++++|+|+||+++...+... ...+++++++|+||+|.+.+ .|...+..++.
T Consensus 108 ~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ 185 (742)
T TIGR03817 108 GVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLR 185 (742)
T ss_pred CeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHH
Confidence 5788888888774 455677788999999999987543321 12378999999999999854 12222111110
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 75 -------------------------------------------------------------------------------- 74 (210)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (210)
T Consensus 186 ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~ 265 (742)
T TIGR03817 186 RLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLA 265 (742)
T ss_pred HHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHH
Confidence
Q ss_pred -----------hCCCchhHHHHHHHHHhc--------CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCC
Q psy6712 75 -----------YLPPATQVDWLTEKMREA--------NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV 135 (210)
Q Consensus 75 -----------~~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~ 135 (210)
|++....++.+++.+++. +.++..+||+|++++|++++++|++|++++||||+++++|+|+
T Consensus 266 ~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI 345 (742)
T TIGR03817 266 DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDI 345 (742)
T ss_pred HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCc
Confidence 111111155566655442 5678899999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEec--cCcHHHHHHHHHHhcCccccccCC
Q psy6712 136 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVK--SDDIRILRDIEQYYSTQIDEMPMN 198 (210)
Q Consensus 136 ~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 198 (210)
|++++||++++|.+..+|+||+||+||.|+.|.++++.. +.|...+...++.++..++....+
T Consensus 346 ~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~ 410 (742)
T TIGR03817 346 SGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFD 410 (742)
T ss_pred ccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeC
Confidence 999999999999999999999999999999999999986 346667777788888877665443
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.2e-29 Score=219.49 Aligned_cols=183 Identities=20% Similarity=0.323 Sum_probs=145.8
Q ss_pred CCceEEEEEcCcchHHHHHH---hc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc--hHHHH---HH
Q psy6712 1 MNVQCHACIGGTNLSEDLRK---LD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG--FKEQI---YD 71 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~---l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~--~~~~~---~~ 71 (210)
+|+.+..+.++.+.+++... +. ...+++++||+++........+...+++++|+||||++.+|+ |.+.. ..
T Consensus 88 ~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~ 167 (607)
T PRK11057 88 NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQ 167 (607)
T ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHH
Confidence 36788888888877665432 33 357999999999874222223445678999999999998875 33222 11
Q ss_pred HHhhCCC-----------------------------------------------------------------------ch
Q psy6712 72 VYRYLPP-----------------------------------------------------------------------AT 80 (210)
Q Consensus 72 i~~~~~~-----------------------------------------------------------------------~~ 80 (210)
+...++. ..
T Consensus 168 l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~ 247 (607)
T PRK11057 168 LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRA 247 (607)
T ss_pred HHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHH
Confidence 1111111 11
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
.++.+++.|++.++++..+|++|++++|.++++.|++|+++|||||+++++|+|+|++++||+||+|.|..+|+||+|||
T Consensus 248 ~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRa 327 (607)
T PRK11057 248 KVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (607)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhc
Confidence 18889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccCcHHHHHH
Q psy6712 161 GRFGRKGVAISFVKSDDIRILRD 183 (210)
Q Consensus 161 gR~g~~g~~~~~~~~~~~~~~~~ 183 (210)
||.|..|.|++|+++.+...++.
T Consensus 328 GR~G~~~~~ill~~~~d~~~~~~ 350 (607)
T PRK11057 328 GRDGLPAEAMLFYDPADMAWLRR 350 (607)
T ss_pred cCCCCCceEEEEeCHHHHHHHHH
Confidence 99999999999999877655443
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=1e-29 Score=220.02 Aligned_cols=182 Identities=24% Similarity=0.358 Sum_probs=148.2
Q ss_pred CCceEEEEEcCcchHHHHHH---hc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc--hHHHHHHH--
Q psy6712 1 MNVQCHACIGGTNLSEDLRK---LD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG--FKEQIYDV-- 72 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~---l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~--~~~~~~~i-- 72 (210)
+|+++..++|+.+.+++... +. ..++|+++||+++........+...+++++|+||||++.+|+ |.+....+
T Consensus 76 ~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 76 AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 47889999999887765432 33 467999999999875444444566789999999999998875 33333222
Q ss_pred -HhhCCCc-----------------------------------------------------------------------h
Q psy6712 73 -YRYLPPA-----------------------------------------------------------------------T 80 (210)
Q Consensus 73 -~~~~~~~-----------------------------------------------------------------------~ 80 (210)
...++.. .
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~ 235 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRK 235 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 1111110 0
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
.++.+++.|...++++..+|++|+.++|..+.+.|.+|++++||||+++++|+|+|++++||+|++|.|...|.|++||+
T Consensus 236 ~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRa 315 (591)
T TIGR01389 236 KVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315 (591)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccc
Confidence 18889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccCcHHHHH
Q psy6712 161 GRFGRKGVAISFVKSDDIRILR 182 (210)
Q Consensus 161 gR~g~~g~~~~~~~~~~~~~~~ 182 (210)
||.|..+.|++++++.+...++
T Consensus 316 GR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 316 GRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred cCCCCCceEEEecCHHHHHHHH
Confidence 9999999999999877655443
No 39
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.4e-29 Score=210.35 Aligned_cols=186 Identities=25% Similarity=0.404 Sum_probs=153.0
Q ss_pred CCceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc--hHHHHHHHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG--FKEQIYDVYR 74 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~--~~~~~~~i~~ 74 (210)
.||+++.+++..+.++....+ .. ..++|.-+|+++..---...+.-..+.+++|||||++.+|| |+++...+-.
T Consensus 80 ~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 80 AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 478999999998877655333 33 47999999999776433333345678899999999999997 5544433322
Q ss_pred h---CC-------------------------------------------------------------------------C
Q psy6712 75 Y---LP-------------------------------------------------------------------------P 78 (210)
Q Consensus 75 ~---~~-------------------------------------------------------------------------~ 78 (210)
. ++ .
T Consensus 160 l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~s 239 (590)
T COG0514 160 LRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLT 239 (590)
T ss_pred HHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEee
Confidence 1 11 1
Q ss_pred chhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 79 ATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
.+.++.++++|...|+++..+|++|+.++|..+.++|..++.+|+|||.++++|+|-|++.+|||||+|.|+.+|.|.+|
T Consensus 240 Rk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~G 319 (590)
T COG0514 240 RKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETG 319 (590)
T ss_pred HHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHh
Confidence 11189999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeEEEEeccCcHHHHHHHHH
Q psy6712 159 RSGRFGRKGVAISFVKSDDIRILRDIEQ 186 (210)
Q Consensus 159 R~gR~g~~g~~~~~~~~~~~~~~~~~~~ 186 (210)
||||+|..+.|++|+++.|....+.+.+
T Consensus 320 RAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 320 RAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred hccCCCCcceEEEeeccccHHHHHHHHH
Confidence 9999999999999999988765554443
No 40
>KOG0337|consensus
Probab=99.96 E-value=2.9e-30 Score=204.96 Aligned_cols=193 Identities=30% Similarity=0.530 Sum_probs=182.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
+.++++++||.+..+|+..+.+++|||++||+++..+...-.+.++.+.++|+||+|.+++.||.+++.+++..++...|
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~Q 197 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQ 197 (529)
T ss_pred chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcce
Confidence 56789999999999999999999999999999999887776788999999999999999999999999999999988777
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 198 TllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~ 277 (529)
T KOG0337|consen 198 TLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYV 277 (529)
T ss_pred EEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHH
Confidence 8889
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
.+.|+..|+.+..++|.|++..|......|+.++..++|.|+.+++|+|+|-.+.||+||+|.+..-|.||+||+.|.|+
T Consensus 278 ~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 278 RGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred HHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCcccc
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
.|.++.++.+.+...+-.+..+++.++.-
T Consensus 358 tg~aYs~V~~~~~~yl~DL~lflgr~~~~ 386 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDLQLFLGRPLIF 386 (529)
T ss_pred cceEEEEEecccchhhhhhhhhcCCceee
Confidence 99999999999999999999888876654
No 41
>KOG0344|consensus
Probab=99.96 E-value=4.8e-29 Score=205.07 Aligned_cols=175 Identities=38% Similarity=0.591 Sum_probs=156.8
Q ss_pred cCCCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhcc-chHHHHHHHHhhCCCchh-----------------
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQ----------------- 81 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~~-~~~~~~~~i~~~~~~~~~----------------- 81 (210)
...++|+++||-++..++..+. ++++.+.++|+||+|.+++. .|..++..|+..+....-
T Consensus 260 ~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~ 339 (593)
T KOG0344|consen 260 DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWA 339 (593)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHH
Confidence 3467999999999999998876 78999999999999999998 888888888876643221
Q ss_pred ------------------------------------------------------------HHHHHHHH-HhcCceEEEec
Q psy6712 82 ------------------------------------------------------------VDWLTEKM-REANFTVSSMH 100 (210)
Q Consensus 82 ------------------------------------------------------------~~~l~~~l-~~~~~~~~~~~ 100 (210)
+..|.+.| .-.++++.++|
T Consensus 340 ~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 340 ELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred HHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 77788888 56789999999
Q ss_pred CCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHH
Q psy6712 101 GDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRI 180 (210)
Q Consensus 101 ~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~ 180 (210)
|+.++.+|.+++++|+.|++++|+||+.+++|+|+.+++.||+||+|.+..+|+||+||+||.|+.|.++.|+...+...
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccc
Q psy6712 181 LRDIEQYYSTQIDEMP 196 (210)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (210)
++-+.+.+..+.-++|
T Consensus 500 ir~iae~~~~sG~evp 515 (593)
T KOG0344|consen 500 IRSIAEVMEQSGCEVP 515 (593)
T ss_pred hhhHHHHHHHcCCcch
Confidence 8888877766555554
No 42
>KOG0329|consensus
Probab=99.96 E-value=1.3e-28 Score=184.77 Aligned_cols=193 Identities=35% Similarity=0.703 Sum_probs=152.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~ 80 (210)
+++|++++||.+.+.....+++-|+|+|+||||++.+.+++.+++++++++|+||||.|++ ..+.+++.+|+..+|..+
T Consensus 139 ~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 5789999999999999999999999999999999999999999999999999999999996 478999999999999888
Q ss_pred hH-----------HHHHHHHHhcCceE-------EEecCCC----CHhHHHHHHH-----------------------HH
Q psy6712 81 QV-----------DWLTEKMREANFTV-------SSMHGDM----PQKERDGIMK-----------------------EF 115 (210)
Q Consensus 81 ~~-----------~~l~~~l~~~~~~~-------~~~~~~~----~~~~r~~~~~-----------------------~f 115 (210)
|+ .-++..+.+....+ ..+||-. ..++.++..+ .|
T Consensus 219 QvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~f 298 (387)
T KOG0329|consen 219 QVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLSF 298 (387)
T ss_pred eeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhhh
Confidence 82 22222222211111 1122210 0000000000 02
Q ss_pred hcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccC-cHHHHHHHHHHhcCcccc
Q psy6712 116 RSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSD-DIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 116 ~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (210)
.-+ +|+|+.+++|+|+..+++++|||+|.+.++|+||.|||||.|..|.++.|++.. +...+......+...+.+
T Consensus 299 ---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~e 374 (387)
T KOG0329|consen 299 ---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKE 374 (387)
T ss_pred ---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhh
Confidence 113 899999999999999999999999999999999999999999999999999874 667788888889999999
Q ss_pred ccCC
Q psy6712 195 MPMN 198 (210)
Q Consensus 195 ~~~~ 198 (210)
+|.+
T Consensus 375 Lpde 378 (387)
T KOG0329|consen 375 LPDE 378 (387)
T ss_pred cCcc
Confidence 8877
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=1.1e-27 Score=214.04 Aligned_cols=173 Identities=16% Similarity=0.288 Sum_probs=137.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCc--cCCCccEEEechhhHHhccchHHH----HHHHHh-
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVL--RTRNIKMLVLDEADEMLNKGFKEQ----IYDVYR- 74 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~--~~~~~~~lviDE~~~l~~~~~~~~----~~~i~~- 74 (210)
+++++.++|+.+..++.+.+.+.++|+|+||+++..++.+... .+++++++|+||+|.+.+...... +..+..
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 5789999999999988888888999999999999887766543 578999999999999985432111 111110
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 75 -------------------------------------------------------------------------------- 74 (210)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (210)
T Consensus 204 ~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~ 283 (876)
T PRK13767 204 AGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE 283 (876)
T ss_pred cCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhc
Confidence
Q ss_pred ------hCCCchhHHHHHHHHHh------cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE
Q psy6712 75 ------YLPPATQVDWLTEKMRE------ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI 142 (210)
Q Consensus 75 ------~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi 142 (210)
|++...+++.+++.|.+ .+..+.++||+|++++|..++++|++|++++||||+.+++|+|+|++++||
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE
Confidence 00111116666666655 246799999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhHHHHhhhhhcCCC-CceeEEEEec
Q psy6712 143 NYDLPNNRELYIHRIGRSGRFG-RKGVAISFVK 174 (210)
Q Consensus 143 ~~~~p~s~~~~~q~~GR~gR~g-~~g~~~~~~~ 174 (210)
+++.|.+..+|+||+||+||.+ ..+.+.++..
T Consensus 364 ~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 364 LLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred EeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999874 3344444443
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2.3e-27 Score=216.88 Aligned_cols=194 Identities=21% Similarity=0.336 Sum_probs=147.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhcc--c--hHHHHHHHH---
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNK--G--FKEQIYDVY--- 73 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~--~--~~~~~~~i~--- 73 (210)
+++|..++|+++.+++.+.+++.+||||+||++|..++.++ ...++++++||+||+|.+.+. | +...+..+.
T Consensus 77 ~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 77 NLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred ceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 68999999999999988888889999999999999887764 346899999999999999854 2 111111111
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 74 -------------------------------------------------------------------------------- 73 (210)
Q Consensus 74 -------------------------------------------------------------------------------- 73 (210)
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence
Q ss_pred ------------hhCCCchhHHHHHHHHHhcC---------------------------------ceEEEecCCCCHhHH
Q psy6712 74 ------------RYLPPATQVDWLTEKMREAN---------------------------------FTVSSMHGDMPQKER 108 (210)
Q Consensus 74 ------------~~~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r 108 (210)
.|++....++.++..|.+.. ..+..+||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 12222222566666664421 125789999999999
Q ss_pred HHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC-CCceeEEEEeccCcHHH---HHHH
Q psy6712 109 DGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF-GRKGVAISFVKSDDIRI---LRDI 184 (210)
Q Consensus 109 ~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~-g~~g~~~~~~~~~~~~~---~~~~ 184 (210)
..++++|++|++++||||+.+++|+|++++++||+++.|.++.+|+||+||+||. |..+.++++.... .+. ...+
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r-~dlle~~~~v 395 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR-RDLVDSAVIV 395 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-HHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 3345555444332 222 2235
Q ss_pred HHHhcCcccccc
Q psy6712 185 EQYYSTQIDEMP 196 (210)
Q Consensus 185 ~~~~~~~~~~~~ 196 (210)
+.+++..++.+.
T Consensus 396 e~~l~g~iE~~~ 407 (1490)
T PRK09751 396 ECMFAGRLENLT 407 (1490)
T ss_pred HHHhcCCCCccC
Confidence 667776666643
No 45
>KOG0349|consensus
Probab=99.95 E-value=4e-27 Score=188.25 Aligned_cols=204 Identities=32% Similarity=0.592 Sum_probs=180.5
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh-
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ- 81 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~- 81 (210)
++..+++||...+.|.+.+.++.||+|+||+|+.+.+..+.+.+.+++++++||++.++..++.+.+..+...+|....
T Consensus 318 ~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd 397 (725)
T KOG0349|consen 318 VRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD 397 (725)
T ss_pred hhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC
Confidence 3566889999999999999999999999999999999999999999999999999999999999988888777665443
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 82 -------------------------------------------------------------------------------- 81 (210)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (210)
T Consensus 398 g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg 477 (725)
T KOG0349|consen 398 GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPG 477 (725)
T ss_pred CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccc
Confidence
Q ss_pred ----------------------------------------HHHHHHHHHhc---CceEEEecCCCCHhHHHHHHHHHhcC
Q psy6712 82 ----------------------------------------VDWLTEKMREA---NFTVSSMHGDMPQKERDGIMKEFRSG 118 (210)
Q Consensus 82 ----------------------------------------~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g 118 (210)
++.|.+.+.++ ++.+.++||+..+++|++.+++|+.+
T Consensus 478 ~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~ 557 (725)
T KOG0349|consen 478 QVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF 557 (725)
T ss_pred cCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc
Confidence 67888888775 47999999999999999999999999
Q ss_pred CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEecc-----------------------
Q psy6712 119 TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKS----------------------- 175 (210)
Q Consensus 119 ~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~----------------------- 175 (210)
+.+.||||+.+++|+|+..+.++|+.-+|.+...|.||+||+||..+-|.+++++..
T Consensus 558 dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~ 637 (725)
T KOG0349|consen 558 DVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLT 637 (725)
T ss_pred CeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccc
Confidence 999999999999999999999999999999999999999999998777777777631
Q ss_pred ---------CcHHHHHHHHHHhcCccccccCCccccCCCC
Q psy6712 176 ---------DDIRILRDIEQYYSTQIDEMPMNGKRSLHSY 206 (210)
Q Consensus 176 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (210)
.+...+.++|.++++.++++...+.-..+-|
T Consensus 638 e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~f 677 (725)
T KOG0349|consen 638 EVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDF 677 (725)
T ss_pred cccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCccccc
Confidence 3567888999999999999887766544443
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.94 E-value=1.5e-25 Score=196.17 Aligned_cols=170 Identities=20% Similarity=0.310 Sum_probs=129.7
Q ss_pred CCceEEEEEcCcchH---HHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchH----------
Q psy6712 1 MNVQCHACIGGTNLS---EDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFK---------- 66 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~---~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~---------- 66 (210)
+|+++..++||.+.. +++..+.+ .++|+||||+.+.+ .+.+++++++|+||+|++......
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~ 411 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQRLALREKGENPH 411 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHHHHHHHhcCCCCC
Confidence 478999999999854 34455655 48999999987643 356789999999999986321100
Q ss_pred ----------HHH-------------------------------------HHHHh----------hCCC--------chh
Q psy6712 67 ----------EQI-------------------------------------YDVYR----------YLPP--------ATQ 81 (210)
Q Consensus 67 ----------~~~-------------------------------------~~i~~----------~~~~--------~~~ 81 (210)
..+ ..+.. +++. ...
T Consensus 412 iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~ 491 (681)
T PRK10917 412 VLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQS 491 (681)
T ss_pred EEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHH
Confidence 000 00000 0000 000
Q ss_pred HHHHHHHHHhc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHHhhh
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q~~G 158 (210)
++.+++.|.+. +.++..+||+|+.++|.+++++|++|+.+|||||+++++|+|+|++++||++++|. ..+.+.|++|
T Consensus 492 ~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~G 571 (681)
T PRK10917 492 AEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRG 571 (681)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhh
Confidence 33455566544 46899999999999999999999999999999999999999999999999999997 5788889999
Q ss_pred hhcCCCCceeEEEEecc
Q psy6712 159 RSGRFGRKGVAISFVKS 175 (210)
Q Consensus 159 R~gR~g~~g~~~~~~~~ 175 (210)
|+||.|..|.|++++..
T Consensus 572 RvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 572 RVGRGAAQSYCVLLYKD 588 (681)
T ss_pred cccCCCCceEEEEEECC
Confidence 99999999999999953
No 47
>PRK02362 ski2-like helicase; Provisional
Probab=99.94 E-value=7.4e-26 Score=200.15 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=134.1
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC---CC
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL---PP 78 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~---~~ 78 (210)
|++|..++|+.+.+.+ ....++|+|+||+++..+++++...+++++++|+||+|.+.+.++...+..++..+ ..
T Consensus 94 g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 94 GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 7899999999876542 23468999999999999988766668899999999999987654443332222111 00
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 79 -------------------------------------------------------------------------------- 78 (210)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (210)
T Consensus 171 ~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~ 250 (737)
T PRK02362 171 DLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFV 250 (737)
T ss_pred CCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEE
Confidence
Q ss_pred --chhHHHHHHHHHhc------------------------------------CceEEEecCCCCHhHHHHHHHHHhcCCC
Q psy6712 79 --ATQVDWLTEKMREA------------------------------------NFTVSSMHGDMPQKERDGIMKEFRSGTS 120 (210)
Q Consensus 79 --~~~~~~l~~~l~~~------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 120 (210)
..+++.+++.|... ...+.++|++|++.+|..+++.|++|.+
T Consensus 251 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i 330 (737)
T PRK02362 251 SSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLI 330 (737)
T ss_pred eCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCC
Confidence 00033333333211 1368899999999999999999999999
Q ss_pred cEEEEecCccccCCCCCCcEEEE----ec-----CCCChhHHHHhhhhhcCCCCc--eeEEEEeccCc
Q psy6712 121 RVLITTDVWARGIDVQQVSLVIN----YD-----LPNNRELYIHRIGRSGRFGRK--GVAISFVKSDD 177 (210)
Q Consensus 121 ~ilv~T~~~~~g~d~~~~~~vi~----~~-----~p~s~~~~~q~~GR~gR~g~~--g~~~~~~~~~~ 177 (210)
++||||+.+++|+|+|..++||. || .|.+..+|.||+|||||.|.+ |.+++++.+.+
T Consensus 331 ~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 331 KVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred eEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 99999999999999999999997 66 588999999999999999874 89999987653
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=2.3e-25 Score=198.44 Aligned_cols=169 Identities=21% Similarity=0.311 Sum_probs=131.8
Q ss_pred CceEEEEEcCcchHHH---HHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHH-----
Q psy6712 2 NVQCHACIGGTNLSED---LRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDV----- 72 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~---~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i----- 72 (210)
++++..++|+.+.+++ ...+.. .+|||||||.. + .+.+.+++++++|+||+|++.... .+.+..+
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfgv~~-~~~L~~~~~~~~ 601 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFGVKQ-KEKLKELRTSVD 601 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccchhH-HHHHHhcCCCCC
Confidence 6788999998875544 344545 58999999942 2 456788999999999999863211 1111000
Q ss_pred ----------------------------------------------------H----------hhCCCchhHHHHHHHHH
Q psy6712 73 ----------------------------------------------------Y----------RYLPPATQVDWLTEKMR 90 (210)
Q Consensus 73 ----------------------------------------------------~----------~~~~~~~~~~~l~~~l~ 90 (210)
. .+++....++.+++.|+
T Consensus 602 vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~ 681 (926)
T TIGR00580 602 VLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLR 681 (926)
T ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHH
Confidence 0 01111111667777787
Q ss_pred hc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHHhhhhhcCCCCce
Q psy6712 91 EA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q~~GR~gR~g~~g 167 (210)
+. +.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++++|. +..+|.||+||+||.|+.|
T Consensus 682 ~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g 761 (926)
T TIGR00580 682 ELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA 761 (926)
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe
Confidence 63 78999999999999999999999999999999999999999999999999999875 6789999999999999999
Q ss_pred eEEEEeccC
Q psy6712 168 VAISFVKSD 176 (210)
Q Consensus 168 ~~~~~~~~~ 176 (210)
.|++++.+.
T Consensus 762 ~aill~~~~ 770 (926)
T TIGR00580 762 YAYLLYPHQ 770 (926)
T ss_pred EEEEEECCc
Confidence 999999653
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=3.8e-25 Score=192.33 Aligned_cols=169 Identities=22% Similarity=0.396 Sum_probs=128.7
Q ss_pred CCceEEEEEcCcchHH---HHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc--------cch---
Q psy6712 1 MNVQCHACIGGTNLSE---DLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN--------KGF--- 65 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~---~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~--------~~~--- 65 (210)
+|++++.++||.+..+ ++..+.+ .++|+|+||+.+.+ .+.+++++++|+||+|++.. .+.
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~ 385 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGF 385 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHHHHHHHhcccCC
Confidence 3789999999988665 4555554 58999999987643 35678999999999998421 110
Q ss_pred H------------HHHH-H--------HHhhCCCc---------------------------------------------
Q psy6712 66 K------------EQIY-D--------VYRYLPPA--------------------------------------------- 79 (210)
Q Consensus 66 ~------------~~~~-~--------i~~~~~~~--------------------------------------------- 79 (210)
. ..+. . .+...+..
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~ 465 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLD 465 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccch
Confidence 0 0000 0 00000000
Q ss_pred -hhHHHHHHHHHh--cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHH
Q psy6712 80 -TQVDWLTEKMRE--ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIH 155 (210)
Q Consensus 80 -~~~~~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q 155 (210)
..++.+++.|.+ .++++..+||+|+.++|..++++|++|+.+|||||+++++|+|+|++++||++++|. +...|.|
T Consensus 466 ~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ 545 (630)
T TIGR00643 466 LKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQ 545 (630)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHH
Confidence 003345555554 367899999999999999999999999999999999999999999999999999986 6788889
Q ss_pred hhhhhcCCCCceeEEEEec
Q psy6712 156 RIGRSGRFGRKGVAISFVK 174 (210)
Q Consensus 156 ~~GR~gR~g~~g~~~~~~~ 174 (210)
++||+||.|..|.|++++.
T Consensus 546 ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 546 LRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HhhhcccCCCCcEEEEEEC
Confidence 9999999999999999993
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=5.7e-25 Score=178.85 Aligned_cols=94 Identities=31% Similarity=0.497 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCceEE--Ee-------cCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhH
Q psy6712 82 VDWLTEKMREANFTVS--SM-------HGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNREL 152 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~--~~-------~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~ 152 (210)
++.+.+.|.+.+..+. ++ ..||++.++.+++++|++|++++||||++.++|+|+|+++.||+|++-+|...
T Consensus 379 ae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 379 AEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHH
Confidence 7778888887777663 22 24699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCceeEEEEeccC
Q psy6712 153 YIHRIGRSGRFGRKGVAISFVKSD 176 (210)
Q Consensus 153 ~~q~~GR~gR~g~~g~~~~~~~~~ 176 (210)
++||.||+||. +.|.+++++...
T Consensus 459 ~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 459 SIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred HHHhhCccccC-CCCeEEEEEecC
Confidence 99999999998 889999999876
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.93 E-value=1.3e-24 Score=197.30 Aligned_cols=168 Identities=19% Similarity=0.255 Sum_probs=130.0
Q ss_pred CceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHH-----
Q psy6712 2 NVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDV----- 72 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i----- 72 (210)
++++..++|+.+..++...+ .+ +++|+||||+.+ ++.+.+++++++|+||+|++... ....+..+
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~~-~~e~lk~l~~~~q 750 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGVR-HKERIKAMRADVD 750 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcchh-HHHHHHhcCCCCc
Confidence 57888999998877766544 33 689999999632 34567889999999999998421 11111000
Q ss_pred ----------------------------------------------------Hh----------hCCCchhHHHHHHHHH
Q psy6712 73 ----------------------------------------------------YR----------YLPPATQVDWLTEKMR 90 (210)
Q Consensus 73 ----------------------------------------------------~~----------~~~~~~~~~~l~~~l~ 90 (210)
+. +++....++.+++.|.
T Consensus 751 vLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~ 830 (1147)
T PRK10689 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 (1147)
T ss_pred EEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH
Confidence 00 0111111566777777
Q ss_pred hc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC-CChhHHHHhhhhhcCCCCce
Q psy6712 91 EA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p-~s~~~~~q~~GR~gR~g~~g 167 (210)
+. +.++..+||+|++++|.+++.+|++|+++|||||+++++|+|+|++++||..+.+ .+..+|.||+||+||.|..|
T Consensus 831 ~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred HhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 65 6789999999999999999999999999999999999999999999999976554 46788999999999999999
Q ss_pred eEEEEecc
Q psy6712 168 VAISFVKS 175 (210)
Q Consensus 168 ~~~~~~~~ 175 (210)
.|++++..
T Consensus 911 ~a~ll~~~ 918 (1147)
T PRK10689 911 YAWLLTPH 918 (1147)
T ss_pred EEEEEeCC
Confidence 99999864
No 52
>PRK00254 ski2-like helicase; Provisional
Probab=99.93 E-value=7.1e-25 Score=193.50 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=132.9
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
+|++|..++|+.+.+.++ ..+++|+|+||+++..++.++...+++++++|+||+|.+.+.++...+..++..+....
T Consensus 94 ~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 94 LGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred cCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 478999999998765432 25689999999999998887766789999999999999876554444433333221111
Q ss_pred h-------------------------------------------------------------------------------
Q psy6712 81 Q------------------------------------------------------------------------------- 81 (210)
Q Consensus 81 ~------------------------------------------------------------------------------- 81 (210)
+
T Consensus 171 qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~ 250 (720)
T PRK00254 171 QILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRS 250 (720)
T ss_pred cEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHH
Confidence 1
Q ss_pred HHHHHHHHHh---------------------------------cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 82 VDWLTEKMRE---------------------------------ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 82 ~~~l~~~l~~---------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++.++..|.. ....+.++|++|++++|..+.+.|++|.+++||||+.
T Consensus 251 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~t 330 (720)
T PRK00254 251 AEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPT 330 (720)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcH
Confidence 2222222211 0235899999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEE-------ecCC-CChhHHHHhhhhhcCCC--CceeEEEEeccCc
Q psy6712 129 WARGIDVQQVSLVIN-------YDLP-NNRELYIHRIGRSGRFG--RKGVAISFVKSDD 177 (210)
Q Consensus 129 ~~~g~d~~~~~~vi~-------~~~p-~s~~~~~q~~GR~gR~g--~~g~~~~~~~~~~ 177 (210)
+++|+|+|.+++||. ++.| .+..+|.||+|||||.| ..|.+++++.+.+
T Consensus 331 La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 331 LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999994 4443 35779999999999976 4689999987654
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.92 E-value=2.8e-24 Score=186.72 Aligned_cols=175 Identities=18% Similarity=0.335 Sum_probs=147.4
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCc--cCCCccEEEechhhHHhccchHH----HHHHHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVL--RTRNIKMLVLDEADEMLNKGFKE----QIYDVYR 74 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~--~~~~~~~lviDE~~~l~~~~~~~----~~~~i~~ 74 (210)
+|+.+...+|+++..+..+..++.|||||+||+.|.-++..+++ .+++++++|+||.|.+.++...- .+..+..
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~ 179 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRE 179 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHh
Confidence 68899999999999999999999999999999998888877543 58999999999999998653221 1122222
Q ss_pred hCC-----------------------------------------------------------------------------
Q psy6712 75 YLP----------------------------------------------------------------------------- 77 (210)
Q Consensus 75 ~~~----------------------------------------------------------------------------- 77 (210)
+.+
T Consensus 180 l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF 259 (814)
T COG1201 180 LAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIF 259 (814)
T ss_pred hCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEE
Confidence 221
Q ss_pred --CchhHHHHHHHHHhcC-ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHH
Q psy6712 78 --PATQVDWLTEKMREAN-FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 154 (210)
Q Consensus 78 --~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~ 154 (210)
...+++.++..|++.+ ..+..+||.++.++|..+.++|++|+.+.+|||+.++.|+|+.+++.||+++.|.++...+
T Consensus 260 ~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 260 TNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred EeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 1111888888888776 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCC-CCceeEEEEecc
Q psy6712 155 HRIGRSGRF-GRKGVAISFVKS 175 (210)
Q Consensus 155 q~~GR~gR~-g~~g~~~~~~~~ 175 (210)
||+||+|+. +..++.+++...
