Query psy6712
Match_columns 210
No_of_seqs 147 out of 1625
Neff 9.8
Searched_HMMs 29240
Date Sat Aug 17 01:06:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.4E-38 1.2E-42 263.0 22.1 200 2-201 157-433 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 4.8E-37 1.6E-41 253.7 22.2 201 2-202 133-409 (410)
3 1s2m_A Putative ATP-dependent 100.0 2.9E-35 9.9E-40 242.2 24.0 202 2-203 117-392 (400)
4 3eiq_A Eukaryotic initiation f 100.0 3.1E-36 1.1E-40 248.8 18.2 201 2-202 136-413 (414)
5 2i4i_A ATP-dependent RNA helic 100.0 8.2E-36 2.8E-40 246.6 18.6 201 2-202 129-409 (417)
6 1hv8_A Putative ATP-dependent 100.0 1.1E-33 3.7E-38 229.8 23.0 195 2-197 102-366 (367)
7 1xti_A Probable ATP-dependent 100.0 9.1E-34 3.1E-38 232.4 22.1 199 2-200 105-382 (391)
8 3i5x_A ATP-dependent RNA helic 100.0 6.2E-34 2.1E-38 244.2 19.4 193 3-195 179-468 (563)
9 3sqw_A ATP-dependent RNA helic 100.0 1E-33 3.6E-38 243.6 19.4 193 3-195 128-417 (579)
10 1fuu_A Yeast initiation factor 100.0 3.3E-35 1.1E-39 241.1 8.6 201 2-203 117-393 (394)
11 3fht_A ATP-dependent RNA helic 100.0 2.1E-32 7.1E-37 225.7 19.1 199 2-203 124-407 (412)
12 2z0m_A 337AA long hypothetical 100.0 2.8E-32 9.7E-37 219.2 17.4 183 2-190 84-336 (337)
13 3pey_A ATP-dependent RNA helic 100.0 9.5E-32 3.3E-36 220.3 20.3 192 3-198 104-380 (395)
14 3oiy_A Reverse gyrase helicase 100.0 7.1E-31 2.4E-35 217.3 15.8 188 1-198 90-387 (414)
15 3fmp_B ATP-dependent RNA helic 100.0 1.9E-32 6.4E-37 230.8 5.8 194 3-199 192-470 (479)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-30 5.1E-35 221.3 14.4 183 1-183 88-350 (523)
17 2v1x_A ATP-dependent DNA helic 100.0 2.2E-30 7.5E-35 222.7 15.5 182 2-183 108-381 (591)
18 3fho_A ATP-dependent RNA helic 100.0 6.5E-31 2.2E-35 223.0 9.4 180 23-202 234-497 (508)
19 4a2p_A RIG-I, retinoic acid in 100.0 4.5E-29 1.5E-33 213.1 9.2 84 93-178 426-510 (556)
20 2ykg_A Probable ATP-dependent 100.0 1.2E-28 4E-33 216.1 10.7 113 82-196 411-540 (696)
21 3tbk_A RIG-I helicase domain; 100.0 3.9E-29 1.3E-33 213.2 6.7 88 95-184 427-515 (555)
22 1fuk_A Eukaryotic initiation f 99.9 3.7E-27 1.3E-31 171.9 12.4 132 72-203 33-164 (165)
23 4ddu_A Reverse gyrase; topoiso 99.9 4.7E-27 1.6E-31 213.6 15.4 179 1-189 147-503 (1104)
24 2hjv_A ATP-dependent RNA helic 99.9 1E-26 3.5E-31 169.2 14.4 126 71-196 37-162 (163)
25 2zj8_A DNA helicase, putative 99.9 1.3E-26 4.3E-31 204.1 16.4 190 2-196 95-405 (720)
26 2rb4_A ATP-dependent RNA helic 99.9 2E-26 6.9E-31 169.5 13.8 131 71-201 36-172 (175)
27 1t5i_A C_terminal domain of A 99.9 1.4E-26 4.7E-31 170.0 12.6 131 71-201 33-164 (172)
28 1wp9_A ATP-dependent RNA helic 99.9 4E-26 1.4E-30 190.8 16.8 97 82-179 374-478 (494)
29 3eaq_A Heat resistant RNA depe 99.9 2.6E-26 9E-31 173.9 14.0 129 71-199 33-161 (212)
30 4a2q_A RIG-I, retinoic acid in 99.9 4E-27 1.4E-31 209.2 10.3 84 93-178 667-751 (797)
31 1tf5_A Preprotein translocase 99.9 4.6E-26 1.6E-30 198.5 16.5 94 82-177 445-546 (844)
32 1gku_B Reverse gyrase, TOP-RG; 99.9 2.5E-26 8.7E-31 208.5 14.4 174 4-190 133-468 (1054)
33 2p6r_A Afuhel308 helicase; pro 99.9 4.8E-26 1.6E-30 199.9 15.5 174 1-177 94-389 (702)
34 2va8_A SSO2462, SKI2-type heli 99.9 5.2E-26 1.8E-30 200.0 15.7 173 2-177 102-409 (715)
35 4gl2_A Interferon-induced heli 99.9 2.9E-26 9.8E-31 201.0 12.5 92 82-175 413-518 (699)
36 2p6n_A ATP-dependent RNA helic 99.9 4.2E-26 1.5E-30 170.0 10.8 130 72-201 57-187 (191)
37 3l9o_A ATP-dependent RNA helic 99.9 6.1E-26 2.1E-30 206.4 13.9 97 96-194 507-613 (1108)
38 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.1E-26 1.8E-30 168.8 9.7 130 72-201 49-178 (185)
39 4a2w_A RIG-I, retinoic acid in 99.9 2E-26 7E-31 207.3 8.9 84 93-178 667-751 (936)
40 1gm5_A RECG; helicase, replica 99.9 1.2E-25 4.1E-30 197.8 12.7 179 1-184 444-705 (780)
41 3i32_A Heat resistant RNA depe 99.9 3.9E-25 1.3E-29 175.2 13.6 128 71-198 30-157 (300)
42 2fsf_A Preprotein translocase 99.9 3.4E-25 1.2E-29 192.8 14.1 95 82-178 454-585 (853)
43 1nkt_A Preprotein translocase 99.9 2E-24 7E-29 188.4 17.4 96 82-179 473-620 (922)
44 3o8b_A HCV NS3 protease/helica 99.9 2.5E-25 8.4E-30 191.7 10.2 173 2-195 282-537 (666)
45 2yjt_D ATP-dependent RNA helic 99.9 6.5E-27 2.2E-31 171.4 0.0 129 70-198 31-159 (170)
46 2xgj_A ATP-dependent RNA helic 99.9 4.4E-24 1.5E-28 192.8 17.1 88 96-183 409-507 (1010)
47 3rc3_A ATP-dependent RNA helic 99.9 7.9E-24 2.7E-28 183.7 16.5 174 2-187 203-455 (677)
48 2eyq_A TRCF, transcription-rep 99.9 1E-23 3.4E-28 192.8 16.6 169 2-176 680-922 (1151)
49 2oca_A DAR protein, ATP-depend 99.9 2.9E-24 9.9E-29 182.1 10.3 92 82-173 360-452 (510)
50 4f92_B U5 small nuclear ribonu 99.9 6.8E-24 2.3E-28 199.2 11.8 90 95-184 1215-1316(1724)
51 1yks_A Genome polyprotein [con 99.9 6.5E-25 2.2E-29 183.0 3.8 110 82-196 190-322 (440)
52 4a4z_A Antiviral helicase SKI2 99.9 7.8E-23 2.7E-27 184.6 14.1 89 95-184 401-502 (997)
53 4f92_B U5 small nuclear ribonu 99.9 3.8E-23 1.3E-27 194.2 11.0 90 95-184 380-481 (1724)
54 2whx_A Serine protease/ntpase/ 99.9 1.7E-22 5.9E-27 174.4 12.8 158 26-190 256-495 (618)
55 2jlq_A Serine protease subunit 99.9 4.4E-22 1.5E-26 166.5 12.6 145 24-175 87-310 (451)
56 2xau_A PRE-mRNA-splicing facto 99.9 1.4E-22 4.9E-27 178.8 9.8 154 23-178 184-445 (773)
57 2wv9_A Flavivirin protease NS2 99.9 2.8E-23 9.6E-28 180.6 4.4 102 82-188 423-548 (673)
58 2z83_A Helicase/nucleoside tri 99.9 6.3E-23 2.2E-27 171.9 5.9 145 26-176 91-313 (459)
59 2d7d_A Uvrabc system protein B 99.9 1.1E-21 3.9E-26 170.6 12.2 119 82-201 458-590 (661)
60 2fwr_A DNA repair protein RAD2 99.9 1.1E-21 3.7E-26 164.9 11.5 82 95-176 370-454 (472)
61 1c4o_A DNA nucleotide excision 99.9 4.3E-21 1.5E-25 167.0 14.3 103 82-185 452-559 (664)
62 2v6i_A RNA helicase; membrane, 99.8 3.9E-20 1.3E-24 153.8 14.5 143 25-174 71-289 (431)
63 3h1t_A Type I site-specific re 99.8 2E-20 6.8E-25 161.3 11.3 83 82-165 452-545 (590)
64 1z63_A Helicase of the SNF2/RA 99.8 2.2E-19 7.6E-24 151.8 12.4 95 82-176 354-453 (500)
65 3mwy_W Chromo domain-containin 99.8 1.6E-18 5.5E-23 154.0 16.2 107 82-188 585-698 (800)
66 3jux_A Protein translocase sub 99.8 9.6E-18 3.3E-22 144.2 18.2 95 82-178 487-589 (822)
67 1z3i_X Similar to RAD54-like; 99.8 2.1E-17 7.3E-22 143.6 17.2 103 82-184 429-538 (644)
68 3dmq_A RNA polymerase-associat 99.7 7.1E-18 2.4E-22 152.3 11.0 114 75-188 509-625 (968)
69 1z5z_A Helicase of the SNF2/RA 99.7 3.3E-18 1.1E-22 133.8 5.7 102 75-176 118-224 (271)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 3.6E-14 1.2E-18 128.3 17.6 68 107-175 637-708 (1038)
71 2ipc_A Preprotein translocase 99.5 1.3E-12 4.4E-17 114.6 16.3 59 1-61 147-215 (997)
72 3fe2_A Probable ATP-dependent 99.4 1.1E-12 3.7E-17 100.7 8.8 99 2-115 130-228 (242)
73 3iuy_A Probable ATP-dependent 99.3 3.7E-12 1.3E-16 96.8 8.0 96 2-111 121-216 (228)
74 1vec_A ATP-dependent RNA helic 99.3 5.8E-11 2E-15 88.5 12.8 99 2-115 100-198 (206)
75 3ly5_A ATP-dependent RNA helic 99.3 1.1E-11 3.9E-16 96.2 8.8 96 2-111 154-250 (262)
76 3ber_A Probable ATP-dependent 99.3 1.9E-11 6.5E-16 94.2 8.9 100 2-116 139-239 (249)
77 1wrb_A DJVLGB; RNA helicase, D 99.3 2.3E-11 7.9E-16 93.8 9.3 104 2-116 128-231 (253)
78 3bor_A Human initiation factor 99.2 7.8E-11 2.7E-15 90.0 11.2 101 2-117 126-227 (237)
79 1q0u_A Bstdead; DEAD protein, 99.2 1.2E-11 4.1E-16 93.4 6.2 100 2-116 104-203 (219)
80 2oxc_A Probable ATP-dependent 99.2 3.9E-11 1.3E-15 91.3 8.5 90 2-106 121-211 (230)
81 2gxq_A Heat resistant RNA depe 99.2 4.9E-11 1.7E-15 89.0 8.3 99 3-116 99-197 (207)
82 1qde_A EIF4A, translation init 99.1 1E-10 3.5E-15 88.4 7.9 99 2-116 110-208 (224)
83 2pl3_A Probable ATP-dependent 99.1 1.8E-10 6.3E-15 87.7 9.3 93 2-109 125-218 (236)
84 1t6n_A Probable ATP-dependent 99.1 2.3E-10 7.7E-15 86.3 8.3 93 2-108 111-205 (220)
85 3fmo_B ATP-dependent RNA helic 99.0 1.6E-10 5.4E-15 91.5 5.3 91 2-109 191-283 (300)
86 3dkp_A Probable ATP-dependent 98.9 2.3E-09 7.8E-14 82.1 6.8 101 2-116 126-232 (245)
87 3b6e_A Interferon-induced heli 98.6 1.2E-08 4.2E-13 76.1 2.4 68 2-69 110-183 (216)
88 3llm_A ATP-dependent RNA helic 98.2 1.4E-06 4.7E-11 66.2 4.7 67 23-107 154-222 (235)
89 2vl7_A XPD; helicase, unknown 97.7 4.5E-05 1.6E-09 64.9 5.4 92 78-175 393-520 (540)
90 1rif_A DAR protein, DNA helica 97.4 4.4E-05 1.5E-09 59.4 1.7 53 4-62 187-239 (282)
91 2fz4_A DNA repair protein RAD2 97.0 0.00052 1.8E-08 52.0 3.5 39 24-65 171-209 (237)
92 3crv_A XPD/RAD3 related DNA he 96.6 0.0019 6.7E-08 55.0 4.5 44 19-62 143-187 (551)
93 4a15_A XPD helicase, ATP-depen 96.5 0.0033 1.1E-07 54.4 5.6 95 77-175 456-583 (620)
94 3hgt_A HDA1 complex subunit 3; 96.2 0.043 1.5E-06 43.4 10.0 90 82-176 138-237 (328)
95 2vl7_A XPD; helicase, unknown 94.9 0.0066 2.3E-07 51.6 1.0 40 22-61 142-188 (540)
96 3crv_A XPD/RAD3 related DNA he 94.2 0.27 9.3E-06 41.7 9.3 81 92-175 413-530 (551)
97 3dmq_A RNA polymerase-associat 93.5 0.0091 3.1E-07 54.3 -1.1 40 24-63 248-288 (968)
98 1gm5_A RECG; helicase, replica 92.2 0.32 1.1E-05 43.2 6.8 58 86-143 438-496 (780)
99 3oiy_A Reverse gyrase helicase 84.9 1.7 5.8E-05 35.0 5.9 62 82-143 77-145 (414)
100 2eyq_A TRCF, transcription-rep 79.2 3.3 0.00011 38.5 6.1 54 90-143 677-731 (1151)
101 4ddu_A Reverse gyrase; topoiso 75.8 4.8 0.00017 37.2 6.1 62 82-143 134-202 (1104)
102 2p6n_A ATP-dependent RNA helic 73.1 7.6 0.00026 27.7 5.6 48 2-55 78-129 (191)
103 4a15_A XPD helicase, ATP-depen 72.9 1.7 6E-05 37.4 2.4 46 18-63 169-219 (620)
104 1oyw_A RECQ helicase, ATP-depe 71.7 9.9 0.00034 31.8 6.7 46 82-127 78-123 (523)
105 2hjv_A ATP-dependent RNA helic 71.7 6.5 0.00022 27.1 4.8 49 2-56 59-111 (163)
106 3eaq_A Heat resistant RNA depe 69.3 5.7 0.0002 28.8 4.2 47 2-54 55-105 (212)
107 2v1x_A ATP-dependent DNA helic 66.5 12 0.0004 32.0 6.2 46 82-127 97-144 (591)
108 2l82_A Designed protein OR32; 64.0 26 0.00089 22.6 5.9 41 82-122 15-55 (162)
109 1fuk_A Eukaryotic initiation f 62.7 11 0.00038 25.9 4.5 49 2-56 54-106 (165)
110 3i32_A Heat resistant RNA depe 58.0 10 0.00036 29.3 4.0 47 2-54 52-102 (300)
111 2db3_A ATP-dependent RNA helic 56.1 16 0.00054 29.6 4.9 47 2-54 324-374 (434)
112 1t6n_A Probable ATP-dependent 54.4 55 0.0019 23.2 7.5 48 93-143 111-164 (220)
113 2i4i_A ATP-dependent RNA helic 54.3 18 0.00063 28.6 5.1 47 2-54 300-350 (417)
114 3fe2_A Probable ATP-dependent 51.1 58 0.002 23.6 7.1 51 89-143 126-182 (242)
115 2xw6_A MGS, methylglyoxal synt 49.5 21 0.00073 24.1 3.9 45 83-128 38-83 (134)
116 3rc3_A ATP-dependent RNA helic 47.5 25 0.00087 30.6 5.1 51 2-59 344-400 (677)
117 1t5i_A C_terminal domain of A 46.8 17 0.00057 25.2 3.3 48 2-55 55-106 (172)
118 2oca_A DAR protein, ATP-depend 45.8 20 0.00068 29.5 4.1 52 2-58 371-426 (510)
119 2rb4_A ATP-dependent RNA helic 44.7 19 0.00063 24.9 3.2 47 2-54 58-108 (175)
120 1b93_A Protein (methylglyoxal 43.1 37 0.0013 23.4 4.4 42 86-128 49-91 (152)
121 3pey_A ATP-dependent RNA helic 42.6 26 0.00088 27.3 4.1 50 2-57 267-320 (395)
122 3u42_A 50S ribosomal protein L 42.2 27 0.00093 25.9 3.9 21 96-116 174-194 (229)
123 3fht_A ATP-dependent RNA helic 41.6 26 0.00089 27.6 4.0 47 2-54 290-340 (412)
124 3i5x_A ATP-dependent RNA helic 41.3 33 0.0011 28.6 4.8 49 2-56 366-418 (563)
125 2j0s_A ATP-dependent RNA helic 41.1 27 0.00093 27.6 4.1 47 2-54 300-350 (410)
126 1w36_D RECD, exodeoxyribonucle 39.8 19 0.00066 30.8 3.1 30 48-81 262-291 (608)
127 1qle_D Cytochrome AA3, ccytoch 39.6 19 0.00065 19.1 1.9 20 98-117 3-22 (43)
128 1hv8_A Putative ATP-dependent 37.3 35 0.0012 26.2 4.1 49 2-56 262-314 (367)
129 1vmd_A MGS, methylglyoxal synt 36.3 49 0.0017 23.5 4.2 45 83-128 62-107 (178)
130 3sqw_A ATP-dependent RNA helic 36.3 44 0.0015 28.1 4.8 49 2-56 315-367 (579)
131 1xti_A Probable ATP-dependent 36.1 1.4E+02 0.0047 23.1 7.5 48 93-143 105-158 (391)
132 2d7d_A Uvrabc system protein B 35.3 33 0.0011 29.7 3.9 53 2-60 469-525 (661)
133 3bos_A Putative DNA replicatio 34.8 30 0.001 24.7 3.2 16 47-62 103-118 (242)
134 2z4s_A Chromosomal replication 33.8 83 0.0028 25.5 5.9 59 4-62 131-208 (440)
135 1s2m_A Putative ATP-dependent 33.3 40 0.0014 26.4 3.9 47 2-54 282-332 (400)
136 1gku_B Reverse gyrase, TOP-RG; 32.5 48 0.0016 30.5 4.6 47 95-143 133-181 (1054)
137 3ber_A Probable ATP-dependent 31.8 1.5E+02 0.0051 21.6 6.9 49 91-143 137-192 (249)
138 3i42_A Response regulator rece 31.4 83 0.0028 19.5 4.7 79 82-163 36-122 (127)
139 2r2a_A Uncharacterized protein 31.1 15 0.00053 26.4 1.0 14 49-62 88-101 (199)
140 3u61_B DNA polymerase accessor 31.1 48 0.0016 25.3 3.9 14 48-61 105-118 (324)
141 3lwd_A 6-phosphogluconolactona 30.5 20 0.00069 26.4 1.5 33 26-58 36-71 (226)
142 3lhi_A Putative 6-phosphogluco 30.2 20 0.0007 26.5 1.5 35 24-58 35-72 (232)
143 3nwp_A 6-phosphogluconolactona 29.1 22 0.00074 26.4 1.5 35 24-58 38-75 (233)
144 2yvq_A Carbamoyl-phosphate syn 28.9 38 0.0013 22.9 2.6 44 83-127 57-104 (143)
145 3ly5_A ATP-dependent RNA helic 28.7 1.7E+02 0.0058 21.5 6.5 50 90-143 151-207 (262)
146 2gk6_A Regulator of nonsense t 28.3 42 0.0014 28.7 3.3 35 23-61 318-352 (624)
147 2orw_A Thymidine kinase; TMTK, 28.2 32 0.0011 24.2 2.2 13 48-60 76-88 (184)
148 3bbo_D Ribosomal protein L1; l 28.1 37 0.0013 26.9 2.7 17 100-116 291-307 (352)
149 1c4o_A DNA nucleotide excision 27.5 43 0.0015 29.0 3.3 52 2-59 463-518 (664)
150 2xau_A PRE-mRNA-splicing facto 27.4 67 0.0023 28.4 4.5 47 2-54 338-393 (773)
151 2lpm_A Two-component response 26.7 1.3E+02 0.0046 19.4 5.6 112 45-161 5-120 (123)
152 4ag6_A VIRB4 ATPase, type IV s 25.8 30 0.001 27.5 1.9 15 48-62 262-276 (392)
153 1wp9_A ATP-dependent RNA helic 25.6 49 0.0017 26.3 3.2 50 2-57 385-446 (494)
154 2rdm_A Response regulator rece 25.4 1.3E+02 0.0043 18.7 5.6 46 82-127 38-87 (132)
155 3s99_A Basic membrane lipoprot 25.4 95 0.0033 24.4 4.7 54 3-56 61-118 (356)
156 3izc_H 60S ribosomal protein R 24.4 2.3E+02 0.0078 21.3 6.7 78 108-192 136-222 (256)
157 2fsf_A Preprotein translocase 24.4 1.3E+02 0.0044 27.1 5.7 38 84-127 134-171 (853)
158 2b8t_A Thymidine kinase; deoxy 23.7 77 0.0026 23.2 3.6 32 28-60 70-101 (223)
159 3qoy_A 50S ribosomal protein L 23.6 69 0.0023 23.9 3.4 22 95-116 176-197 (242)
160 2ipc_A Preprotein translocase 23.4 1.1E+02 0.0038 27.9 5.0 40 82-127 137-176 (997)
161 2pl3_A Probable ATP-dependent 22.8 1.3E+02 0.0043 21.5 4.8 48 91-143 123-177 (236)
162 3kht_A Response regulator; PSI 22.7 1.5E+02 0.0052 18.7 5.5 46 82-127 40-89 (144)
163 1tf5_A Preprotein translocase 22.5 1.4E+02 0.0049 26.7 5.6 38 84-127 143-180 (844)
164 3iwt_A 178AA long hypothetical 22.5 1.9E+02 0.0066 19.8 6.7 52 82-133 42-95 (178)
165 1nkt_A Preprotein translocase 22.5 1.5E+02 0.005 26.9 5.7 39 83-127 170-208 (922)
166 2wjy_A Regulator of nonsense t 22.3 52 0.0018 29.3 2.8 35 23-61 494-528 (800)
167 2xzl_A ATP-dependent helicase 21.8 59 0.002 28.9 3.1 34 23-61 497-530 (802)
168 4b3f_X DNA-binding protein smu 21.4 24 0.00082 30.3 0.5 38 24-61 342-379 (646)
169 3flu_A DHDPS, dihydrodipicolin 21.1 2.8E+02 0.0094 21.1 6.8 46 82-127 30-84 (297)
170 1jbk_A CLPB protein; beta barr 20.8 63 0.0022 21.8 2.6 14 49-62 116-129 (195)
171 3cpr_A Dihydrodipicolinate syn 20.1 2.9E+02 0.01 21.0 6.6 46 82-127 39-93 (304)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-38 Score=262.98 Aligned_cols=200 Identities=35% Similarity=0.627 Sum_probs=183.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCC--Cc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLP--PA 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~--~~ 79 (210)
++++..++||.+...+...+..+++|+|+||++|.+++.++.+.+++++++|+||||+|++.++...+..++..+. ..
T Consensus 157 ~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~ 236 (434)
T 2db3_A 157 YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE 236 (434)
T ss_dssp SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSS
T ss_pred CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCC
Confidence 5788899999999999999999999999999999999999989999999999999999999999999988887642 22
Q ss_pred hh--------------------------------------------------------------------------HHHH
Q psy6712 80 TQ--------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 80 ~~--------------------------------------------------------------------------~~~l 85 (210)
.+ ++.+
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l 316 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFL 316 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHH
T ss_pred ceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence 22 8889
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
++.|.+.++++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+
T Consensus 317 ~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 317 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp HHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC
T ss_pred HHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecc-CcHHHHHHHHHHhcCccccccCCccc
Q psy6712 166 KGVAISFVKS-DDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 166 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
.|.+++|+.+ .+......+.+.+....+++|..+.+
T Consensus 397 ~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 397 NGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred CCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999995 57788889999999998888876543
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.8e-37 Score=253.75 Aligned_cols=201 Identities=90% Similarity=1.400 Sum_probs=188.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+..++...+..+++|+|+||+++.+++.++.+.+.+++++|+||||.+.+.++...+..++..++...+
T Consensus 133 ~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 133 NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 212 (410)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCE
T ss_pred CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCce
Confidence 67889999999999999888889999999999999999998888999999999999999999998888888877665444
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 213 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 292 (410)
T 2j0s_A 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 292 (410)
T ss_dssp EEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHH
Confidence 7889
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
++.|.+.++.+..+||+|+..+|..+++.|++|+.++||||+++++|+|+|++++||++|+|++...|+||+||+||.|+
T Consensus 293 ~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 293 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 372 (410)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred HHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
.|.+++|+.+.+...++.++++++.+++++|.+..++
T Consensus 373 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (410)
T 2j0s_A 373 KGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 409 (410)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTT
T ss_pred ceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhc
Confidence 9999999999999999999999999999999887654
No 3
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.9e-35 Score=242.25 Aligned_cols=202 Identities=41% Similarity=0.748 Sum_probs=186.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+..+++|+|+||+++.+.+.++...+++++++|+||||++.+.++...+..++..++...+
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 117 GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 67899999999998888888889999999999999999888888999999999999999988887777777766554333
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy6712 82 --------------------------------------------------------------------------VDWLTE 87 (210)
Q Consensus 82 --------------------------------------------------------------------------~~~l~~ 87 (210)
++.+++
T Consensus 197 ~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 197 SLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHH
Confidence 788889
Q ss_pred HHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCce
Q psy6712 88 KMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g 167 (210)
.|.+.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|
T Consensus 277 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 356 (400)
T 1s2m_A 277 KITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 356 (400)
T ss_dssp HHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE
T ss_pred HHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCcHHHHHHHHHHhcCccccccCCccccC
Q psy6712 168 VAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
.|++++++.+...++++++.++.+++++|....+.+
T Consensus 357 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 392 (400)
T 1s2m_A 357 LAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSL 392 (400)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGGG
T ss_pred eEEEEeccchHHHHHHHHHHhCCCcccccccccccc
Confidence 999999999999999999999999999998887766
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=248.82 Aligned_cols=201 Identities=68% Similarity=1.100 Sum_probs=168.6
Q ss_pred CceEEEEEcCcchHHHHHHhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++.+..++||.+...+...+. .+++|+|+||+++.+.+.++.+.+++++++|+||||++.++++...+..++..++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 136 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 577889999999988888876 6789999999999999999888899999999999999999898888888877665444
Q ss_pred h----------------------------------------------------------------------------HHH
Q psy6712 81 Q----------------------------------------------------------------------------VDW 84 (210)
Q Consensus 81 ~----------------------------------------------------------------------------~~~ 84 (210)
+ ++.