T Consensus 340 QRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 340 QRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhccccccccCCcccEEEEecC
Confidence 999999965 556777777766
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.92 E-value=5.4e-24 Score=185.87 Aligned_cols=161 Identities=25% Similarity=0.353 Sum_probs=131.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCc----------------cCCCccEEEechhhHHhccch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVL----------------RTRNIKMLVLDEADEMLNKGF 65 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~----------------~~~~~~~lviDE~~~l~~~~~ 65 (210)
+++|..++||.+.+.|+..++.+++|||||++ ++.++.+ .+++++++|+|||| ++.+|
T Consensus 113 ~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF 186 (844)
T TIGR02621 113 PLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAF 186 (844)
T ss_pred CeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccccccchhhhhccceEEEEehhh--hcccc
Confidence 48899999999999999999999999999964 4445444 27889999999999 67889
Q ss_pred HHHHHHHHhhC--CCc---hh-----------------------------------------------------------
Q psy6712 66 KEQIYDVYRYL--PPA---TQ----------------------------------------------------------- 81 (210)
Q Consensus 66 ~~~~~~i~~~~--~~~---~~----------------------------------------------------------- 81 (210)
.+.+..|+..+ +.. .|
T Consensus 187 ~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 187 QELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNL 266 (844)
T ss_pred HHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHH
Confidence 99999999864 221 22
Q ss_pred ------------------HHHHHHHHHhcCceEEEecCCCCHhHHH-----HHHHHHhc----CC-------CcEEEEec
Q psy6712 82 ------------------VDWLTEKMREANFTVSSMHGDMPQKERD-----GIMKEFRS----GT-------SRVLITTD 127 (210)
Q Consensus 82 ------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~ilv~T~ 127 (210)
++.+++.|++.++ ..+||+|++.+|. .++++|++ |+ ..+||||+
T Consensus 267 ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 267 LMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred HHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 6667777766665 8999999999999 88999987 44 68999999
Q ss_pred CccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc-eeEEEEe
Q psy6712 128 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK-GVAISFV 173 (210)
Q Consensus 128 ~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~-g~~~~~~ 173 (210)
++++|+|++. ++||++..| ...|+||+||+||.|.. +..+.++
T Consensus 345 VaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999986 888887766 68999999999999884 3334444
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.91 E-value=1.9e-23 Score=183.53 Aligned_cols=183 Identities=19% Similarity=0.233 Sum_probs=132.5
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhh-----
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY----- 75 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~----- 75 (210)
+|++|...+|+.+.... ....+||+|+||+++..++.+....+++++++|+||+|.+.+.++...+..++..
T Consensus 91 ~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 91 LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 37788899998775432 2346799999999999888876666889999999999998765443333322211
Q ss_pred ---------------------------------------------------------------------------CCCch
Q psy6712 76 ---------------------------------------------------------------------------LPPAT 80 (210)
Q Consensus 76 ---------------------------------------------------------------------------~~~~~ 80 (210)
++...
T Consensus 168 ~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~ 247 (674)
T PRK01172 168 PDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRK 247 (674)
T ss_pred cCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHH
Confidence 11111
Q ss_pred hHHHHHHHHHhc-------------------------CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCC
Q psy6712 81 QVDWLTEKMREA-------------------------NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV 135 (210)
Q Consensus 81 ~~~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~ 135 (210)
+++.+++.|.+. ...+.++|++|+.++|..+.+.|++|.++|||||+.+++|+|+
T Consensus 248 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvni 327 (674)
T PRK01172 248 NAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNL 327 (674)
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCC
Confidence 144455444331 1247889999999999999999999999999999999999999
Q ss_pred CCCcEEEEecC---------CCChhHHHHhhhhhcCCCC--ceeEEEEeccCcHHHHHHHHHHhc
Q psy6712 136 QQVSLVINYDL---------PNNRELYIHRIGRSGRFGR--KGVAISFVKSDDIRILRDIEQYYS 189 (210)
Q Consensus 136 ~~~~~vi~~~~---------p~s~~~~~q~~GR~gR~g~--~g~~~~~~~~~~~~~~~~~~~~~~ 189 (210)
|+..+ |+.+. |.+..+|.||+|||||.|. .|.+++++.+.+. ....++++.
T Consensus 328 pa~~V-II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~~~~~~~l~ 389 (674)
T PRK01172 328 PARLV-IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YDAAKKYLS 389 (674)
T ss_pred cceEE-EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--HHHHHHHHc
Confidence 98654 44443 4688899999999999985 5778888765431 223455553
No 56
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.8e-23 Score=180.26 Aligned_cols=95 Identities=25% Similarity=0.356 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCC---CCCc-----EEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV---QQVS-----LVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~---~~~~-----~vi~~~~p~s~~~~ 153 (210)
++.+++.|.+.|+++..+||.++.+++..+..+++.| .|+|||++++||+|+ |++. +||++++|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 8889999999999999999999998888888887765 799999999999999 7998 99999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.||+||+||.|.+|.++.|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999987544
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=4.6e-23 Score=182.02 Aligned_cols=156 Identities=19% Similarity=0.360 Sum_probs=123.8
Q ss_pred cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH-HhccchH----HHHHH-------------------------
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE-MLNKGFK----EQIYD------------------------- 71 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~-l~~~~~~----~~~~~------------------------- 71 (210)
..+.+|+|+|||++.+.+.+ ...+++++++||||+|. +++.++. .++..
T Consensus 88 s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~ 166 (819)
T TIGR01970 88 SRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLP 166 (819)
T ss_pred CCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcC
Confidence 45679999999999998876 45789999999999995 4543221 11100
Q ss_pred ---------------------------------------------HHhhCCCchhHHHHHHHHHh---cCceEEEecCCC
Q psy6712 72 ---------------------------------------------VYRYLPPATQVDWLTEKMRE---ANFTVSSMHGDM 103 (210)
Q Consensus 72 ---------------------------------------------i~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~ 103 (210)
++.|++....++.+.+.|.+ .++.+..+||+|
T Consensus 167 ~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L 246 (819)
T TIGR01970 167 DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGEL 246 (819)
T ss_pred CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCC
Confidence 11122222226777777766 478999999999
Q ss_pred CHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC------------------ChhHHHHhhhhhcCCCC
Q psy6712 104 PQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN------------------NRELYIHRIGRSGRFGR 165 (210)
Q Consensus 104 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~------------------s~~~~~q~~GR~gR~g~ 165 (210)
+.++|..+++.|++|+.+|+|||+++++|+|+|++++||+++.|. |..+|.||+||+||. .
T Consensus 247 ~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~ 325 (819)
T TIGR01970 247 SLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-E 325 (819)
T ss_pred CHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-C
Confidence 999999999999999999999999999999999999999999874 345689999999999 8
Q ss_pred ceeEEEEeccCcHH
Q psy6712 166 KGVAISFVKSDDIR 179 (210)
Q Consensus 166 ~g~~~~~~~~~~~~ 179 (210)
.|.|+.+++..+..
T Consensus 326 ~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 326 PGVCYRLWSEEQHQ 339 (819)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999876543
No 58
>KOG0351|consensus
Probab=99.90 E-value=2.7e-23 Score=183.69 Aligned_cols=184 Identities=24% Similarity=0.349 Sum_probs=149.4
Q ss_pred CceEEEEEcCcchHHHH---HHhcC---CCcEEEEChHHHHHH--HHhcCccCCC---ccEEEechhhHHhccc--hHHH
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY---GQHVVSGTPGRVFDM--IRRRVLRTRN---IKMLVLDEADEMLNKG--FKEQ 68 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~---~~~Ili~Tp~~l~~~--l~~~~~~~~~---~~~lviDE~~~l~~~~--~~~~ 68 (210)
+|+..++.|+-...++. +.+.+ ..+|+.-||+++... +.+...++.. +..+||||||++.+|+ |++.
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 68888899998876544 44443 469999999987662 3333334555 8899999999999986 3433
Q ss_pred HHHHH---hhCCCchh----------------------------------------------------------------
Q psy6712 69 IYDVY---RYLPPATQ---------------------------------------------------------------- 81 (210)
Q Consensus 69 ~~~i~---~~~~~~~~---------------------------------------------------------------- 81 (210)
..++- ...+..+-
T Consensus 408 Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 408 YKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQS 487 (941)
T ss_pred HHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCC
Confidence 32222 11111110
Q ss_pred ----------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 82 ----------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 82 ----------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
++.++..|+..++.+..+|++|+..+|..+-.+|..++++|+|||-++++|+|.|+|..||||.+|.+..
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHH
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIE 185 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 185 (210)
.|.|.+|||||+|..+.|++|+...+...++.+-
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999988776655443
No 59
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=5.8e-22 Score=170.80 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCC-------CcEEEEecCCCChhHHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ-------VSLVINYDLPNNRELYI 154 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~-------~~~vi~~~~p~s~~~~~ 154 (210)
++.+++.|.+.|+++..+|+. ..+|+..+.+|..+...|+|||++++||+|++. .-+||+++.|.|...|.
T Consensus 418 se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~ 495 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDN 495 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHH
Confidence 889999999999999999999 789999999999999999999999999999998 44999999999999999
Q ss_pred HhhhhhcCCCCceeEEEEeccCcHHH
Q psy6712 155 HRIGRSGRFGRKGVAISFVKSDDIRI 180 (210)
Q Consensus 155 q~~GR~gR~g~~g~~~~~~~~~~~~~ 180 (210)
|++||+||+|.+|.+.+|++..|.-+
T Consensus 496 q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 496 QLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHhccccCCCCCcceEEEEeccHHHH
Confidence 99999999999999999999875443
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=3.8e-22 Score=172.81 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC---------CCcEEEEecCCCChhH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ---------QVSLVINYDLPNNREL 152 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~---------~~~~vi~~~~p~s~~~ 152 (210)
++.+++.|.+.|+++..+||.+...++..+..+++.| .|+|||++++||+|++ .+.+|+++++|....+
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid 514 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD 514 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH
Confidence 7889999999999999999999998888887777666 7999999999999999 8999999999988777
Q ss_pred HHHhhhhhcCCCCceeEEEEeccCcHH
Q psy6712 153 YIHRIGRSGRFGRKGVAISFVKSDDIR 179 (210)
Q Consensus 153 ~~q~~GR~gR~g~~g~~~~~~~~~~~~ 179 (210)
.||+||+||.|.+|.++.|++..|.-
T Consensus 515 -~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 515 -LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred -HHhhhcccCCCCceeEEEEEccchhh
Confidence 99999999999999999999876543
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.88 E-value=6.2e-22 Score=171.39 Aligned_cols=173 Identities=16% Similarity=0.279 Sum_probs=127.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc-----------------
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG----------------- 64 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~----------------- 64 (210)
|.++...+||.+. .+........+|+++|++.. ...+++++++|+||||++...+
T Consensus 253 g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ 324 (675)
T PHA02653 253 GSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSL 324 (675)
T ss_pred CceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccchhHHHHHHHHhhhhcCEE
Confidence 4568889999873 33333334779999997621 1257899999999999975332
Q ss_pred ------hHHHHHHH------------------------------------------------------------HhhCCC
Q psy6712 65 ------FKEQIYDV------------------------------------------------------------YRYLPP 78 (210)
Q Consensus 65 ------~~~~~~~i------------------------------------------------------------~~~~~~ 78 (210)
+.+++..+ +.|++.
T Consensus 325 ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 325 FLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred EEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECc
Confidence 00011111 112222
Q ss_pred chhHHHHHHHHHhc--CceEEEecCCCCHhHHHHHHHHH-hcCCCcEEEEecCccccCCCCCCcEEEEec---CCC----
Q psy6712 79 ATQVDWLTEKMREA--NFTVSSMHGDMPQKERDGIMKEF-RSGTSRVLITTDVWARGIDVQQVSLVINYD---LPN---- 148 (210)
Q Consensus 79 ~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~---~p~---- 148 (210)
...++.+.+.|.+. ++.+..+||+|++. ++++++| ++|+.+|||||+++++|+|+|++++||+++ .|.
T Consensus 405 ~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 405 VSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 22267777777766 68999999999975 5667787 689999999999999999999999999998 554
Q ss_pred -----ChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHH
Q psy6712 149 -----NRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIE 185 (210)
Q Consensus 149 -----s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 185 (210)
|.++|.||+|||||. ++|.|+.+++..+...+.++.
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 888999999999999 889999999887655444444
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.88 E-value=3.9e-22 Score=176.39 Aligned_cols=169 Identities=16% Similarity=0.319 Sum_probs=128.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHH-hccc----hHHHH-------
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM-LNKG----FKEQI------- 69 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l-~~~~----~~~~~------- 69 (210)
|..|...++|.+.. ..+.+|+|+|||++.+++.+ ...+++++++||||+|.. ++.. +..++
T Consensus 77 g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~ 149 (812)
T PRK11664 77 GETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDD 149 (812)
T ss_pred CceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCcc
Confidence 34555555554421 23557999999999998875 457899999999999972 2211 10000
Q ss_pred ---------------H------------------------------------------------HHHhhCCCchhHHHHH
Q psy6712 70 ---------------Y------------------------------------------------DVYRYLPPATQVDWLT 86 (210)
Q Consensus 70 ---------------~------------------------------------------------~i~~~~~~~~~~~~l~ 86 (210)
. .++.|++....++.+.
T Consensus 150 lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 150 LKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred ceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHH
Confidence 0 0111223333377778
Q ss_pred HHHHh---cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC---------------
Q psy6712 87 EKMRE---ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN--------------- 148 (210)
Q Consensus 87 ~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~--------------- 148 (210)
+.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|+|||+++++|+|+|++++||+++.+.
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 88876 578899999999999999999999999999999999999999999999999987664
Q ss_pred ---ChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 149 ---NRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 149 ---s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
|..+|.||.||+||. ..|.|+-+++..+.
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 69999999987543
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.88 E-value=1.4e-21 Score=166.06 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe-cCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT-DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
++.+++.|.+.+.++..+||+|+.++|..+++.|++|+..+|||| +.+++|+|+|++++||+++++.|...|+||+||+
T Consensus 357 ~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 357 GKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcc
Confidence 677788888889999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred cCCCCce
Q psy6712 161 GRFGRKG 167 (210)
Q Consensus 161 gR~g~~g 167 (210)
+|.+..+
T Consensus 437 ~R~~~~K 443 (501)
T PHA02558 437 LRKHGSK 443 (501)
T ss_pred ccCCCCC
Confidence 9997643
No 64
>PRK13766 Hef nuclease; Provisional
Probab=99.87 E-value=8.8e-21 Score=169.24 Aligned_cols=94 Identities=29% Similarity=0.484 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCceEEEecCC--------CCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGD--------MPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~ 153 (210)
++.+.+.|...++++..+||. |++.+|..++++|++|+.++||+|+++++|+|+|++++||+||+|++...|
T Consensus 378 ~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 378 AEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 566667776778888888886 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccC
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSD 176 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~ 176 (210)
+||+||+||.|. |.++.++...
T Consensus 458 iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 458 IQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred HHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999865 7777777653
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.9e-20 Score=160.43 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC---CCc-----EEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ---QVS-----LVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~---~~~-----~vi~~~~p~s~~~~ 153 (210)
++.+++.|.+.|+++..+||.++. ++..+..|..++..|+|||++++||+|++ ++. +||+++.|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 888999999999999999999754 44555566666678999999999999999 665 99999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.||+||+||.|..|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999997553
No 66
>KOG0352|consensus
Probab=99.86 E-value=7.2e-21 Score=152.28 Aligned_cols=103 Identities=20% Similarity=0.344 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
++.++=.|...|+++..+|+++...+|.++-++|.++++.|+++|..+++|+|-|++.+||++++|.+...|.|..||||
T Consensus 268 cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAG 347 (641)
T KOG0352|consen 268 CEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAG 347 (641)
T ss_pred HHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccc
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeccCcHHHHHHH
Q psy6712 162 RFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 162 R~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
|+|..+.|-++++..|...+..+
T Consensus 348 RDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 348 RDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred cCCCccceeeeecccchHHHHHH
Confidence 99999999999998777665543
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.85 E-value=5.9e-21 Score=177.58 Aligned_cols=169 Identities=15% Similarity=0.224 Sum_probs=131.8
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhcc-----------chH
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNK-----------GFK 66 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~-----------~~~ 66 (210)
+++++.++||.+.+++. ..+.+ .++|||+||+++.+.+... .. .+++++|+||||+|+++ +|.
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~-~~i~~iVVDEAD~ml~~~knid~~L~llGF~ 229 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KH-LKFDFIFVDDVDAFLKASKNIDRSLQLLGFY 229 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hh-CCCCEEEEECceeccccccccchhhhcCCCh
Confidence 57788999999987764 44555 4899999999998876542 22 78999999999999863 666
Q ss_pred HHHHH----HHh----------------------hCCCchh---------------------------------------
Q psy6712 67 EQIYD----VYR----------------------YLPPATQ--------------------------------------- 81 (210)
Q Consensus 67 ~~~~~----i~~----------------------~~~~~~~--------------------------------------- 81 (210)
+++.. ++. .++...+
T Consensus 230 ~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~ 309 (1638)
T PRK14701 230 EEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVD 309 (1638)
T ss_pred HHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEE
Confidence 66643 221 1111111
Q ss_pred ------------------------------------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEE
Q psy6712 82 ------------------------------------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLIT 125 (210)
Q Consensus 82 ------------------------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 125 (210)
++.+++.|.+.|+++..+|++ |...+++|++|+++||||
T Consensus 310 ~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVa 384 (1638)
T PRK14701 310 VYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIG 384 (1638)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEE
Confidence 478999999999999999995 889999999999999999
Q ss_pred e----cCccccCCCCC-CcEEEEecCCC---ChhHHHHhh-------------hhhcCCCCceeEEEEeccCc
Q psy6712 126 T----DVWARGIDVQQ-VSLVINYDLPN---NRELYIHRI-------------GRSGRFGRKGVAISFVKSDD 177 (210)
Q Consensus 126 T----~~~~~g~d~~~-~~~vi~~~~p~---s~~~~~q~~-------------GR~gR~g~~g~~~~~~~~~~ 177 (210)
| +.++||+|+|+ +.+||+||+|. +...|.|.. ||+||.|..+.+.......+
T Consensus 385 T~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 385 VATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred ecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 9 48899999998 99999999999 777666655 99999988766654443333
No 68
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.85 E-value=3.6e-21 Score=123.63 Aligned_cols=78 Identities=50% Similarity=0.803 Sum_probs=75.6
Q ss_pred HHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 87 EKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
+.|++.++++..+||+|+..+|..+++.|+.++..+||||+++++|+|+|++++||++++|++...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.85 E-value=3.3e-21 Score=168.96 Aligned_cols=172 Identities=21% Similarity=0.331 Sum_probs=129.6
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCc-
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA- 79 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~- 79 (210)
+|++|...+|+.+... .-..+++|||+||+++..++++......+++++|+||+|.+.+....+.++.++......
T Consensus 102 ~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~ 178 (766)
T COG1204 102 LGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN 178 (766)
T ss_pred cCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC
Confidence 5899999999999764 223478999999999998888877677899999999999888763333333333221111
Q ss_pred --hh----------------------------------------------------------------------------
Q psy6712 80 --TQ---------------------------------------------------------------------------- 81 (210)
Q Consensus 80 --~~---------------------------------------------------------------------------- 81 (210)
.+
T Consensus 179 ~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLv 258 (766)
T COG1204 179 ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLV 258 (766)
T ss_pred cceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEE
Confidence 01
Q ss_pred -------HHHHHHHHHh-------------------------------------cCceEEEecCCCCHhHHHHHHHHHhc
Q psy6712 82 -------VDWLTEKMRE-------------------------------------ANFTVSSMHGDMPQKERDGIMKEFRS 117 (210)
Q Consensus 82 -------~~~l~~~l~~-------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~ 117 (210)
+...++.++. --..+.++|++++.++|..+.+.|+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 1111121110 02368899999999999999999999
Q ss_pred CCCcEEEEecCccccCCCCCCcEEE----Eec-----CCCChhHHHHhhhhhcCCCC--ceeEEEEecc
Q psy6712 118 GTSRVLITTDVWARGIDVQQVSLVI----NYD-----LPNNRELYIHRIGRSGRFGR--KGVAISFVKS 175 (210)
Q Consensus 118 g~~~ilv~T~~~~~g~d~~~~~~vi----~~~-----~p~s~~~~~q~~GR~gR~g~--~g~~~~~~~~ 175 (210)
|+++||+||..+++|+|+|.-..|| .|+ .+.++.+++||+|||||.|- .|.++++..+
T Consensus 339 g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 339 GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 9999999999999999999877776 466 56789999999999999986 4667766633
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=4.3e-20 Score=155.94 Aligned_cols=175 Identities=21% Similarity=0.348 Sum_probs=133.6
Q ss_pred CCceEEEEEcCcchHH---HHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc--------cch-H-
Q psy6712 1 MNVQCHACIGGTNLSE---DLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN--------KGF-K- 66 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~---~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~--------~~~-~- 66 (210)
+||+|+.++|.....+ ....+.+| .||+||| +. |-...+.++++.++|+||-|+..- .+. .
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT----HA-LiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~P 412 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT----HA-LIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNP 412 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc----ch-hhhcceeecceeEEEEeccccccHHHHHHHHHhCCCCC
Confidence 5899999999877444 34555565 8999999 33 444557789999999999998741 121 0
Q ss_pred --------------------HHHHHHHhhCCCchh---------------------------------------------
Q psy6712 67 --------------------EQIYDVYRYLPPATQ--------------------------------------------- 81 (210)
Q Consensus 67 --------------------~~~~~i~~~~~~~~~--------------------------------------------- 81 (210)
+-=-.++..+|+.++
T Consensus 413 h~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~ 492 (677)
T COG1200 413 HVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQ 492 (677)
T ss_pred cEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhh
Confidence 000122222332222
Q ss_pred -HHHHHHHHHhc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHHhh
Q psy6712 82 -VDWLTEKMREA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRI 157 (210)
Q Consensus 82 -~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q~~ 157 (210)
+..+++.|+.. +.++..+||.|+.+++.+++++|++|+++|||||+.++-|+|+|+++++|..++.+ ..++.=|..
T Consensus 493 ~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 493 AAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred hHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhc
Confidence 55666666532 56799999999999999999999999999999999999999999999999999775 567777888
Q ss_pred hhhcCCCCceeEEEEeccCcHHH
Q psy6712 158 GRSGRFGRKGVAISFVKSDDIRI 180 (210)
Q Consensus 158 GR~gR~g~~g~~~~~~~~~~~~~ 180 (210)
||+||.+..+.|++++.+...+.
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~~~~ 595 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPLSEV 595 (677)
T ss_pred cccCCCCcceEEEEEeCCCCChh
Confidence 99999999999999999876333
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.85 E-value=2.8e-20 Score=169.65 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=123.4
Q ss_pred CceEEEEEcCcc-----hHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-----------cc
Q psy6712 2 NVQCHACIGGTN-----LSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-----------KG 64 (210)
Q Consensus 2 ~i~~~~~~gg~~-----~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-----------~~ 64 (210)
++.+..++||.+ .+++...+.+ ++||+|+||++|.+++. .+..+.++++|+||||+|++ .|
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 566777887764 2334455554 58999999999999876 45667799999999999986 45
Q ss_pred hH-HHHHHHHhhCCC------------------------chh--------------------------------------
Q psy6712 65 FK-EQIYDVYRYLPP------------------------ATQ-------------------------------------- 81 (210)
Q Consensus 65 ~~-~~~~~i~~~~~~------------------------~~~-------------------------------------- 81 (210)
|. +++..++..++. ..|
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceE
Confidence 63 556666555442 122
Q ss_pred -----------------------------------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEE-
Q psy6712 82 -----------------------------------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLIT- 125 (210)
Q Consensus 82 -----------------------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~- 125 (210)
++.+++.|+..|+++..+||+| ...+++|++|++++|||
T Consensus 309 ~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVat 383 (1176)
T PRK09401 309 SYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGV 383 (1176)
T ss_pred EEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEe
Confidence 7889999999999999999999 23459999999999999
Q ss_pred ---ecCccccCCCCC-CcEEEEecCCC------ChhHHHHhhhhhcC
Q psy6712 126 ---TDVWARGIDVQQ-VSLVINYDLPN------NRELYIHRIGRSGR 162 (210)
Q Consensus 126 ---T~~~~~g~d~~~-~~~vi~~~~p~------s~~~~~q~~GR~gR 162 (210)
|+.++||+|+|+ +.+|||||+|. ....|.+|.||+..
T Consensus 384 as~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 384 ASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred cCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 689999999999 89999999998 67889999999853
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=160.80 Aligned_cols=177 Identities=18% Similarity=0.299 Sum_probs=138.4
Q ss_pred CCceEEEEEcCcchHHHHH----HhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHH---HH
Q psy6712 1 MNVQCHACIGGTNLSEDLR----KLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYD---VY 73 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~----~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~---i~ 73 (210)
+|++++.-.|-...+.... ......||||||-+-+..+++.+ -++.++..+||||+|.+-+......++- -+
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHH
Confidence 5677877777766554321 12236799999999988888887 5789999999999998876332222211 12
Q ss_pred hhCCCchh------------------------------------------------------------------------
Q psy6712 74 RYLPPATQ------------------------------------------------------------------------ 81 (210)
Q Consensus 74 ~~~~~~~~------------------------------------------------------------------------ 81 (210)
.++-+..|
T Consensus 367 r~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVF 446 (830)
T COG1202 367 RYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVF 446 (830)
T ss_pred HHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEE
Confidence 22222222
Q ss_pred ------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE---EecC-CCChh
Q psy6712 82 ------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI---NYDL-PNNRE 151 (210)
Q Consensus 82 ------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi---~~~~-p~s~~ 151 (210)
+..++..|..+|+++.++|++|+..+|+.+..+|..+++.++|+|.+++.|+|+|..++|+ -++. +-|+.
T Consensus 447 T~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~ 526 (830)
T COG1202 447 TYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVR 526 (830)
T ss_pred ecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHH
Confidence 8999999999999999999999999999999999999999999999999999999877664 2333 45899
Q ss_pred HHHHhhhhhcCCCC--ceeEEEEeccCcH
Q psy6712 152 LYIHRIGRSGRFGR--KGVAISFVKSDDI 178 (210)
Q Consensus 152 ~~~q~~GR~gR~g~--~g~~~~~~~~~~~ 178 (210)
.|.||+|||||.+- .|++++++.+...
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCChh
Confidence 99999999999975 6999999987543
No 73
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.84 E-value=2e-20 Score=169.36 Aligned_cols=153 Identities=20% Similarity=0.356 Sum_probs=119.7
Q ss_pred cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH-HhccchHHH-HHH----------------------------
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE-MLNKGFKEQ-IYD---------------------------- 71 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~-l~~~~~~~~-~~~---------------------------- 71 (210)
.++++|+++|||+|++.+..... +++++++||||||. +++.++... +..
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~fs~~F~~ 239 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFNN 239 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHHHHHHcCC
Confidence 45789999999999999886544 89999999999994 555443211 111
Q ss_pred -------------------------------------------------HHhhCCCchhHHHHHHHHHhcCc---eEEEe
Q psy6712 72 -------------------------------------------------VYRYLPPATQVDWLTEKMREANF---TVSSM 99 (210)
Q Consensus 72 -------------------------------------------------i~~~~~~~~~~~~l~~~l~~~~~---~~~~~ 99 (210)
++.|++....++.+++.|.+.++ .+..+
T Consensus 240 apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpL 319 (1294)
T PRK11131 240 APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPL 319 (1294)
T ss_pred CCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeec
Confidence 11123333336777788877665 47789
Q ss_pred cCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec---------------CC---CChhHHHHhhhhhc
Q psy6712 100 HGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD---------------LP---NNRELYIHRIGRSG 161 (210)
Q Consensus 100 ~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~---------------~p---~s~~~~~q~~GR~g 161 (210)
||+|+.++|..+++. .|..+|+|||+++++|+|+|++++||+++ +| .|..+|.||.||+|
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 397 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccC
Confidence 999999999999886 47889999999999999999999999986 23 45689999999999
Q ss_pred CCCCceeEEEEeccCcH
Q psy6712 162 RFGRKGVAISFVKSDDI 178 (210)
Q Consensus 162 R~g~~g~~~~~~~~~~~ 178 (210)
|. .+|.|+.++++.+.
T Consensus 398 R~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 398 RV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CC-CCcEEEEeCCHHHH
Confidence 99 78999999987554
No 74
>KOG0354|consensus
Probab=99.84 E-value=6.3e-20 Score=156.91 Aligned_cols=95 Identities=28% Similarity=0.462 Sum_probs=79.4
Q ss_pred HHHHHHHHH---hcCceEEEec--------CCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 82 VDWLTEKMR---EANFTVSSMH--------GDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 82 ~~~l~~~l~---~~~~~~~~~~--------~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
+..+..+|. ..+++...+- .+|++.++++++++|+.|++.+||||+++++|+|++.|+.||.||...++
T Consensus 426 a~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 426 ALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNP 505 (746)
T ss_pred HHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccH
Confidence 555666654 2334444433 37999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
...+||.|| ||. +.|.++++++..+.
T Consensus 506 IrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 506 IRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred HHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 999999999 897 67888888875433
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=8.2e-21 Score=155.53 Aligned_cols=92 Identities=21% Similarity=0.379 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCc--eEEEecCCCCHhHHHH----HHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHH
Q psy6712 82 VDWLTEKMREANF--TVSSMHGDMPQKERDG----IMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 155 (210)
Q Consensus 82 ~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q 155 (210)
++.+++.|++.+. .+..+||+|++.+|.+ +++.|++|+.++||||+++++|+|++ ++++|++..| ..+|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 7778888877665 5999999999999976 48899999999999999999999995 7888888665 789999
Q ss_pred hhhhhcCCCCc----eeEEEEeccC
Q psy6712 156 RIGRSGRFGRK----GVAISFVKSD 176 (210)
Q Consensus 156 ~~GR~gR~g~~----g~~~~~~~~~ 176 (210)
|+||+||.|+. |.++++....
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 99999999763 3677776643
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.83 E-value=1.6e-19 Score=157.96 Aligned_cols=123 Identities=21% Similarity=0.344 Sum_probs=98.8
Q ss_pred HHHHHHHHHhc--CceEEEecCCCC--HhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC--CC------
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMP--QKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP--NN------ 149 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p--~s------ 149 (210)
++.+.+.|++. +.++..+|++++ ..++++++++|++|+.+|||+|+++++|+|+|++++|+..|.+ .+
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra 518 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA 518 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch
Confidence 67788888775 778999999986 4678999999999999999999999999999999999665543 22
Q ss_pred ----hhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHH-----HHhcCccccccCCccccCCCCCCCC
Q psy6712 150 ----RELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIE-----QYYSTQIDEMPMNGKRSLHSYPARY 210 (210)
Q Consensus 150 ----~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
...|.|++||+||.+..|.+++.....+...++.+. .++..++++ +...+||||.