T Consensus 216 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 216 QVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred eEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 3 788
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCC
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g 164 (210)
+++.|.+.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++++|.+...|+||+||+||.|
T Consensus 296 l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 296 LTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp HHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC----
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 165 RKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
+.|.+++++.+.+...++.++++++..++++|.+..++
T Consensus 376 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 376 RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp ---CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999887765
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.2e-36 Score=246.63 Aligned_cols=201 Identities=38% Similarity=0.655 Sum_probs=180.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC--CC-
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL--PP- 78 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~--~~- 78 (210)
++++..++||.+..++...+..+++|+|+||+++.+++..+.+.+++++++|+||||.+.++++...+..++... +.
T Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 208 (417)
T 2i4i_A 129 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK 208 (417)
T ss_dssp SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB
T ss_pred CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc
Confidence 678999999999999999998899999999999999999988889999999999999999998888888887632 21
Q ss_pred -chh----------------------------------------------------------------------------
Q psy6712 79 -ATQ---------------------------------------------------------------------------- 81 (210)
Q Consensus 79 -~~~---------------------------------------------------------------------------- 81 (210)
..+
T Consensus 209 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~ 288 (417)
T 2i4i_A 209 GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKG 288 (417)
T ss_dssp TTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHH
T ss_pred CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 111
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
++.+++.|.+.++.+..+||+|+.++|.++++.|++|+.++||||+++++|+|+|++++||+||+|.+...|+||+||+|
T Consensus 289 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (417)
T 2i4i_A 289 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368 (417)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCcccc
Q psy6712 162 RFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 162 R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
|.|+.|.+++|+.+.+...++.+.+.+.....++|.....+
T Consensus 369 R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 369 RVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp C--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred cCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 99999999999999999999999999988777777655443
No 6
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-33 Score=229.79 Aligned_cols=195 Identities=38% Similarity=0.689 Sum_probs=177.8
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.....+...+. +++|+|+||+++.+.+..+...+.+++++|+||||.+.+.++...+..++..++...+
T Consensus 102 ~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 180 (367)
T 1hv8_A 102 NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 180 (367)
T ss_dssp CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCE
T ss_pred CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCce
Confidence 567889999999887777665 7899999999999999988888999999999999999988888777777765543333
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Q psy6712 82 ----------------------------------------------------------------------VDWLTEKMRE 91 (210)
Q Consensus 82 ----------------------------------------------------------------------~~~l~~~l~~ 91 (210)
++.+++.|++
T Consensus 181 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~ 260 (367)
T 1hv8_A 181 ILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD 260 (367)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh
Confidence 7888999999
Q ss_pred cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 92 ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 92 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++++|++..+|.||+||+||.|+.|.+++
T Consensus 261 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 340 (367)
T 1hv8_A 261 IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS 340 (367)
T ss_dssp TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE
T ss_pred cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHhcCccccccC
Q psy6712 172 FVKSDDIRILRDIEQYYSTQIDEMPM 197 (210)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (210)
++.+.+...++.+++.++.++++++.
T Consensus 341 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 341 IINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp EECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred EEcHHHHHHHHHHHHHhCCCCceecc
Confidence 99999999999999999999988764
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=9.1e-34 Score=232.43 Aligned_cols=199 Identities=35% Similarity=0.701 Sum_probs=178.0
Q ss_pred CceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~ 79 (210)
++++..++||.+.+.+...+.. .++|+|+||+++..++.++...+++++++|+||||.+.+ .++...+..++...+..
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~ 184 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSS
T ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCC
Confidence 6789999999998888777765 479999999999999998888899999999999999987 36667777776655433
Q ss_pred hh----------------------------------------------------------------------------HH
Q psy6712 80 TQ----------------------------------------------------------------------------VD 83 (210)
Q Consensus 80 ~~----------------------------------------------------------------------------~~ 83 (210)
.+ ++
T Consensus 185 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 185 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp SEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred ceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 33 78
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCC
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRF 163 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~ 163 (210)
.+++.|.+.++.+..+||+|+.++|.+++++|++|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.
T Consensus 265 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 344 (391)
T 1xti_A 265 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344 (391)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSS
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeccC-cHHHHHHHHHHhcCccccccCCcc
Q psy6712 164 GRKGVAISFVKSD-DIRILRDIEQYYSTQIDEMPMNGK 200 (210)
Q Consensus 164 g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 200 (210)
|+.|.+++++.+. +...++.+++.++..++++|....
T Consensus 345 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 345 GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp CCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999876 557789999999999999987643
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.2e-34 Score=244.15 Aligned_cols=193 Identities=29% Similarity=0.575 Sum_probs=170.4
Q ss_pred ceEEEEEcCcchHHHHHHhc-CCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCC--
Q psy6712 3 VQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP-- 78 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~-~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~-- 78 (210)
+.+..++||.+...++..+. .+++|+|+||+++.+++.+. ...+++++++|+||||++.++++.+.+..++..++.
T Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~ 258 (563)
T 3i5x_A 179 YACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 258 (563)
T ss_dssp SCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC
T ss_pred eeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcc
Confidence 56888999999988888874 48999999999999988775 446789999999999999999988888777654321
Q ss_pred -----chh------------------------------------------------------------------------
Q psy6712 79 -----ATQ------------------------------------------------------------------------ 81 (210)
Q Consensus 79 -----~~~------------------------------------------------------------------------ 81 (210)
..+
T Consensus 259 ~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 338 (563)
T 3i5x_A 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 338 (563)
T ss_dssp SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTT
T ss_pred ccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCC
Confidence 111
Q ss_pred -------------HHHHHHHHHhc---CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec
Q psy6712 82 -------------VDWLTEKMREA---NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD 145 (210)
Q Consensus 82 -------------~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~ 145 (210)
++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 418 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEEC
Confidence 67788888775 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccc
Q psy6712 146 LPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEM 195 (210)
Q Consensus 146 ~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
+|.++..|+||+||+||.|+.|.+++++.+.+...++.+++.....+...
T Consensus 419 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 419 VPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred CCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999887766544
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-33 Score=243.61 Aligned_cols=193 Identities=29% Similarity=0.572 Sum_probs=171.4
Q ss_pred ceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCC--
Q psy6712 3 VQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP-- 78 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~-- 78 (210)
+.+..++||.....+...+.. +++|+|+||+++.+++.+. ...++.++++|+||||++.+++|.+.+..++..++.
T Consensus 128 ~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~ 207 (579)
T 3sqw_A 128 YACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 207 (579)
T ss_dssp SCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC
T ss_pred eEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhh
Confidence 568889999999988888854 8999999999999988775 456789999999999999999998888777655421
Q ss_pred -----chh------------------------------------------------------------------------
Q psy6712 79 -----ATQ------------------------------------------------------------------------ 81 (210)
Q Consensus 79 -----~~~------------------------------------------------------------------------ 81 (210)
..+
T Consensus 208 ~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (579)
T 3sqw_A 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDS 287 (579)
T ss_dssp SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCC
Confidence 111
Q ss_pred -------------HHHHHHHHHhc---CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEec
Q psy6712 82 -------------VDWLTEKMREA---NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD 145 (210)
Q Consensus 82 -------------~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~ 145 (210)
++.+++.|.+. ++.+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIG 367 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEES
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcC
Confidence 67788888776 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccc
Q psy6712 146 LPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEM 195 (210)
Q Consensus 146 ~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (210)
+|.++..|+||+||+||.|+.|.+++++.+.+...++.+++.....+...
T Consensus 368 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 368 VPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp CCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred CCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999887766543
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.3e-35 Score=241.12 Aligned_cols=201 Identities=63% Similarity=1.040 Sum_probs=66.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+..++...+. +++|+|+||+++.+.+.++...+.+++++|+||||.+.++++...+..++..++...+
T Consensus 117 ~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~ 195 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 195 (394)
T ss_dssp CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCE
T ss_pred CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCce
Confidence 678999999999887776665 6899999999999999988888899999999999999988888777777665544333
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 196 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 196 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 6777
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCC
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~ 165 (210)
++.|++.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.|+
T Consensus 276 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 276 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccC
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
.|.+++++.+.+...++.++++++..++.+|....+++
T Consensus 356 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 356 KGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp --------------------------------------
T ss_pred CceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 99999999999999999999999999999998877655
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-32 Score=225.66 Aligned_cols=199 Identities=36% Similarity=0.718 Sum_probs=164.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~ 79 (210)
++++....||..... ....+++|+|+||+++.+++.+ +.+.+++++++|+||||.+.+ .++...+..+...++..
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 200 (412)
T 3fht_A 124 ELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 200 (412)
T ss_dssp TCCEEEECTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTT
T ss_pred cceEEEeecCcchhh---hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCC
Confidence 355666677665432 1234679999999999998866 667789999999999999986 56766666666655544
Q ss_pred hh----------------------------------------------------------------------------HH
Q psy6712 80 TQ----------------------------------------------------------------------------VD 83 (210)
Q Consensus 80 ~~----------------------------------------------------------------------------~~ 83 (210)
.+ ++
T Consensus 201 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 201 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp CEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred ceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 33 88
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC------CChhHHHHhh
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP------NNRELYIHRI 157 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p------~s~~~~~q~~ 157 (210)
.+++.|.+.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++|+| .+...|+||+
T Consensus 281 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 281 WLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360 (412)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999 4678999999
Q ss_pred hhhcCCCCceeEEEEeccCc-HHHHHHHHHHhcCccccccCCccccC
Q psy6712 158 GRSGRFGRKGVAISFVKSDD-IRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 158 GR~gR~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
||+||.|+.|.+++++.+.+ ...++.+++.++..+.+++.+..+.+
T Consensus 361 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 361 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred CcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99999999999999998764 78899999999999999887654433
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-32 Score=219.15 Aligned_cols=183 Identities=32% Similarity=0.593 Sum_probs=156.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+. +++|+|+||+++.+.+..+.+.+.+++++|+||||.+.++++...+..++...+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
T 2z0m_A 84 DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKI 162 (337)
T ss_dssp CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSE
T ss_pred CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccE
Confidence 578899999999888777765 4899999999999999888888899999999999999998888888777765544333
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Q psy6712 82 ----------------------------------------------------------------------VDWLTEKMRE 91 (210)
Q Consensus 82 ----------------------------------------------------------------------~~~l~~~l~~ 91 (210)
++.+++.|.
T Consensus 163 ~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 163 TGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp EEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred EEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 344444443
Q ss_pred cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 92 ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 92 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
++..+||+|+..+|.+++++|++|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++
T Consensus 242 ---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~ 318 (337)
T 2z0m_A 242 ---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAIT 318 (337)
T ss_dssp ---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEE
T ss_pred ---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEE
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHhcC
Q psy6712 172 FVKSDDIRILRDIEQYYST 190 (210)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ 190 (210)
++. .+...++.+++.++.