T Consensus 519 ~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~------R~~~~~PPf~ 582 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEE------RRAAGYPPFG 582 (679)
T ss_pred HHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHH------HHhcCCCCHH
Confidence 367999999999999999999988877766655553 355555555 5566899973
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=2.2e-19 Score=152.21 Aligned_cols=123 Identities=21% Similarity=0.396 Sum_probs=97.6
Q ss_pred HHHHHHHHHhc--CceEEEecCCCCHhHH--HHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC---------
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMPQKER--DGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN--------- 148 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~--------- 148 (210)
.+.+.+.|++. +.++..+|++++..++ ++++++|++|+.+|||+|+++++|+|+|++++|+..|.+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 67778888775 7789999999987665 8999999999999999999999999999999986544331
Q ss_pred ---ChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHH-----HHHHHhcCccccccCCccccCCCCCCCC
Q psy6712 149 ---NRELYIHRIGRSGRFGRKGVAISFVKSDDIRILR-----DIEQYYSTQIDEMPMNGKRSLHSYPARY 210 (210)
Q Consensus 149 ---s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
....|.|++||+||.+..|.+++.....+...++ ..+.++..++++ +...+||||.
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~------R~~~~~PPf~ 414 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQ------RRALNYPPFT 414 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHH------HHHcCCCchh
Confidence 2467899999999998999999777665554443 344566666666 6667899973
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=3.8e-19 Score=161.61 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=125.5
Q ss_pred CceEEEEEcC-cchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH-HhccchHHH-HH--------
Q psy6712 2 NVQCHACIGG-TNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE-MLNKGFKEQ-IY-------- 70 (210)
Q Consensus 2 ~i~~~~~~gg-~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~-l~~~~~~~~-~~-------- 70 (210)
|.++...+|. ...+.+ ...+..|.++|||.|+..+.... .++.++++||||+|. .++.++... +.
T Consensus 136 g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpd 211 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPD 211 (1283)
T ss_pred CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCC
Confidence 4455555554 333322 23467899999999999887654 478999999999995 544332211 11
Q ss_pred ---------------------------------------------------------------------HHHhhCCCchh
Q psy6712 71 ---------------------------------------------------------------------DVYRYLPPATQ 81 (210)
Q Consensus 71 ---------------------------------------------------------------------~i~~~~~~~~~ 81 (210)
.++.|++....
T Consensus 212 LKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 212 LKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred CeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 12234444444
Q ss_pred HHHHHHHHHhcC---ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC-----------
Q psy6712 82 VDWLTEKMREAN---FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP----------- 147 (210)
Q Consensus 82 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p----------- 147 (210)
++.+++.|.+.+ ..+..+||+|+.++|..+++.+ +..+|+|||++++.|+|+|++.+||+++.+
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 777888887653 5688999999999999886654 246899999999999999999999998843
Q ss_pred -------CChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 148 -------NNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 148 -------~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
-|..+|.||.||+||.+ +|.|+.+++..+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999996 9999999987544
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.79 E-value=3.2e-18 Score=151.89 Aligned_cols=169 Identities=21% Similarity=0.335 Sum_probs=127.2
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhh--
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY-- 75 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~-- 75 (210)
.|+|..+.-=.+.++|. +.+++ ..|||||| +-|.++.+.++++.++||||=|+..=. ..+.++++...
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFGVk-~KEkLK~Lr~~VD 744 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFGVK-HKEKLKELRANVD 744 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcCcc-HHHHHHHHhccCc
Confidence 45566655555555555 44445 47999999 445667889999999999999987522 22222222211
Q ss_pred ---------------------------CCC-chh-------------------------------------HHHHHHHHH
Q psy6712 76 ---------------------------LPP-ATQ-------------------------------------VDWLTEKMR 90 (210)
Q Consensus 76 ---------------------------~~~-~~~-------------------------------------~~~l~~~l~ 90 (210)
+|+ .+. .+.+.+.|+
T Consensus 745 vLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~ 824 (1139)
T COG1197 745 VLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLR 824 (1139)
T ss_pred EEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHH
Confidence 010 000 444555554
Q ss_pred hc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHHhhhhhcCCCCce
Q psy6712 91 EA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q~~GR~gR~g~~g 167 (210)
+. ..++.+.||.|+..+-++++.+|.+|+++|||||++++.|+|+|++|.+|..+... ..++..|..||+||.++.+
T Consensus 825 ~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~A 904 (1139)
T COG1197 825 ELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQA 904 (1139)
T ss_pred HhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceE
Confidence 43 45799999999999999999999999999999999999999999999999887764 6899999999999999999
Q ss_pred eEEEEeccC
Q psy6712 168 VAISFVKSD 176 (210)
Q Consensus 168 ~~~~~~~~~ 176 (210)
.|++++.+.
T Consensus 905 YAYfl~p~~ 913 (1139)
T COG1197 905 YAYFLYPPQ 913 (1139)
T ss_pred EEEEeecCc
Confidence 999999863
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.78 E-value=1.1e-18 Score=155.66 Aligned_cols=123 Identities=22% Similarity=0.302 Sum_probs=105.6
Q ss_pred hCCCchhHHHHHHHH-HhcCceEEEecCCCCHhHHHHHHHHHhcC--CCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 75 YLPPATQVDWLTEKM-REANFTVSSMHGDMPQKERDGIMKEFRSG--TSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 75 ~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
|+.....+..+.+.| ...|+++..+||+|+..+|.++++.|+++ ...+||||+++++|+|++.+++||+||+|+++.
T Consensus 499 F~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~ 578 (956)
T PRK04914 499 ICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPD 578 (956)
T ss_pred EeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHH
Confidence 444445589999999 45699999999999999999999999974 589999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccC
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPM 197 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
.|.||+||++|.|+.+.+.+++...+....+.+.+++...+.-+..
T Consensus 579 ~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~ 624 (956)
T PRK04914 579 LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEH 624 (956)
T ss_pred HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceec
Confidence 9999999999999999888888766655677777777775544433
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=1.1e-17 Score=152.91 Aligned_cols=135 Identities=19% Similarity=0.349 Sum_probs=105.1
Q ss_pred EEEcCcchHHH---HHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-----------cchHHH-HH
Q psy6712 7 ACIGGTNLSED---LRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-----------KGFKEQ-IY 70 (210)
Q Consensus 7 ~~~gg~~~~~~---~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-----------~~~~~~-~~ 70 (210)
.++||.+..++ +..+.+ +++|||+||++|.+.+.. +.. +++++|+||||.|++ .||.++ +.
T Consensus 157 ~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~ 233 (1171)
T TIGR01054 157 AYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIE 233 (1171)
T ss_pred eecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHH
Confidence 57899887665 344554 599999999999987765 222 899999999999997 356543 33
Q ss_pred HHHh----------------------hCCCchh-----------------------------------------------
Q psy6712 71 DVYR----------------------YLPPATQ----------------------------------------------- 81 (210)
Q Consensus 71 ~i~~----------------------~~~~~~~----------------------------------------------- 81 (210)
.++. .++...+
T Consensus 234 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 234 KAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED 313 (1171)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc
Confidence 3221 1111100
Q ss_pred ----------------------------HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe----cCc
Q psy6712 82 ----------------------------VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT----DVW 129 (210)
Q Consensus 82 ----------------------------~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T----~~~ 129 (210)
++.+++.|.+.|+++..+||+|+ +.++++|++|++++|||| +.+
T Consensus 314 ~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~ 389 (1171)
T TIGR01054 314 LKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTL 389 (1171)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcc
Confidence 77888899889999999999997 368999999999999995 899
Q ss_pred cccCCCCC-CcEEEEecCCC
Q psy6712 130 ARGIDVQQ-VSLVINYDLPN 148 (210)
Q Consensus 130 ~~g~d~~~-~~~vi~~~~p~ 148 (210)
+||+|+|+ +++||+||+|.
T Consensus 390 aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 390 VRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCCCCccccEEEEECCCC
Confidence 99999999 89999999994
No 82
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.76 E-value=5e-18 Score=109.54 Aligned_cols=81 Identities=46% Similarity=0.788 Sum_probs=77.4
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.+.+.|+..++.+..+||+|+..+|...++.|+.++..++++|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy6712 164 G 164 (210)
Q Consensus 164 g 164 (210)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=4.1e-17 Score=141.65 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=79.8
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcC-CCcEEEEecCccccCCCCCCcEEEEecCC-CChhHHHHhhhhhcCCCCcee----
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSG-TSRVLITTDVWARGIDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGRKGV---- 168 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~g~d~~~~~~vi~~~~p-~s~~~~~q~~GR~gR~g~~g~---- 168 (210)
.+..+||+++..+|..++++|+.+ ++++||+|+++.+|+|+|+++++|+++.| .|...|+||+||++|.+..|.
T Consensus 517 ~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~ 596 (732)
T TIGR00603 517 GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEY 596 (732)
T ss_pred CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccc
Confidence 356689999999999999999865 88999999999999999999999999987 599999999999999976544
Q ss_pred ---EEEEeccC--cHHHHHHHHHHhc
Q psy6712 169 ---AISFVKSD--DIRILRDIEQYYS 189 (210)
Q Consensus 169 ---~~~~~~~~--~~~~~~~~~~~~~ 189 (210)
.+.+++.+ |+....+..+++.
T Consensus 597 ~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 597 NAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred cceEEEEecCCchHHHHHHHHHHHHH
Confidence 37788765 4455555566654
No 84
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=6.3e-17 Score=141.56 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------------------- 138 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------------------- 138 (210)
++.+++.|.+.++++..+|+. ..+|+..+.+|+.+...|+|||++++||+|++--
T Consensus 443 se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~ 520 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIK 520 (830)
T ss_pred HHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHH
Confidence 888999999999999999996 7889999999999999999999999999998643
Q ss_pred -------c--------EEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 139 -------S--------LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 139 -------~--------~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
+ +||-...|.|..---|..||+||+|.+|.+-.|++-+|.
T Consensus 521 ~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 521 AEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1 788888899988889999999999999999999987654
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=6.3e-17 Score=141.91 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------------------- 138 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------------------- 138 (210)
++.+++.|.+.|+++..+|+.+...++..+.++|+.| .|+|||++++||+|+-=-
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 8899999999999999999999999999999999999 499999999999998411
Q ss_pred ----------c-----EEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 139 ----------S-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 139 ----------~-----~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
. +||-...+.|..-=-|..||+||+|.+|.+-.|++-+|.
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 0 677777788888778999999999999999999986654
No 86
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=8.7e-18 Score=118.00 Aligned_cols=102 Identities=47% Similarity=0.789 Sum_probs=92.6
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
.++.+++....++.+.+.|.+.+.++..+||+++..+|..+.+.|+++...++++|..+++|+|+|.+++||++++|++.
T Consensus 30 ~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~ 109 (131)
T cd00079 30 KVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSP 109 (131)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCH
Confidence 34555566666888889998888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEE
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISF 172 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~ 172 (210)
..+.|++||++|.|+.|.++++
T Consensus 110 ~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 110 SSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHheecccccccCCCCceEEeC
Confidence 9999999999999988877653
No 87
>KOG0353|consensus
Probab=99.74 E-value=1.6e-17 Score=131.70 Aligned_cols=182 Identities=18% Similarity=0.333 Sum_probs=140.2
Q ss_pred CCceEEEEEcCcchHHHH---HHhcC---CCcEEEEChHHHHHH---HHh--cCccCCCccEEEechhhHHhccc--hHH
Q psy6712 1 MNVQCHACIGGTNLSEDL---RKLDY---GQHVVSGTPGRVFDM---IRR--RVLRTRNIKMLVLDEADEMLNKG--FKE 67 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~---~~l~~---~~~Ili~Tp~~l~~~---l~~--~~~~~~~~~~lviDE~~~l~~~~--~~~ 67 (210)
+||....++...+.++.. ..+.+ ....|..||+++... +.. +.+....++.+.+||+|+..+|| |++
T Consensus 157 lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 157 LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCc
Confidence 466666677666654432 22222 457999999987652 221 34556778899999999999886 222
Q ss_pred HHHHH--Hh-hCCCc-----------------------------------------------------------------
Q psy6712 68 QIYDV--YR-YLPPA----------------------------------------------------------------- 79 (210)
Q Consensus 68 ~~~~i--~~-~~~~~----------------------------------------------------------------- 79 (210)
+...+ +. .++..
T Consensus 237 dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~ 316 (695)
T KOG0353|consen 237 DYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFA 316 (695)
T ss_pred chHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccC
Confidence 21111 10 00000
Q ss_pred -----------hhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC
Q psy6712 80 -----------TQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN 148 (210)
Q Consensus 80 -----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~ 148 (210)
..++.++..|+..|+.+..+|..|.++++..+-+.|..|++.++|+|-++++|+|-|++.+||+..+|.
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 008999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHH-------------------------------------------hhhhhcCCCCceeEEEEeccCcHHHHH
Q psy6712 149 NRELYIH-------------------------------------------RIGRSGRFGRKGVAISFVKSDDIRILR 182 (210)
Q Consensus 149 s~~~~~q-------------------------------------------~~GR~gR~g~~g~~~~~~~~~~~~~~~ 182 (210)
|...|.| ..||+||.+....|++++.-.+.....
T Consensus 397 sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 397 SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH
Confidence 9999999 679999999999999999766554443
No 88
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.73 E-value=1e-17 Score=145.51 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=102.0
Q ss_pred HhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec-----CC
Q psy6712 73 YRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD-----LP 147 (210)
Q Consensus 73 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~-----~p 147 (210)
+.+++....++.+.+.|.+.|+++..+|++++..+|.++++.|+.|+++++|||+.+++|+|+|++++|+++| .|
T Consensus 446 LIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p 525 (655)
T TIGR00631 446 LVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFL 525 (655)
T ss_pred EEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCC
Confidence 4466677779999999999999999999999999999999999999999999999999999999999999988 79
Q ss_pred CChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHH
Q psy6712 148 NNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQY 187 (210)
Q Consensus 148 ~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 187 (210)
.+..+|+||+||+||. ..|.+++++...+..+.+.+++.
T Consensus 526 ~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 526 RSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999998 68999999998665555544443
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=146.21 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=140.1
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc----CccCCCccEEEechhhHHhc---cchHHHH---HH
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR----VLRTRNIKMLVLDEADEMLN---KGFKEQI---YD 71 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~----~~~~~~~~~lviDE~~~l~~---~~~~~~~---~~ 71 (210)
++.+..+.|+++..+......+.+|||+++|++|..++.+. ...++++++||+||+|.--. ....--+ ..
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~ 224 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLR 224 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHH
Confidence 37788899999988777778889999999999999966653 23567899999999997532 1222222 22
Q ss_pred HHhhCCCchh----------------------------------------------------------------------
Q psy6712 72 VYRYLPPATQ---------------------------------------------------------------------- 81 (210)
Q Consensus 72 i~~~~~~~~~---------------------------------------------------------------------- 81 (210)
++...+...|
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~ 304 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVR 304 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHH
Confidence 2222222222
Q ss_pred --------------HHHHH----HHHHhcC----ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCc
Q psy6712 82 --------------VDWLT----EKMREAN----FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS 139 (210)
Q Consensus 82 --------------~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~ 139 (210)
++.+. +.+...+ ..+..++++|..++|.++...|+.|+...+++|++++-|+|+.+++
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 23332 2222223 5688899999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-ChhHHHHhhhhhcCCCCceeEEEEeccC--cHHHHHHHHHHhc
Q psy6712 140 LVINYDLPN-NRELYIHRIGRSGRFGRKGVAISFVKSD--DIRILRDIEQYYS 189 (210)
Q Consensus 140 ~vi~~~~p~-s~~~~~q~~GR~gR~g~~g~~~~~~~~~--~~~~~~~~~~~~~ 189 (210)
.||.+..|. +..++.||+||+||.++.+..+...... +.......+..+.
T Consensus 385 avi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 385 AVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999 9999999999999999777766666532 4444444444444
No 90
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.73 E-value=1.1e-17 Score=145.83 Aligned_cols=128 Identities=27% Similarity=0.381 Sum_probs=113.1
Q ss_pred HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC-----
Q psy6712 72 VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL----- 146 (210)
Q Consensus 72 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~----- 146 (210)
++.++....+++.+++.|.+.|+++..+||+++..+|.++++.|+.|++.++|||+.+++|+|+|++++||++|.
T Consensus 449 viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~ 528 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF 528 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc
Confidence 344666777799999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCChhHHHHhhhhhcCCCCceeEEEEecc---------CcHHHHHHHHHHhcCccccccCCcc
Q psy6712 147 PNNRELYIHRIGRSGRFGRKGVAISFVKS---------DDIRILRDIEQYYSTQIDEMPMNGK 200 (210)
Q Consensus 147 p~s~~~~~q~~GR~gR~g~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (210)
|.+...|+||+||+||. ..|.+++|+.. .+....++++..++.....+|.+..
T Consensus 529 ~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 529 LRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred CCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHH
Confidence 78999999999999996 78999999984 4566677778888888877776653
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.2e-16 Score=139.39 Aligned_cols=95 Identities=27% Similarity=0.371 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC---CCc-----EEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ---QVS-----LVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~---~~~-----~vi~~~~p~s~~~~ 153 (210)
++.+++.|.+.++++..+|+++...++..+..+++.|. |+|||++++||.|++ ++. +||+++.|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 88899999999999999999999888888888887765 999999999999994 888 99999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.|+.||+||+|.+|.+..+++.+|.
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999987653
No 92
>KOG0952|consensus
Probab=99.69 E-value=1.4e-16 Score=139.20 Aligned_cols=88 Identities=25% Similarity=0.374 Sum_probs=71.6
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE----EecCC------CChhHHHHhhhhhcCCC
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI----NYDLP------NNRELYIHRIGRSGRFG 164 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi----~~~~p------~s~~~~~q~~GR~gR~g 164 (210)
.....|++|..++|..+.+.|..|-+++|+||..+++|+|+|+--.+| .||.. .+.-+.+|.+|||||..
T Consensus 398 g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 398 GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 567899999999999999999999999999999999999999855555 24433 35778899999999973
Q ss_pred --CceeEEEEeccCcHHHHH
Q psy6712 165 --RKGVAISFVKSDDIRILR 182 (210)
Q Consensus 165 --~~g~~~~~~~~~~~~~~~ 182 (210)
..|.++++.+.+..+.+.
T Consensus 478 Fd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 478 FDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred CCCCceEEEEecccHHHHHH
Confidence 468888887765544443
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.65 E-value=7.4e-15 Score=132.06 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCC---CcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGT---SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
++.|.+.|...++....++|+++..+|..+++.|+... .-+|++|.+++.|+|++.+++||+||+||++....|+.|
T Consensus 500 LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAid 579 (1033)
T PLN03142 500 LDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQD 579 (1033)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHH
Confidence 34455566667889999999999999999999997643 357899999999999999999999999999999999999
Q ss_pred hhcCCCCceeE--EEEecc
Q psy6712 159 RSGRFGRKGVA--ISFVKS 175 (210)
Q Consensus 159 R~gR~g~~g~~--~~~~~~ 175 (210)
|+.|.|+...| +-|+..
T Consensus 580 RaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 580 RAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred HhhhcCCCceEEEEEEEeC
Confidence 99999996554 344444
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7e-15 Score=128.99 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------------------- 138 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------------------- 138 (210)
.+.+++.|...++++..+|+.++..++..+.++|+.|. |+|||++++||.|+-=-
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 78899999999999999999999999999999999998 99999999999998511
Q ss_pred ---------c-----EEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 139 ---------S-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 139 ---------~-----~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
. +||-...+.|..-=-|..||+||+|.+|.+..|++-+|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 778777888888888999999999999999999987654
No 95
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.61 E-value=2.2e-14 Score=117.33 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcC--ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMREAN--FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
++.+++.|++.+ ..+..+||.+++.+|.+. ++.++||||+++++|+|+|.. +|| ++ |.+...|+||+||
T Consensus 285 ~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR 355 (357)
T TIGR03158 285 VNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGR 355 (357)
T ss_pred HHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhccc
Confidence 777778887654 578889999999888643 478999999999999999986 555 55 8999999999999
Q ss_pred hc
Q psy6712 160 SG 161 (210)
Q Consensus 160 ~g 161 (210)
+|
T Consensus 356 ~g 357 (357)
T TIGR03158 356 LG 357 (357)
T ss_pred CC
Confidence 86
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.61 E-value=5.3e-14 Score=110.41 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=78.6
Q ss_pred HHHHHHHHHhc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec--CCCChhHHHHhh
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD--LPNNRELYIHRI 157 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~--~p~s~~~~~q~~ 157 (210)
.+.+++.|+++ ...+..+|+. .+.|.+..++|++|++++|++|+++++|+.+|++++.+.-. .-.+-+..+|.+
T Consensus 318 ~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIa 395 (441)
T COG4098 318 MEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIA 395 (441)
T ss_pred HHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHh
Confidence 66677777443 3456788887 56789999999999999999999999999999999887533 225788999999
Q ss_pred hhhcCCCC--ceeEEEEeccCcHHHHH
Q psy6712 158 GRSGRFGR--KGVAISFVKSDDIRILR 182 (210)
Q Consensus 158 GR~gR~g~--~g~~~~~~~~~~~~~~~ 182 (210)
||+||.-. .|.++.|.......+.+
T Consensus 396 GRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 396 GRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred hhccCCCcCCCCcEEEEeccchHHHHH
Confidence 99999854 68888888776555443
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=6.6e-14 Score=117.42 Aligned_cols=81 Identities=28% Similarity=0.560 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
+..++..+...++ +..+.+..+..+|..+++.|+.|++++|+++.++.+|+|+|+++++|...++.|...|+||+||..
T Consensus 296 a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 296 AYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred HHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 4445555544555 779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy6712 162 RF 163 (210)
Q Consensus 162 R~ 163 (210)
|.
T Consensus 375 R~ 376 (442)
T COG1061 375 RP 376 (442)
T ss_pred cC
Confidence 94
No 98
>KOG0951|consensus
Probab=99.56 E-value=6.6e-15 Score=130.70 Aligned_cols=82 Identities=23% Similarity=0.380 Sum_probs=70.3
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE----EecC------CCChhHHHHhhhhhcCC
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI----NYDL------PNNRELYIHRIGRSGRF 163 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi----~~~~------p~s~~~~~q~~GR~gR~ 163 (210)
+..+.+|++|+..+|..+.+.|++|.++++|+|-.++||+++|.-+++| .||+ +.++.+..||.|||||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 4788899999999999999999999999999999999999999988888 4664 35799999999999998
Q ss_pred CC--ceeEEEEecc
Q psy6712 164 GR--KGVAISFVKS 175 (210)
Q Consensus 164 g~--~g~~~~~~~~ 175 (210)
+- .|..++....
T Consensus 688 ~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDH 701 (1674)
T ss_pred ccCcCCceeeccCc
Confidence 65 3555555443
No 99
>KOG0953|consensus
Probab=99.53 E-value=7.9e-14 Score=115.33 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCce-EEEecCCCCHhHHHHHHHHHhc--CCCcEEEEecCccccCCCCCCcEEEEecC---------CCC
Q psy6712 82 VDWLTEKMREANFT-VSSMHGDMPQKERDGIMKEFRS--GTSRVLITTDVWARGIDVQQVSLVINYDL---------PNN 149 (210)
Q Consensus 82 ~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~g~d~~~~~~vi~~~~---------p~s 149 (210)
.-.+...+.+.+.. +++++|++|++.|.+....|+. ++++|||||+++++|+|+ +++.||.++. |-+
T Consensus 369 I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it 447 (700)
T KOG0953|consen 369 IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDIT 447 (700)
T ss_pred HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceecc
Confidence 55566777666655 9999999999999999999997 889999999999999999 8888988774 356
Q ss_pred hhHHHHhhhhhcCCCC---ceeEEEEeccCcHHHHHHHHHHhcCccc
Q psy6712 150 RELYIHRIGRSGRFGR---KGVAISFVKSDDIRILRDIEQYYSTQID 193 (210)
Q Consensus 150 ~~~~~q~~GR~gR~g~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (210)
.++..|.+|||||.|. .|.+..+. .+.+..+.+.++.+.+
T Consensus 448 ~sqikQIAGRAGRf~s~~~~G~vTtl~----~eDL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 448 VSQIKQIAGRAGRFGSKYPQGEVTTLH----SEDLKLLKRILKRPVE 490 (700)
T ss_pred HHHHHHHhhcccccccCCcCceEEEee----HhhHHHHHHHHhCCch
Confidence 8889999999999975 46666655 3344445555554443
No 100
>KOG0385|consensus
Probab=99.52 E-value=6.3e-13 Score=113.57 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCC---CcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGT---SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
.+.+..+..-+++...-+.|.++.++|...++.|+... +-.|++|.+.+.|+|+..++.||.||..|+|..=+|...
T Consensus 500 LDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmD 579 (971)
T KOG0385|consen 500 LDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMD 579 (971)
T ss_pred HHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHH
Confidence 44455555556788888999999999999999998755 347899999999999999999999999999999999999
Q ss_pred hhcCCCCceeEEEE
Q psy6712 159 RSGRFGRKGVAISF 172 (210)
Q Consensus 159 R~gR~g~~g~~~~~ 172 (210)
||.|.|+...|.+|
T Consensus 580 RaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 580 RAHRIGQKKPVVVY 593 (971)
T ss_pred HHHhhCCcCceEEE
Confidence 99999997655444
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.3e-12 Score=115.35 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCC---Cc-----EEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ---VS-----LVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~---~~-----~vi~~~~p~s~~~~ 153 (210)
.+.++..|.+.+++...+++.-...+-.-+.++-+ .-.|.|||++++||.|+.- +. +||-...|.|..--
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid 658 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRID 658 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHH
Confidence 67888999999999999988744333333333322 2469999999999999842 22 78888899999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
-|..||+||+|.+|.+..|++-+|.
T Consensus 659 ~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 659 RQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HHHhcccccCCCCCceeEEEEcchH
Confidence 9999999999999999999987654
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=5.9e-14 Score=123.91 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=93.7
Q ss_pred HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC---CCc-----EEEE
Q psy6712 72 VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ---QVS-----LVIN 143 (210)
Q Consensus 72 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~---~~~-----~vi~ 143 (210)
++.++.....++.+++.|...++++..+|+ .+.+|+..+.+|..+...|+|||++++||+|++ .|. +||.
T Consensus 601 VLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg 678 (1025)
T PRK12900 601 VLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG 678 (1025)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC
Confidence 344566667799999999999999999997 588999999999999999999999999999998 444 4588
Q ss_pred ecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHH
Q psy6712 144 YDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIR 179 (210)
Q Consensus 144 ~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~ 179 (210)
++.|.|...|.|++||+||+|.+|.+.+|++..|.-
T Consensus 679 terhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 679 SERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999999999999999999876543
No 103
>PRK09694 helicase Cas3; Provisional
Probab=99.48 E-value=4.9e-13 Score=119.21 Aligned_cols=81 Identities=25% Similarity=0.524 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcC---ceEEEecCCCCHhHH----HHHHHHH-hcCC---CcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 82 VDWLTEKMREAN---FTVSSMHGDMPQKER----DGIMKEF-RSGT---SRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 82 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r----~~~~~~f-~~g~---~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
++.+++.|++.+ .++..+|+.++..+| +++++.| ++|+ ..|||+|+++++|+|+ +++++|....| .
T Consensus 573 Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--i 649 (878)
T PRK09694 573 AQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--V 649 (878)
T ss_pred HHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--H
Confidence 666777777654 689999999999888 4567788 6666 4799999999999999 68999988777 6
Q ss_pred hHHHHhhhhhcCCCC
Q psy6712 151 ELYIHRIGRSGRFGR 165 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~ 165 (210)
+.++||+||++|.+.
T Consensus 650 dsLiQRaGR~~R~~~ 664 (878)
T PRK09694 650 DLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHhccCCCCC
Confidence 899999999999975
No 104
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.47 E-value=8.8e-14 Score=114.76 Aligned_cols=109 Identities=27% Similarity=0.374 Sum_probs=95.2
Q ss_pred hCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC-----CCC
Q psy6712 75 YLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL-----PNN 149 (210)
Q Consensus 75 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~-----p~s 149 (210)
.+-..+.++.|.++|.+.|+++.++|++...-+|.+++..++.|.+++||+.+.+.+|+|+|.|.+|-.+|. ..|
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 333445599999999999999999999999999999999999999999999999999999999999988874 478
Q ss_pred hhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHH
Q psy6712 150 RELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 150 ~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
-.+.+|-+|||+|. ..|.++++.+.-...+-+.+
T Consensus 532 e~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 532 ERSLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred cchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 99999999999997 67999999976444443333
No 105
>KOG0947|consensus
Probab=99.47 E-value=1.8e-13 Score=119.11 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=68.4
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEe----c----CCCChhHHHHhhhhhcCCCC-
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINY----D----LPNNRELYIHRIGRSGRFGR- 165 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~----~----~p~s~~~~~q~~GR~gR~g~- 165 (210)
.++++||++-+--++-+.--|..|-+++|+||..+++|+|+|.-.+|+.. | -.-.+..|.||+|||||.|-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC
Confidence 57889999999888888999999999999999999999999987776632 1 12468999999999999987
Q ss_pred -ceeEEEEecc
Q psy6712 166 -KGVAISFVKS 175 (210)
Q Consensus 166 -~g~~~~~~~~ 175 (210)
.|.+++++..
T Consensus 712 ~tGTVii~~~~ 722 (1248)
T KOG0947|consen 712 ETGTVIIMCKD 722 (1248)
T ss_pred cCceEEEEecC
Confidence 5777777754
No 106
>KOG0950|consensus
Probab=99.47 E-value=2.9e-13 Score=117.98 Aligned_cols=91 Identities=29% Similarity=0.449 Sum_probs=80.0
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec----CCCChhHHHHhhhhhcCCCC--ce
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD----LPNNRELYIHRIGRSGRFGR--KG 167 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~----~p~s~~~~~q~~GR~gR~g~--~g 167 (210)
..+.++|++++.++|+.+..+|++|-..+++||+.++.|+++|...++|-+. ...+.-+|.||+|||||+|. .|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~G 602 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLG 602 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCc
Confidence 4788999999999999999999999999999999999999999999888542 34578999999999999987 58
Q ss_pred eEEEEeccCcHHHHHHH
Q psy6712 168 VAISFVKSDDIRILRDI 184 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (210)
.+++.+.+.+.....++
T Consensus 603 dsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 603 DSILIIKSSEKKRVREL 619 (1008)
T ss_pred ceEEEeeccchhHHHHH
Confidence 89999999887665533
No 107
>KOG0948|consensus
Probab=99.40 E-value=7.3e-14 Score=118.97 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=69.6
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE----ecC----CCChhHHHHhhhhhcCCCC-
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN----YDL----PNNRELYIHRIGRSGRFGR- 165 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~----~~~----p~s~~~~~q~~GR~gR~g~- 165 (210)
.++.+|+++-+--++-+.--|.+|-+++|+||..++.|+|+|.-++|+- ||- .-|-..|+||.|||||.|.
T Consensus 448 GIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 448 GIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred ccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 5778999999988888899999999999999999999999999777763 331 2367899999999999997
Q ss_pred -ceeEEEEeccC
Q psy6712 166 -KGVAISFVKSD 176 (210)
Q Consensus 166 -~g~~~~~~~~~ 176 (210)
.|.|+++++..