T Consensus 319 ~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 319 FIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp EES-SCHHHHHHHC-----
T ss_pred EEe-CcHHHHHHHHHHhcc
Confidence 999 888888888877653
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.5e-32 Score=220.28 Aligned_cols=192 Identities=44% Similarity=0.811 Sum_probs=163.9
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCchh
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~~ 81 (210)
+.+..++|+.... ....+++|+|+||+++.+.+.++...+++++++|+||||.+.+ .++...+..+...++...+
T Consensus 104 ~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~ 179 (395)
T 3pey_A 104 ITSQLIVPDSFEK----NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179 (395)
T ss_dssp CCEEEESTTSSCT----TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCE
T ss_pred eeEEEEecCchhh----hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcE
Confidence 4455555554332 1123689999999999999998888899999999999999987 5777777777666554433
Q ss_pred ----------------------------------------------------------------------------HHHH
Q psy6712 82 ----------------------------------------------------------------------------VDWL 85 (210)
Q Consensus 82 ----------------------------------------------------------------------------~~~l 85 (210)
++.+
T Consensus 180 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 259 (395)
T 3pey_A 180 LVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVL 259 (395)
T ss_dssp EEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHH
Confidence 8889
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC------ChhHHHHhhhh
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN------NRELYIHRIGR 159 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~------s~~~~~q~~GR 159 (210)
++.|++.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||++|+|+ +...|+||+||
T Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR 339 (395)
T 3pey_A 260 YGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGR 339 (395)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTT
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hcCCCCceeEEEEeccC-cHHHHHHHHHHhc-CccccccCC
Q psy6712 160 SGRFGRKGVAISFVKSD-DIRILRDIEQYYS-TQIDEMPMN 198 (210)
Q Consensus 160 ~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 198 (210)
+||.|+.|.+++++.+. +...++.+++.++ ..+..++.+
T Consensus 340 ~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 340 TGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380 (395)
T ss_dssp SSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSS
T ss_pred cccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChH
Confidence 99999999999999864 5567888888887 777766654
No 14
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=7.1e-31 Score=217.35 Aligned_cols=188 Identities=20% Similarity=0.317 Sum_probs=155.6
Q ss_pred CCceEEEEEcCcch---HHHHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-----------cch
Q psy6712 1 MNVQCHACIGGTNL---SEDLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-----------KGF 65 (210)
Q Consensus 1 ~~i~~~~~~gg~~~---~~~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-----------~~~ 65 (210)
.|+++..++||.+. ..++..+..+ ++|+|+||+++.+++.. +.+++++++|+||||++.+ .++
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~ 167 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 167 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCC
Confidence 37899999999998 6677777766 99999999999887765 6678999999999987654 455
Q ss_pred HHH-HHHHHhhCC-----------Cchh----------------------------------------------------
Q psy6712 66 KEQ-IYDVYRYLP-----------PATQ---------------------------------------------------- 81 (210)
Q Consensus 66 ~~~-~~~i~~~~~-----------~~~~---------------------------------------------------- 81 (210)
.+. +..++..++ ...+
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 247 (414)
T 3oiy_A 168 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVEL 247 (414)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHHHHHHH
T ss_pred cHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeeccCHHHHHHHH
Confidence 555 566665432 2112
Q ss_pred -----------------HHHHHHHHHhcCceEE-EecCCCCHhHHHHHHHHHhcCCCcEEEE----ecCccccCCCCC-C
Q psy6712 82 -----------------VDWLTEKMREANFTVS-SMHGDMPQKERDGIMKEFRSGTSRVLIT----TDVWARGIDVQQ-V 138 (210)
Q Consensus 82 -----------------~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~g~d~~~-~ 138 (210)
++.+++.|.+.++.+. .+||. +| + ++.|++|+.++||| |+++++|+|+|+ +
T Consensus 248 l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v 321 (414)
T 3oiy_A 248 LEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLTRGVDLPERI 321 (414)
T ss_dssp HHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTC
T ss_pred HHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhhccCcccccc
Confidence 7889999999999998 99985 33 3 99999999999999 999999999999 9
Q ss_pred cEEEEecCC--CChhHHHHhhhhhcCCC----CceeEEEEeccCcHHHHHHHHHHhc--CccccccCC
Q psy6712 139 SLVINYDLP--NNRELYIHRIGRSGRFG----RKGVAISFVKSDDIRILRDIEQYYS--TQIDEMPMN 198 (210)
Q Consensus 139 ~~vi~~~~p--~s~~~~~q~~GR~gR~g----~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 198 (210)
++||+||+| .+...|+||+||+||.| ..|.+++++ .+...++.+++.++ .+++..+.+
T Consensus 322 ~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 387 (414)
T 3oiy_A 322 KYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEA 387 (414)
T ss_dssp CEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEGG
T ss_pred CEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccccc
Confidence 999999999 99999999999999997 479999999 67788888888888 555554443
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=230.83 Aligned_cols=194 Identities=37% Similarity=0.731 Sum_probs=54.8
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCch
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~ 80 (210)
+.+....||..... ....+++|+|+||+++.+++.+ +.+.+++++++|+||+|.+.+ .++......+...++...
T Consensus 192 ~~~~~~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~ 268 (479)
T 3fmp_B 192 LKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 268 (479)
T ss_dssp CCEEEESTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTS
T ss_pred ceEEEEeCCccccc---cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccc
Confidence 45566666655431 1234679999999999999866 567789999999999999987 566666666666555443
Q ss_pred h----------------------------------------------------------------------------HHH
Q psy6712 81 Q----------------------------------------------------------------------------VDW 84 (210)
Q Consensus 81 ~----------------------------------------------------------------------------~~~ 84 (210)
+ ++.
T Consensus 269 ~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~ 348 (479)
T 3fmp_B 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 348 (479)
T ss_dssp EEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------------------------
T ss_pred eEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHH
Confidence 3 777
Q ss_pred HHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC------ChhHHHHhhh
Q psy6712 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN------NRELYIHRIG 158 (210)
Q Consensus 85 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~------s~~~~~q~~G 158 (210)
+++.|...+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+|
T Consensus 349 l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 349 LAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 8888888899999999999999999999999999999999999999999999999999999994 6789999999
Q ss_pred hhcCCCCceeEEEEeccCc-HHHHHHHHHHhcCccccccCCc
Q psy6712 159 RSGRFGRKGVAISFVKSDD-IRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 159 R~gR~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
|+||.|+.|.+++|+.+.+ ...++.+++.++..+.+++.+.
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp ------------------------------------------
T ss_pred ccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 9999999999999998764 7788899999998888877554
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=1.5e-30 Score=221.25 Aligned_cols=183 Identities=20% Similarity=0.309 Sum_probs=146.6
Q ss_pred CCceEEEEEcCcchHHHH---HHh-cCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc--hHHHHHH---
Q psy6712 1 MNVQCHACIGGTNLSEDL---RKL-DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG--FKEQIYD--- 71 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~---~~l-~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~--~~~~~~~--- 71 (210)
+|+++..++|+.+..++. ..+ ...++|+++||+++........+...+++++|+||||++.+++ +.+....
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~ 167 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQ 167 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGG
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHH
Confidence 478889999998766544 233 3468999999999864322233445789999999999998765 3222211
Q ss_pred HHhhC-----------------------------------------------------------------------CCch
Q psy6712 72 VYRYL-----------------------------------------------------------------------PPAT 80 (210)
Q Consensus 72 i~~~~-----------------------------------------------------------------------~~~~ 80 (210)
+.... +...
T Consensus 168 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~ 247 (523)
T 1oyw_A 168 LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRA 247 (523)
T ss_dssp HHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred HHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHH
Confidence 11111 1111
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
.++.+++.|.+.++.+..+||+|+.++|.+++++|++|+.+|||||+++++|+|+|++++||++++|.|...|.||+||+
T Consensus 248 ~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 327 (523)
T 1oyw_A 248 KVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (523)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccc
Confidence 18899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccCcHHHHHH
Q psy6712 161 GRFGRKGVAISFVKSDDIRILRD 183 (210)
Q Consensus 161 gR~g~~g~~~~~~~~~~~~~~~~ 183 (210)
||.|..|.+++++++.+...++.
T Consensus 328 GR~g~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 328 GRDGLPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp CTTSSCEEEEEEECHHHHHHHHH
T ss_pred cCCCCCceEEEEeCHHHHHHHHH
Confidence 99999999999998876655443
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=2.2e-30 Score=222.74 Aligned_cols=182 Identities=16% Similarity=0.296 Sum_probs=146.2
Q ss_pred CceEEEEEcCcchHHHHHH---h---cCCCcEEEEChHHHHH---HHH--hcCccCCCccEEEechhhHHhccc--hHHH
Q psy6712 2 NVQCHACIGGTNLSEDLRK---L---DYGQHVVSGTPGRVFD---MIR--RRVLRTRNIKMLVLDEADEMLNKG--FKEQ 68 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~---l---~~~~~Ili~Tp~~l~~---~l~--~~~~~~~~~~~lviDE~~~l~~~~--~~~~ 68 (210)
|+++..++|+.+..++... + ..+++|+++||+++.. ++. .+...+.++.++|+||||++.+++ |.+.
T Consensus 108 gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~ 187 (591)
T 2v1x_A 108 GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPD 187 (591)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGG
T ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHH
Confidence 6889999999887665432 2 3478999999998742 221 134457889999999999998765 3221
Q ss_pred HH------------------------------------------------------------------HHHh--------
Q psy6712 69 IY------------------------------------------------------------------DVYR-------- 74 (210)
Q Consensus 69 ~~------------------------------------------------------------------~i~~-------- 74 (210)
+. .++.
T Consensus 188 ~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 188 YKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp GGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccC
Confidence 11 1111
Q ss_pred -----hCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCC
Q psy6712 75 -----YLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNN 149 (210)
Q Consensus 75 -----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s 149 (210)
|++....++.+++.|.+.++.+..+||+|+.++|.+++++|++|+.+|||||+++++|+|+|++++||+|++|.|
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSS
T ss_pred CCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCC
Confidence 111112288899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHH
Q psy6712 150 RELYIHRIGRSGRFGRKGVAISFVKSDDIRILRD 183 (210)
Q Consensus 150 ~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~ 183 (210)
...|+||+||+||.|..|.|++++++.|...++.
T Consensus 348 ~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 348 MENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 9999999999999999999999998876655443
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.5e-31 Score=222.97 Aligned_cols=180 Identities=44% Similarity=0.797 Sum_probs=133.7
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCchh--------------------
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPATQ-------------------- 81 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~~~-------------------- 81 (210)
.+++|+|+||+++.+.+.++.+.+++++++|+||+|.+.+ .++...+..+...++...+
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 313 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA 313 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHS
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc
Confidence 3789999999999999998888899999999999999987 5677777667665554333
Q ss_pred --------------------------------------------------------HHHHHHHHHhcCceEEEecCCCCH
Q psy6712 82 --------------------------------------------------------VDWLTEKMREANFTVSSMHGDMPQ 105 (210)
Q Consensus 82 --------------------------------------------------------~~~l~~~l~~~~~~~~~~~~~~~~ 105 (210)
++.+++.|.+.+..+..+||+|+.
T Consensus 314 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~ 393 (508)
T 3fho_A 314 PNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEG 393 (508)
T ss_dssp TTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----
T ss_pred CCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 777888888889999999999999
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC------CChhHHHHhhhhhcCCCCceeEEEEecc-CcH
Q psy6712 106 KERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP------NNRELYIHRIGRSGRFGRKGVAISFVKS-DDI 178 (210)
Q Consensus 106 ~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p------~s~~~~~q~~GR~gR~g~~g~~~~~~~~-~~~ 178 (210)
.+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .+...|+||+||+||.|+.|.+++++.+ .+.
T Consensus 394 ~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~ 473 (508)
T 3fho_A 394 AQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSW 473 (508)
T ss_dssp CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSS
T ss_pred HHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHH
Confidence 999999999999999999999999999999999999999999 8899999999999999999999999985 566
Q ss_pred HHHHHHHHHhcCccccccCCcccc
Q psy6712 179 RILRDIEQYYSTQIDEMPMNGKRS 202 (210)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~ 202 (210)
..++.++++++..+.+++......
T Consensus 474 ~~~~~i~~~~~~~i~~l~~~~~~~ 497 (508)
T 3fho_A 474 EEMNAIQEYFQRPITRVPTDDYEE 497 (508)
T ss_dssp SSHHHHHHHSCCCCC---------
T ss_pred HHHHHHHHHHCCCcccCCCccHHH
Confidence 778999999999999988765443
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=4.5e-29 Score=213.07 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=35.7
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
|.....+||+|+.++|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.++.
T Consensus 426 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 503 (556)
T 4a2p_A 426 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 503 (556)
T ss_dssp ----------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEE
T ss_pred ccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 3444556778999999999999999 999999999999999999999999999999999999999999 998 8899999
Q ss_pred EeccCcH
Q psy6712 172 FVKSDDI 178 (210)
Q Consensus 172 ~~~~~~~ 178 (210)
++...+.
T Consensus 504 l~~~~~~ 510 (556)
T 4a2p_A 504 VTSKTEV 510 (556)
T ss_dssp EESCHHH
T ss_pred EEeCcch
Confidence 9987644
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=1.2e-28 Score=216.07 Aligned_cols=113 Identities=26% Similarity=0.367 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcC----ceEEEe--------cCCCCHhHHHHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCC
Q psy6712 82 VDWLTEKMREAN----FTVSSM--------HGDMPQKERDGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPN 148 (210)
Q Consensus 82 ~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~ 148 (210)
++.+++.|.+.+ +++..+ |++|+.++|.+++++|++ |+.+|||||+++++|+|+|++++||+||+|+
T Consensus 411 ~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~ 490 (696)
T 2ykg_A 411 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 490 (696)
T ss_dssp HHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC-
T ss_pred HHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC
Confidence 778888888877 888888 559999999999999998 9999999999999999999999999999999
Q ss_pred ChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHH----HHHhcCcccccc
Q psy6712 149 NRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDI----EQYYSTQIDEMP 196 (210)
Q Consensus 149 s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 196 (210)
++.+|+||+|| ||. +.|.++.++...+......+ ++.+...+++++
T Consensus 491 s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 491 NVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp -CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 998 78999999987766444444 445555444443
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.95 E-value=3.9e-29 Score=213.18 Aligned_cols=88 Identities=27% Similarity=0.404 Sum_probs=58.3
Q ss_pred eEEEecCCCCHhHHHHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEe
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFV 173 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~ 173 (210)
....+||+|+.++|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.++.|+
T Consensus 427 ~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~ 504 (555)
T 3tbk_A 427 GRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLT 504 (555)
T ss_dssp -------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEE
T ss_pred CCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEE
Confidence 33445569999999999999999 999999999999999999999999999999999999999999 898 889999999
Q ss_pred ccCcHHHHHHH
Q psy6712 174 KSDDIRILRDI 184 (210)
Q Consensus 174 ~~~~~~~~~~~ 184 (210)
.+.+......+
T Consensus 505 ~~~~~~~~~~~ 515 (555)
T 3tbk_A 505 SSADVIEKEKA 515 (555)
T ss_dssp SCHHHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 88765544444
No 22
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.7e-27 Score=171.87 Aligned_cols=132 Identities=60% Similarity=0.962 Sum_probs=119.0
Q ss_pred HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 72 VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 72 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
++.|++....++.+++.|.+.++.+..+||+|+..+|.++++.|++|+.++||||+++++|+|+|++++||+||+|+++.
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~ 112 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 112 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHH
Confidence 34456666779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccccC
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (210)
.|.||+||+||.|+.|.+++++.+.+...+..+++.++..++++|.....++
T Consensus 113 ~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (165)
T 1fuk_A 113 NYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 164 (165)
T ss_dssp GGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTTT
T ss_pred HHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHhhc
Confidence 9999999999999999999999999999999999999999999998876654
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=4.7e-27 Score=213.64 Aligned_cols=179 Identities=20% Similarity=0.319 Sum_probs=148.6
Q ss_pred CCceEEEEEcCcch---HHHHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh----------c-cch
Q psy6712 1 MNVQCHACIGGTNL---SEDLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML----------N-KGF 65 (210)
Q Consensus 1 ~~i~~~~~~gg~~~---~~~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~----------~-~~~ 65 (210)
.|++++.++||.+. +.++..+.++ ++|+|+||++|.+++.. +.+++++++|+||||++. + +++
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 36899999999998 7788888776 99999999999888775 677899999999997654 4 666
Q ss_pred HHH-HHHHHhhCC-----------Cchh----------------------------------------------------
Q psy6712 66 KEQ-IYDVYRYLP-----------PATQ---------------------------------------------------- 81 (210)
Q Consensus 66 ~~~-~~~i~~~~~-----------~~~~---------------------------------------------------- 81 (210)
... +..++..++ ...+
T Consensus 225 ~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~~~L~~l 304 (1104)
T 4ddu_A 225 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVEL 304 (1104)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCHHHHHHH
T ss_pred CHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHHHHHHHH
Confidence 666 677776543 2222
Q ss_pred -----------------HHHHHHHHHhcCceEE-EecCCCCHhHHHHHHHHHhcCCCcEEEE----ecCccccCCCCC-C
Q psy6712 82 -----------------VDWLTEKMREANFTVS-SMHGDMPQKERDGIMKEFRSGTSRVLIT----TDVWARGIDVQQ-V 138 (210)
Q Consensus 82 -----------------~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~g~d~~~-~ 138 (210)
++.+++.|...++++. .+||. |++ +++|++|+.++||| |+++++|+|+|+ +
T Consensus 305 l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V 378 (1104)
T 4ddu_A 305 LEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERI 378 (1104)
T ss_dssp HHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTC
T ss_pred HHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCC
Confidence 8889999999999998 99992 555 99999999999999 999999999999 9
Q ss_pred cEEEEecCCC----------------------------------------------------------------------
Q psy6712 139 SLVINYDLPN---------------------------------------------------------------------- 148 (210)
Q Consensus 139 ~~vi~~~~p~---------------------------------------------------------------------- 148 (210)
++||+||+|.
T Consensus 379 ~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~ 458 (1104)
T 4ddu_A 379 KYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELI 458 (1104)
T ss_dssp CEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEE
T ss_pred CEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEE
Confidence 9999999998
Q ss_pred --ChhHHHHhhhhhcCCCCc----eeEEEEeccCcHHHHHHHHHHhc
Q psy6712 149 --NRELYIHRIGRSGRFGRK----GVAISFVKSDDIRILRDIEQYYS 189 (210)
Q Consensus 149 --s~~~~~q~~GR~gR~g~~----g~~~~~~~~~~~~~~~~~~~~~~ 189 (210)
+..+|+||+||+||.|.. |.+++++ +|...++.+++.++
T Consensus 459 ~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 459 IPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 778999999999997643 4455555 77788888887765
No 24
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1e-26 Score=169.17 Aligned_cols=126 Identities=43% Similarity=0.739 Sum_probs=118.9
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
+++.|++....++.+++.|.+.++.+..+||+|++.+|..++++|++|+.++||+|+++++|+|+|++++||+||+|+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~ 116 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEK 116 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCH
Confidence 34557777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCcccccc
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (210)
..|+||+||+||.|+.|.+++|+.+.+...++++++.++.++++++
T Consensus 117 ~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 117 ESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp HHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred HHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999998887754
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=1.3e-26 Score=204.06 Aligned_cols=190 Identities=16% Similarity=0.229 Sum_probs=147.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCc--
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA-- 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~-- 79 (210)
|++|..++|+.+.+.. ...+++|+|+||+++..++.+....+++++++|+||+|.+.+..+...+..++..++..
T Consensus 95 g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 95 GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 7889999998776532 23478999999999999888876668899999999999988766555555544332110
Q ss_pred ----------------------------------------------------------------------------hhHH
Q psy6712 80 ----------------------------------------------------------------------------TQVD 83 (210)
Q Consensus 80 ----------------------------------------------------------------------------~~~~ 83 (210)
..++
T Consensus 172 ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~ 251 (720)
T 2zj8_A 172 IIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAE 251 (720)
T ss_dssp EEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred EEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHH
Confidence 0045
Q ss_pred HHHHHHHhc---------------------------------CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc
Q psy6712 84 WLTEKMREA---------------------------------NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130 (210)
Q Consensus 84 ~l~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 130 (210)
.+++.|.+. ...+.++||+|+.++|..+++.|++|+++|||||++++
T Consensus 252 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 331 (720)
T 2zj8_A 252 RVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS 331 (720)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh
Confidence 555555432 12489999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEE----ec----CCCChhHHHHhhhhhcCCC--CceeEEEEeccCcHHHHHHHHHHhcCcccccc
Q psy6712 131 RGIDVQQVSLVIN----YD----LPNNRELYIHRIGRSGRFG--RKGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196 (210)
Q Consensus 131 ~g~d~~~~~~vi~----~~----~p~s~~~~~q~~GR~gR~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (210)
+|+|+|++++||+ || .|.+..+|.||+|||||.| ..|.|++++.+.+.. ..+++++....+.+.
T Consensus 332 ~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 332 AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSCCCCCC
T ss_pred ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcE
Confidence 9999999999998 76 6899999999999999998 478999999887732 234455554444443
No 26
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=169.51 Aligned_cols=131 Identities=37% Similarity=0.733 Sum_probs=118.5
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC---
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP--- 147 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p--- 147 (210)
+++.|++....++.+++.|.+.++.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~ 115 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ 115 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc
Confidence 34556777777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CChhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 148 ---NNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 148 ---~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
.+..+|+||+||+||.|+.|.+++++.+.+...+.++++.++..+++++....+
T Consensus 116 ~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 172 (175)
T 2rb4_A 116 GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD 172 (175)
T ss_dssp CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECSSCCC
T ss_pred cccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCCchhc
Confidence 899999999999999999999999999999999999999999999998876543
No 27
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.4e-26 Score=169.95 Aligned_cols=131 Identities=34% Similarity=0.693 Sum_probs=118.3
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
+++.|++....++.+++.|...++++..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~ 112 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 112 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSH
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCH
Confidence 34556777777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccC-cHHHHHHHHHHhcCccccccCCccc
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSD-DIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
..|+||+||+||.|+.|.+++|+.+. +...++.+++.++..++++|.....
T Consensus 113 ~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (172)
T 1t5i_A 113 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 164 (172)
T ss_dssp HHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred HHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence 99999999999999999999999875 5678999999999999999877544
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=4e-26 Score=190.84 Aligned_cols=97 Identities=27% Similarity=0.415 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCceEEEecC--------CCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHG--------DMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~ 153 (210)
++.+.+.|.+.++++..+|| +|+..+|.+++++|++|+.++||||+++++|+|+|++++||++|+|+++..|
T Consensus 374 ~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~ 453 (494)
T 1wp9_A 374 AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 453 (494)
T ss_dssp HHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHH
Confidence 67788888888999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcHH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDIR 179 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~~ 179 (210)
.||+||+||.|. |.++.++.+.+.+
T Consensus 454 ~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 454 IQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHhhccCCCC-ceEEEEEecCCHH
Confidence 999999999998 9999999887543
No 29
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.6e-26 Score=173.88 Aligned_cols=129 Identities=30% Similarity=0.549 Sum_probs=119.5
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
.++.|++....++.+++.|.+.++.+..+||+|++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|++.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~ 112 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRA 112 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCc
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNG 199 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (210)
..|.||+||+||.|+.|.+++++++.+...++.+++.++..+..++.+.
T Consensus 113 ~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 161 (212)
T 3eaq_A 113 EAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPT 161 (212)
T ss_dssp HHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCC
T ss_pred HHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCC
Confidence 9999999999999999999999999999999999999999888876543
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=4e-27 Score=209.24 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=41.5
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
|.....+||+|+..+|.+++++|++ |++++||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.++.
T Consensus 667 G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~ 744 (797)
T 4a2q_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (797)
T ss_dssp ---------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEE
T ss_pred ecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 4455667888999999999999999 999999999999999999999999999999999999999999 998 8899999
Q ss_pred EeccCcH
Q psy6712 172 FVKSDDI 178 (210)
Q Consensus 172 ~~~~~~~ 178 (210)
++...+.
T Consensus 745 l~~~~~~ 751 (797)
T 4a2q_A 745 VTSKTEV 751 (797)
T ss_dssp EECCHHH
T ss_pred EEeCCcH
Confidence 9987544
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=4.6e-26 Score=198.53 Aligned_cols=94 Identities=20% Similarity=0.335 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC--------CCcEEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ--------QVSLVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~--------~~~~vi~~~~p~s~~~~ 153 (210)
++.+++.|...|+++..+||++...++..+..+|+.| .|+|||++++||+|++ +..+||+|+.|.|...|
T Consensus 445 se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y 522 (844)
T 1tf5_A 445 SELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRID 522 (844)
T ss_dssp HHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHH
Confidence 7888888888999999999999888887666666654 7999999999999999 78899999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCc
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDD 177 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~ 177 (210)
.||+||+||.|.+|.+++|++..|
T Consensus 523 ~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 523 NQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999999998765
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=2.5e-26 Score=208.53 Aligned_cols=174 Identities=18% Similarity=0.288 Sum_probs=139.5
Q ss_pred eEEEEEcCcchHHH---HHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCC---
Q psy6712 4 QCHACIGGTNLSED---LRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLP--- 77 (210)
Q Consensus 4 ~~~~~~gg~~~~~~---~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~--- 77 (210)
++..++||.+...+ ...+.+ ++|+|+||++|.+++.+ +++++++|+||||+++++ ...+..++..+.
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~ 205 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHY 205 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEE
T ss_pred eEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cccHHHHHHHhCcch
Confidence 89999999987764 455556 99999999999987765 679999999999999872 233333332221
Q ss_pred ------------------------------------------------------------------------------Cc
Q psy6712 78 ------------------------------------------------------------------------------PA 79 (210)
Q Consensus 78 ------------------------------------------------------------------------------~~ 79 (210)
..