T Consensus 528 drGivIlmiDek 539 (1041)
T KOG0948|consen 528 DRGIVILMIDEK 539 (1041)
T ss_pred CCceEEEEecCc
Confidence 47888888753
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.4e-12 Score=112.08 Aligned_cols=123 Identities=21% Similarity=0.418 Sum_probs=96.0
Q ss_pred HHHHHHHHHhc--CceEEEecCCCCHh--HHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC----------
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMPQK--ERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP---------- 147 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p---------- 147 (210)
++.+.+.|+.. +.++..+.++.+.. .-+..++.|.+|+.+|||+|++++.|.|+|+++.|...|.+
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 67777777654 56777788776543 35678999999999999999999999999999998765543
Q ss_pred --CChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHH-----HhcCccccccCCccccCCCCCCCC
Q psy6712 148 --NNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQ-----YYSTQIDEMPMNGKRSLHSYPARY 210 (210)
Q Consensus 148 --~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
.....+.|-.|||||.+.+|.+++-....+...++.+.. +++.++.+ +-...||||+
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~------Rk~~~~PPf~ 636 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAE------RKELGLPPFS 636 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHH------HHhcCCCChh
Confidence 235667788999999999999999999888877776654 44444444 5555899985
No 109
>KOG0384|consensus
Probab=99.35 E-value=2.4e-11 Score=108.36 Aligned_cols=104 Identities=20% Similarity=0.306 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCC---CcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGT---SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
.+.|+++|..++++.--+.|.+.-+.|+..++.|+... +-.|+||.+.+.|||+..++.||+||..|+|..=+|...
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 67788999999999999999999999999999998654 458999999999999999999999999999999999999
Q ss_pred hhcCCCCcee--EEEEeccC--cHHHHHHHH
Q psy6712 159 RSGRFGRKGV--AISFVKSD--DIRILRDIE 185 (210)
Q Consensus 159 R~gR~g~~g~--~~~~~~~~--~~~~~~~~~ 185 (210)
||.|.|+... ++=|++.. |.+.+.+-.
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 9999998654 56666654 444444433
No 110
>KOG0949|consensus
Probab=99.35 E-value=7.1e-12 Score=109.64 Aligned_cols=81 Identities=26% Similarity=0.330 Sum_probs=69.0
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec-CCCChhHHHHhhhhhcCCCC--ceeEEE
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD-LPNNRELYIHRIGRSGRFGR--KGVAIS 171 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~-~p~s~~~~~q~~GR~gR~g~--~g~~~~ 171 (210)
.+.++|++|+...|..+.--|+.|...+|++|..++.|+|+|--++|+--| +.-++-.|-|++|||||.|- -|.++.
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 567899999999999999999999999999999999999998665555444 55789999999999999986 366666
Q ss_pred Eecc
Q psy6712 172 FVKS 175 (210)
Q Consensus 172 ~~~~ 175 (210)
+--+
T Consensus 1044 mgiP 1047 (1330)
T KOG0949|consen 1044 MGIP 1047 (1330)
T ss_pred EeCc
Confidence 5544
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.8e-12 Score=110.17 Aligned_cols=152 Identities=19% Similarity=0.382 Sum_probs=116.0
Q ss_pred CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh-cc----chHHHH-------------------H---------
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML-NK----GFKEQI-------------------Y--------- 70 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~-~~----~~~~~~-------------------~--------- 70 (210)
...|-+.|.|.|++.+.+... ++.++++|+||+|+=. +. ++..++ .
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~a 217 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCC
Confidence 446889999999998886554 7999999999999842 11 111110 0
Q ss_pred -------------------------------------------HHHhhCCCchhHHHHHHHHHh----cCceEEEecCCC
Q psy6712 71 -------------------------------------------DVYRYLPPATQVDWLTEKMRE----ANFTVSSMHGDM 103 (210)
Q Consensus 71 -------------------------------------------~i~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~ 103 (210)
.|+.|+|.....+...+.|++ ....+.++||.+
T Consensus 218 pvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L 297 (845)
T COG1643 218 PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGAL 297 (845)
T ss_pred CEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccC
Confidence 111123333336777777776 468899999999
Q ss_pred CHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC------------------CCChhHHHHhhhhhcCCCC
Q psy6712 104 PQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 104 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~------------------p~s~~~~~q~~GR~gR~g~ 165 (210)
|.+++..+++.--.|+-+|+++|++++.++.+|++.+||..+. |-|..+..||.|||||- .
T Consensus 298 ~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~ 376 (845)
T COG1643 298 SAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-G 376 (845)
T ss_pred CHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-C
Confidence 9999999888887787779999999999999999999996442 35788888999999998 6
Q ss_pred ceeEEEEeccCc
Q psy6712 166 KGVAISFVKSDD 177 (210)
Q Consensus 166 ~g~~~~~~~~~~ 177 (210)
+|.|+=+++..+
T Consensus 377 pGicyRLyse~~ 388 (845)
T COG1643 377 PGICYRLYSEED 388 (845)
T ss_pred CceEEEecCHHH
Confidence 899999998743
No 112
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=9.3e-12 Score=111.14 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=68.2
Q ss_pred EEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE----ec----CCCChhHHHHhhhhhcCCCCc-
Q psy6712 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN----YD----LPNNRELYIHRIGRSGRFGRK- 166 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~----~~----~p~s~~~~~q~~GR~gR~g~~- 166 (210)
++++|++|-+..+..+...|..|-.+++++|..++.|+|+|.-++|+- +| .+-++..|.|+.|||||.|.+
T Consensus 447 iavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 447 IAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 458999999999999999999999999999999999999998777762 33 346899999999999999984
Q ss_pred -eeEEEEecc
Q psy6712 167 -GVAISFVKS 175 (210)
Q Consensus 167 -g~~~~~~~~ 175 (210)
|.+++.-.+
T Consensus 527 ~G~vI~~~~~ 536 (1041)
T COG4581 527 LGTVIVIEPP 536 (1041)
T ss_pred cceEEEecCC
Confidence 666666444
No 113
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.31 E-value=6.2e-11 Score=108.64 Aligned_cols=69 Identities=23% Similarity=0.467 Sum_probs=60.9
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCC-cEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTS-RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
.+..++|+++ ++.+.++.|++++. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|...
T Consensus 733 ~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 733 AVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 3456778775 46779999999887 689999999999999999999999999999999999999999743
No 114
>KOG0922|consensus
Probab=99.28 E-value=2.1e-11 Score=103.18 Aligned_cols=96 Identities=18% Similarity=0.355 Sum_probs=79.2
Q ss_pred HHHHHHHHHhc----C----ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec--------
Q psy6712 82 VDWLTEKMREA----N----FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD-------- 145 (210)
Q Consensus 82 ~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~-------- 145 (210)
++.+++.|.+. . .-+.++||.+|.+++.++++.--.|..+++++|++++..+.+|.+.+||..+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 56666666553 1 1357899999999999999998889999999999999999999999999543
Q ss_pred C----------CCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 146 L----------PNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 146 ~----------p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
+ |-|..+-.||.|||||. .+|+|+-++...+.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 2 45788888999999998 57999999987554
No 115
>KOG4150|consensus
Probab=99.25 E-value=1.2e-10 Score=97.39 Aligned_cols=102 Identities=19% Similarity=0.348 Sum_probs=81.6
Q ss_pred EEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEec-
Q psy6712 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVK- 174 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~- 174 (210)
+..+.|+.+.++|+++....--|+..-+|+|++++.|+|+...+.|++.++|.|...+.|..|||||.++++.++..+.
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 3447789999999999999999999999999999999999999999999999999999999999999988776655554
Q ss_pred -cCcHHHHHHHHHHhcCccccccC
Q psy6712 175 -SDDIRILRDIEQYYSTQIDEMPM 197 (210)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
+-+...+..-+..+..+-.++.+
T Consensus 640 ~PVDQ~Y~~HP~~l~~~pN~EL~L 663 (1034)
T KOG4150|consen 640 GPVDQYYMSHPDKLFGSPNEELHL 663 (1034)
T ss_pred cchhhHhhcCcHHHhCCCcceeEE
Confidence 33444444444444444444333
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.21 E-value=5.4e-10 Score=98.70 Aligned_cols=61 Identities=23% Similarity=0.552 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe----cCccccCCCCC-CcEEEEecCC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT----DVWARGIDVQQ-VSLVINYDLP 147 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T----~~~~~g~d~~~-~~~vi~~~~p 147 (210)
++.+++.|++.|+++..+|+. .++.++.|..|++++||+. ..+.+|+|+|. +.++|+++.|
T Consensus 351 aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 351 AEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 899999999999999999984 3788999999999999887 47889999995 8899998877
No 117
>KOG0923|consensus
Probab=99.13 E-value=2.9e-10 Score=96.35 Aligned_cols=82 Identities=18% Similarity=0.372 Sum_probs=72.6
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec------------------CCCChhHHH
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD------------------LPNNRELYI 154 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~------------------~p~s~~~~~ 154 (210)
.+-+.++|+.+|.+.+.++++.--.|..+|++||++++..+.++++.+||.-+ .|-|..+-.
T Consensus 506 eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred eEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhh
Confidence 46789999999999999999999889999999999999999999999999533 245778888
Q ss_pred HhhhhhcCCCCceeEEEEecc
Q psy6712 155 HRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 155 q~~GR~gR~g~~g~~~~~~~~ 175 (210)
||+|||||. .+|+|+-+++.
T Consensus 586 QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 586 QRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred hhccccCCC-CCCceEEeech
Confidence 999999998 47999999974
No 118
>KOG0387|consensus
Probab=99.09 E-value=2.4e-09 Score=92.43 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=82.1
Q ss_pred HHHHHHHHH-hcCceEEEecCCCCHhHHHHHHHHHhcCCCc--EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMR-EANFTVSSMHGDMPQKERDGIMKEFRSGTSR--VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
.+.+...|. .+++...-+.|..+...|...++.|+++..- .|++|.+.+.|+|+..++-||.|||.|+|+.=.|..-
T Consensus 559 LdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAre 638 (923)
T KOG0387|consen 559 LDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARE 638 (923)
T ss_pred HHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHH
Confidence 566777776 6899999999999999999999999977653 6789999999999999999999999999999999999
Q ss_pred hhcCCCCceeEE--EEeccC
Q psy6712 159 RSGRFGRKGVAI--SFVKSD 176 (210)
Q Consensus 159 R~gR~g~~g~~~--~~~~~~ 176 (210)
||-|.|+...|+ =+++..
T Consensus 639 RawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 639 RAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred HHHhhcCccceEEEEEecCC
Confidence 999999965544 445544
No 119
>KOG0920|consensus
Probab=99.09 E-value=3.4e-10 Score=100.34 Aligned_cols=106 Identities=24% Similarity=0.472 Sum_probs=87.5
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE--------ecCC----------CChhHHHH
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN--------YDLP----------NNRELYIH 155 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~--------~~~p----------~s~~~~~q 155 (210)
+-+.++|+.|+..+++.++..--.|..+|+++|++++..+.++++-+||. ||+- -|...-.|
T Consensus 445 ~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~Q 524 (924)
T KOG0920|consen 445 FAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQ 524 (924)
T ss_pred eEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHH
Confidence 67889999999999999999999999999999999999999999999995 4433 35666679
Q ss_pred hhhhhcCCCCceeEEEEeccCcHHHH---HHHHHHhcCccccccCCcc
Q psy6712 156 RIGRSGRFGRKGVAISFVKSDDIRIL---RDIEQYYSTQIDEMPMNGK 200 (210)
Q Consensus 156 ~~GR~gR~g~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 200 (210)
|.|||||. .+|.|+-+++......+ ..+-+.+...++++.+..+
T Consensus 525 R~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK 571 (924)
T KOG0920|consen 525 RRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIK 571 (924)
T ss_pred hcccccCc-cCCeeEEeechhhhhhcccccCChHHHhChHHHhhheee
Confidence 99999998 89999999987544332 3566777777777776665
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=5.5e-09 Score=90.65 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC----------c-----EEEEecC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------S-----LVINYDL 146 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------~-----~vi~~~~ 146 (210)
.+.+++.|.+.++++..+++.-...+-..+.++=+ .-.|.|||++++||.|+--- . +||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 78899999999999999998744443333333322 23689999999999998521 1 8888888
Q ss_pred CCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 147 PNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 147 p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
+.|..---|..||+||+|.+|.+-.|++-+|.
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 99999889999999999999999999986653
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.03 E-value=1.3e-09 Score=96.87 Aligned_cols=92 Identities=23% Similarity=0.380 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh----cCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR----SGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRI 157 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~ 157 (210)
+..+.+.|++.+.++..+||.++...|.+.++.++ .....|+|+|++++.|+|+ +.+.+|-- +..+++.+||+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~aPidSLIQR~ 529 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--LAPIDSLIQRA 529 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--CCCHHHHHHHH
Confidence 77888888887778999999999999988888554 4677899999999999999 57777653 66788999999
Q ss_pred hhhcCCC--CceeEEEEeccC
Q psy6712 158 GRSGRFG--RKGVAISFVKSD 176 (210)
Q Consensus 158 GR~gR~g--~~g~~~~~~~~~ 176 (210)
||++|.| ..|.++++....
T Consensus 530 GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHhhcccccCCceeEeeccc
Confidence 9999999 467777777653
No 122
>KOG0389|consensus
Probab=99.01 E-value=9e-09 Score=88.90 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCC--cEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTS--RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
.+.|...|.-.++...-+.|......|+..++.|...+. -.|++|.+.+.|+|+..+++||.+|...++-+=.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 444555555568888889999999999999999987653 367999999999999999999999999999999999999
Q ss_pred hcCCCCcee--EEEEeccC
Q psy6712 160 SGRFGRKGV--AISFVKSD 176 (210)
Q Consensus 160 ~gR~g~~g~--~~~~~~~~ 176 (210)
+.|.|+... ++-+++..
T Consensus 870 cHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHhhCCcceeEEEEEEecC
Confidence 999998654 45556654
No 123
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.00 E-value=8.3e-09 Score=77.89 Aligned_cols=91 Identities=38% Similarity=0.710 Sum_probs=75.3
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+..+....+.++++|+|+||+++.+.+.++...+++++++|+||+|.+.+.++...+..+...++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--- 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--- 173 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc---
Confidence 67889999999988877777778999999999999999988888999999999999999988887777777765432
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQK 106 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~ 106 (210)
+..+..+.+.++..
T Consensus 174 -----------~~~~~~~SAT~~~~ 187 (203)
T cd00268 174 -----------DRQTLLFSATMPKE 187 (203)
T ss_pred -----------ccEEEEEeccCCHH
Confidence 55666677766643
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=9.9e-09 Score=90.40 Aligned_cols=94 Identities=28% Similarity=0.402 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcC-CCcEEEEecCccccCCCCCCc--------EEEEecCCCChhH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSG-TSRVLITTDVWARGIDVQQVS--------LVINYDLPNNREL 152 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~g~d~~~~~--------~vi~~~~p~s~~~ 152 (210)
.+.+++.|.+.|+++..+++.-...+-.-+ + +.| .-.|.|||++++||.|+.--. +||....|.|..-
T Consensus 439 SE~ls~~L~~~gi~h~vLNAk~~e~EA~II--a-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 439 SETLHELLLEANIPHTVLNAKQNAREAEII--A-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHCCCCceeecccchhhHHHHH--H-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 788999999999999999987433333322 2 334 346899999999999985322 8999889999888
Q ss_pred HHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 153 YIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 153 ~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
--|..||+||+|.+|.+-.|++-.|.
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecchH
Confidence 88999999999999999888886543
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=5.9e-09 Score=92.41 Aligned_cols=95 Identities=21% Similarity=0.321 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC-C-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ-Q----------------------- 137 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~-~----------------------- 137 (210)
.+.+++.|...++++-.+++.....+-.-+.++-+ .-.|.|||++++||.|+- .
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 68889999999998888888744433333333322 336899999999999983 1
Q ss_pred --------Cc-----EEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 138 --------VS-----LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 138 --------~~-----~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
+. +||-...+.|..-=-|..||+||+|.+|.+-.|++-+|.
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 778788888888888999999999999999999987543
No 126
>KOG0924|consensus
Probab=98.95 E-value=2.9e-09 Score=90.74 Aligned_cols=93 Identities=18% Similarity=0.391 Sum_probs=78.6
Q ss_pred HHHHHHHHHh------cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec----------
Q psy6712 82 VDWLTEKMRE------ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD---------- 145 (210)
Q Consensus 82 ~~~l~~~l~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~---------- 145 (210)
+..+.+.|.+ .++.+..+++.+|..-+.+++..-..|..+++|+|++++..+.+|++.+||..+
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 4555555544 268999999999999999999988889999999999999999999999999654
Q ss_pred --------CCCChhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 146 --------LPNNRELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 146 --------~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
.|-|...-.||.|||||. .+|.|+-++..
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe 696 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTE 696 (1042)
T ss_pred cccceeEEEechhccchhhccccCCC-CCcceeeehhh
Confidence 356777788999999998 57899988876
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.94 E-value=5e-09 Score=76.57 Aligned_cols=75 Identities=23% Similarity=0.451 Sum_probs=61.1
Q ss_pred CceEEEEEcCcchH-HHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC
Q psy6712 2 NVQCHACIGGTNLS-EDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL 76 (210)
Q Consensus 2 ~i~~~~~~gg~~~~-~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~ 76 (210)
++++..++||.+.. .+...+.++++|+|+||+++.+.+..+..++.+++++|+||+|.+.++.+...+..++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 56888999999866 4445556789999999999999999876688889999999999999877777666666443
No 128
>KOG0390|consensus
Probab=98.84 E-value=2.5e-08 Score=87.32 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCc---EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
.+.+.+..+.+|..+..++|.|+..+|..+++.|+..... .|.+|-+.+.|+++-.++.+|.||++|+|+.-.|.++
T Consensus 608 ldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAma 687 (776)
T KOG0390|consen 608 LDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMA 687 (776)
T ss_pred HHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHH
Confidence 4444555566799999999999999999999999975443 5677789999999999999999999999999999999
Q ss_pred hhcCCCCceeEEEE
Q psy6712 159 RSGRFGRKGVAISF 172 (210)
Q Consensus 159 R~gR~g~~g~~~~~ 172 (210)
||-|.|+.-.|+++
T Consensus 688 R~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIY 701 (776)
T ss_pred HhccCCCcceEEEE
Confidence 99999997655544
No 129
>KOG1123|consensus
Probab=98.83 E-value=5.9e-07 Score=74.65 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=67.7
Q ss_pred EecCCCCHhHHHHHHHHHh-cCCCcEEEEecCccccCCCCCCcEEEEecCC-CChhHHHHhhhhhcCCCC------ceeE
Q psy6712 98 SMHGDMPQKERDGIMKEFR-SGTSRVLITTDVWARGIDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGR------KGVA 169 (210)
Q Consensus 98 ~~~~~~~~~~r~~~~~~f~-~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p-~s~~~~~q~~GR~gR~g~------~g~~ 169 (210)
+++|..++.+|.++++.|+ +.++..++.+-..-..+|+|.++++|+...- .|..+--||.||..|..+ ....
T Consensus 567 fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafF 646 (776)
T KOG1123|consen 567 FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFF 646 (776)
T ss_pred eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceee
Confidence 4889999999999999998 4567788888888999999999999986543 577888899999888733 3557
Q ss_pred EEEeccCcHHHHH
Q psy6712 170 ISFVKSDDIRILR 182 (210)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (210)
+++++.+..+++.
T Consensus 647 YSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 647 YSLVSKDTQEMYY 659 (776)
T ss_pred eeeeecchHHHHh
Confidence 7777776555443
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=98.73 E-value=4.1e-08 Score=86.06 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=58.9
Q ss_pred ceEEEecCCCCHhHHHHHHH---HHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 94 FTVSSMHGDMPQKERDGIMK---EFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~---~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
+.+.-+.|.|+-.+|....+ .|...+++||--..++++|+|+|..+-||++++-.+..+.+|.+||+.|...
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCc
Confidence 34444568899888844333 2345678899999999999999999999999999999999999999999743
No 131
>KOG1002|consensus
Probab=98.70 E-value=1.8e-06 Score=71.73 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcC-CCcEE-EEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSG-TSRVL-ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
.+.+.-.|.+.|+++.-+.|+|++..|...++.|.+. +++|+ ++-.+.+..+|+..+.+|+.+|+.|++.--+|.-.|
T Consensus 651 LDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DR 730 (791)
T KOG1002|consen 651 LDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDR 730 (791)
T ss_pred HHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhh
Confidence 3445555666799999999999999999999999864 45554 555777788999999999999999999999999999
Q ss_pred hcCCCC--ceeEEEEecc
Q psy6712 160 SGRFGR--KGVAISFVKS 175 (210)
Q Consensus 160 ~gR~g~--~g~~~~~~~~ 175 (210)
..|.|+ +=+++-|+-+
T Consensus 731 iHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 731 IHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred HHhhcCccceeEEEeehh
Confidence 999998 4456666654
No 132
>KOG0386|consensus
Probab=98.68 E-value=5e-07 Score=80.20 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCc---EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
...+..+|.-.++...-+.|....++|-..++.|+..+.. .|.+|...+.|+|+..++.||.||..|++....|+-.
T Consensus 739 mdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqd 818 (1157)
T KOG0386|consen 739 MDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQD 818 (1157)
T ss_pred HHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHH
Confidence 4456666766788889999999999999999999977654 6799999999999999999999999999999999999
Q ss_pred hhcCCCCceeEEEEec
Q psy6712 159 RSGRFGRKGVAISFVK 174 (210)
Q Consensus 159 R~gR~g~~g~~~~~~~ 174 (210)
||.|.|+...+-++..
T Consensus 819 rahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 819 RAHRIGQKKEVRVLRL 834 (1157)
T ss_pred HHHHhhchhheeeeee
Confidence 9999998665555543
No 133
>KOG0392|consensus
Probab=98.67 E-value=4.3e-07 Score=82.04 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=67.8
Q ss_pred EecCCCCHhHHHHHHHHHhcC-CCcEE-EEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCcee--EEEEe
Q psy6712 98 SMHGDMPQKERDGIMKEFRSG-TSRVL-ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AISFV 173 (210)
Q Consensus 98 ~~~~~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~--~~~~~ 173 (210)
-+.|..++.+|.++.++|+++ .+++| ++|...+.|+|+..++.||+++=.|++..=+|.+.||.|.|++-. ++=++
T Consensus 1372 RLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlI 1451 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLI 1451 (1549)
T ss_pred EecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeeh
Confidence 578999999999999999998 67765 777899999999999999999999999999999999999998654 34444
Q ss_pred cc
Q psy6712 174 KS 175 (210)
Q Consensus 174 ~~ 175 (210)
..
T Consensus 1452 tr 1453 (1549)
T KOG0392|consen 1452 TR 1453 (1549)
T ss_pred hc
Confidence 43
No 134
>KOG0926|consensus
Probab=98.66 E-value=2.9e-08 Score=86.12 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=68.5
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC------------------CChhHHHH
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP------------------NNRELYIH 155 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p------------------~s~~~~~q 155 (210)
.-|..+++-++.+.+..+++.--.|..=++|+|+.++..+.+|++.+||..+.. -|..+--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 467788888999999999998888888899999999999999999999965432 23444559
Q ss_pred hhhhhcCCCCceeEEEEeccC
Q psy6712 156 RIGRSGRFGRKGVAISFVKSD 176 (210)
Q Consensus 156 ~~GR~gR~g~~g~~~~~~~~~ 176 (210)
|+|||||. ..|.|+-++++.
T Consensus 685 RAGRAGRt-gpGHcYRLYSSA 704 (1172)
T KOG0926|consen 685 RAGRAGRT-GPGHCYRLYSSA 704 (1172)
T ss_pred hccccCCC-CCCceeehhhhH
Confidence 99999998 479999999863
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.65 E-value=1.1e-06 Score=77.99 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=41.8
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHH-HHHHhcC------ccCCCccEEEechhhHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVF-DMIRRRV------LRTRNIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~-~~l~~~~------~~~~~~~~lviDE~~~l~ 61 (210)
+|++|.++.++.+..+..+.. .+||..+|...+- +.|+.+. .-...+.+.|+||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 689999999988876544443 6799999995432 3333322 124678899999999985
No 136
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.62 E-value=4.1e-06 Score=69.77 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=80.0
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec--CccccCCCCCCcEEEEecCCCChhHHHHhhhhhcC
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD--VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 162 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR 162 (210)
+-.+|++.++....++.-.+..+....-..|..|+.++|+.|. -.-+-..+.++..||.|.+|..+.=|...++..+.
T Consensus 316 lRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~ 395 (442)
T PF06862_consen 316 LRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDE 395 (442)
T ss_pred HHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcc
Confidence 4455666788899999999999999999999999999999995 23344567789999999999999999998866554
Q ss_pred CCC------ceeEEEEeccCcHHHHHHH
Q psy6712 163 FGR------KGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 163 ~g~------~g~~~~~~~~~~~~~~~~~ 184 (210)
... ...|.++++.-|...++.+
T Consensus 396 ~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 396 SSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred cccccccccCceEEEEecHhHHHHHHHH
Confidence 432 4678999988777665544
No 137
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.54 E-value=6.5e-07 Score=78.33 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=52.1
Q ss_pred eEEEecCCCCHhHHHHHHHHHhc-C-CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRS-G-TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~-g-~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
-+..+.++-... +..++.|.. . .-+|.++.+++..|+|.|.|-.++.+..-.|...|.||+||+-|.
T Consensus 457 ~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 457 YAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 455555554333 334566654 2 336889999999999999999999999999999999999999886
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=2.9e-06 Score=75.54 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHH-----HHHHHh--cCccCCCccEEEechhhHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-----FDMIRR--RVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l-----~~~l~~--~~~~~~~~~~lviDE~~~l~ 61 (210)
+|++|.++.++.+..+.. -.-.+||+.+|+..+ .+.+.. +......+.+.|+||+|.++
T Consensus 153 LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 689999998887665433 334889999999876 444332 22335788899999999985
No 139
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.44 E-value=3e-05 Score=68.73 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=46.2
Q ss_pred HHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 109 DGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 109 ~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
...+++|+. +..++||+++++..|+|.|.+++++...+-.+ ..++|.+||+.|.
T Consensus 580 ~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 580 YKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 467888875 67899999999999999999999988776555 4589999999994
No 140
>KOG1000|consensus
Probab=98.34 E-value=6.9e-06 Score=68.32 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCC-Cc-EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGT-SR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
.+-+...+.++++...-+.|..+..+|....+.|...+ .. -+++..+++.|+++...+.|++..++|++.-.+|.-.|
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 45566666777888999999999999999999998654 33 34666889999999999999999999999999999999
Q ss_pred hcCCCCcee--EEEEecc
Q psy6712 160 SGRFGRKGV--AISFVKS 175 (210)
Q Consensus 160 ~gR~g~~g~--~~~~~~~ 175 (210)
+.|.|+.+. ++.|+..
T Consensus 585 aHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred hhhccccceeeEEEEEec
Confidence 999998654 3334443
No 141
>KOG0925|consensus
Probab=98.33 E-value=2.6e-06 Score=70.67 Aligned_cols=77 Identities=19% Similarity=0.404 Sum_probs=57.3
Q ss_pred ceEEEecCCCCHhHHHHHHHHHh---cC--CCcEEEEecCccccCCCCCCcEEEEecC------------------CCCh
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFR---SG--TSRVLITTDVWARGIDVQQVSLVINYDL------------------PNNR 150 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~ilv~T~~~~~g~d~~~~~~vi~~~~------------------p~s~ 150 (210)
+++..+| +.++..+++..- +| ..+++|+|++++..+.++.+.+||.-++ |-|.
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 5777787 333333333322 12 2379999999999999999999996442 5677
Q ss_pred hHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
.+-.||.|||||. ++|+|+.++.+
T Consensus 363 asA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 363 ASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred hHHHHHhhhccCC-CCCceEEeecH
Confidence 8888999999997 78999999975
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=1e-06 Score=79.25 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC---CCc-----EEEEecCCCCh
Q psy6712 79 ATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ---QVS-----LVINYDLPNNR 150 (210)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~---~~~-----~vi~~~~p~s~ 150 (210)
....+.+++.|...|+++-++++..-..+-.-+.++=+. -.|-|||++++||.|+- .+. +||-...+.|.
T Consensus 638 Ve~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSr 715 (1112)
T PRK12901 638 VEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESR 715 (1112)
T ss_pred HHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcH
Confidence 344889999999999999999887554444444444333 36899999999999985 222 78888889999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.---|..||+||+|.+|.+-.|++-+|.
T Consensus 716 RID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 716 RVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred HHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999999999999999986543
No 143
>KOG0951|consensus
Probab=98.29 E-value=3.1e-06 Score=76.94 Aligned_cols=81 Identities=14% Similarity=0.278 Sum_probs=64.3
Q ss_pred ecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE-----ec------CCCChhHHHHhhhhhcCCCCce
Q psy6712 99 MHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN-----YD------LPNNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 99 ~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~-----~~------~p~s~~~~~q~~GR~gR~g~~g 167 (210)
=|.+++.....-+-..|..|.+.++|.+.- .+|..... +.|+. || .+.+....+|+.|+|.| .|
T Consensus 1411 g~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~ 1485 (1674)
T KOG0951|consen 1411 GHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AG 1485 (1674)
T ss_pred cccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---Cc
Confidence 399999999999999999999999998877 77766633 44442 33 35679999999999988 57
Q ss_pred eEEEEeccCcHHHHHHH
Q psy6712 168 VAISFVKSDDIRILRDI 184 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (210)
.|++++.......++++
T Consensus 1486 k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1486 KCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cEEEEecCchHHHHHHh
Confidence 89999998877766544
No 144
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.26 E-value=3.9e-06 Score=76.41 Aligned_cols=106 Identities=18% Similarity=0.319 Sum_probs=86.6
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcC--CCcEEEEecCccccCCCCCCcEEEEecCCC
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSG--TSRVLITTDVWARGIDVQQVSLVINYDLPN 148 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~ 148 (210)
+++.+.+.......+...+...++....++|.++.+.|...++.|.++ ..-.++++.+.+.|+|+..+++||+||++|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 334444444447778888888888999999999999999999999986 334667778999999999999999999999
Q ss_pred ChhHHHHhhhhhcCCCCcee--EEEEeccC
Q psy6712 149 NRELYIHRIGRSGRFGRKGV--AISFVKSD 176 (210)
Q Consensus 149 s~~~~~q~~GR~gR~g~~g~--~~~~~~~~ 176 (210)
++....|...|+.|.|+... ++-++...
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999999999998655 44444443
No 145
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.17 E-value=1.2e-05 Score=72.86 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred ceEEEecCCCCHhHHHHHHHHH----------------------hc----CCCcEEEEecCccccCCCCCCcEEEEecCC
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEF----------------------RS----GTSRVLITTDVWARGIDVQQVSLVINYDLP 147 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p 147 (210)
+...++|+..+...|..+.+.. .+ +...|+|+|++++.|+|+ +.+.+|- -|
T Consensus 787 i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~ 863 (1110)
T TIGR02562 787 IHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DP 863 (1110)
T ss_pred eeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--cc
Confidence 5688899998776666555432 12 356799999999999999 5666554 47
Q ss_pred CChhHHHHhhhhhcCCCC
Q psy6712 148 NNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 148 ~s~~~~~q~~GR~gR~g~ 165 (210)
.+..+.+|++||+.|.+.