T Consensus 206 ~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~t~ 285 (1054)
T 1gku_B 206 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTG 285 (1054)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTHHHHTTSCSCEEEEESSH
T ss_pred hhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHHHHHhhcCCCEEEEEcCH
Confidence 11
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEE----ecCccccCCCCCC-cEEEEecCC-------
Q psy6712 80 TQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLIT----TDVWARGIDVQQV-SLVINYDLP------- 147 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~g~d~~~~-~~vi~~~~p------- 147 (210)
..++.+++.|.+. +++..+||+| .++++.|++|+.+|||| |+++++|+|+|+| ++||++|+|
T Consensus 286 ~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~ 359 (1054)
T 1gku_B 286 EEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIE 359 (1054)
T ss_dssp HHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECS
T ss_pred HHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccccccc
Confidence 1188899999887 9999999998 37889999999999999 8999999999996 999999999
Q ss_pred ----------------------------------------------------------------CChhHHHHhhhhhcCC
Q psy6712 148 ----------------------------------------------------------------NNRELYIHRIGRSGRF 163 (210)
Q Consensus 148 ----------------------------------------------------------------~s~~~~~q~~GR~gR~ 163 (210)
.+..+|+||+||+||.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~ 439 (1054)
T 1gku_B 360 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRL 439 (1054)
T ss_dssp CGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCE
T ss_pred ccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhc
Confidence 7899999999999998
Q ss_pred CCce--eEEEEeccCcHHHHHHHHHHhcC
Q psy6712 164 GRKG--VAISFVKSDDIRILRDIEQYYST 190 (210)
Q Consensus 164 g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 190 (210)
|..| .+++++...+...++.+++.++.
T Consensus 440 g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 440 FAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp ETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 7765 48888888888899999988875
No 33
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=4.8e-26 Score=199.87 Aligned_cols=174 Identities=18% Similarity=0.257 Sum_probs=138.6
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC----
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL---- 76 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~---- 76 (210)
+|+++..++|+....+. ...+++|+|+||+++..++.+....+++++++|+||+|.+.++++...+..++..+
T Consensus 94 ~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (702)
T 2p6r_A 94 IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170 (702)
T ss_dssp TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC
Confidence 37889999999776532 22478999999999999988876668899999999999988755544443333211
Q ss_pred -------------------------------------------------------------------------------C
Q psy6712 77 -------------------------------------------------------------------------------P 77 (210)
Q Consensus 77 -------------------------------------------------------------------------------~ 77 (210)
+
T Consensus 171 ~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 250 (702)
T 2p6r_A 171 KALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFES 250 (702)
T ss_dssp TTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECS
T ss_pred cCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcC
Confidence 1
Q ss_pred CchhHHHHHHHHHhc------------------------------CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 78 PATQVDWLTEKMREA------------------------------NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 78 ~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
....++.+++.|.+. +..+.++||+|+.++|..+++.|++|+.+|||||+
T Consensus 251 s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~ 330 (702)
T 2p6r_A 251 TRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 330 (702)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECS
T ss_pred CHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECc
Confidence 111144455544331 13588899999999999999999999999999999
Q ss_pred CccccCCCCCCcEEEE----ec---CCCChhHHHHhhhhhcCCCC--ceeEEEEeccCc
Q psy6712 128 VWARGIDVQQVSLVIN----YD---LPNNRELYIHRIGRSGRFGR--KGVAISFVKSDD 177 (210)
Q Consensus 128 ~~~~g~d~~~~~~vi~----~~---~p~s~~~~~q~~GR~gR~g~--~g~~~~~~~~~~ 177 (210)
++++|+|+|++++||+ || .|.+..+|.||+|||||.|. .|.|+.++.+.+
T Consensus 331 ~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 331 TLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999998 66 78999999999999999984 789999998876
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=5.2e-26 Score=200.01 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=134.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhC-----
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYL----- 76 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~----- 76 (210)
|++|..++|+...... .+ .+++|+|+||+++..++.+....+++++++|+||+|.+.+..+...+..++..+
T Consensus 102 g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 102 GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 6789999998776543 22 378999999999999988876668999999999999987655544443332111
Q ss_pred --------------------------------------------------------------------------------
Q psy6712 77 -------------------------------------------------------------------------------- 76 (210)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (210)
T Consensus 179 i~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF 258 (715)
T 2va8_A 179 LALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVF 258 (715)
T ss_dssp EEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEE
T ss_pred EEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEE
Confidence
Q ss_pred -CCchhHHHHHHHHHhcC------------------------------------ceEEEecCCCCHhHHHHHHHHHhcCC
Q psy6712 77 -PPATQVDWLTEKMREAN------------------------------------FTVSSMHGDMPQKERDGIMKEFRSGT 119 (210)
Q Consensus 77 -~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~ 119 (210)
+....++.+++.|.+.. ..+.++||+|+.++|..+++.|++|+
T Consensus 259 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK 338 (715)
T ss_dssp CSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC
Confidence 00111555666665431 24899999999999999999999999
Q ss_pred CcEEEEecCccccCCCCCCcEEEE----ec-------CCCChhHHHHhhhhhcCCCC--ceeEEEEeccCc
Q psy6712 120 SRVLITTDVWARGIDVQQVSLVIN----YD-------LPNNRELYIHRIGRSGRFGR--KGVAISFVKSDD 177 (210)
Q Consensus 120 ~~ilv~T~~~~~g~d~~~~~~vi~----~~-------~p~s~~~~~q~~GR~gR~g~--~g~~~~~~~~~~ 177 (210)
.+|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.|. .|.|+.++.+.+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999 99 89999999999999999984 799999998765
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=201.04 Aligned_cols=92 Identities=25% Similarity=0.410 Sum_probs=75.6
Q ss_pred HHHHHHHHHhc------CceEEEecCC--------CCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC
Q psy6712 82 VDWLTEKMREA------NFTVSSMHGD--------MPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP 147 (210)
Q Consensus 82 ~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p 147 (210)
++.+++.|.+. |+++..+||+ |+..+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 413 ~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p 492 (699)
T 4gl2_A 413 AYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV 492 (699)
T ss_dssp HHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCC
T ss_pred HHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCC
Confidence 56677777766 8999999999 999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 148 NNRELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 148 ~s~~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
+|+..|+||+|||||.| +.++++...
T Consensus 493 ~s~~~~~Qr~GRArr~g--~~~~l~~~~ 518 (699)
T 4gl2_A 493 TNEIAMVQARGRARADE--STYVLVAHS 518 (699)
T ss_dssp CCHHHHHHHHTTSCSSS--CEEEEEEES
T ss_pred CCHHHHHHHcCCCCCCC--ceEEEEEeC
Confidence 99999999999987654 444444443
No 36
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=4.2e-26 Score=170.00 Aligned_cols=130 Identities=32% Similarity=0.544 Sum_probs=117.0
Q ss_pred HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 72 VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 72 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
++.|++....++.+++.|...++.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|+++.
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~ 136 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIE 136 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHH
Confidence 45577777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccC-cHHHHHHHHHHhcCccccccCCccc
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSD-DIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
.|+||+||+||.|+.|.+++|+.+. +...++.+++.+....+++|..+.+
T Consensus 137 ~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 137 NYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHh
Confidence 9999999999999999999999976 7888999999998888887765443
No 37
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.1e-26 Score=206.40 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=78.6
Q ss_pred EEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC--------CChhHHHHhhhhhcCCC--C
Q psy6712 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP--------NNRELYIHRIGRSGRFG--R 165 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p--------~s~~~~~q~~GR~gR~g--~ 165 (210)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.| .++.+|+||+|||||.| .
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~ 586 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 586 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCC
Confidence 7899999999999999999999999999999999999999999999977653 47778999999999999 5
Q ss_pred ceeEEEEeccCcHHHHHHHHHHhcCcccc
Q psy6712 166 KGVAISFVKSDDIRILRDIEQYYSTQIDE 194 (210)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (210)
.|.|++++.+.... ..+.+++......
T Consensus 587 ~G~~ill~~~~~~~--~~~~~l~~~~~~~ 613 (1108)
T 3l9o_A 587 RGIVIMMIDEKMEP--QVAKGMVKGQADR 613 (1108)
T ss_dssp SEEEEEEECCCCCH--HHHHHHHHCCCCC
T ss_pred ceEEEEEecCCcCH--HHHHHHhcCCCcc
Confidence 78999998775322 2334444444433
No 38
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=168.77 Aligned_cols=130 Identities=35% Similarity=0.634 Sum_probs=105.9
Q ss_pred HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 72 VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 72 i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
++.|++....++.+++.|...++.+..+||+|+..+|..+++.|++|+.++||||+++++|+|+|++++||+||+|+++.
T Consensus 49 ~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~ 128 (185)
T 2jgn_A 49 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 128 (185)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHH
Confidence 34455566679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCCccc
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (210)
.|+||+||+||.|+.|.+++|+.+.+...++++++.+....+++|..+..
T Consensus 129 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 178 (185)
T 2jgn_A 129 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLEN 178 (185)
T ss_dssp HHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999998888887765443
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=2e-26 Score=207.33 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=41.9
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhc-CCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRS-GTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIS 171 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~ 171 (210)
|.....+||+|+..+|.+++++|++ |++++||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..|.++.
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~ 744 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (936)
T ss_dssp ---------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEE
T ss_pred cCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEE
Confidence 4455566889999999999999999 999999999999999999999999999999999999999999 998 7889999
Q ss_pred EeccCcH
Q psy6712 172 FVKSDDI 178 (210)
Q Consensus 172 ~~~~~~~ 178 (210)
++...+.
T Consensus 745 Li~~~t~ 751 (936)
T 4a2w_A 745 VTSKTEV 751 (936)
T ss_dssp EESCHHH
T ss_pred EEeCCCH
Confidence 9877543
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.2e-25 Score=197.79 Aligned_cols=179 Identities=23% Similarity=0.323 Sum_probs=135.6
Q ss_pred CCceEEEEEcCcchHHH---HHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc------------
Q psy6712 1 MNVQCHACIGGTNLSED---LRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG------------ 64 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~---~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~------------ 64 (210)
+|++++.++||.+..+. +..+.+ .++|+|+||+.+.+ .+.+++++++|+||+|++....
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~ 518 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVD 518 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----CCCCSSSSCCC
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHHHHHHHhCCCCC
Confidence 37899999999886653 455555 48999999987643 4678999999999999963110
Q ss_pred --------h------------------------------------HHH-HHHHHh----------hCCCc--------hh
Q psy6712 65 --------F------------------------------------KEQ-IYDVYR----------YLPPA--------TQ 81 (210)
Q Consensus 65 --------~------------------------------------~~~-~~~i~~----------~~~~~--------~~ 81 (210)
. ... +..+.. +++.. ..
T Consensus 519 vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~ 598 (780)
T 1gm5_A 519 TLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKS 598 (780)
T ss_dssp EEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CH
T ss_pred EEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHH
Confidence 0 000 111111 11111 12
Q ss_pred HHHHHHHHHh---cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCC-ChhHHHHhh
Q psy6712 82 VDWLTEKMRE---ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRI 157 (210)
Q Consensus 82 ~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~-s~~~~~q~~ 157 (210)
++.+++.|.+ .++.+..+||+|+.++|..++++|++|+.+|||||+++++|+|+|++++||++++|. +...|.||+
T Consensus 599 a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~ 678 (780)
T 1gm5_A 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 678 (780)
T ss_dssp HHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHh
Confidence 5677788877 478899999999999999999999999999999999999999999999999999996 788999999
Q ss_pred hhhcCCCCceeEEEEeccCcHHHHHHH
Q psy6712 158 GRSGRFGRKGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 158 GR~gR~g~~g~~~~~~~~~~~~~~~~~ 184 (210)
||+||.|..|.|++++.+.+....+.+
T Consensus 679 GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 679 GRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp HTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred cccCcCCCCCEEEEEECCCChHHHHHH
Confidence 999999999999999985444433333
No 41
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.9e-25 Score=175.24 Aligned_cols=128 Identities=31% Similarity=0.561 Sum_probs=116.3
Q ss_pred HHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 71 ~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
.++.|++....++.+++.|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++.
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~ 109 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRA 109 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSST
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCC
Q psy6712 151 ELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (210)
..|.||+||+||.|+.|.|++|+++.+...++.+++.++..+..++.+
T Consensus 110 ~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 110 EAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp THHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred HHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999988877654
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=3.4e-25 Score=192.80 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------------------- 138 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------------------- 138 (210)
++.+++.|...|+++..+||++...++..+..+|+.| .|+|||++++||+|++..
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~ 531 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 531 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHH
Confidence 7889999999999999999999888888888889887 699999999999999874
Q ss_pred --------------cEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 139 --------------SLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 139 --------------~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 532 ~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 532 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987663
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=2e-24 Score=188.40 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCC-----------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQV----------------------- 138 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~----------------------- 138 (210)
++.|++.|.+.|+++..+||++...++..+..+|+.| .|+|||++++||+|++..
T Consensus 473 sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~ 550 (922)
T 1nkt_A 473 SEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPE 550 (922)
T ss_dssp HHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccch
Confidence 7888999999999999999998888877777888877 699999999999999975
Q ss_pred -----------------------------cEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcHH
Q psy6712 139 -----------------------------SLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIR 179 (210)
Q Consensus 139 -----------------------------~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~ 179 (210)
.+||+++.|.|...|.||+||+||+|.+|.+.+|++..|.-
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 551 EYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999887653
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=2.5e-25 Score=191.70 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=136.0
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
+.++...+|+.. +..+++|+|+||++| +.++.+.+++++++|+|||| +++.++...+..++..++...+
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 344555666654 356789999999996 56777888999999999996 5566777777777765543222
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCceEEEecCCC
Q psy6712 82 ----------------------------------------------------------VDWLTEKMREANFTVSSMHGDM 103 (210)
Q Consensus 82 ----------------------------------------------------------~~~l~~~l~~~~~~~~~~~~~~ 103 (210)
++.+++.|++.++++..+||+|
T Consensus 351 ~llil~SAT~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l 430 (666)
T 3o8b_A 351 RLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGL 430 (666)
T ss_dssp SEEEEEESSCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred ceEEEECCCCCcccccCCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 8999999999999999999999
Q ss_pred CHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEE----------Eec-----------CCCChhHHHHhhhhhcC
Q psy6712 104 PQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI----------NYD-----------LPNNRELYIHRIGRSGR 162 (210)
Q Consensus 104 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi----------~~~-----------~p~s~~~~~q~~GR~gR 162 (210)
++++ |+++..+|||||+++++|+|+| +++|| ||| .|.+..+|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9875 4556679999999999999997 99988 677 89999999999999999
Q ss_pred CCCceeEEEEeccCcHHH--H--HHHHHHhcCccccc
Q psy6712 163 FGRKGVAISFVKSDDIRI--L--RDIEQYYSTQIDEM 195 (210)
Q Consensus 163 ~g~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 195 (210)
|+.|. +.|+.+.+... + ..+++..+..+.+.
T Consensus 503 -g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~ 537 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWY 537 (666)
T ss_dssp -SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTS
T ss_pred -CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccc
Confidence 89999 89998765543 3 45555554444443
No 45
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=6.5e-27 Score=171.39 Aligned_cols=129 Identities=36% Similarity=0.595 Sum_probs=122.1
Q ss_pred HHHHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCC
Q psy6712 70 YDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNN 149 (210)
Q Consensus 70 ~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s 149 (210)
.+++.|++....++.+++.|...++.+..+||+|++.+|..+++.|++|+.++||||+++++|+|+|++++||+||+|++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~ 110 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRS 110 (170)
Confidence 46788898889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHhcCccccccCC
Q psy6712 150 RELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198 (210)
Q Consensus 150 ~~~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (210)
+..|+||+||+||.|+.|.+++++.+.+...++++++.++..+++.+.+
T Consensus 111 ~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 111 GDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 9999999999999999999999999999999999999999888876554
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.4e-24 Score=192.77 Aligned_cols=88 Identities=22% Similarity=0.403 Sum_probs=80.5
Q ss_pred EEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE----ecC----CCChhHHHHhhhhhcCCCC--
Q psy6712 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN----YDL----PNNRELYIHRIGRSGRFGR-- 165 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~----~~~----p~s~~~~~q~~GR~gR~g~-- 165 (210)
+..+||+|++.+|..+++.|++|.+++||||+++++|+|+|++++||+ ||. |.++.+|.||+|||||.|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 788999999999999999999999999999999999999999999999 998 8999999999999999997
Q ss_pred ceeEEEEeccC-cHHHHHH
Q psy6712 166 KGVAISFVKSD-DIRILRD 183 (210)
Q Consensus 166 ~g~~~~~~~~~-~~~~~~~ 183 (210)
.|.|++++.+. +...+.+
T Consensus 489 ~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 489 RGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SEEEEEEECSCCCHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHH
Confidence 59999999865 4444433
No 47
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=7.9e-24 Score=183.73 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=135.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCC-ch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPP-AT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~-~~ 80 (210)
|++|..++||.+.. ...-....+++++|++.+. ..+.++++|+||+|++.+.++...+..++..++. ..
T Consensus 203 g~~v~lltG~~~~i--v~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i 272 (677)
T 3rc3_A 203 GVPCDLVTGEERVT--VQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEV 272 (677)
T ss_dssp TCCEEEECSSCEEC--CSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCeeEE--ecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccce
Confidence 67888899987661 0000113678888886543 2467799999999999887777666666655441 11
Q ss_pred h-----------------------------------------------------------HHHHHHHHHhcCceEEEecC
Q psy6712 81 Q-----------------------------------------------------------VDWLTEKMREANFTVSSMHG 101 (210)
Q Consensus 81 ~-----------------------------------------------------------~~~l~~~l~~~~~~~~~~~~ 101 (210)
+ ++.+++.|.+.++.+..+||
T Consensus 273 ~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 273 HLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp EEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred EEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 1 88899999999999999999
Q ss_pred CCCHhHHHHHHHHHhc--CCCcEEEEecCccccCCCCCCcEEEEecC--------------CCChhHHHHhhhhhcCCCC
Q psy6712 102 DMPQKERDGIMKEFRS--GTSRVLITTDVWARGIDVQQVSLVINYDL--------------PNNRELYIHRIGRSGRFGR 165 (210)
Q Consensus 102 ~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~g~d~~~~~~vi~~~~--------------p~s~~~~~q~~GR~gR~g~ 165 (210)
+|++++|.++++.|++ |+.+|||||+++++|+|+ ++++||++++ |.+..+|.||+|||||.|.
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 9999999998 7899999999999999986
Q ss_pred c---eeEEEEeccCcHHHHHHHHHH
Q psy6712 166 K---GVAISFVKSDDIRILRDIEQY 187 (210)
Q Consensus 166 ~---g~~~~~~~~~~~~~~~~~~~~ 187 (210)
. |.|+.+. +.+...++++.+.
T Consensus 432 ~g~~G~v~~l~-~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 432 RFKEGEVTTMN-HEDLSLLKEILKR 455 (677)
T ss_dssp SCSSEEEEESS-TTHHHHHHHHHHS
T ss_pred CCCCEEEEEEe-cchHHHHHHHHhc
Confidence 4 5555554 4444444444443
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=1e-23 Score=192.76 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=134.5
Q ss_pred CceEEEEEcCcchHHH---HHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHH----
Q psy6712 2 NVQCHACIGGTNLSED---LRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVY---- 73 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~---~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~---- 73 (210)
++++..++|+.+..++ +..+.. .++|+|+||+.+ ++.+.+++++++|+||+|++... ....+..+.
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiDEaH~~g~~-~~~~l~~l~~~~~ 753 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRFGVR-HKERIKAMRANVD 753 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGSCHH-HHHHHHHHHTTSE
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEechHhcChH-HHHHHHHhcCCCC
Confidence 5788888887665543 445555 489999999754 34567899999999999996321 111111111
Q ss_pred ---------------------------------------------------------------hhCCCchhHHHHHHHHH
Q psy6712 74 ---------------------------------------------------------------RYLPPATQVDWLTEKMR 90 (210)
Q Consensus 74 ---------------------------------------------------------------~~~~~~~~~~~l~~~l~ 90 (210)
.+++....++.+++.|+
T Consensus 754 vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~ 833 (1151)
T 2eyq_A 754 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 833 (1151)
T ss_dssp EEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHH
T ss_pred EEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH
Confidence 01222222788888888
Q ss_pred hc--CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC-CCChhHHHHhhhhhcCCCCce
Q psy6712 91 EA--NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL-PNNRELYIHRIGRSGRFGRKG 167 (210)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~-p~s~~~~~q~~GR~gR~g~~g 167 (210)
+. +.++..+||+|+..+|.+++++|++|+++|||||+++++|+|+|++++||+++. +++..+|.||+||+||.|+.|
T Consensus 834 ~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g 913 (1151)
T 2eyq_A 834 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 913 (1151)
T ss_dssp HHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE
T ss_pred HhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce
Confidence 76 789999999999999999999999999999999999999999999999999988 579999999999999999999
Q ss_pred eEEEEeccC
Q psy6712 168 VAISFVKSD 176 (210)
Q Consensus 168 ~~~~~~~~~ 176 (210)
.|++++.+.
T Consensus 914 ~~~ll~~~~ 922 (1151)
T 2eyq_A 914 YAWLLTPHP 922 (1151)
T ss_dssp EEEEEECCG
T ss_pred EEEEEECCc
Confidence 999998764
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.91 E-value=2.9e-24 Score=182.11 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe-cCccccCCCCCCcEEEEecCCCChhHHHHhhhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT-DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 160 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~ 160 (210)
++.+.+.|.+.+.++..+||+|+..+|.++++.|++|+.++|||| +++++|+|+|++++||++++|+++..|.|++||+
T Consensus 360 ~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~ 439 (510)
T 2oca_A 360 GKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRV 439 (510)
T ss_dssp HHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcc
Confidence 666888888887899999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEe
Q psy6712 161 GRFGRKGVAISFV 173 (210)
Q Consensus 161 gR~g~~g~~~~~~ 173 (210)
||.|..+.++.++
T Consensus 440 gR~g~~~~~v~i~ 452 (510)
T 2oca_A 440 LRKHGSKTIATVW 452 (510)
T ss_dssp HTTTCCCCCCEEE
T ss_pred cccCCCCceEEEE
Confidence 9999876444443
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.90 E-value=6.8e-24 Score=199.21 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=80.6
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE----e------cCCCChhHHHHhhhhhcCCC
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN----Y------DLPNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~----~------~~p~s~~~~~q~~GR~gR~g 164 (210)
.++++|++|++.+|..+.+.|++|.+++||||+.+++|+|+|...+||. | ..|.++.+|.||+|||||.|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g 1294 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPL 1294 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTT
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCC
Confidence 5899999999999999999999999999999999999999999999983 3 34678999999999999998
Q ss_pred C--ceeEEEEeccCcHHHHHHH
Q psy6712 165 R--KGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 165 ~--~g~~~~~~~~~~~~~~~~~ 184 (210)
. .|.+++++.+.+...++++
T Consensus 1295 ~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1295 QDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCceEEEEEecchHHHHHHHH
Confidence 7 6999999998887665543
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=6.5e-25 Score=183.04 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN------------------ 143 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~------------------ 143 (210)
++.+++.|++.++++..+|| ++|.+++++|++|+.+|||||+++++|+|+| +++||+
T Consensus 190 a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi 264 (440)
T 1yks_A 190 ANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAI 264 (440)
T ss_dssp HHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceee
Confidence 89999999999999999999 4688999999999999999999999999999 999986
Q ss_pred -ecCCCChhHHHHhhhhhcCC-CCceeEEEEe---ccCcHHHHHHHHHHhcCcccccc
Q psy6712 144 -YDLPNNRELYIHRIGRSGRF-GRKGVAISFV---KSDDIRILRDIEQYYSTQIDEMP 196 (210)
Q Consensus 144 -~~~p~s~~~~~q~~GR~gR~-g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 196 (210)
++.|.+..+|.||+||+||. |..|.|++++ ++.+...++.+++.+.....+++
T Consensus 265 ~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 265 KGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred ccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 89999999999999999998 6799999996 56777778888877644444443
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=7.8e-23 Score=184.59 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=73.6
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCC---------CChhHHHHhhhhhcCCC-
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP---------NNRELYIHRIGRSGRFG- 164 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p---------~s~~~~~q~~GR~gR~g- 164 (210)
.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++.+ |+++.| .+..+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 4789999999999999999999999999999999999999999554 444444 49999999999999998
Q ss_pred -CceeEEEEec--cCcHHHHHHH
Q psy6712 165 -RKGVAISFVK--SDDIRILRDI 184 (210)
Q Consensus 165 -~~g~~~~~~~--~~~~~~~~~~ 184 (210)
..|.|++++. ..+...++.+
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHH
Confidence 4688888883 2344444433
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.89 E-value=3.8e-23 Score=194.21 Aligned_cols=90 Identities=20% Similarity=0.325 Sum_probs=79.6
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE----ecC------CCChhHHHHhhhhhcCCC
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN----YDL------PNNRELYIHRIGRSGRFG 164 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~----~~~------p~s~~~~~q~~GR~gR~g 164 (210)
.++++||+|+.++|..+.+.|++|.+++||||+.+++|+|+|..++||. |++ |.++.+|.||+|||||.|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQ 459 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTT
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCC
Confidence 5889999999999999999999999999999999999999999999985 553 568999999999999987
Q ss_pred C--ceeEEEEeccCcHHHHHHH
Q psy6712 165 R--KGVAISFVKSDDIRILRDI 184 (210)
Q Consensus 165 ~--~g~~~~~~~~~~~~~~~~~ 184 (210)
. .|.+++++...+...+..+
T Consensus 460 ~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 460 YDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCccEEEEEecchhHHHHHHH
Confidence 5 6999999988776554443
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.88 E-value=1.7e-22 Score=174.38 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=125.7
Q ss_pred cEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCC----------------------------
Q psy6712 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLP---------------------------- 77 (210)
Q Consensus 26 ~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~---------------------------- 77 (210)
.+-+.|.+.+...+... ..+++++++|+||||++ +.++...+..+...++
T Consensus 256 ~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~ 333 (618)
T 2whx_A 256 IVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIE 333 (618)
T ss_dssp CEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEE
T ss_pred eEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCcee
Confidence 34455656555544433 34789999999999998 5555555554444321
Q ss_pred ------------------------------CchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 78 ------------------------------PATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 78 ------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
....++.+++.|++.++++..+||+ +|.++++.|++|+.+|||||+
T Consensus 334 ~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 334 DIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp EEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECG
T ss_pred eecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECc
Confidence 1111899999999999999999985 788899999999999999999
Q ss_pred CccccCCCCCCcEE--------------------EEecCCCChhHHHHhhhhhcCCCC-ceeEEEEec---cCcHHHHHH
Q psy6712 128 VWARGIDVQQVSLV--------------------INYDLPNNRELYIHRIGRSGRFGR-KGVAISFVK---SDDIRILRD 183 (210)
Q Consensus 128 ~~~~g~d~~~~~~v--------------------i~~~~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~---~~~~~~~~~ 183 (210)
++++|+|+| +++| |++++|.+..+|+||+||+||.|. .|.+++|+. +.+...++.