T Consensus 864 ~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 864 SSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CcHHHHHHHhhccccccc
Confidence 889999999999999865
No 146
>KOG0388|consensus
Probab=98.08 E-value=2.1e-05 Score=68.17 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCc-EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
.+.+.++|.-+++...-+.|......|+.++..|...++- .|++|.+.+.|+++..++.||+||..|++..=.|...||
T Consensus 1057 ~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1057 IDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred HHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 6778888888899999999999999999999999976553 679999999999999999999999999999999999999
Q ss_pred cCCCCcee
Q psy6712 161 GRFGRKGV 168 (210)
Q Consensus 161 gR~g~~g~ 168 (210)
.|-|+.-.
T Consensus 1137 HRLGQTrd 1144 (1185)
T KOG0388|consen 1137 HRLGQTRD 1144 (1185)
T ss_pred HhccCccc
Confidence 99998544
No 147
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.91 E-value=8.3e-05 Score=54.96 Aligned_cols=98 Identities=29% Similarity=0.581 Sum_probs=66.1
Q ss_pred EEEEEcCcchHHHHHHhcCCC-cEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchhHH
Q psy6712 5 CHACIGGTNLSEDLRKLDYGQ-HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVD 83 (210)
Q Consensus 5 ~~~~~gg~~~~~~~~~l~~~~-~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~~~ 83 (210)
.....++....+.+..+..+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~------- 157 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL------- 157 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-------
Confidence 445566666566777777766 999999999999998877778889999999999998654444444444322
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS 117 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 117 (210)
..+.....+.+..+ .........+..
T Consensus 158 -------~~~~~~v~~saT~~-~~~~~~~~~~~~ 183 (201)
T smart00487 158 -------PKNVQLLLLSATPP-EEIENLLELFLN 183 (201)
T ss_pred -------CccceEEEEecCCc-hhHHHHHHHhcC
Confidence 22445555555444 444444444443
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.84 E-value=9.5e-05 Score=51.40 Aligned_cols=64 Identities=36% Similarity=0.659 Sum_probs=50.8
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchH
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFK 66 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~ 66 (210)
+++..+.++.....+......+.+|+++|++.+...+..........+++|+||+|.+......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 58 IKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred cEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchH
Confidence 5677888887777666666678999999999998887766555678889999999999865433
No 149
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.72 E-value=0.00014 Score=66.38 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=66.3
Q ss_pred CCchhHHHHHHHHHh----cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCc--EEEEecCCC--
Q psy6712 77 PPATQVDWLTEKMRE----ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS--LVINYDLPN-- 148 (210)
Q Consensus 77 ~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~--~vi~~~~p~-- 148 (210)
+.....+.+.+.|.. .++.+. ..+.. ..|.++++.|++++..+|++|+.+++|+|+|+.. +||...+|.
T Consensus 682 tS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~ 758 (850)
T TIGR01407 682 TSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFAN 758 (850)
T ss_pred CCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCC
Confidence 344447788888764 344433 33333 5788899999999999999999999999999766 555555441
Q ss_pred ----------------------------ChhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 149 ----------------------------NRELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 149 ----------------------------s~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
....+.|.+||.-|...+.-++++++.
T Consensus 759 p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 759 PKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 124455888999998765445555554
No 150
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.68 E-value=0.00016 Score=56.89 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCcEEEEecCccccCCCCC--------CcEEEEecCCCChhHHHHhhhhhcCCCC-ceeEEEEecc---Cc
Q psy6712 110 GIMKEFRSGTSRVLITTDVWARGIDVQQ--------VSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAISFVKS---DD 177 (210)
Q Consensus 110 ~~~~~f~~g~~~ilv~T~~~~~g~d~~~--------~~~vi~~~~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~~---~~ 177 (210)
...++|.+|+.+|+|.|++.+.|+.+.. -.+-|...+||+....+|..||+.|.|+ ....+.++.+ .|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5667999999999999999999998763 2255788899999999999999999998 3444555543 24
Q ss_pred HHHHHHHHHH
Q psy6712 178 IRILRDIEQY 187 (210)
Q Consensus 178 ~~~~~~~~~~ 187 (210)
..+...+.+.
T Consensus 132 ~Rfas~va~r 141 (278)
T PF13871_consen 132 RRFASTVARR 141 (278)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 151
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.65 E-value=8.9e-05 Score=54.32 Aligned_cols=96 Identities=25% Similarity=0.374 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHHhcC----ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec--CccccCCCCC--CcEEEEecCC
Q psy6712 76 LPPATQVDWLTEKMREAN----FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD--VWARGIDVQQ--VSLVINYDLP 147 (210)
Q Consensus 76 ~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~g~d~~~--~~~vi~~~~p 147 (210)
++.....+.+.+.+++.. +.+..- +..++...++.|+.++-.+|+++. .+.+|+|+|+ +..||...+|
T Consensus 16 f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glP 91 (167)
T PF13307_consen 16 FPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLP 91 (167)
T ss_dssp ESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES--
T ss_pred eCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCC
Confidence 334444555555555432 333332 356788999999999999999998 9999999995 7788888877
Q ss_pred C----C--------------------------hhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 148 N----N--------------------------RELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 148 ~----s--------------------------~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
. + .....|.+||+-|...+--+++++++
T Consensus 92 fp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 92 FPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ---TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 2 1 11223778999998765555555554
No 152
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.64 E-value=0.00046 Score=49.15 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCC---cEEEEecC--ccccCCCCC--CcEEEEecCC
Q psy6712 106 KERDGIMKEFRSGTS---RVLITTDV--WARGIDVQQ--VSLVINYDLP 147 (210)
Q Consensus 106 ~~r~~~~~~f~~g~~---~ilv~T~~--~~~g~d~~~--~~~vi~~~~p 147 (210)
.+..+.++.|++..- .||+++.- +++|+|+|+ +..||...+|
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 344788999987543 58888876 999999996 6788887766
No 153
>KOG0391|consensus
Probab=97.64 E-value=0.00096 Score=61.19 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCC--cEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTS--RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
.+.|...|.-.|+...-+.|..+.++|+..++.|+.... ..+++|...+.|+|+..++.||+||-.|++.-=.|.-.|
T Consensus 1289 LDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDr 1368 (1958)
T KOG0391|consen 1289 LDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDR 1368 (1958)
T ss_pred HHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHH
Confidence 566667777778888889999999999999999986542 467899999999999999999999999998777777677
Q ss_pred hcCCCCc--eeEEEEeccC
Q psy6712 160 SGRFGRK--GVAISFVKSD 176 (210)
Q Consensus 160 ~gR~g~~--g~~~~~~~~~ 176 (210)
..|.|+. =..+-|++..
T Consensus 1369 ChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1369 CHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred HHhhcCccceEEEEeeccc
Confidence 7777664 3455556553
No 154
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.62 E-value=0.00067 Score=48.23 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=37.2
Q ss_pred ecCCCCHhHHHHHHHHHhcCC-CcEEEEecCccccCCCCC--CcEEEEecCC
Q psy6712 99 MHGDMPQKERDGIMKEFRSGT-SRVLITTDVWARGIDVQQ--VSLVINYDLP 147 (210)
Q Consensus 99 ~~~~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~g~d~~~--~~~vi~~~~p 147 (210)
+..+....+...+++.|+... ..||+++.-+.+|+|+|+ +..||...+|
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 333455556788999998754 379999988999999996 5688877766
No 155
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.00073 Score=60.24 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCc-----------EEEEecCCCCh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS-----------LVINYDLPNNR 150 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~-----------~vi~~~~p~s~ 150 (210)
.+.+++.|.+.+++...++..-...+-..+..+-+. --+-|+|+++++|-|+.--. +||- .-.+-
T Consensus 442 SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIg--TERhE 517 (822)
T COG0653 442 SELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIG--TERHE 517 (822)
T ss_pred chhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEe--cccch
Confidence 678889999999999888888654444444443332 24779999999999984222 2232 22333
Q ss_pred hHHH--HhhhhhcCCCCceeEEEEeccCc
Q psy6712 151 ELYI--HRIGRSGRFGRKGVAISFVKSDD 177 (210)
Q Consensus 151 ~~~~--q~~GR~gR~g~~g~~~~~~~~~~ 177 (210)
+..+ |..||+||+|.+|....|++-.+
T Consensus 518 SRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 518 SRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred hhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3333 88899999999888877776543
No 156
>KOG2340|consensus
Probab=97.49 E-value=0.0014 Score=55.50 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=61.9
Q ss_pred HHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC--ccccCCCCCCcEEEEecCCCChhHHHHhh---hhhcCC
Q psy6712 89 MREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV--WARGIDVQQVSLVINYDLPNNRELYIHRI---GRSGRF 163 (210)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~--~~~g~d~~~~~~vi~~~~p~s~~~~~q~~---GR~gR~ 163 (210)
+++..+.-..+|.-.+...-...-+.|..|...+|+-|.= .-+-.++..+..||.|.+|.++.=|..-+ +|+.-.
T Consensus 572 ~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~ 651 (698)
T KOG2340|consen 572 MKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQ 651 (698)
T ss_pred hhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhcc
Confidence 3333444444555555566667778889999999999963 34567888999999999999987776554 554433
Q ss_pred CC----ceeEEEEeccCcHHH
Q psy6712 164 GR----KGVAISFVKSDDIRI 180 (210)
Q Consensus 164 g~----~g~~~~~~~~~~~~~ 180 (210)
|+ ...|.++++.-|.-.
T Consensus 652 gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 652 GNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred CCccccceEEEEEeechhhHH
Confidence 32 356777777755443
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.49 E-value=0.00034 Score=61.86 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=72.1
Q ss_pred HHHHHHHHHhc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC------------
Q psy6712 82 VDWLTEKMREA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP------------ 147 (210)
Q Consensus 82 ~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p------------ 147 (210)
.+.+.+.|.+. +.++..+.+ ..+++.|. ++.+|||+|+.++.-+. ++++.|+..|..
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~E 510 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAE 510 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHH
Confidence 66677776553 334443332 24788896 59999999993222222 467777765543
Q ss_pred CChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHH-----HHhcCccccccCCccccCCCCCCC
Q psy6712 148 NNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIE-----QYYSTQIDEMPMNGKRSLHSYPAR 209 (210)
Q Consensus 148 ~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 209 (210)
.....+.|-.||+||....|.+++.. ..+...++.+. .++..++.+ +...+||||
T Consensus 511 r~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~~l~~~d~~~F~~~EL~~------R~~~~~PPf 570 (665)
T PRK14873 511 DTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQALIRWDPVGHAERELAE------RAEVGFPPA 570 (665)
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHHHHHhCCHHHHHHHHHHH------HHHcCccCc
Confidence 23556678889999988899999886 44445555443 355555555 666688887
No 158
>KOG4439|consensus
Probab=97.47 E-value=0.00091 Score=58.23 Aligned_cols=90 Identities=23% Similarity=0.344 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc--CCCcE-EEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhh
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS--GTSRV-LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 159 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~i-lv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR 159 (210)
..+...+.+.|.....+||.....+|..+++.|+. |..++ |++=.+.+-|+|+...+|+|..|+-|++.---|.+.|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 33446667778899999999999999999999974 43454 4666888899999999999999999999999999999
Q ss_pred hcCCCCceeEEEE
Q psy6712 160 SGRFGRKGVAISF 172 (210)
Q Consensus 160 ~gR~g~~g~~~~~ 172 (210)
..|+|+...+++.
T Consensus 840 IYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 840 IYRMGQKKDVFIH 852 (901)
T ss_pred HHHhcccCceEEE
Confidence 9999997665543
No 159
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.43 E-value=0.00024 Score=55.14 Aligned_cols=46 Identities=33% Similarity=0.524 Sum_probs=41.3
Q ss_pred chHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 13 NLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 13 ~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
..++|+..+.. ..+|.||||+|+..++..+.+.+++++++|+|--|
T Consensus 165 Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 165 KLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred cHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 67788888875 67999999999999999999999999999999754
No 160
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.29 E-value=0.0011 Score=61.08 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHHhcCc--eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCC--CcEEEEecCCC-----
Q psy6712 78 PATQVDWLTEKMREANF--TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ--VSLVINYDLPN----- 148 (210)
Q Consensus 78 ~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~--~~~vi~~~~p~----- 148 (210)
.....+.+.+.|..... ....+.-+++...|.+.++.|++++-.||++|..+.+|+|+|+ +.+||...+|.
T Consensus 761 Sy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~d 840 (928)
T PRK08074 761 SYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQ 840 (928)
T ss_pred CHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCC
Confidence 33446777777764322 1222333444456788999999988899999999999999996 47787766542
Q ss_pred -------------------------ChhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 149 -------------------------NRELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 149 -------------------------s~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
....+.|.+||.-|...+--+++++++
T Consensus 841 p~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 841 PVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred HHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 133445888999998765334555554
No 161
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.28 E-value=0.00091 Score=60.75 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhcCceEEEecC-CCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCC--CcEEEEecCC---------
Q psy6712 80 TQVDWLTEKMREANFTVSSMHG-DMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ--VSLVINYDLP--------- 147 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~-~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~--~~~vi~~~~p--------- 147 (210)
...+.+++.|......+ ...| +++ +.+.+++|++++..||++|..+.+|+|+|. ...+|...+|
T Consensus 658 ~~l~~v~~~l~~~~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~ 733 (820)
T PRK07246 658 KHLLAVSDLLDQWQVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFV 733 (820)
T ss_pred HHHHHHHHHHhhcCCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHH
Confidence 33677777776555555 4444 333 456799999988899999999999999973 4555555544
Q ss_pred ---------------------CChhHHHHhhhhhcCCCCceeEEEEeccC--cHHHHHHHHHHhc
Q psy6712 148 ---------------------NNRELYIHRIGRSGRFGRKGVAISFVKSD--DIRILRDIEQYYS 189 (210)
Q Consensus 148 ---------------------~s~~~~~q~~GR~gR~g~~g~~~~~~~~~--~~~~~~~~~~~~~ 189 (210)
.-...+.|.+||.-|...+--+++++++. ....-+.+.+.+-
T Consensus 734 ~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 734 KKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 12344568889999986543345555543 2233344555444
No 162
>KOG1015|consensus
Probab=97.20 E-value=0.0011 Score=59.75 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=71.5
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCC----cEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCcee
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTS----RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 168 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~----~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~ 168 (210)
|....-+.|..+..+|....+.|+.... -.||+|.+.+.|+|+-.++.||+||..|+++-=.|.+=|+-|.|+...
T Consensus 1188 GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKP 1267 (1567)
T KOG1015|consen 1188 GKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKP 1267 (1567)
T ss_pred CCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCc
Confidence 5567778999999999999999986533 378999999999999999999999999999999999999999999777
Q ss_pred EEEEe
Q psy6712 169 AISFV 173 (210)
Q Consensus 169 ~~~~~ 173 (210)
|+++-
T Consensus 1268 vyiYR 1272 (1567)
T KOG1015|consen 1268 VYIYR 1272 (1567)
T ss_pred eeehh
Confidence 76653
No 163
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0038 Score=55.52 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCchhHHHHHHHHHhcCce-EEEecCCCCHhHHHHHHHHHhcCCC-cEEEEecCccccCCCCC--CcEEEEecCC----
Q psy6712 76 LPPATQVDWLTEKMREANFT-VSSMHGDMPQKERDGIMKEFRSGTS-RVLITTDVWARGIDVQQ--VSLVINYDLP---- 147 (210)
Q Consensus 76 ~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~g~d~~~--~~~vi~~~~p---- 147 (210)
++.....+.+.+.+...... ....+|.. .+...++.|+.+.- -++|+|..+++|+|+|+ ...||...+|
T Consensus 486 F~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p 562 (654)
T COG1199 486 FPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNP 562 (654)
T ss_pred eccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCC
Confidence 33444477777877765542 33444444 34478888876655 89999999999999986 4677776665
Q ss_pred --------------------------CChhHHHHhhhhhcCCCCceeEEEEeccC--cHHHHHHHHHHhcCcc
Q psy6712 148 --------------------------NNRELYIHRIGRSGRFGRKGVAISFVKSD--DIRILRDIEQYYSTQI 192 (210)
Q Consensus 148 --------------------------~s~~~~~q~~GR~gR~g~~g~~~~~~~~~--~~~~~~~~~~~~~~~~ 192 (210)
.......|.+||+-|...+.-++++++.. ....-+.+.+++....
T Consensus 563 ~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~~ 635 (654)
T COG1199 563 DDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPFP 635 (654)
T ss_pred CCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCCc
Confidence 23455669999999976554455555442 2223444455554433
No 164
>KOG0921|consensus
Probab=96.96 E-value=0.0008 Score=60.08 Aligned_cols=81 Identities=19% Similarity=0.440 Sum_probs=65.7
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec------------------CCCChhHHHH
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD------------------LPNNRELYIH 155 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~------------------~p~s~~~~~q 155 (210)
..+...|+-.+..++.++.+....|..+++++|.+...-+.+-++.+|+..+ ...+.....|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 4677889999999999999999899999999999998888887767666432 2256778889
Q ss_pred hhhhhcCCCCceeEEEEecc
Q psy6712 156 RIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 156 ~~GR~gR~g~~g~~~~~~~~ 175 (210)
|.||+||. +.|.|..+++.
T Consensus 755 r~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 755 RKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred hcccCcee-cccccccccHH
Confidence 99999998 77888777764
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.88 E-value=0.0057 Score=54.80 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHhc-CceEEEecCCCCHhHHHHHHHHHh----cCCCcEEEEecCccccCCCCC--CcEEEEecCCC--
Q psy6712 78 PATQVDWLTEKMREA-NFTVSSMHGDMPQKERDGIMKEFR----SGTSRVLITTDVWARGIDVQQ--VSLVINYDLPN-- 148 (210)
Q Consensus 78 ~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~g~d~~~--~~~vi~~~~p~-- 148 (210)
.....+.+.+.|... +.. ...++.. .+...++.|+ .++..||++|..+.+|+|+|+ +++||...+|.
T Consensus 543 Sy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~ 618 (697)
T PRK11747 543 SRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAV 618 (697)
T ss_pred cHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCC
Confidence 334467777777543 333 3445543 4566776666 467789999999999999985 78888776552
Q ss_pred --C--------------------------hhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 149 --N--------------------------RELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 149 --s--------------------------~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
+ ...+.|.+||.-|...+--+++++++
T Consensus 619 p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 619 PDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 1 22344778999888654334555544
No 166
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.18 E-value=0.027 Score=50.71 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhc----CCCcEEEEe--cCccccCCCCC--CcEEEEecCCC-Ch--------------------------
Q psy6712 106 KERDGIMKEFRS----GTSRVLITT--DVWARGIDVQQ--VSLVINYDLPN-NR-------------------------- 150 (210)
Q Consensus 106 ~~r~~~~~~f~~----g~~~ilv~T--~~~~~g~d~~~--~~~vi~~~~p~-s~-------------------------- 150 (210)
.++..+++.|+. ++-.+|+++ ..+++|+|+++ +..||..++|. ++
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 644 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYE 644 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHH
Confidence 577888999964 455699998 88999999996 78899888774 11
Q ss_pred ----hHHHHhhhhhcCCCCceeEEEEeccC--cHHHHHHHHHHhcCcccc
Q psy6712 151 ----ELYIHRIGRSGRFGRKGVAISFVKSD--DIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 151 ----~~~~q~~GR~gR~g~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 194 (210)
....|.+||+-|...+--++++++.. +....+.+.+|+...+..
T Consensus 645 ~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~~~~~~~lp~W~~~~~~~ 694 (705)
T TIGR00604 645 FDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYARSNKRKKLPKWIQDTIQS 694 (705)
T ss_pred HHHHHHHHHHhCccccCcCceEEEEEEehhcCCcchhhhcCHHHHhhccc
Confidence 12338889999986654455565543 223445666777666654
No 167
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.14 E-value=0.059 Score=48.39 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC--cEEEEe--cCC--CChhHHHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV--SLVINY--DLP--NNRELYIH 155 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~--~~vi~~--~~p--~s~~~~~q 155 (210)
++.+++..+....++..+++.-+..+. +.| +++++++-|+.+.-|+++... +-+.-| ... .+..+..|
T Consensus 295 ~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q 368 (824)
T PF02399_consen 295 AEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQ 368 (824)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHH
Confidence 344444444445566666665544422 122 467999999999999988532 333333 222 34556799
Q ss_pred hhhhhcCCCCceeEEEEeccC
Q psy6712 156 RIGRSGRFGRKGVAISFVKSD 176 (210)
Q Consensus 156 ~~GR~gR~g~~g~~~~~~~~~ 176 (210)
++||+-.. .....+++++..
T Consensus 369 ~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 369 MLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred HHHHHHhh-ccCeEEEEEecc
Confidence 99998443 566777777654
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.13 E-value=0.024 Score=50.03 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc----CCCcEEEEecCccccCCC--------C--CCcEEEEe
Q psy6712 79 ATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS----GTSRVLITTDVWARGIDV--------Q--QVSLVINY 144 (210)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~g~d~--------~--~~~~vi~~ 144 (210)
....+.+++.|+..--....+.|+.+ .+...+++|++ |.-.||++|..+.+|+|+ | .+++||+.
T Consensus 480 ~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~ 557 (636)
T TIGR03117 480 FSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIIT 557 (636)
T ss_pred HHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEE
Confidence 34477777777654323445556543 34567888886 468999999999999999 2 48888876
Q ss_pred cCCC-------------------------ChhHHHHhhhhhcCCCCc--eeEEEEecc
Q psy6712 145 DLPN-------------------------NRELYIHRIGRSGRFGRK--GVAISFVKS 175 (210)
Q Consensus 145 ~~p~-------------------------s~~~~~q~~GR~gR~g~~--g~~~~~~~~ 175 (210)
.+|. ....+.|-+||.-|...+ --++.++++
T Consensus 558 kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 558 CAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred eCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 6551 133455788888888654 334444444
No 169
>KOG0701|consensus
Probab=96.07 E-value=0.004 Score=59.37 Aligned_cols=58 Identities=26% Similarity=0.496 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 106 KERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 106 ~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
..+.+++..|...++.+|++|.++.+|+|++.++.++.++.|.....|+|..||+-+.
T Consensus 341 ~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 341 LRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 3467889999999999999999999999999999999999999999999999998554
No 170
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=95.54 E-value=0.12 Score=40.18 Aligned_cols=89 Identities=9% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCC----CcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGT----SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
..+.+.+.. ++.+..++++.+... -.|.++. ..|+|+-+.++||+.+++..+.....-+...+++.||.=
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgR 174 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGR 174 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhh
Confidence 444444444 799999998766544 3344443 789999999999999999999999888888888888864
Q ss_pred hhc-CCCCceeEEEEeccCc
Q psy6712 159 RSG-RFGRKGVAISFVKSDD 177 (210)
Q Consensus 159 R~g-R~g~~g~~~~~~~~~~ 177 (210)
..| |.|-...|=++..+.-
T Consensus 175 wFGYR~gY~dl~Ri~~~~~l 194 (239)
T PF10593_consen 175 WFGYRPGYEDLCRIYMPEEL 194 (239)
T ss_pred cccCCcccccceEEecCHHH
Confidence 455 6666778888887643
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.25 E-value=0.062 Score=48.88 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred HhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHh
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYR 74 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~ 74 (210)
.+.....|+++||..+..=+..+.+++.++..+|+||||++.+......+-.++.
T Consensus 3 ~ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 3 KVYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred hHhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 3445667999999998888888999999999999999999987655544444443
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.19 E-value=0.08 Score=41.71 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=40.8
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHH-HHHhcC----c--cCCCccEEEechhhHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFD-MIRRRV----L--RTRNIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~-~l~~~~----~--~~~~~~~lviDE~~~l~ 61 (210)
+|++|..++++.+.++..+.. .+||+.+|...+-- .|+... . -...+.++|+||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 689999999998865433333 56799999977653 444421 1 24688999999999986
No 173
>KOG1513|consensus
Probab=94.99 E-value=0.046 Score=48.86 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=55.6
Q ss_pred HHHHhcCCCcEEEEecCccccCCCCCCcEE--------EEecCCCChhHHHHhhhhhcCCCC-ceeEEEEecc---CcHH
Q psy6712 112 MKEFRSGTSRVLITTDVWARGIDVQQVSLV--------INYDLPNNRELYIHRIGRSGRFGR-KGVAISFVKS---DDIR 179 (210)
Q Consensus 112 ~~~f~~g~~~ilv~T~~~~~g~d~~~~~~v--------i~~~~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~~---~~~~ 179 (210)
-++|..|+-.|-|.+.+++-|+-++.-..| |-..+|||.+.-+|.+||+.|.++ .+.-++|+-+ .|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 357889999999999999999998765544 457899999999999999999977 3444444432 3555
Q ss_pred HHHHHHH
Q psy6712 180 ILRDIEQ 186 (210)
Q Consensus 180 ~~~~~~~ 186 (210)
+..-+.+
T Consensus 930 FAS~VAK 936 (1300)
T KOG1513|consen 930 FASIVAK 936 (1300)
T ss_pred HHHHHHH
Confidence 5444333
No 174
>KOG3089|consensus
Probab=94.55 E-value=0.063 Score=40.55 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=35.3
Q ss_pred hHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 14 LSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 14 ~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
.++|.+.+.+ ..++-||||+|+..+...+.++++.+.++|+|=
T Consensus 185 ~~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 185 VQAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 3445555554 468889999999999999999999999999884
No 175
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.44 E-value=0.13 Score=46.12 Aligned_cols=60 Identities=23% Similarity=0.398 Sum_probs=48.4
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc-ccCCCCCCcEEEE
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA-RGIDVQQVSLVIN 143 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-~g~d~~~~~~vi~ 143 (210)
.+.+.+...++++..++|+++..++.++++...+|+.+|+|+|.... ..+.+.++.+||.
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 34444555579999999999999999999999999999999997543 3466778887774
No 176
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.35 E-value=0.16 Score=44.76 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccc-cCCCCCCcEEE
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWAR-GIDVQQVSLVI 142 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~-g~d~~~~~~vi 142 (210)
...+.++|...|+.+..+.|.+...+|++++++..+|+++++|+|.++-. .+++.+.-+||
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 55667778878999999999999999999999999999999999987643 56666666665
No 177
>PRK09401 reverse gyrase; Reviewed
Probab=94.14 E-value=0.36 Score=45.97 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCC-ccEEEe
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRN-IKMLVL 54 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~-~~~lvi 54 (210)
.|++|..++|+. +.....+.+ ..+|||||..- -+++. ..+++.+ ++++|+
T Consensus 354 ~gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a-RGIDiP~~IryVI~ 405 (1176)
T PRK09401 354 LGINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV-RGIDLPERIRYAIF 405 (1176)
T ss_pred CCCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee-ecCCCCcceeEEEE
Confidence 478999999999 455688876 47999997421 12233 3467777 788886
No 178
>KOG1016|consensus
Probab=93.54 E-value=0.18 Score=45.22 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=66.9
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCC---CcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGT---SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
.-.-+.|..+..+|++.+.+|+..- .-++++|.....|+++-..+.++.||.-|++.--.|.+-|+-|-|+...|++
T Consensus 763 sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 763 SYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred ceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeE
Confidence 3445778888999999999997532 2367889999999999999999999999999999999999999999777766
Q ss_pred Eec
Q psy6712 172 FVK 174 (210)
Q Consensus 172 ~~~ 174 (210)
+--
T Consensus 843 YRl 845 (1387)
T KOG1016|consen 843 YRL 845 (1387)
T ss_pred Eee
Confidence 653
No 179
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.35 E-value=0.26 Score=43.83 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=46.5
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccc-cCCCCCCcEEEE
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWAR-GIDVQQVSLVIN 143 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~-g~d~~~~~~vi~ 143 (210)
.+.+...++++..++|+++..++...++...+|+.+|+|+|...-. .+.+.++.+||.
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 3344445899999999999999999999999999999999975443 456677777763
No 180
>KOG1001|consensus
Probab=93.17 E-value=0.012 Score=52.29 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCC-c-EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTS-R-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
..+.-.|...++....+.|.|+...|.+.+..|..+.. . .+++..+...|+++..+.+|+..|+.|++..--|.+-|+
T Consensus 553 ~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 553 ALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRA 632 (674)
T ss_pred HHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHH
Confidence 33444444567788889999999999999999985433 3 446778889999999999999999999999999999999
Q ss_pred cCCCCceeEEE
Q psy6712 161 GRFGRKGVAIS 171 (210)
Q Consensus 161 gR~g~~g~~~~ 171 (210)
.|.|+...+.+
T Consensus 633 hrigq~k~v~v 643 (674)
T KOG1001|consen 633 HRIGQTKPVKV 643 (674)
T ss_pred HHhcccceeee
Confidence 99998655443
No 181
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.13 E-value=0.17 Score=46.61 Aligned_cols=77 Identities=22% Similarity=0.458 Sum_probs=49.1
Q ss_pred HHHHHHHHHh----cC-ceEEE-ecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc-ccCC-CC--CCcEEEEecC-----
Q psy6712 82 VDWLTEKMRE----AN-FTVSS-MHGDMPQKERDGIMKEFRSGTSRVLITTDVWA-RGID-VQ--QVSLVINYDL----- 146 (210)
Q Consensus 82 ~~~l~~~l~~----~~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-~g~d-~~--~~~~vi~~~~----- 146 (210)
+.+..+.|.. .+ ..+.. +|+.|+.+++++.+++|.+|+++|||+|+.+- ...+ +. ..++|+.=|.
T Consensus 138 v~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 138 VRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHh
Confidence 4444444433 23 44444 99999999999999999999999999997542 2222 22 3556654442
Q ss_pred -CCChhHHHHhhh
Q psy6712 147 -PNNRELYIHRIG 158 (210)
Q Consensus 147 -p~s~~~~~q~~G 158 (210)
..|++..+...|
T Consensus 218 askNvDriL~LlG 230 (1187)
T COG1110 218 ASKNVDRLLRLLG 230 (1187)
T ss_pred ccccHHHHHHHcC
Confidence 245555554444
No 182
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.73 E-value=0.5 Score=42.46 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=49.0
Q ss_pred HHHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec
Q psy6712 82 VDWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD 145 (210)
Q Consensus 82 ~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~ 145 (210)
+..+.+.|++ .+..+..+||+++..+|.+.+.+...|+.+|+|+|..... ..+.++.+||.-+
T Consensus 203 ~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 203 TPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 5666666654 3678999999999999999999999999999999974432 4566777777543
No 183
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.01 E-value=0.56 Score=40.62 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=45.8
Q ss_pred HHHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~ 143 (210)
+..+.+.|++ .+..+..+||+++..+|.+.+.+..+|+.+|+|+|..... ..+.++.+||.
T Consensus 38 ~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 38 TPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 3444444433 2567899999999999999999999999999999975432 34667777774
No 184
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.98 E-value=0.26 Score=43.69 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=31.1
Q ss_pred cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
...+||+|++..-+...+..+.--+....++||||||++.+
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 35789999999877765544322356689999999999964
No 185
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.78 E-value=0.15 Score=37.33 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=28.5
Q ss_pred HHhcCCCcEEEEChHHHHHHHHhcCcc--CCCccEEEechhhHHhcc
Q psy6712 19 RKLDYGQHVVSGTPGRVFDMIRRRVLR--TRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 19 ~~l~~~~~Ili~Tp~~l~~~l~~~~~~--~~~~~~lviDE~~~l~~~ 63 (210)
+......||+|++-.-+++-...+.+. ..+-..+||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 455567899999977666543333221 134468999999998753
No 186
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=91.71 E-value=0.71 Score=42.24 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=37.4
Q ss_pred EEecCccccCCCCC----------------------C----------cEEEEecCCCChhHHHH--hhhhhcCCCCceeE
Q psy6712 124 ITTDVWARGIDVQQ----------------------V----------SLVINYDLPNNRELYIH--RIGRSGRFGRKGVA 169 (210)
Q Consensus 124 v~T~~~~~g~d~~~----------------------~----------~~vi~~~~p~s~~~~~q--~~GR~gR~g~~g~~ 169 (210)
++|.....|+|+|. + ++||.|++..+...-+| |.||.|| .+.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r---~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLR---PLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCC---CcEE
Confidence 66777778999887 4 89999998888888888 5555555 4677
Q ss_pred EEEecc
Q psy6712 170 ISFVKS 175 (210)
Q Consensus 170 ~~~~~~ 175 (210)
++++-.
T Consensus 508 yfL~y~ 513 (814)
T TIGR00596 508 YFLYYG 513 (814)
T ss_pred EEEEEC
Confidence 777754
No 187
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=91.42 E-value=0.21 Score=39.55 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=33.9
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh---cCccCCCccEEEechhhHHh
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR---RVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~---~~~~~~~~~~lviDE~~~l~ 61 (210)
.++..+.|+..............+++|+|.+.+...... ..+.-.+.+.+|+||+|.+-
T Consensus 86 ~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 86 LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 345555555523333333345679999999887710000 11112348899999999984
No 188
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=91.14 E-value=0.28 Score=35.68 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=30.6
Q ss_pred cCCCcEEEEChHHHHHHHHhcC-----------ccCCCccEEEechhhHHhccc
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRV-----------LRTRNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~-----------~~~~~~~~lviDE~~~l~~~~ 64 (210)
....++++.|...+........ ......+++|+||||+.....
T Consensus 109 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 109 NNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp BSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH
T ss_pred cccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH
Confidence 3467899999999888765421 233467899999999887544
No 189
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.47 E-value=1.5 Score=39.42 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=47.7
Q ss_pred HHHHHHHHHhc-C-ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEe
Q psy6712 82 VDWLTEKMREA-N-FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINY 144 (210)
Q Consensus 82 ~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~ 144 (210)
+..+.+.|++. + ..+..+|+++++.+|.+.+.+..+|+.+|+|+|..+.. .-+++..+||..
T Consensus 201 t~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvd 264 (665)
T PRK14873 201 VDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIW 264 (665)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEE
Confidence 56666666543 3 57999999999999999999999999999999976533 344566677654
No 190
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=89.91 E-value=0.35 Score=38.68 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhc
Q psy6712 18 LRKLDYGQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 18 ~~~l~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~ 62 (210)
.+.....+||||++-.-+++-..++. ..+ .-..+||||||.+.+
T Consensus 205 ~r~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 205 SRKAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred HHHHhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 34445678999999877665443322 233 467999999999975
No 191
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=89.91 E-value=0.35 Score=38.68 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhc
Q psy6712 18 LRKLDYGQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 18 ~~~l~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~ 62 (210)
.+.....+||||++-.-+++-..++. ..+ .-..+||||||.+.+
T Consensus 205 ~r~~~~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 205 SRKAIEFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred HHHHhhcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 34445678999999877665443322 233 467999999999975
No 192
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.83 E-value=1.3 Score=41.37 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=48.1
Q ss_pred HHHHHHHHH----hcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc-cccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMR----EANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW-ARGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~~g~d~~~~~~vi~ 143 (210)
+.+..+.++ ..++++..+++..+..++.++++.++.|+.+|+|+|..+ ...+.+.++.++|.
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 444444443 346788999999999999999999999999999999743 34567778888774
No 193
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=88.61 E-value=0.71 Score=42.66 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=30.6
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 17 DLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 17 ~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
..+.....+||||+.=.-+...+.....-+...+++||||||++.+
T Consensus 409 ~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 409 RAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred HHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 3344456889999986655554433222234557999999999975
No 194
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=87.79 E-value=1.3 Score=36.36 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=15.1
Q ss_pred CCCccEEEechhhHHhc
Q psy6712 46 TRNIKMLVLDEADEMLN 62 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~ 62 (210)
....+++|+||||++.+
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 46789999999999987
No 195
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=87.47 E-value=0.95 Score=32.25 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=20.9
Q ss_pred EEEEChHHHHHHHHhcCccCCCccEEEechhhHH
Q psy6712 27 VVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60 (210)
Q Consensus 27 Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l 60 (210)
|=+.|-..+...+.+ .....+.+++|+||+|..
T Consensus 75 i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 75 IDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp EEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred ccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 445555555555555 445689999999999975
No 196
>KOG1133|consensus
Probab=87.26 E-value=4.3 Score=36.32 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=53.2
Q ss_pred HHHHHHHHh----cCCCcEEEEe--cCccccCCCCC--CcEEEEecCCCC------------------------hhHH--
Q psy6712 108 RDGIMKEFR----SGTSRVLITT--DVWARGIDVQQ--VSLVINYDLPNN------------------------RELY-- 153 (210)
Q Consensus 108 r~~~~~~f~----~g~~~ilv~T--~~~~~g~d~~~--~~~vi~~~~p~s------------------------~~~~-- 153 (210)
-..+++.|. .|.-.+|++. ..+++|+|+.+ +..|+..++|.. ..-|
T Consensus 672 ~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEn 751 (821)
T KOG1133|consen 672 VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYEN 751 (821)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555554 4554566444 68899999986 778888887721 1111
Q ss_pred ------HHhhhhhcCCCCceeEEEEeccCcH-HHHHHHHHHhcC
Q psy6712 154 ------IHRIGRSGRFGRKGVAISFVKSDDI-RILRDIEQYYST 190 (210)
Q Consensus 154 ------~q~~GR~gR~g~~g~~~~~~~~~~~-~~~~~~~~~~~~ 190 (210)
=|.+|||-|.-++=.++.+++..-. ...+++.+|+..
T Consensus 752 lCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p~~RKLp~WI~~ 795 (821)
T KOG1133|consen 752 LCMKAVNQSIGRAIRHRKDYASIYLLDKRYARPLSRKLPKWIRK 795 (821)
T ss_pred HHHHHHHHHHHHHHhhhccceeEEEehhhhcCchhhhccHHHHh
Confidence 1788999998776667777765433 455577777743
No 197
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=86.64 E-value=1.3 Score=27.31 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=37.9
Q ss_pred CCceEEEEEcCcchHHHHHHhc---C-CCcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD---Y-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~---~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
.|+++..++|+.+.++....+. . ..+|||+|. .....+++..++++|+-+.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD------ILGEGIDLPDASHVIFYDP 60 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC------GGTTSSTSTTESEEEESSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec------ccccccccccccccccccc
Confidence 3789999999998777665543 3 569999993 2334578888998887655
No 198
>KOG0339|consensus
Probab=85.72 E-value=6.5 Score=34.03 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHHHHHHH-HhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec------CccccCCCCCCcEEEE
Q psy6712 82 VDWLTEKM-REANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD------VWARGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~g~d~~~~~~vi~ 143 (210)
+...++.| +..|+++.++||++|..++..-++ ....++|||. .-..++|+..+++++.
T Consensus 312 i~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 312 IFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred HHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 45556666 667999999999999988775555 3568999996 2234778888887763
No 199
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=84.69 E-value=5.2 Score=37.88 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=50.4
Q ss_pred HHHHHHHHHh----cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-CccccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMRE----ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-VWARGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~g~d~~~~~~vi~ 143 (210)
+++..+.|++ ..+++..+..-.+.+++.++++..++|+++|+|+|. .+..++-+-+.-++|.
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 5555555544 467888899999999999999999999999999996 5566777778887774
No 200
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=84.52 E-value=2.1 Score=39.12 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC--Cc-----------eeEEEEeccCcHHHHHHHH
Q psy6712 119 TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG--RK-----------GVAISFVKSDDIRILRDIE 185 (210)
Q Consensus 119 ~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g--~~-----------g~~~~~~~~~~~~~~~~~~ 185 (210)
-.+.+.+-.++-+|.|-|+|=.++-.....|..+=.|.+||..|.. .. ..-.++++..+..+++.+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 3578899999999999999999999998999999999999998862 11 2234566777888887776
Q ss_pred HHhc
Q psy6712 186 QYYS 189 (210)
Q Consensus 186 ~~~~ 189 (210)
+-+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 5443
No 201
>PRK10689 transcription-repair coupling factor; Provisional
Probab=83.68 E-value=3.3 Score=39.63 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHHHHHHh----cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc-cccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMRE----ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW-ARGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~~g~d~~~~~~vi~ 143 (210)
+..+.+.+.+ .++++..+++..+..++.++++...+|..+|+|+|..+ ...+.+.++.++|.
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 4545444443 35788899999999999999999999999999999643 33456667777764
No 202
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=83.52 E-value=1.2 Score=33.56 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=23.3
Q ss_pred HhcCCCcEEEEChHHHHHHHHhcCccCC--CccEEEechhhHHhc
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRRRVLRTR--NIKMLVLDEADEMLN 62 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~~~~~~~--~~~~lviDE~~~l~~ 62 (210)
.+.+.++|+++|+..... ..+... .++++|||||-.+.+
T Consensus 166 ~~l~~~~vi~~T~~~~~~----~~~~~~~~~~d~vIvDEAsq~~e 206 (236)
T PF13086_consen 166 FILKEADVIFTTLSSAAS----PFLSNFKEKFDVVIVDEASQITE 206 (236)
T ss_dssp HHHHT-SEEEEETCGGG-----CCGTT-----SEEEETTGGGS-H
T ss_pred hhcccccccccccccchh----hHhhhhcccCCEEEEeCCCCcch
Confidence 344578999999986522 222212 789999999987653
No 203
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=82.82 E-value=1.9 Score=38.94 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=40.2
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI 142 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi 142 (210)
|.++..+|+++++.+|.+.+.+.++|+.+|+|+|..+.- .-+++.-+||
T Consensus 270 g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLII 318 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLII 318 (730)
T ss_pred CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEE
Confidence 689999999999999999999999999999999975422 2344555555
No 204
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=82.71 E-value=2.6 Score=35.83 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCCccE-EEechhhHHhccchHHHHHHHHhhCCCchhHHHHHHHHHhcCceEEEecC
Q psy6712 46 TRNIKM-LVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHG 101 (210)
Q Consensus 46 ~~~~~~-lviDE~~~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 101 (210)
+.+=++ ++|||||.+++.....-+++ ++.+.+..+++|+.+.++.-
T Consensus 252 ~dkPklVfFfDEAHLLF~da~kall~~----------ieqvvrLIRSKGVGv~fvTQ 298 (502)
T PF05872_consen 252 LDKPKLVFFFDEAHLLFNDAPKALLDK----------IEQVVRLIRSKGVGVYFVTQ 298 (502)
T ss_pred CCCceEEEEEechhhhhcCCCHHHHHH----------HHHHHHHhhccCceEEEEeC
Confidence 444454 66999999997654332222 46666777777777777554
No 205
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=82.56 E-value=2.1 Score=40.10 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 19 RKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 19 ~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
+.-.+..||||+-=.-+...+..+.--+...+++||||||++.+
T Consensus 426 r~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 426 KNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred HHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 33346789999976555444422222346679999999999974
No 206
>KOG0391|consensus
Probab=81.17 E-value=3.1 Score=39.62 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=41.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCC---CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhcc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYG---QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~---~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~ 63 (210)
|.++..++|........+.-+.. +||.|++-..+..-+.. +.-+..+|+|+||||.+-++
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf 752 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF 752 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch
Confidence 57888899988776666665543 48888876654442221 23356789999999999654
No 207
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=80.50 E-value=6.9 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=33.7
Q ss_pred CceEEEEEcCcchHHHHHHhc---C-CCcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLD---Y-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~---~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
++++..++|+.+..++...+. + ...|+++|. .+ ...+++..++.+|+-+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~-~~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD-----VA-ERGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hCCcChhcCCEEEEeCC
Confidence 577899999888776554433 3 458888884 22 23456777888876655
No 208
>KOG0952|consensus
Probab=80.06 E-value=0.84 Score=42.37 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh--cCccCCCccEEEechhhHHhcc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR--RVLRTRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~--~~~~~~~~~~lviDE~~~l~~~ 63 (210)
|+++.-+.|....+ .+. ...++++|+||+++....++ .+-.++++..+|+||.|++.+.
T Consensus 1001 g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 56677777776665 222 23679999999998887773 4455789999999999988753
No 209
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.72 E-value=3 Score=38.50 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=28.2
Q ss_pred cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
....||+|+.=.-+...+..+. .+...+++||||||++.+
T Consensus 411 a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 411 AKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred HHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 4578999987554444443332 256789999999999964
No 210
>KOG0333|consensus
Probab=79.39 E-value=3.3 Score=35.82 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 1 MNVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
+|++|..++||.+.++-. ..+++ ..+|+|||- .....+++.++.++|
T Consensus 540 ~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 540 AGYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNVSLVI 590 (673)
T ss_pred ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCccceee
Confidence 588999999999977654 44455 579999994 223457888999887
No 211
>PRK14701 reverse gyrase; Provisional
Probab=79.09 E-value=5.2 Score=39.80 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=32.9
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++.+..+||+++..++.+.++.+++|+.+|+|+|.-
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 567889999999999999999999999999999974
No 212
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=78.48 E-value=38 Score=30.02 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=36.8
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+.|++.|+++..+|++++..++..++.....|..+++++|.
T Consensus 70 ~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 70 VDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 345566789999999999999999999999999999999885
No 213
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=77.44 E-value=3.3 Score=37.49 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=26.9
Q ss_pred HhcCCCcEEEEChHHHHHHHHh-cCccCC--CccEEEechhhHHhc
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRR-RVLRTR--NIKMLVLDEADEMLN 62 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~--~~~~lviDE~~~l~~ 62 (210)
.-....||||+-=.-+..-+.. +..-+. +...+||||||++.+
T Consensus 215 ~~a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 3346789999875544443321 111122 467899999999974
No 214
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=77.30 E-value=2.4 Score=39.51 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC-----CC--c--ee-EEEEeccCcHHHHHHHHHHh
Q psy6712 119 TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF-----GR--K--GV-AISFVKSDDIRILRDIEQYY 188 (210)
Q Consensus 119 ~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~-----g~--~--g~-~~~~~~~~~~~~~~~~~~~~ 188 (210)
..+.+++-.++.+|.|.|++-.+....-..|...-.|.+||..|. |. . .. -.++++..+..+++.+.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 457899999999999999999999898888999999999999886 22 1 12 22334556777777776666
Q ss_pred cCc
Q psy6712 189 STQ 191 (210)
Q Consensus 189 ~~~ 191 (210)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 443
No 215
>KOG0298|consensus
Probab=76.90 E-value=1.7 Score=41.28 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCc-EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCce
Q psy6712 108 RDGIMKEFRSGTSR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 108 r~~~~~~f~~g~~~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g 167 (210)
-...+..|++ ++ .++-+...+.|+|+-++.+|+..+|-.++..-.|.+||+.|.|+.-
T Consensus 1257 ~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1257 FDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred hhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhccccc
Confidence 3445555554 44 4577788999999999999999999999999999999999999853
No 216
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=76.88 E-value=66 Score=30.15 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhcC--ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc-----cccCC-----CCCCcEEEE----
Q psy6712 80 TQVDWLTEKMREAN--FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW-----ARGID-----VQQVSLVIN---- 143 (210)
Q Consensus 80 ~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~g~d-----~~~~~~vi~---- 143 (210)
.|++.+.++....+ +.+..++|+.++.+|+ ++..+..+||+++... .+..+ +.+..+||.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 45666777776666 8999999999998887 4556788999998522 12211 234556653
Q ss_pred -ec--CCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCcccc
Q psy6712 144 -YD--LPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 144 -~~--~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
|+ +-.++.-.+-|..|..|.......+++.+..-..-.+..++..+..+..
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV 259 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee
Confidence 22 2245666666666655554444455555442222222334444444444
No 217
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=76.68 E-value=4.6 Score=35.62 Aligned_cols=41 Identities=15% Similarity=0.461 Sum_probs=37.1
Q ss_pred HHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 87 EKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
+.|+.+|+.+.++++.++.+++..++.++..|.+++|.-++
T Consensus 75 ~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 75 DQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred HHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 55778899999999999999999999999999999886664
No 218
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=74.89 E-value=2.6 Score=39.48 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCcEEEEChHHHHHHHH-hcCccCCCccEEEechhhHHh
Q psy6712 24 GQHVVSGTPGRVFDMIR-RRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~-~~~~~~~~~~~lviDE~~~l~ 61 (210)
..+++|+|-+.+...-. ...+.-...+++|+||||++-
T Consensus 247 ~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 247 TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 35789998876553110 111223478899999999996
No 219
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.20 E-value=2.8 Score=37.97 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=28.4
Q ss_pred HhcCCCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhcc
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~~ 63 (210)
.....+||||+.-.-|++--.++. +++++ ..+||||||.+.+.
T Consensus 191 ~~~~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 191 KMLPFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDNV 235 (705)
T ss_pred HhhhcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHHH
Confidence 334577999998766555333222 33444 68999999999753
No 220
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=73.04 E-value=4.1 Score=36.48 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCCcEEEEChHHHHHHHHhcCcc--CCCccEEEechhhHHhcc
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLR--TRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~--~~~~~~lviDE~~~l~~~ 63 (210)
+.++++|++...+..-...+... +..-..+|+||||++-+.
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPDI 235 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchHH
Confidence 57899999998777644433222 456789999999999753
No 221
>KOG0344|consensus
Probab=71.81 E-value=7.3 Score=34.02 Aligned_cols=51 Identities=14% Similarity=0.319 Sum_probs=39.5
Q ss_pred CceEEEEEcCcchHH---HHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 2 NVQCHACIGGTNLSE---DLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~---~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
+|++.+++|+.+..+ ....++.| ..++||| +++.+| ++++.++++|-++.-
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 688999999976443 44555554 6999998 677777 899999999987753
No 222
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=69.74 E-value=26 Score=33.15 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=45.4
Q ss_pred cCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC----ceeEEEEec
Q psy6712 117 SGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR----KGVAISFVK 174 (210)
Q Consensus 117 ~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~----~g~~~~~~~ 174 (210)
....++||.++++-.|.|-|.++.+. .|-|.-....+|.+.|+.|.-. .|.++.|+.
T Consensus 591 ~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 591 DDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 35678999999999999999887554 4567888889999999999732 466666665
No 223
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=69.18 E-value=4.2 Score=26.49 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCceEEEecC----CCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 83 DWLTEKMREANFTVSSMHG----DMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~----~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.--+++|++.|+.+..+.. +-...-+..+.+.+++|+++++|.|.
T Consensus 20 ~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 20 EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 3446778888988444332 22233344699999999988888774
No 224
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=69.08 E-value=4.9 Score=32.34 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=15.4
Q ss_pred CCccEEEechhhHHhccch
Q psy6712 47 RNIKMLVLDEADEMLNKGF 65 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~~ 65 (210)
-.++++||||+|.++....
T Consensus 144 ~~vrmLIIDE~H~lLaGs~ 162 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSY 162 (302)
T ss_pred cCCcEEEeechHHHhcccH
Confidence 4789999999999986443
No 225
>KOG0331|consensus
Probab=68.86 E-value=8.1 Score=33.53 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred CceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
+.++..++|+.+..+-...| ++ .+.|||||- +. ...+++.+++++|
T Consensus 365 ~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VA-aRGLDi~dV~lVI 414 (519)
T KOG0331|consen 365 GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VA-ARGLDVPDVDLVI 414 (519)
T ss_pred CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----cc-cccCCCccccEEE
Confidence 46789999999977655444 34 579999993 33 3447889999988
No 226
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=68.26 E-value=5.7 Score=37.20 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=40.1
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHH-HHHHHhcC------ccCCCccEEEechhhHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRRRV------LRTRNIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l-~~~l~~~~------~~~~~~~~lviDE~~~l~ 61 (210)
+|++|.++..+.+..+ +.-.-.+||..||...+ .+.|+.+. .-...+.+.|+||+|.++
T Consensus 206 lGLtVg~i~~~~~~~~--Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 206 HGLSVGVILNTMRPEE--RREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred hCCeeeeeCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 5889999877665553 33344889999998542 23333322 224678899999999985
No 227
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=67.15 E-value=19 Score=27.17 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=20.3
Q ss_pred cEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh
Q psy6712 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 26 ~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~ 61 (210)
-++|-.+..+.+.+....-+. .++++.||||+-+-
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred ceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 344555555555554432221 27899999998553
No 228
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=65.77 E-value=16 Score=35.30 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=34.9
Q ss_pred EEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccc-cC-CCC-CCcEEEE
Q psy6712 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWAR-GI-DVQ-QVSLVIN 143 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~-g~-d~~-~~~~vi~ 143 (210)
+..+||+++..++...++.+.+|..+|+|+|..... .+ .+. .++++|.
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVv 205 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFV 205 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEE
Confidence 346899999999999999999999999999973221 10 112 5667764
No 229
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=65.29 E-value=16 Score=24.74 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=10.6
Q ss_pred cEEEechhhHHh
Q psy6712 50 KMLVLDEADEML 61 (210)
Q Consensus 50 ~~lviDE~~~l~ 61 (210)
.++||||+|.+.
T Consensus 89 ~~lviDe~~~l~ 100 (131)
T PF13401_consen 89 VLLVIDEADHLF 100 (131)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEeChHhcC
Confidence 689999999975
No 230
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=65.14 E-value=18 Score=31.48 Aligned_cols=47 Identities=17% Similarity=0.416 Sum_probs=36.2
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-----Ccccc-CCCCCCcEEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-----VWARG-IDVQQVSLVIN 143 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~g-~d~~~~~~vi~ 143 (210)
++.+..++|+++...+. ++++.| .+|+|+|+ .+.++ +++..+.++|.
T Consensus 128 ~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 128 GLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred CccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 57899999999887776 444446 89999996 44555 78888888874
No 231
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.53 E-value=22 Score=30.51 Aligned_cols=42 Identities=7% Similarity=0.359 Sum_probs=36.7
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+.|...++.+..++++.+..++..++.....++.+++++|.
T Consensus 68 ~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 68 VLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 344566789999999999999999999999999999999996
No 232
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.55 E-value=13 Score=23.73 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
-+++|++.|+.+..++..... .+..+.+.+++|+++++|.|.
T Consensus 22 Ta~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 22 TAKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECC
Confidence 356777788876534433321 224588899999999888875
No 233
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=62.50 E-value=17 Score=32.20 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.1
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+++..++|+.+..+.. ..+.+ ..+|||+| +++. ..+++.+++++|.-+
T Consensus 281 g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V~~VInyd 333 (572)
T PRK04537 281 GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGVKYVYNYD 333 (572)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCCCEEEEcC
Confidence 67899999998876544 33444 57999999 3444 346888999888543
No 234
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=61.90 E-value=14 Score=31.06 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=34.8
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+++..++|+.+.++... .+.+ ..+|||||. .+. ..+++.+++++|.-+
T Consensus 279 g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v~~VI~~d 331 (423)
T PRK04837 279 GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAVTHVFNYD 331 (423)
T ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccccCEEEEeC
Confidence 688999999987665543 3434 579999993 333 447888999877433
No 235
>KOG1132|consensus
Probab=61.32 E-value=8.1 Score=35.52 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=30.1
Q ss_pred HHhcCCCcEEEEChHHHHHHHHhcC--ccCCCccEEEechhhHHhc
Q psy6712 19 RKLDYGQHVVSGTPGRVFDMIRRRV--LRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 19 ~~l~~~~~Ili~Tp~~l~~~l~~~~--~~~~~~~~lviDE~~~l~~ 62 (210)
+.+.+.+|||++--.=|.+-.-++. +++++ ..+||||||.|-+
T Consensus 217 R~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 217 RELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred hhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 5666788999997766666444443 45444 4699999999853
No 236
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=60.36 E-value=74 Score=27.74 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=65.9
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC------ccccCCCCCCcEEEEecCCCCh--hHHHHhhhhhcCCC
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV------WARGIDVQQVSLVINYDLPNNR--ELYIHRIGRSGRFG 164 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~g~d~~~~~~vi~~~~p~s~--~~~~q~~GR~gR~g 164 (210)
.-.+..+.|+.++++|.+.|.. .+|+|+|+- .+--+|+.++.++|+=..-... ..|..-+-...|..
T Consensus 86 ~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 86 EDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 3478899999999999976653 479999953 2334788899988865443332 23444444455554
Q ss_pred CceeEEEEec--cCcHHHHHHHHHHhcCccccccC
Q psy6712 165 RKGVAISFVK--SDDIRILRDIEQYYSTQIDEMPM 197 (210)
Q Consensus 165 ~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
..-..+-+.. .++.+.+.++.+.++++--++.-
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEec
Confidence 4444444443 35788888888888877665543
No 237
>KOG1133|consensus
Probab=59.94 E-value=12 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCcEEEEChHHHHHHHHhcCccCC-CccEEEechhhHHhcc
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTR-NIKMLVLDEADEMLNK 63 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~-~~~~lviDE~~~l~~~ 63 (210)
.+++++---..|+.--.++.+.++ .=..+||||||.++|.
T Consensus 323 ~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidt 363 (821)
T KOG1133|consen 323 QAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDT 363 (821)
T ss_pred cccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHH
Confidence 456666655555544444443332 2347999999999864
No 238
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=59.64 E-value=21 Score=31.15 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=34.5
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+... .+++ ..+|||+|. .+. ..+++.+++++|.
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v~~VI~ 442 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRVRQVII 442 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccCCEEEE
Confidence 678899999988766543 3444 579999994 333 4478899998884
No 239
>KOG0388|consensus
Probab=59.61 E-value=12 Score=33.89 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=42.0
Q ss_pred ceEEEEEcCcchHHHHHHhc---------CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHH
Q psy6712 3 VQCHACIGGTNLSEDLRKLD---------YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVY 73 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~---------~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~ 73 (210)
.+|..+-|+.+.+...+.++ .+.||+|+|-..+. ...+.+.--...+.|+|||+.+-... ......++
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQAIKSSs-S~RWKtLL 719 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQAIKSSS-SSRWKTLL 719 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--chHHHHHhhhhhheehhHHHHhhhhh-hhHHHHHh
Confidence 46777778877776665533 25699998875432 22222222345689999999886433 33334444
Q ss_pred hh
Q psy6712 74 RY 75 (210)
Q Consensus 74 ~~ 75 (210)
.|
T Consensus 720 sF 721 (1185)
T KOG0388|consen 720 SF 721 (1185)
T ss_pred hh
Confidence 43
No 240
>PRK06893 DNA replication initiation factor; Validated
Probab=56.10 E-value=43 Score=25.61 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=13.4
Q ss_pred CCCccEEEechhhHHh
Q psy6712 46 TRNIKMLVLDEADEML 61 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~ 61 (210)
+.+.+++++||+|.+.
T Consensus 89 ~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 89 LEQQDLVCLDDLQAVI 104 (229)
T ss_pred cccCCEEEEeChhhhc
Confidence 4577899999999875
No 241
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=55.84 E-value=27 Score=29.82 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=33.9
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+.. ..+.+ ..+|||||- .+. ..+++.+++++|.
T Consensus 269 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~v~~VI~ 319 (456)
T PRK10590 269 GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEELPHVVN 319 (456)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCcccCCEEEE
Confidence 67899999998865544 44444 579999993 344 3478889998873
No 242
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=55.80 E-value=25 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
..--+++|++ .|+.+..+..+ +.+.+.++.+..++|+++.+|.|.
T Consensus 33 T~gTa~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~ 78 (115)
T cd01422 33 TGTTGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFR 78 (115)
T ss_pred echHHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcC
Confidence 4555677777 78887766211 223457799999999988888875
No 243
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=55.41 E-value=16 Score=31.79 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.7
Q ss_pred CCCccEEEechhhHHhccch
Q psy6712 46 TRNIKMLVLDEADEMLNKGF 65 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~~~~ 65 (210)
-.+.+.+||||+|.|....|
T Consensus 117 ~~ryKVyiIDEvHMLS~~af 136 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF 136 (515)
T ss_pred cccceEEEEecHHhhhHHHH
Confidence 35788999999998875554
No 244
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=54.26 E-value=24 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCceEEEec--CCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 83 DWLTEKMREANFTVSSMH--GDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~--~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
.--+++|++.|+++..+. .+.+......+.+.+++|+++++|.|..
T Consensus 33 ~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 33 EGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred cHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 445566777777665552 2222222366888888999999888753
No 245
>PF15586 Imm47: Immunity protein 47
Probab=53.26 E-value=15 Score=25.12 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=33.1
Q ss_pred CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCC
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 78 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~ 78 (210)
..+|.||||+.|.+......+ +..=.++|++|.+.= .....+.+++..+..
T Consensus 44 ~F~v~VcTP~wL~~~~~~~~~-~~gr~~LIv~~yd~~---~I~~~i~~~i~~c~~ 94 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWKPGI-LWGRHMLIVEEYDYD---EIKKTIERIIESCEG 94 (116)
T ss_pred eEEEEEEcHHHHHHhhcCCcc-eeccceEEEecCCHH---HHHHHHHHHHHHccC
Confidence 468999999998887665442 223357888887521 244556666666643
No 246
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=53.15 E-value=76 Score=24.15 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=36.3
Q ss_pred eEEEEEcCcc--hHHHHHH-------hcCCCcEEEEChHHHHHHHHh----cC-----ccCCCccEEEechhhHHhc
Q psy6712 4 QCHACIGGTN--LSEDLRK-------LDYGQHVVSGTPGRVFDMIRR----RV-----LRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 4 ~~~~~~gg~~--~~~~~~~-------l~~~~~Ili~Tp~~l~~~l~~----~~-----~~~~~~~~lviDE~~~l~~ 62 (210)
+..+++|+.. ....... ...+..|+..|.+.+...+.. +. -.+...++++||++|.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence 3567888764 2222222 223668999988776553322 21 1367899999999998864
No 247
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=52.85 E-value=50 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=23.2
Q ss_pred cEEEEChHHHHHHHHhc---CccC--------CCc-cEEEechhhHHhcc
Q psy6712 26 HVVSGTPGRVFDMIRRR---VLRT--------RNI-KMLVLDEADEMLNK 63 (210)
Q Consensus 26 ~Ili~Tp~~l~~~l~~~---~~~~--------~~~-~~lviDE~~~l~~~ 63 (210)
.||++|-..|...-..+ ...+ .++ .++|+||||...+.
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 58888877666553321 1111 122 37999999999754
No 248
>KOG4439|consensus
Probab=51.74 E-value=4.1 Score=36.54 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=33.0
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHH----HHHhc--CccCC--CccEEEechhhHHhcc
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFD----MIRRR--VLRTR--NIKMLVLDEADEMLNK 63 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~----~l~~~--~~~~~--~~~~lviDE~~~l~~~ 63 (210)
++|.+++|....+-..+.| ..+||+|+|-.-+.. -+..+ ..-+. ....+|+||||.+-+.
T Consensus 411 LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 411 LSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred eEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 4566666665533333333 478999999754332 01111 01122 2345999999988643
No 249
>PRK04296 thymidine kinase; Provisional
Probab=50.54 E-value=76 Score=23.47 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCccEEEechhhHHhccchHHHHHHHHhhCCCchhHHHHHHHHHhcCceEEEe
Q psy6712 47 RNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSM 99 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~ 99 (210)
.+.+++|+||++.+-. .++..+.+.++..++.+.+.
T Consensus 77 ~~~dvviIDEaq~l~~-----------------~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK-----------------EQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred CCCCEEEEEccccCCH-----------------HHHHHHHHHHHHcCCeEEEE
Confidence 4678999999963311 12334556667777655554
No 250
>PTZ00110 helicase; Provisional
Probab=50.51 E-value=32 Score=30.24 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=34.0
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+.. ..+++ ..+|||||. .+. ..+++.+++++|.
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~v~~VI~ 451 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKDVKYVIN 451 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCcccCCEEEE
Confidence 57889999998866544 44444 468999993 333 4478889998885
No 251
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.76 E-value=1.2e+02 Score=25.95 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=34.5
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-----Ccc-ccCCCCCCcEEEEe
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-----VWA-RGIDVQQVSLVINY 144 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~g~d~~~~~~vi~~ 144 (210)
++.+..++|+.+...+...++ ...+|+|+|. .+. ..+++.++.++|.=
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 678999999998876654443 5679999994 222 34678888888753
No 252
>KOG0347|consensus
Probab=49.38 E-value=28 Score=30.64 Aligned_cols=42 Identities=10% Similarity=0.402 Sum_probs=33.0
Q ss_pred HHHHHHHHH----hcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMR----EANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
+..+.+.|. ..++.+..+.|+|+...++.++.. .-+|+|||.
T Consensus 276 a~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 276 AHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred HHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 555555553 358999999999999999888877 458999996
No 253
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=48.93 E-value=16 Score=34.65 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCceEEEEEc-CcchHHHHHHhcCCCcEEEEChHHH-HHHHHhcC------ccCCCccEEEechhhHHh
Q psy6712 1 MNVQCHACIG-GTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRRRV------LRTRNIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~g-g~~~~~~~~~l~~~~~Ili~Tp~~l-~~~l~~~~------~~~~~~~~lviDE~~~l~ 61 (210)
+|++|.++.. +.+.. .+.-.-.+||..+|...+ .+.|+.+. .-...+.+.|+||+|.++
T Consensus 237 LGLsvg~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 237 HGLSVDCIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred hCCceeecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 5788887765 33333 333344789999998543 23333332 224568899999999985
No 254
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.88 E-value=34 Score=30.72 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=32.8
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+.+..++|+.+..+.. ..+.+ ..+|||+| +++.++ +++.++.++|.
T Consensus 269 g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~arG-IDip~V~~VI~ 319 (629)
T PRK11634 269 GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAARG-LDVERISLVVN 319 (629)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhcC-CCcccCCEEEE
Confidence 57889999998866543 34444 57999999 344443 67778887774
No 255
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=48.86 E-value=58 Score=29.12 Aligned_cols=42 Identities=10% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+.|+..++.+..+++..+.+++..++.....|+.+++++|.
T Consensus 82 v~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 82 VDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred HHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 345666789999999999999999999999999999998884
No 256
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=48.12 E-value=23 Score=33.51 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=29.6
Q ss_pred hHHHHHHhcCC-CcEEEEChHHHHHHHHhc-C-ccCCCccEEEechhhHH
Q psy6712 14 LSEDLRKLDYG-QHVVSGTPGRVFDMIRRR-V-LRTRNIKMLVLDEADEM 60 (210)
Q Consensus 14 ~~~~~~~l~~~-~~Ili~Tp~~l~~~l~~~-~-~~~~~~~~lviDE~~~l 60 (210)
.++..+.+..+ -.|+|+|-.++....... . ..-.+=-.+|+||||+-
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 33333444434 379999999988877653 1 11222336889999975
No 257
>PTZ00424 helicase 45; Provisional
Probab=46.59 E-value=39 Score=28.04 Aligned_cols=48 Identities=8% Similarity=0.174 Sum_probs=34.1
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEec
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLD 55 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviD 55 (210)
++++..++|+.+..+... .+++ ..+|||+|. .+. ..+++.+++++|.-
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~-~GiDip~v~~VI~~ 342 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA-RGIDVQQVSLVINY 342 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc-CCcCcccCCEEEEE
Confidence 567899999988766543 3444 579999993 333 44788899988853
No 258
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=44.28 E-value=49 Score=29.16 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=46.8
Q ss_pred CCceEEEEEcCcchHH---HHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhh
Q psy6712 1 MNVQCHACIGGTNLSE---DLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY 75 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~---~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~ 75 (210)
+||+|..++++.+--+ -++.|+.| +|||||- .+| +..+++-.+.++.|=+||.= ||.+.-..++..
T Consensus 469 ~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLL-REGLDiPEVsLVAIlDADKe---GFLRse~SLIQt 538 (663)
T COG0556 469 LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGLDLPEVSLVAILDADKE---GFLRSERSLIQT 538 (663)
T ss_pred cCceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhh-hccCCCcceeEEEEeecCcc---ccccccchHHHH
Confidence 5899999999987433 44667665 7999993 444 45578999999999888853 555444444433
No 259
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=44.05 E-value=47 Score=21.11 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred HHHHHHhcC---CCcEEEEChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 15 SEDLRKLDY---GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 15 ~~~~~~l~~---~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
++.+.+|+. .|||+..-|+. ...+....+..+.++.-++||.-
T Consensus 15 e~~inELk~dG~ePDivL~G~ef-~e~~~~~~l~~~~lkvy~i~ELg 60 (85)
T PF08967_consen 15 EEKINELKEDGFEPDIVLVGPEF-YEFLSEEVLEVSGLKVYVIEELG 60 (85)
T ss_dssp HHHHHHHHHTT----EEEE-HHH-HHHHHH---EETTEEEEE-GGGT
T ss_pred HHHHHHHHhcCCCCCEEEEcHHH-HHHHHHHHHHhhCceEEEHHhcC
Confidence 345566654 58999999986 44555566778899999999863
No 260
>KOG0341|consensus
Probab=43.93 E-value=29 Score=29.22 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=32.2
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
|+-++.++||.+..+-.. .++. .-||||+|- ..++.+++.++.++|
T Consensus 445 GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------VASKGLDFp~iqHVI 494 (610)
T KOG0341|consen 445 GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------VASKGLDFPDIQHVI 494 (610)
T ss_pred cceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------chhccCCCccchhhc
Confidence 677899999998766443 3443 469999994 334566777777655
No 261
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=43.92 E-value=2.1e+02 Score=24.59 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=34.5
Q ss_pred EEEEEcCcch--HHHHHHh-------cCCCcEEEEChHHHHHHHHh------cCc-----cCCCccEEEechhhHHhc
Q psy6712 5 CHACIGGTNL--SEDLRKL-------DYGQHVVSGTPGRVFDMIRR------RVL-----RTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 5 ~~~~~gg~~~--~~~~~~l-------~~~~~Ili~Tp~~l~~~l~~------~~~-----~~~~~~~lviDE~~~l~~ 62 (210)
-.+++|+... ......+ ..+..++..|++.+...+.. +.+ .+.+.+++++||+|.+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 4577887552 2222222 23567888888776554332 111 246788999999997753
No 262
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=43.05 E-value=35 Score=23.42 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=37.4
Q ss_pred ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCC------CcEEEEec
Q psy6712 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ------VSLVINYD 145 (210)
Q Consensus 94 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~------~~~vi~~~ 145 (210)
+.+....|.-...-..++++...+|++.+.|-|.--.-++|++. -.+||.||
T Consensus 49 l~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 49 LTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred EEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 45555555544445578899999999999999987666777642 34888887
No 263
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=42.90 E-value=36 Score=26.33 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=14.3
Q ss_pred eEEEecCCCCHhHHHHHHHHHh
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
.+..=+.+|+.++-.+.+..+-
T Consensus 171 ~~~VG~~~m~~~~l~eNi~a~l 192 (229)
T CHL00129 171 HVLFGKSNFTEEDLLENLQAIY 192 (229)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3334445688888877777763
No 264
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=42.73 E-value=82 Score=30.57 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHhcCceEEEecCCCCHhHHHHHHHHHhc--CCCcEEEEec
Q psy6712 89 MREANFTVSSMHGDMPQKERDGIMKEFRS--GTSRVLITTD 127 (210)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~T~ 127 (210)
|...++.+..+.++++..++.+++..+.. |++++|++|.
T Consensus 520 L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 520 LLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred HHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 44568999999999999999999998876 8999999996
No 265
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=41.94 E-value=1.5e+02 Score=22.20 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=36.1
Q ss_pred CceEEEEEcCcchH----------------HHHHHhcCCCc-EEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc
Q psy6712 2 NVQCHACIGGTNLS----------------EDLRKLDYGQH-VVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 2 ~i~~~~~~gg~~~~----------------~~~~~l~~~~~-Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~ 64 (210)
.+..++++||.+.+ .....+...++ ++|+.+..... .. ... .-+|.|+.-.. |
T Consensus 4 ~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~~-~~-----~~g-~~vv~D~~~~~---G 73 (192)
T COG0746 4 PMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGR-YA-----EFG-LPVVPDELPGF---G 73 (192)
T ss_pred CceEEEecCCccccccccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchhh-hh-----ccC-CceeecCCCCC---C
Confidence 45678888887763 34455555443 77777665332 11 111 24677766432 5
Q ss_pred hHHHHHHHHhhCC
Q psy6712 65 FKEQIYDVYRYLP 77 (210)
Q Consensus 65 ~~~~~~~i~~~~~ 77 (210)
...-+..-+...+
T Consensus 74 PL~Gi~~al~~~~ 86 (192)
T COG0746 74 PLAGILAALRHFG 86 (192)
T ss_pred CHHHHHHHHHhCC
Confidence 5555555555443
No 266
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=41.62 E-value=38 Score=22.69 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc-CCCcEEEEecC
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS-GTSRVLITTDV 128 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~ 128 (210)
.--+++|++.|+++..+... +.....++.+.+++ |+++++|.|..
T Consensus 32 ~gTa~~L~~~Gi~~~~v~~~-~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 32 GGTSRVLADAGIPVRAVSKR-HEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred cHHHHHHHHcCCceEEEEec-CCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 44567777788877665432 11123668888899 99998888753
No 267
>KOG0335|consensus
Probab=41.50 E-value=49 Score=28.58 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=35.5
Q ss_pred CCceEEEEEcCcchHHHHHHhc---C-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD---Y-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~---~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
.++++..++|....+++.+.+. . ..+++|+|. +. ...++.++++++|.
T Consensus 360 ~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~-----Va-aRGlDi~~V~hVIn 411 (482)
T KOG0335|consen 360 NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN-----VA-ARGLDIPNVKHVIN 411 (482)
T ss_pred CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh-----hh-hcCCCCCCCceeEE
Confidence 3677888999988777666654 3 579999993 33 34578899999884
No 268
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=41.41 E-value=66 Score=29.57 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++++...++..|+.+.++.|+++.++++.... .+|+++|..
T Consensus 114 ae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 114 AEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 44445555556899999999999887765542 689999976
No 269
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.01 E-value=55 Score=28.09 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=34.4
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEec
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLD 55 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviD 55 (210)
|+++..++|+.+.++.. ..+++ ..+|||+|. .+. ..+++.+++++|.-
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~-~GIDi~~v~~VI~~ 410 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG-RGIHIDGISHVINF 410 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCCcccCCCEEEEe
Confidence 67889999998876654 44444 579999993 333 34688899988853
No 270
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=40.85 E-value=61 Score=30.19 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=34.2
Q ss_pred CceEEEEEcCcchHHHHHHhcC----CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY----GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~----~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
++.+..++|+.+.++|.+.+.. ...|||+|. +.. ..+++.++++||
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE-rsLtIp~V~~VI 288 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE-TSLTIEGIRLVV 288 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH-hcccccCceEEE
Confidence 5778999999999888877753 258999995 333 346778888665
No 271
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=40.79 E-value=51 Score=30.68 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=34.0
Q ss_pred CceEEEEEcCcchHHHHHHhcC----CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY----GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~----~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
++.+..++|+.+.++|.+.+.. ...|||+|. +.. ..+++.++++||
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAE-rgItIp~V~~VI 285 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAE-TSLTIEGIRVVI 285 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHh-hcccccCceEEE
Confidence 5789999999999888877753 258999994 333 345677887655
No 272
>KOG1001|consensus
Probab=40.69 E-value=21 Score=32.23 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=25.1
Q ss_pred cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~ 64 (210)
.+++||+++|++.+.. ..+..-..-.+|+||+|.+-+..
T Consensus 232 l~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 232 LNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred hcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcc
Confidence 3477899999986553 11111223358999999886543
No 273
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=40.23 E-value=73 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=34.0
Q ss_pred CceEEEEEcCcc---hHHHHHHhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTN---LSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~---~~~~~~~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+.+...-...+ ..+.++.+. +++|+||+++..+.+.+..-.-...+.+++++|-
T Consensus 31 gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 31 GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHCCCCEEEECCC
Confidence 455444444423 333444443 5899999999888887665333345778888874
No 274
>KOG0989|consensus
Probab=39.82 E-value=26 Score=28.49 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=15.3
Q ss_pred CCCccEEEechhhHHhccc
Q psy6712 46 TRNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~~~ 64 (210)
.+.++.+|+||||.|....
T Consensus 127 ~~~fKiiIlDEcdsmtsda 145 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDA 145 (346)
T ss_pred CCcceEEEEechhhhhHHH
Confidence 4567999999999997543
No 275
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=39.81 E-value=58 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHHHHHHHhc-CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREA-NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
..--+++|++. |+.+..+.++ +..-+.++.+.+++|+++.+|.|.
T Consensus 38 T~gTa~~L~~~~Gi~v~~vi~~-~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 38 TGTTGGLIQEATGLDVTRLLSG-PLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred eChHHHHHHhccCCeeEEEEcC-CCCCchhHHHHHHcCceeEEEEec
Confidence 34556778888 8887665332 112346789999999988888874
No 276
>PRK08084 DNA replication initiation factor; Provisional
Probab=39.53 E-value=95 Score=23.85 Aligned_cols=15 Identities=7% Similarity=0.383 Sum_probs=11.2
Q ss_pred CCccEEEechhhHHh
Q psy6712 47 RNIKMLVLDEADEML 61 (210)
Q Consensus 47 ~~~~~lviDE~~~l~ 61 (210)
.+.++++|||+|.+.
T Consensus 96 ~~~dlliiDdi~~~~ 110 (235)
T PRK08084 96 EQLSLVCIDNIECIA 110 (235)
T ss_pred hhCCEEEEeChhhhc
Confidence 345788899998775
No 277
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=38.73 E-value=35 Score=26.35 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=14.5
Q ss_pred eEEEecCCCCHhHHHHHHHHH
Q psy6712 95 TVSSMHGDMPQKERDGIMKEF 115 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f 115 (210)
.+..=+-+|++++-.+.+..|
T Consensus 170 ~~~VG~~~m~~e~i~eNi~a~ 190 (227)
T TIGR01169 170 HASIGKVSFDSEKLKENLEAL 190 (227)
T ss_pred EEEEecCCCCHHHHHHHHHHH
Confidence 333444568888888888777
No 278
>KOG0991|consensus
Probab=38.23 E-value=64 Score=25.40 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=13.6
Q ss_pred CCccEEEechhhHHhc
Q psy6712 47 RNIKMLVLDEADEMLN 62 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~ 62 (210)
-..+.+|+||||.|.+
T Consensus 112 grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA 127 (333)
T ss_pred CceeEEEeeccchhhh
Confidence 4677899999999974
No 279
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=37.42 E-value=2.5e+02 Score=23.65 Aligned_cols=93 Identities=13% Similarity=0.252 Sum_probs=51.9
Q ss_pred HhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec------CccccCCCCCCcEEEEec----CCCChhHHHHhhhh
Q psy6712 90 REANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD------VWARGIDVQQVSLVINYD----LPNNRELYIHRIGR 159 (210)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~g~d~~~~~~vi~~~----~p~s~~~~~q~~GR 159 (210)
...++.+..++|+.+...+...+ .+..+|+|+|. .....+++.+++++|.=+ .+......+.++..
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHH
Confidence 34578999999998877665433 34678999996 122456777888887532 22333333344332
Q ss_pred hcCCCCceeEEEEeccCcHHHHHHHHHHh
Q psy6712 160 SGRFGRKGVAISFVKSDDIRILRDIEQYY 188 (210)
Q Consensus 160 ~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 188 (210)
..+. ....++|........+..+.+.+
T Consensus 174 ~~~~--~~q~~~~SAT~~~~~~~~~~~~~ 200 (434)
T PRK11192 174 ETRW--RKQTLLFSATLEGDAVQDFAERL 200 (434)
T ss_pred hCcc--ccEEEEEEeecCHHHHHHHHHHH
Confidence 2221 12334444444444455555544
No 280
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=36.03 E-value=34 Score=26.45 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=25.0
Q ss_pred CCCcEEEEChHHHHHHHHhc-------Cc-----------cCCCccEEEechhhHHhc
Q psy6712 23 YGQHVVSGTPGRVFDMIRRR-------VL-----------RTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~-------~~-----------~~~~~~~lviDE~~~l~~ 62 (210)
..--|+++||+.++++...+ .. -+.+...-|+||+|..+.
T Consensus 129 ~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 129 RSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 44569999999988864432 10 012333467888888764
No 281
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=35.61 E-value=1.8e+02 Score=26.51 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS 139 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~ 139 (210)
++++...+...|+.+.++.|+++.++|+... ..+|+++|.. +-|+|.-.-+
T Consensus 161 ae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~ 211 (656)
T PRK12898 161 AELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDR 211 (656)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhcccc
Confidence 3444455555699999999999887666432 4589998853 5566654433
No 282
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=35.48 E-value=70 Score=20.36 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGI 133 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~ 133 (210)
.+.+.|++.|+.+..-|..++..... .+..+++|+|..+...+
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~-------~~~aDiiVtt~~l~~~~ 48 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSE-------LSGADIIIASTHIAGEI 48 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccC-------CCCCCEEEECccchhhh
Confidence 35577888899888888886543111 12458888886655544
No 283
>KOG0336|consensus
Probab=34.68 E-value=35 Score=28.94 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=31.2
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
||++..++|+.....+.. .++. .+.|||+| ++. +..+++.++-+++
T Consensus 489 gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT-----Dla-SRGlDv~DiTHV~ 538 (629)
T KOG0336|consen 489 GISSQSLHGNREQSDREMALEDFKSGEVRILVAT-----DLA-SRGLDVPDITHVY 538 (629)
T ss_pred ccchhhccCChhhhhHHHHHHhhhcCceEEEEEe-----chh-hcCCCchhcceee
Confidence 688889999987655544 4444 47999998 333 3446667776665
No 284
>KOG0327|consensus
Probab=34.58 E-value=50 Score=27.56 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=49.2
Q ss_pred HHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCcc
Q psy6712 113 KEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQI 192 (210)
Q Consensus 113 ~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (210)
.-+......+..|+.-...+.+...+.-+.++-...++..+..++.|. +.+..+.-..++++.++..-..++..+..-+
T Consensus 116 ~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if 194 (397)
T KOG0327|consen 116 ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIF 194 (397)
T ss_pred hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHH
Confidence 333444455555555444444443333333333445566666666554 5555666666676666666666666666666
Q ss_pred ccccCCccccC
Q psy6712 193 DEMPMNGKRSL 203 (210)
Q Consensus 193 ~~~~~~~~~~~ 203 (210)
..+|...+..+
T Consensus 195 ~~lp~~vQv~l 205 (397)
T KOG0327|consen 195 QELPSDVQVVL 205 (397)
T ss_pred HHcCcchhhee
Confidence 66666554443
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=33.94 E-value=1.7e+02 Score=25.07 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=35.6
Q ss_pred eEEEEEcCcchHH--HHHH----h-cCCCcEEEEChHHHHHHHH----hcCc-----cCCCccEEEechhhHHhc
Q psy6712 4 QCHACIGGTNLSE--DLRK----L-DYGQHVVSGTPGRVFDMIR----RRVL-----RTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 4 ~~~~~~gg~~~~~--~~~~----l-~~~~~Ili~Tp~~l~~~l~----~~~~-----~~~~~~~lviDE~~~l~~ 62 (210)
+-.+++|+...-. .... + ..+..++..|.+.+...+. .+.. .+.+.++++|||+|.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 4567888765322 2222 1 2367888888876544322 2211 256788999999998864
No 286
>PRK05642 DNA replication initiation factor; Validated
Probab=33.77 E-value=57 Score=25.07 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred EEEEEcCcc--hHHHHHHh-----cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhcc-chHHHHHHHH
Q psy6712 5 CHACIGGTN--LSEDLRKL-----DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNK-GFKEQIYDVY 73 (210)
Q Consensus 5 ~~~~~gg~~--~~~~~~~l-----~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~-~~~~~~~~i~ 73 (210)
..+++|... .......+ ..+..+++.+.+.+......-.-.+.+.+++++|++|.+... .+...+..++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHH
Confidence 456777644 32222222 235678887777665432111113556789999999977532 3334444444
No 287
>KOG0701|consensus
Probab=33.66 E-value=13 Score=36.75 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 105 QKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 105 ~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
...|.....+|..+.+..+++|.....|.|+..++.++.++.-.+...+.|..|++.
T Consensus 707 ~~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~ 763 (1606)
T KOG0701|consen 707 GMYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVD 763 (1606)
T ss_pred hhhhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccc
Confidence 336666667777788899999999999999999999999999999999999999873
No 288
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=33.21 E-value=91 Score=29.38 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW 129 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 129 (210)
++++...+...|+.+.++.+++++++|+..+. ++|+.+|...
T Consensus 140 ~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 140 ANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 67777777778999999999999999997776 6899998643
No 289
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=33.02 E-value=1.4e+02 Score=19.55 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
++.+.+..++.+.....++..+++.+++...+.+.
T Consensus 46 ~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 46 VEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 78888888888999999999999999998888873
No 290
>KOG0442|consensus
Probab=32.93 E-value=87 Score=29.09 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=57.4
Q ss_pred cEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh------------------------
Q psy6712 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ------------------------ 81 (210)
Q Consensus 26 ~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~------------------------ 81 (210)
-|.++|+-.|.--+..+.+....+..++++-||.+.+.+-...+..++...++.--
T Consensus 101 Gv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~knk~gfIkAFsd~P~sf~~gf~~l~r~mR~ 180 (892)
T KOG0442|consen 101 GVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSKNKTGFIKAFSDSPESFVSGFSHLERKMRN 180 (892)
T ss_pred CeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHhcCCcceeccccCchhhhccchHHHHHHHH
Confidence 36777776666667778888999999999999999987766666666543322111
Q ss_pred ------------HHHHHHHHHhcCceEEEecCCCCHh
Q psy6712 82 ------------VDWLTEKMREANFTVSSMHGDMPQK 106 (210)
Q Consensus 82 ------------~~~l~~~l~~~~~~~~~~~~~~~~~ 106 (210)
-..+.+.|.....++.-+|-.|+..
T Consensus 181 Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~ 217 (892)
T KOG0442|consen 181 LFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNS 217 (892)
T ss_pred HHhhhheeccchHhHHhhhhccCCCceEEEEeecCcc
Confidence 3445666666678899999888753
No 291
>KOG0330|consensus
Probab=32.89 E-value=61 Score=27.36 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 1 MNVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
+|+.+.-++|..+...-...+ ++ .++||+|| ++- +..++...++++|
T Consensus 323 lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T-----DVa-SRGLDip~Vd~VV 373 (476)
T KOG0330|consen 323 LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT-----DVA-SRGLDIPHVDVVV 373 (476)
T ss_pred cCcceecccchhhHHHHHHHHHHHhccCCcEEEec-----chh-cccCCCCCceEEE
Confidence 478888999998877655444 33 57999999 333 3446788888877
No 292
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=32.88 E-value=90 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
++++...+...|+.+.++.++|+.++|++... .+|+++|.
T Consensus 139 ~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 139 AEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 45555666667999999999999998887743 68999986
No 293
>KOG1803|consensus
Probab=32.43 E-value=64 Score=28.74 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=27.1
Q ss_pred HhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
++-.+.+|+++|-+.-...+.. -+.++++|||||-...+
T Consensus 334 eii~n~~VVfaTl~ga~~~~~~----~~~fD~vIIDEaaQamE 372 (649)
T KOG1803|consen 334 EIISNSRVVFATLGGALDRLLR----KRTFDLVIIDEAAQAME 372 (649)
T ss_pred HhhcccceEEEeccchhhhhhc----ccCCCEEEEehhhhhcc
Confidence 3334779999998665542222 26788999999987764
No 294
>PHA03371 circ protein; Provisional
Probab=32.17 E-value=51 Score=25.35 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=28.4
Q ss_pred ccccCCCCCCcEE-EEecCC-------------CChhHHHHhhhhhcCCCCceeEEEEec
Q psy6712 129 WARGIDVQQVSLV-INYDLP-------------NNRELYIHRIGRSGRFGRKGVAISFVK 174 (210)
Q Consensus 129 ~~~g~d~~~~~~v-i~~~~p-------------~s~~~~~q~~GR~gR~g~~g~~~~~~~ 174 (210)
.++-+|+|.=+-+ |..|.+ .+-..|.|.+|||--.|..-+.+++..
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~ 89 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLS 89 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEc
Confidence 4566777765555 533333 356677899999977765444444443
No 295
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.80 E-value=1.5e+02 Score=19.22 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccC-CCCC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGI-DVQQ 137 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~-d~~~ 137 (210)
+..+.+.+.++|+.+-..+...+.- +... .+.+++++|..+...+ ++|.
T Consensus 20 ~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~ 69 (94)
T PRK10310 20 AEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPL 69 (94)
T ss_pred HHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCE
Confidence 3566677888899888887554321 1111 4568888887665554 3443
No 296
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=31.71 E-value=1.2e+02 Score=27.29 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=39.0
Q ss_pred eEEEEEcCcc--hHHHHHHhc-------CCCcEEEEChHHHHHHHHh----cC-----ccCCCccEEEechhhHHhccc-
Q psy6712 4 QCHACIGGTN--LSEDLRKLD-------YGQHVVSGTPGRVFDMIRR----RV-----LRTRNIKMLVLDEADEMLNKG- 64 (210)
Q Consensus 4 ~~~~~~gg~~--~~~~~~~l~-------~~~~Ili~Tp~~l~~~l~~----~~-----~~~~~~~~lviDE~~~l~~~~- 64 (210)
+..+++|+.. .......+. .+..++..|.+.+..-+.. +. -.+.++++|+|||++.+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 3467888654 332222221 2567888888765533221 11 124578899999999886432
Q ss_pred hHHHHHHHH
Q psy6712 65 FKEQIYDVY 73 (210)
Q Consensus 65 ~~~~~~~i~ 73 (210)
....+..++
T Consensus 395 tqeeLF~l~ 403 (617)
T PRK14086 395 TQEEFFHTF 403 (617)
T ss_pred HHHHHHHHH
Confidence 233344444
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.59 E-value=3.2e+02 Score=23.06 Aligned_cols=106 Identities=8% Similarity=0.108 Sum_probs=61.3
Q ss_pred CceEEEEEcCcc---hHHHHHHhcC--CCcEEE-EChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhh
Q psy6712 2 NVQCHACIGGTN---LSEDLRKLDY--GQHVVS-GTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY 75 (210)
Q Consensus 2 ~i~~~~~~gg~~---~~~~~~~l~~--~~~Ili-~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~ 75 (210)
|-+|++++.+.- ..+|++...+ +..+.+ .++..+...+.. +++.+++++|++.+..... ..+
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~--~~l------ 273 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDF--MKL------ 273 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCH--HHH------
Confidence 456777777753 3334555444 444443 345555544432 4678999999998764211 112
Q ss_pred CCCchhHHHHHHHHHhc---CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe
Q psy6712 76 LPPATQVDWLTEKMREA---NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT 126 (210)
Q Consensus 76 ~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 126 (210)
..+.+.+... .....++.+.+....-.+++..|..-..+-+|-|
T Consensus 274 -------~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 274 -------AEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred -------HHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 2222333222 1356777777778888888899876555555555
No 298
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=68 Score=24.75 Aligned_cols=96 Identities=7% Similarity=0.044 Sum_probs=51.9
Q ss_pred EEecCCCCHhHHHHHHHHHhcC---CCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEe
Q psy6712 97 SSMHGDMPQKERDGIMKEFRSG---TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFV 173 (210)
Q Consensus 97 ~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~ 173 (210)
.-+=|+|+++....-++.+... +..=+-.-..+...+|+|++.....-+-..++..++-...+....+ ...++++.
T Consensus 4 iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~-GAd~i~l~ 82 (230)
T COG1794 4 IGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERA-GADFIVLP 82 (230)
T ss_pred eEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 3456899998887777776542 1111122233334455555433333232334555554444443332 34577777
Q ss_pred ccCcHHHHHHHHHHhcCccc
Q psy6712 174 KSDDIRILRDIEQYYSTQID 193 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~ 193 (210)
.+--...+..+++..+.++-
T Consensus 83 ~NT~H~~~d~iq~~~~iPll 102 (230)
T COG1794 83 TNTMHKVADDIQKAVGIPLL 102 (230)
T ss_pred CCcHHHHHHHHHHhcCCCee
Confidence 76666777788877766553
No 299
>KOG0351|consensus
Probab=31.28 E-value=94 Score=29.50 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcC--CCcEEEEec-Ccc--c-----cCCCCC----CcEEEE-----
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSG--TSRVLITTD-VWA--R-----GIDVQQ----VSLVIN----- 143 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~-~~~--~-----g~d~~~----~~~vi~----- 143 (210)
+.....|...++.+.+++++++..+|..+++.+.+| .++++-.|. .+. . ..++.. .-+||.
T Consensus 318 ~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 318 QDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred HHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 333445567799999999999999999999999999 888886664 111 1 112222 122221
Q ss_pred --ecCCCChhHHHHhhhhhcCCCCce-eEEEEeccCcHHHHHHHHHHhcCccccc
Q psy6712 144 --YDLPNNRELYIHRIGRSGRFGRKG-VAISFVKSDDIRILRDIEQYYSTQIDEM 195 (210)
Q Consensus 144 --~~~p~s~~~~~q~~GR~gR~g~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
|+ .+...-..+.|-. |....+ ..+.+........-..+.+.++....++
T Consensus 398 SqWg--HdFRp~Yk~l~~l-~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~ 449 (941)
T KOG0351|consen 398 SQWG--HDFRPSYKRLGLL-RIRFPGVPFIALTATATERVREDVIRSLGLRNPEL 449 (941)
T ss_pred hhhc--ccccHHHHHHHHH-HhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcce
Confidence 11 1111112233322 222344 3444555566677777888887776653
No 300
>KOG0338|consensus
Probab=31.16 E-value=43 Score=29.33 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCceEEEEEcCcchHHHHHHhc----CCCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
||+++.-++|..+..+-+..+. ..+|+||+| ++-. ..+++..+..+|
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT-----DvAs-RGLDI~gV~tVI 499 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT-----DVAS-RGLDIEGVQTVI 499 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEe-----chhh-ccCCccceeEEE
Confidence 5888999999998887666654 378999999 3333 345666777666
No 301
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=31.09 E-value=72 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=37.3
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHH
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l 60 (210)
|++++.++|+.+..+.. ..++. ..+|+||| ..+. ..+++.+++++|+-+++..
T Consensus 466 gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 466 GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCCcEEEEeCcccc
Confidence 67888888987654332 44443 57999998 3343 4578899999998887754
No 302
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=30.50 E-value=1.1e+02 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++++....+..|+.+.++.|+++..+|.... ..+|+++|..
T Consensus 140 ~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 140 SQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 3444444455689999999999998886554 4689999963
No 303
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.35 E-value=1.1e+02 Score=20.23 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+-.+++|++.|+++..+..-- .....+.+.+++|+++++|.+.
T Consensus 32 T~gT~~~l~~~gi~~~~v~~~~--~~~~~i~~~i~~~~id~vIn~~ 75 (110)
T cd01424 32 TEGTAKYLQEAGIPVEVVNKVS--EGRPNIVDLIKNGEIQLVINTP 75 (110)
T ss_pred chHHHHHHHHcCCeEEEEeecC--CCchhHHHHHHcCCeEEEEECC
Confidence 4556677888888755543321 2336688888899988888874
No 304
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.93 E-value=38 Score=31.25 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.4
Q ss_pred CCccEEEechhhHHhccc
Q psy6712 47 RNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~ 64 (210)
...+++||||+|.|....
T Consensus 118 gr~KVIIIDEah~LT~~A 135 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA 135 (830)
T ss_pred CCceEEEEeChhhCCHHH
Confidence 467899999999887544
No 305
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=28.81 E-value=54 Score=26.50 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.2
Q ss_pred cCCCccEEEechhhHHh
Q psy6712 45 RTRNIKMLVLDEADEML 61 (210)
Q Consensus 45 ~~~~~~~lviDE~~~l~ 61 (210)
++..=+.++|||.|++.
T Consensus 100 ~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 100 NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred cCCcCCeEEEehhhhcC
Confidence 36677899999999985
No 306
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=28.65 E-value=1.5e+02 Score=22.02 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..|.+.|++.++....+.|-.+...-..+........+++.|.+++.+
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~ 174 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACR 174 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccC
Confidence 567788888999999999998888877777766666678887776543
No 307
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.64 E-value=2.6e+02 Score=21.06 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT 126 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 126 (210)
.+.+.+.+++.|+.+..+.++.+.+.....++.+.....+-+|.+
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~ 62 (259)
T cd01542 18 VKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILL 62 (259)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 345556667778888777776666666777777777777755554
No 308
>PF13173 AAA_14: AAA domain
Probab=28.52 E-value=30 Score=23.59 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.8
Q ss_pred CccEEEechhhHHh
Q psy6712 48 NIKMLVLDEADEML 61 (210)
Q Consensus 48 ~~~~lviDE~~~l~ 61 (210)
.-.+++|||+|.+-
T Consensus 61 ~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP 74 (128)
T ss_pred CCcEEEEehhhhhc
Confidence 55789999999884
No 309
>PHA02653 RNA helicase NPH-II; Provisional
Probab=27.98 E-value=97 Score=28.22 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=32.9
Q ss_pred CceEEEEEcCcchHHH-HHHh-cC-CCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 2 NVQCHACIGGTNLSED-LRKL-DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~-~~~l-~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
++++..++|+.+..+| .+.+ ++ ...|||+|. +.. ..+++.++++||
T Consensus 421 ~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IAE-RGIDIp~V~~VI 469 (675)
T PHA02653 421 IYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YLE-SSVTIRNATHVY 469 (675)
T ss_pred CceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hhh-ccccccCeeEEE
Confidence 5789999999887644 3555 33 468999994 333 356788888776
No 310
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=27.90 E-value=1.5e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCceEEEecCCC-CHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDM-PQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~-~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++.+.+.+...+.-...+.|.| |.--|.-+....++|-++++|+|..
T Consensus 44 ~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 44 SEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred HHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 4556666655565567788998 5566666666668899999999964
No 311
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=27.89 E-value=31 Score=25.63 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=11.7
Q ss_pred CccEEEechhhHHhcc
Q psy6712 48 NIKMLVLDEADEMLNK 63 (210)
Q Consensus 48 ~~~~lviDE~~~l~~~ 63 (210)
.=.++|+||||.....
T Consensus 79 ~~~liviDEa~~~~~~ 94 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPS 94 (193)
T ss_dssp TT-EEEETTGGGTSB-
T ss_pred CCcEEEEECChhhcCC
Confidence 4568999999988753
No 312
>PRK08727 hypothetical protein; Validated
Probab=27.43 E-value=48 Score=25.46 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=24.4
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
.+..+++.+.+.+...+..-.-.+.+..++|+||+|.+..
T Consensus 68 ~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 68 AGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAG 107 (233)
T ss_pred cCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccC
Confidence 3556666665554433322112356778999999997764
No 313
>PRK10628 LigB family dioxygenase; Provisional
Probab=27.00 E-value=2.7e+02 Score=21.88 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=21.1
Q ss_pred CCCCcE-EEEecCCCChh-HHHHhhhhhcCCCCceeEEEE
Q psy6712 135 VQQVSL-VINYDLPNNRE-LYIHRIGRSGRFGRKGVAISF 172 (210)
Q Consensus 135 ~~~~~~-vi~~~~p~s~~-~~~q~~GR~gR~g~~g~~~~~ 172 (210)
.|+.++ |++..++.+.. ..--++||+.|.=++..++++
T Consensus 106 ~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIi 145 (246)
T PRK10628 106 YPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLV 145 (246)
T ss_pred CCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEE
Confidence 355555 66666655433 344578988776444333333
No 314
>KOG0389|consensus
Probab=26.81 E-value=1.6e+02 Score=27.48 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHHHHHHHHhc-----CceEEEecCCCCHhHHHHHHHHHhcC--CCcEEEEecCcccc
Q psy6712 82 VDWLTEKMREA-----NFTVSSMHGDMPQKERDGIMKEFRSG--TSRVLITTDVWARG 132 (210)
Q Consensus 82 ~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~g 132 (210)
..-+..|+++- .+.+..+||. +.+|++.-..+..+ .++|||+|.-+..+
T Consensus 457 sSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 457 SSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred chhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 34444555442 4688999998 58888888888866 78999999765543
No 315
>PRK07952 DNA replication protein DnaC; Validated
Probab=26.68 E-value=1.5e+02 Score=23.06 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCCcEEEEChHHHHHHHHhc----C-------ccCCCccEEEechhhHHh
Q psy6712 23 YGQHVVSGTPGRVFDMIRRR----V-------LRTRNIKMLVLDEADEML 61 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~----~-------~~~~~~~~lviDE~~~l~ 61 (210)
.+..+++.|...+...+... . -.+..++++||||++...
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 36678877776666544321 0 125688999999998754
No 316
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.37 E-value=43 Score=30.33 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.5
Q ss_pred CCccEEEechhhHHhccc
Q psy6712 47 RNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~ 64 (210)
...+.+||||+|.|....
T Consensus 123 gr~KViIIDEah~Ls~~A 140 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA 140 (700)
T ss_pred CCceEEEEEChHhcCHHH
Confidence 467899999999886544
No 317
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=25.92 E-value=2.3e+02 Score=25.49 Aligned_cols=23 Identities=0% Similarity=-0.091 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCceEEEecCCCC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMP 104 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~ 104 (210)
...+.+.|+++|+++...|.+.+
T Consensus 524 a~kIkk~Lke~GI~veV~~~~Vs 546 (602)
T PRK09548 524 KMKIKKYLDKRGIPIIMDSCAVN 546 (602)
T ss_pred HHHHHHHHHHcCCCeEEEEechH
Confidence 45555666666666555555543
No 318
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=25.90 E-value=61 Score=19.68 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=15.8
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEC
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGT 31 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~T 31 (210)
|+.++.+..|....++.......++.++.+
T Consensus 42 G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~ 71 (75)
T PF13242_consen 42 GIDTILVLTGVYSPEDLEKAEHKPDYVVDD 71 (75)
T ss_dssp TSEEEEESSSSSCCCGHHHSSSTTSEEESS
T ss_pred CCcEEEECCCCCCHHHHhccCCCCCEEECC
Confidence 555555555555554444444455555544
No 319
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.77 E-value=50 Score=28.66 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=13.5
Q ss_pred CCccEEEechhhHHhcc
Q psy6712 47 RNIKMLVLDEADEMLNK 63 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~ 63 (210)
...+.+||||+|.|...
T Consensus 120 g~~KV~IIDEah~Ls~~ 136 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQ 136 (484)
T ss_pred CCCEEEEEechhhcCHH
Confidence 35679999999988643
No 320
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=25.71 E-value=93 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=7.9
Q ss_pred CccEEEechhhHH
Q psy6712 48 NIKMLVLDEADEM 60 (210)
Q Consensus 48 ~~~~lviDE~~~l 60 (210)
.-..|++||||--
T Consensus 196 ~~~~llvDEAhGa 208 (417)
T PF01276_consen 196 HGIPLLVDEAHGA 208 (417)
T ss_dssp TECEEEEE-TT-T
T ss_pred cCCEEEEEccccc
Confidence 3457999999853
No 321
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.55 E-value=1.8e+02 Score=21.48 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWAR 131 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 131 (210)
..|..+|+++++....+.|-.+...-..+...-.+..+++++.+++...
T Consensus 122 T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~~ 170 (205)
T COG1335 122 TDLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATAG 170 (205)
T ss_pred CCHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhccc
Confidence 3477889999999999999999888888777777777788877766543
No 322
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=25.37 E-value=62 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=26.2
Q ss_pred CcEEE---EChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 25 QHVVS---GTPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 25 ~~Ili---~Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
+.|.+ +||..+.+.|....++.+++.++..||=.
T Consensus 30 ~~lalsGGstp~~~y~~L~~~~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 30 FSLALSGGRSPIALLEALAAQPLDWSRIHLFLGDERY 66 (233)
T ss_pred EEEEECCCccHHHHHHHHhhCCCCcceEEEEEecccc
Confidence 34554 36777888777778899999999999953
No 323
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=25.37 E-value=2.7e+02 Score=20.25 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=32.5
Q ss_pred cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC-----c-cccCCCCCCcEEEE
Q psy6712 92 ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV-----W-ARGIDVQQVSLVIN 143 (210)
Q Consensus 92 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~g~d~~~~~~vi~ 143 (210)
.++.+..++|+.+..+.....+ +..+++|+|.. + ..-.++++++++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 5788899999987765543332 56799999952 1 22256677888774
No 324
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=25.27 E-value=65 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred HhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 20 KLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 20 ~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
++-...+++.+|.+. .. +.-..++++|||||-++.+
T Consensus 340 ~il~~a~v~~st~~~--~~-----l~~~~Fd~vIIDEAsQ~~e 375 (637)
T TIGR00376 340 EILAESDVVQSTNSS--AG-----LKGWEFDVAVIDEASQAME 375 (637)
T ss_pred HHHhhCCEEEeccCc--Hh-----hccCCCCEEEEECccccch
Confidence 344567788888652 22 3346788999999966654
No 325
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.08 E-value=51 Score=30.72 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.7
Q ss_pred CCccEEEechhhHHhccc
Q psy6712 47 RNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~ 64 (210)
...+.+||||+|.|....
T Consensus 119 ~~~KV~IIDEad~lt~~a 136 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG 136 (824)
T ss_pred CCceEEEEechhhcCHHH
Confidence 577899999999997543
No 326
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=24.85 E-value=2.1e+02 Score=19.69 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHhcCc---eEEEecCCCCHhHHHHHHHHHhcCCCcEEEE
Q psy6712 85 LTEKMREANF---TVSSMHGDMPQKERDGIMKEFRSGTSRVLIT 125 (210)
Q Consensus 85 l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 125 (210)
-..+|++.|+ ++..+|..-+...-....++++.|.+.++|+
T Consensus 73 s~~wL~~aGl~~~kvl~l~~~~~~~tl~amekAL~sGn~s~Vl~ 116 (119)
T PF03846_consen 73 SRQWLQQAGLPLEKVLQLHPRNPQSTLEAMEKALRSGNYSAVLG 116 (119)
T ss_dssp -HHHHHHTT--CCCEEEE--SSTTHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHcCCChhHeEEeCCCCcccHHHHHHHHHHhCCCeEEEE
Confidence 3456677675 6788888888888899999999999998886
No 327
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=24.82 E-value=2.6e+02 Score=22.30 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=18.0
Q ss_pred CCccEEEechhhHHhccchHHHHHHHHhh
Q psy6712 47 RNIKMLVLDEADEMLNKGFKEQIYDVYRY 75 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~~~~~~~~i~~~ 75 (210)
...+++||||+|.+........+..++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 35789999999988333333444444443
No 328
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=24.79 E-value=97 Score=28.54 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=30.5
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
+.++..++||...++-. +.+++ ..++||+|. .+.. .+++.+++++|.-+
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----~ler-GIDI~~vd~VI~~~ 355 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----ALEL-GVDISGLDAVVIAG 355 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----hHhc-cCCcccccEEEEeC
Confidence 45678889998865533 44444 468999984 3333 35666666666443
No 329
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.64 E-value=2.2e+02 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcC---ceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc
Q psy6712 82 VDWLTEKMREAN---FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW 129 (210)
Q Consensus 82 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 129 (210)
....++.|++.| +.+...|+-++ ....+..++|.+|-++-+++|+.+
T Consensus 280 l~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 280 MIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred HHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 455666776654 67788899988 777777788888888989999876
No 330
>PHA02558 uvsW UvsW helicase; Provisional
Probab=24.63 E-value=1.3e+02 Score=26.25 Aligned_cols=49 Identities=6% Similarity=0.124 Sum_probs=32.5
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEec
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLD 55 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviD 55 (210)
|+++..++|+.+.++-. +.+.+ ...|||+|-+ ++ ...+++.+++.+|+.
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~----~l-~eG~Dip~ld~vIl~ 420 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG----VF-STGISIKNLHHVIFA 420 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc----ee-ccccccccccEEEEe
Confidence 67899999998755432 22233 3468888854 22 344688899999875
No 331
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.53 E-value=52 Score=28.76 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=14.3
Q ss_pred CCccEEEechhhHHhccc
Q psy6712 47 RNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~ 64 (210)
...+.+||||+|.|....
T Consensus 118 ~~~kV~iIDE~~~ls~~a 135 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS 135 (509)
T ss_pred CCcEEEEEEChHhcCHHH
Confidence 367899999999886543
No 332
>KOG0953|consensus
Probab=24.29 E-value=78 Score=28.09 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=21.0
Q ss_pred eEEEEEcCcchHH---HHHHhc---CCCcEEEECh
Q psy6712 4 QCHACIGGTNLSE---DLRKLD---YGQHVVSGTP 32 (210)
Q Consensus 4 ~~~~~~gg~~~~~---~~~~l~---~~~~Ili~Tp 32 (210)
+|+++||+.+... |.+.+. +.+||+|+|-
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsD 417 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASD 417 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeec
Confidence 5999999988543 444443 3689999984
No 333
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=24.23 E-value=2.1e+02 Score=20.28 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..+.+.|++.|+....+.|-.+.-.-.........-.+++.|.++..+
T Consensus 77 t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~a 124 (157)
T cd01012 77 EAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACG 124 (157)
T ss_pred HHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCC
Confidence 457788888899999999988877766655555444578888777653
No 334
>PHA00350 putative assembly protein
Probab=24.12 E-value=76 Score=26.81 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=11.8
Q ss_pred cEEEechhhHHhcc
Q psy6712 50 KMLVLDEADEMLNK 63 (210)
Q Consensus 50 ~~lviDE~~~l~~~ 63 (210)
.++||||||.+...
T Consensus 83 aLIViDEaq~~~p~ 96 (399)
T PHA00350 83 ALYVIDEAQMIFPK 96 (399)
T ss_pred CEEEEECchhhcCC
Confidence 48999999999753
No 335
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=23.94 E-value=3.4e+02 Score=20.90 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc---CCCcEEEEecCccccCCCCCCcEEEEec-CCCChhHHHH
Q psy6712 80 TQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS---GTSRVLITTDVWARGIDVQQVSLVINYD-LPNNRELYIH 155 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ilv~T~~~~~g~d~~~~~~vi~~~-~p~s~~~~~q 155 (210)
..++.+.+.|++.|+.+. .+.+++..+-.+.++.|.+ ...+.+++. .++.|.. +.++-.| .+-+..+.++
T Consensus 32 ~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~~----~~l~~~D~~~v~l~~i~~ 105 (243)
T cd00032 32 VDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGEE----GGIYGTDGDVVPIDEITS 105 (243)
T ss_pred HHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCCC----CEEEEecCcEEEHHHHHH
Confidence 347889999999999875 5777889999999999975 233444443 4566643 6777666 5566777777
Q ss_pred hhh
Q psy6712 156 RIG 158 (210)
Q Consensus 156 ~~G 158 (210)
.+.
T Consensus 106 ~f~ 108 (243)
T cd00032 106 LFN 108 (243)
T ss_pred hhc
Confidence 764
No 336
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=23.92 E-value=2.3e+02 Score=20.54 Aligned_cols=48 Identities=6% Similarity=-0.021 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..|.+.|++.|+....+.|-.+...-........+-.+++.|.+++.+
T Consensus 103 t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 103 TSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred CcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 357778888899999999988877776666555555578888877654
No 337
>KOG1615|consensus
Probab=23.75 E-value=2.6e+02 Score=21.30 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCceEEEecCCC
Q psy6712 82 VDWLTEKMREANFTVSSMHGDM 103 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~ 103 (210)
+..+...|+++|..+..+.|+.
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGF 114 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCCh
Confidence 7889999999999999999995
No 338
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=23.63 E-value=1.3e+02 Score=21.46 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW 129 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 129 (210)
-..+.++|++.++....+.|-.+...-..+.....+-.+++.|.+++.
T Consensus 100 ~t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~ 147 (174)
T PF00857_consen 100 GTDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDAC 147 (174)
T ss_dssp TSSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred cccccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhh
Confidence 345778899999999999998888777776666666667888877654
No 339
>PF12846 AAA_10: AAA-like domain
Probab=23.38 E-value=49 Score=25.84 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=12.8
Q ss_pred CccEEEechhhHHhcc
Q psy6712 48 NIKMLVLDEADEMLNK 63 (210)
Q Consensus 48 ~~~~lviDE~~~l~~~ 63 (210)
.-..+++||+|.++..
T Consensus 220 ~~~~i~iDEa~~~~~~ 235 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSN 235 (304)
T ss_pred ceEEEEeCCccccccc
Confidence 4457899999999865
No 340
>KOG0340|consensus
Probab=23.29 E-value=1.4e+02 Score=25.08 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCceEEEEEcCcchHHHHHHhc----CCCcEEEEChHHHHHHHHhcCccCCCccEEE
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLV 53 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~----~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lv 53 (210)
|.++++.+++-.+.++-...|. +...|||+|- .-. ..+++-.+.++|
T Consensus 277 le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD-----VAs-RGLDIP~V~LVv 327 (442)
T KOG0340|consen 277 LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD-----VAS-RGLDIPTVELVV 327 (442)
T ss_pred hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec-----hhh-cCCCCCceeEEE
Confidence 5788999999999888777775 3679999993 333 446778888777
No 341
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=22.41 E-value=2.3e+02 Score=21.52 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..|.+.|++.|+....+.|-.+...-..+......-.+++.|.+++.+
T Consensus 140 T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 140 TPLDSMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred CCHHHHHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 347888999999999999988877776666555555588888888754
No 342
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=22.38 E-value=62 Score=29.26 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=14.3
Q ss_pred CCccEEEechhhHHhccc
Q psy6712 47 RNIKMLVLDEADEMLNKG 64 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~ 64 (210)
...+.+||||+|.|....
T Consensus 118 g~~KV~IIDEah~Ls~~a 135 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS 135 (647)
T ss_pred CCCEEEEEechHhCCHHH
Confidence 467899999999886533
No 343
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=22.22 E-value=2.2e+02 Score=21.30 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..|.+.|++.|++...+.|-++...-..+...-..-.+++.|.+++.+
T Consensus 131 T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~a 178 (203)
T cd01013 131 SPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIA 178 (203)
T ss_pred CCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccC
Confidence 356677888888888888887776665544443333467777766543
No 344
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=22.08 E-value=1.1e+02 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.1
Q ss_pred CHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 104 PQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 104 ~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
+.++|+..++.+++|.++++|+|+-+-
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHaP 245 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSAP 245 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 368889999999999999999998654
No 345
>PLN02621 nicotinamidase
Probab=21.96 E-value=2.4e+02 Score=20.86 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
.+.+.|++.|++...+.|-.+.-.-.........-.+++.|.+++.+
T Consensus 117 ~L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v~~Da~a 163 (197)
T PLN02621 117 RLEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATA 163 (197)
T ss_pred cHHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEEEeccccC
Confidence 56677788888888888877776666655555555567777766543
No 346
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=21.74 E-value=1.1e+02 Score=25.37 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=11.0
Q ss_pred ccEEEechhhHHh
Q psy6712 49 IKMLVLDEADEML 61 (210)
Q Consensus 49 ~~~lviDE~~~l~ 61 (210)
..++||||+|.+.
T Consensus 139 ~~viviDE~d~l~ 151 (394)
T PRK00411 139 VLIVALDDINYLF 151 (394)
T ss_pred EEEEEECCHhHhh
Confidence 3478999999997
No 347
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=21.56 E-value=1.8e+02 Score=27.13 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCceEEEecCCCC-HhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMP-QKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~-~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+++...+...|+.+..+.|+++ .++|+... ..+|+++|.
T Consensus 136 ~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 136 AEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 45555666667999999999999 77776432 368999984
No 348
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=21.27 E-value=73 Score=23.27 Aligned_cols=17 Identities=12% Similarity=0.448 Sum_probs=13.9
Q ss_pred CCCccEEEechhhHHhc
Q psy6712 46 TRNIKMLVLDEADEMLN 62 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~ 62 (210)
....+++||||+|.+..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 35678999999998864
No 349
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=21.23 E-value=2.8e+02 Score=18.89 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=13.5
Q ss_pred CCCccEEEechhhHHhcc
Q psy6712 46 TRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~~ 63 (210)
....+++|+||++.+.+.
T Consensus 83 ~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 83 RGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCCEEEEEEcHHHHHHH
Confidence 356778999999887653
No 350
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=21.09 E-value=2.5e+02 Score=20.98 Aligned_cols=48 Identities=17% Similarity=-0.019 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
..|...|++.++....+.|-.+.-.-..+......-.++++|.+++.+
T Consensus 131 T~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a 178 (212)
T PRK11609 131 TALDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCR 178 (212)
T ss_pred ccHHHHHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccC
Confidence 456778888899999999988877776666555555578888877543
No 351
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=21.03 E-value=2.9e+02 Score=21.22 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCceEEEecCC-CCHhHHHHHHHHHhcCCCcEEE
Q psy6712 82 VDWLTEKMREANFTVSSMHGD-MPQKERDGIMKEFRSGTSRVLI 124 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~-~~~~~r~~~~~~f~~g~~~ilv 124 (210)
.+.+.++|.+.+-.|+.+.+. .+.+.|+.+++.|....+++++
T Consensus 84 l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlF 127 (222)
T PF01591_consen 84 LEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLF 127 (222)
T ss_dssp HHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 577788888777789999876 5667777788888776666663
No 352
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=21.00 E-value=1.2e+02 Score=19.56 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHh------------HHHHHHHHHhcCCCcEEEEecCcccc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQK------------ERDGIMKEFRSGTSRVLITTDVWARG 132 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~------------~r~~~~~~f~~g~~~ilv~T~~~~~g 132 (210)
+..+.+.|...+..+....|.+... .+.+.+.....+.-.|+++||.-.+|
T Consensus 11 a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 11 AKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp HHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred HHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 4455566654456777777765322 12344444444556799999876666
No 353
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.98 E-value=4.2e+02 Score=20.91 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCC-HhHHHHHHHHHhcCCCcEEEEecCc
Q psy6712 80 TQVDWLTEKMREANFTVSSMHGDMP-QKERDGIMKEFRSGTSRVLITTDVW 129 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~~~~-~~~r~~~~~~f~~g~~~ilv~T~~~ 129 (210)
..+.++++.|.+.|+.+....-=.+ .++..+.++...+. .+++|+|.-+
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGL 70 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGL 70 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCc
Confidence 3478999999999988776654333 33333444444333 8999999644
No 354
>KOG0334|consensus
Probab=20.82 E-value=1.2e+02 Score=28.91 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=35.0
Q ss_pred CceEEEEEcCcchHH---HHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 2 NVQCHACIGGTNLSE---DLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~---~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
|+.|..++||.+... .+..++++ +++||+|.. + ...++++++.++|-+.+
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv-----v-arGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV-----V-ARGLDVKELILVVNYDF 690 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh-----h-hcccccccceEEEEccc
Confidence 677888999988543 45677764 689999853 2 23467778888776654
No 355
>PRK11440 putative hydrolase; Provisional
Probab=20.82 E-value=2.5e+02 Score=20.52 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccc
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWAR 131 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 131 (210)
..|...|++.|+....+.|-.+.-.-..+...-..-.++++|.+++.+-
T Consensus 110 T~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~as 158 (188)
T PRK11440 110 TDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSA 158 (188)
T ss_pred CCHHHHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhcC
Confidence 3567778888999999999888766666555555556788888775543
No 356
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=20.67 E-value=74 Score=16.04 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=7.9
Q ss_pred cCCCcEEEEec
Q psy6712 117 SGTSRVLITTD 127 (210)
Q Consensus 117 ~g~~~ilv~T~ 127 (210)
.|..+|.|+|+
T Consensus 2 ~g~LqI~ISTn 12 (30)
T PF14824_consen 2 RGPLQIAISTN 12 (30)
T ss_dssp -TTEEEEEEES
T ss_pred CCCeEEEEECC
Confidence 56778888885
No 357
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=20.64 E-value=1.9e+02 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred CccEEEechhhHHhccchHHHHHHHHhhCCCchhHHHHHHHHHhcCceEEE
Q psy6712 48 NIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSS 98 (210)
Q Consensus 48 ~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~~~ 98 (210)
+.+++++||++-+- .++..+.+.+...|+.+.+
T Consensus 76 ~~dvI~IDEaQFf~------------------~~i~~l~~~~~~~g~~Vi~ 108 (176)
T PF00265_consen 76 DYDVIGIDEAQFFD------------------EQIVQLVEILANKGIPVIC 108 (176)
T ss_dssp TCSEEEESSGGGST------------------TTHHHHHHHHHHTT-EEEE
T ss_pred CCCEEEEechHhhH------------------HHHHHHHHHHHhCCCeEEE
Confidence 38899999998542 2234455666667766654
No 358
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=20.58 E-value=67 Score=16.44 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=9.9
Q ss_pred EechhhHHhccchHHHH
Q psy6712 53 VLDEADEMLNKGFKEQI 69 (210)
Q Consensus 53 viDE~~~l~~~~~~~~~ 69 (210)
++||++.+++....+-+
T Consensus 8 lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 8 LLDEIDGVLESNAEEFV 24 (33)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 46777777765544333
No 359
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=20.46 E-value=79 Score=22.72 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.0
Q ss_pred CCccEEEechhhHHhc
Q psy6712 47 RNIKMLVLDEADEMLN 62 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~ 62 (210)
...+.+||||||.|..
T Consensus 101 ~~~KviiI~~ad~l~~ 116 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE 116 (162)
T ss_dssp SSSEEEEEETGGGS-H
T ss_pred CCceEEEeehHhhhhH
Confidence 4688999999998864
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=20.45 E-value=1.4e+02 Score=21.95 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.6
Q ss_pred CCCccEEEechhhHHhccchH
Q psy6712 46 TRNIKMLVLDEADEMLNKGFK 66 (210)
Q Consensus 46 ~~~~~~lviDE~~~l~~~~~~ 66 (210)
-...+++|+||+-..++.++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli 115 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYL 115 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCc
Confidence 357899999999888877643
No 361
>PRK06526 transposase; Provisional
Probab=20.35 E-value=71 Score=25.03 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=26.3
Q ss_pred CCCcEEEEChHHHHHHHHhc----C-----ccCCCccEEEechhhHHh
Q psy6712 23 YGQHVVSGTPGRVFDMIRRR----V-----LRTRNIKMLVLDEADEML 61 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~----~-----~~~~~~~~lviDE~~~l~ 61 (210)
.+..+++.|...+...+... . ..+...+++||||++...
T Consensus 125 ~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 125 AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 46778888887766655321 1 135677899999998653
No 362
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.32 E-value=57 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.9
Q ss_pred CCccEEEechhhHHhccch
Q psy6712 47 RNIKMLVLDEADEMLNKGF 65 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~~~~ 65 (210)
...+.+||||+|.|....+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~ 141 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF 141 (618)
T ss_pred CCceEEEEEChhhCCHHHH
Confidence 4678999999998865443
No 363
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=20.25 E-value=2.6e+02 Score=22.35 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred CceEEEEEcCc----chHHHHHHhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 2 NVQCHACIGGT----NLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 2 ~i~~~~~~gg~----~~~~~~~~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
|+.+...-... ...+..+.+. .++|+||++-....+.+..-.-...+..++++|-.
T Consensus 34 ~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 34 GIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQEVAKEYPDTKFIIIDGY 94 (306)
T ss_dssp TEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHHHHTC-TTSEEEEESS-
T ss_pred CceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 34444444443 3444555553 68999999987777766653334567788888743
No 364
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.16 E-value=4.2e+02 Score=21.13 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCceEEEecCC------CCHhHHHHHHHHHh---cCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGD------MPQKERDGIMKEFR---SGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~ilv~T~ 127 (210)
...+.+++.+.|+.-.++.|. |+.++|.++++... .|+..+++.+.
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 455556666777777776664 67888888877654 45666776653
No 365
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.15 E-value=4.2e+02 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHHhc
Q psy6712 17 DLRKLDYGQHVVSGTPGRVFDMIRRR 42 (210)
Q Consensus 17 ~~~~l~~~~~Ili~Tp~~l~~~l~~~ 42 (210)
-++.|++.-.|.+-||.+.+.-+.+.
T Consensus 47 IIkkLK~rdgi~~dTP~~aL~klk~~ 72 (265)
T COG4822 47 IIKKLKERDGIDFDTPIQALNKLKDQ 72 (265)
T ss_pred HHHHHHhhcCcccCCHHHHHHHHHHc
Confidence 45666677789999999988877663
Done!