T Consensus 410 v~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~ 488 (618)
T 2whx_A 410 ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHW 488 (618)
T ss_dssp GGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHH
T ss_pred HHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHH
Confidence 999999997 8888 788889999999999999999965 899999997 777778888
Q ss_pred HHHHhcC
Q psy6712 184 IEQYYST 190 (210)
Q Consensus 184 ~~~~~~~ 190 (210)
+++.+..
T Consensus 489 le~~i~l 495 (618)
T 2whx_A 489 TEAKMLL 495 (618)
T ss_dssp HHHHHHH
T ss_pred HHhHhcc
Confidence 8887644
No 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=4.4e-22 Score=166.47 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=116.5
Q ss_pred CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHH-------------------------------
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDV------------------------------- 72 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i------------------------------- 72 (210)
+..|.++|++.+...+.+. ..+++++++|+||||++ +..+......+
T Consensus 87 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 164 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSP 164 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSC
T ss_pred CceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhhcCCCc
Confidence 4468899999988877654 55789999999999976 22211111111
Q ss_pred ---------------------------HhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEE
Q psy6712 73 ---------------------------YRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLIT 125 (210)
Q Consensus 73 ---------------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 125 (210)
+.|++....++.+++.|++.++.+..+|+++. .++++.|++|+.+||||
T Consensus 165 ~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVa 240 (451)
T 2jlq_A 165 IEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVT 240 (451)
T ss_dssp EEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEE
T ss_pred eEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEE
Confidence 11222222289999999999999999999864 57899999999999999
Q ss_pred ecCccccCCCCCCcEEEEec--------------------CCCChhHHHHhhhhhcCCCC-ceeEEEEecc
Q psy6712 126 TDVWARGIDVQQVSLVINYD--------------------LPNNRELYIHRIGRSGRFGR-KGVAISFVKS 175 (210)
Q Consensus 126 T~~~~~g~d~~~~~~vi~~~--------------------~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~~ 175 (210)
|+++++|+|+|+ ++||+|| .|.+..+|+||+||+||.|. .|.++++...
T Consensus 241 T~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 241 TDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 999999999999 9999998 99999999999999999998 7888888754
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.87 E-value=1.4e-22 Score=178.81 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=122.8
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH-Hhccc-hHHHHHHHHh--------------------------
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE-MLNKG-FKEQIYDVYR-------------------------- 74 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~-l~~~~-~~~~~~~i~~-------------------------- 74 (210)
.+.+|+++|||++.+.+... ..+.+++++|+||+|. .++.. ....+..+..
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 36789999999999877664 4589999999999996 44321 1111111111
Q ss_pred ----------------------------------------------hCCCchhHHHHHHHHHh-----------cCceEE
Q psy6712 75 ----------------------------------------------YLPPATQVDWLTEKMRE-----------ANFTVS 97 (210)
Q Consensus 75 ----------------------------------------------~~~~~~~~~~l~~~l~~-----------~~~~~~ 97 (210)
|++....++.+++.|.+ .++.+.
T Consensus 263 ~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~ 342 (773)
T 2xau_A 263 PLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVY 342 (773)
T ss_dssp CEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred CcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 12222226677777764 578999
Q ss_pred EecCCCCHhHHHHHHHHHh-----cCCCcEEEEecCccccCCCCCCcEEEEecC------------------CCChhHHH
Q psy6712 98 SMHGDMPQKERDGIMKEFR-----SGTSRVLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYI 154 (210)
Q Consensus 98 ~~~~~~~~~~r~~~~~~f~-----~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~------------------p~s~~~~~ 154 (210)
.+||+|+.++|..+++.|. +|+.+|||||+++++|+|+|++++||++++ |.|..+|.
T Consensus 343 ~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~ 422 (773)
T 2xau_A 343 PLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQ 422 (773)
T ss_dssp EECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHH
T ss_pred EeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHH
Confidence 9999999999999999999 999999999999999999999999999877 88999999
Q ss_pred HhhhhhcCCCCceeEEEEeccCcH
Q psy6712 155 HRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 155 q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
||+|||||. ..|.|+.++++.+.
T Consensus 423 QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 423 QRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHGGGSS-SSEEEEESSCHHHH
T ss_pred hhccccCCC-CCCEEEEEecHHHh
Confidence 999999999 88999999976543
No 57
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=2.8e-23 Score=180.55 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEE------------------
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN------------------ 143 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~------------------ 143 (210)
++.+++.|++.++++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 423 ~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ 497 (673)
T 2wv9_A 423 SNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVI 497 (673)
T ss_dssp HHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEE
T ss_pred HHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccce
Confidence 899999999999999999994 789999999999999999999999999999 999998
Q ss_pred --ecCCCChhHHHHhhhhhcCC-CCceeEEEEe---ccCcHHHHHHHHHHh
Q psy6712 144 --YDLPNNRELYIHRIGRSGRF-GRKGVAISFV---KSDDIRILRDIEQYY 188 (210)
Q Consensus 144 --~~~p~s~~~~~q~~GR~gR~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 188 (210)
|++|.+..+|.||+||+||. |+.|.|++|+ .+.+...++.++..+
T Consensus 498 ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 498 LSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999999 7899999996 466666666666655
No 58
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.87 E-value=6.3e-23 Score=171.90 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=112.1
Q ss_pred cEEEEChHHHHHHHHhcCccCCCccEEEechhhH-----HhccchHHHHHH-----------------------------
Q psy6712 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE-----MLNKGFKEQIYD----------------------------- 71 (210)
Q Consensus 26 ~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~-----l~~~~~~~~~~~----------------------------- 71 (210)
-+.+.|.+.+...+.+. ..+++++++|+||||. ++..++......
T Consensus 91 ~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~~~pi~~ 169 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHD 169 (459)
T ss_dssp SEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEE
T ss_pred EEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccCCCCeEE
Confidence 35566766665544433 4578999999999998 555554433221
Q ss_pred -----------------------HHhhCCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 72 -----------------------VYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 72 -----------------------i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++.|++....++.+++.|+..++.+..+|++ +|.+++++|++|+.+|||||++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v 245 (459)
T 2z83_A 170 LQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDI 245 (459)
T ss_dssp EECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSC
T ss_pred ecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECCh
Confidence 1112222222899999999999999999995 6778899999999999999999
Q ss_pred ccccCCCCCCcEEEE--------------------ecCCCChhHHHHhhhhhcCCCC-ceeEEEEeccC
Q psy6712 129 WARGIDVQQVSLVIN--------------------YDLPNNRELYIHRIGRSGRFGR-KGVAISFVKSD 176 (210)
Q Consensus 129 ~~~g~d~~~~~~vi~--------------------~~~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~~~ 176 (210)
+++|+|+|+ ++||+ |++|.+..+|+||+||+||.|. .|.+++|+.+.
T Consensus 246 ~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 246 SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999 99999 7799999999999999999997 89999999874
No 59
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=1.1e-21 Score=170.62 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC-----CCChhHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL-----PNNRELYIHR 156 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~-----p~s~~~~~q~ 156 (210)
++.+++.|.+.|+++..+||+|++.+|.+++++|++|+++|||||+.+++|+|+|++++||++|. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hhhhcCCCCceeEEEEeccCcHHHHHH---------HHHHhcCccccccCCccc
Q psy6712 157 IGRSGRFGRKGVAISFVKSDDIRILRD---------IEQYYSTQIDEMPMNGKR 201 (210)
Q Consensus 157 ~GR~gR~g~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 201 (210)
+||+||. ..|.+++++++.+..+.+. +++.++......|.+..+
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~ 590 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINK 590 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhh
Confidence 9999998 7899999998876554443 334455555555554444
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.86 E-value=1.1e-21 Score=164.85 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=73.7
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc-e--eEEE
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK-G--VAIS 171 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~-g--~~~~ 171 (210)
.+..+||+++..+|.+++++|++|+.++||+|+++++|+|+|++++||++++|+++..|.||+||+||.|.. + .++.
T Consensus 370 ~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 370 LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 366799999999999999999999999999999999999999999999999999999999999999999854 3 4445
Q ss_pred EeccC
Q psy6712 172 FVKSD 176 (210)
Q Consensus 172 ~~~~~ 176 (210)
++...
T Consensus 450 lv~~~ 454 (472)
T 2fwr_A 450 LISRG 454 (472)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66543
No 61
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=4.3e-21 Score=167.05 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecC-----CCChhHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL-----PNNRELYIHR 156 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~-----p~s~~~~~q~ 156 (210)
++.+++.|.+.++++..+||+|++.+|.+++++|+.|+++|||||+.+++|+|+|++++||++|. |.+..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hhhhcCCCCceeEEEEeccCcHHHHHHHH
Q psy6712 157 IGRSGRFGRKGVAISFVKSDDIRILRDIE 185 (210)
Q Consensus 157 ~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 185 (210)
+||+||. ..|.+++++++.+....+.++
T Consensus 532 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 532 IGRAARN-ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HGGGTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HCccCcC-CCCEEEEEEcCCCHHHHHHHH
Confidence 9999998 479999999887665444433
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.84 E-value=3.9e-20 Score=153.82 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=109.4
Q ss_pred CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhh-----------------------------
Q psy6712 25 QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRY----------------------------- 75 (210)
Q Consensus 25 ~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~----------------------------- 75 (210)
.-+.+.|.+.+...+.. ...+++++++|+||+|++ +.++......+...
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i 148 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPI 148 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCC
T ss_pred ceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCce
Confidence 34566788877665555 556899999999999997 32222222222211
Q ss_pred -----------------------------CCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe
Q psy6712 76 -----------------------------LPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT 126 (210)
Q Consensus 76 -----------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T 126 (210)
++....++.+++.|++.++++..+||+ +|.+++++|++|+.+|||||
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 149 IDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp EEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEEC
T ss_pred eeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEEC
Confidence 111111889999999999999999997 57889999999999999999
Q ss_pred cCccccCCCCCCcE-----------------EEEecCCCChhHHHHhhhhhcCCCC-ceeEEEEec
Q psy6712 127 DVWARGIDVQQVSL-----------------VINYDLPNNRELYIHRIGRSGRFGR-KGVAISFVK 174 (210)
Q Consensus 127 ~~~~~g~d~~~~~~-----------------vi~~~~p~s~~~~~q~~GR~gR~g~-~g~~~~~~~ 174 (210)
+++++|+|+| +.+ +|+++.|.+..+|.||+||+||.|. .+.++++..
T Consensus 225 ~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 225 DISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp GGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred chHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 9999999999 554 6788999999999999999999985 555666653
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.83 E-value=2e-20 Score=161.26 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCc--------eEEEecCCCCHhHHHHHHHHHhcCCCc---EEEEecCccccCCCCCCcEEEEecCCCCh
Q psy6712 82 VDWLTEKMREANF--------TVSSMHGDMPQKERDGIMKEFRSGTSR---VLITTDVWARGIDVQQVSLVINYDLPNNR 150 (210)
Q Consensus 82 ~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~g~d~~~~~~vi~~~~p~s~ 150 (210)
++.+++.|.+.+. .+..+||.++. +|++++++|++|+.+ |+|||+++++|+|+|++++||++++|+|.
T Consensus 452 a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~ 530 (590)
T 3h1t_A 452 ADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSM 530 (590)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCH
T ss_pred HHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCCh
Confidence 6666666655433 27788999864 799999999998876 88999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCC
Q psy6712 151 ELYIHRIGRSGRFGR 165 (210)
Q Consensus 151 ~~~~q~~GR~gR~g~ 165 (210)
..|.||+||+||.+.
T Consensus 531 ~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 531 SEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHTTSCCCBG
T ss_pred HHHHHHHhhhcccCc
Confidence 999999999999875
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=2.2e-19 Score=151.75 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=77.8
Q ss_pred HHHHHHHHHhc-CceEEEecCCCCHhHHHHHHHHHhcC-CCc-EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREA-NFTVSSMHGDMPQKERDGIMKEFRSG-TSR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
++.+.+.|... ++.+..+||+|+..+|.+++++|+++ +.+ +|++|+++++|+|+|.+++||++|+|+++..|.|++|
T Consensus 354 ~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~g 433 (500)
T 1z63_A 354 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 433 (500)
T ss_dssp HHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHH
Confidence 45555666554 88899999999999999999999998 555 7899999999999999999999999999999999999
Q ss_pred hhcCCCCceeE--EEEeccC
Q psy6712 159 RSGRFGRKGVA--ISFVKSD 176 (210)
Q Consensus 159 R~gR~g~~g~~--~~~~~~~ 176 (210)
|++|.|+.+.+ +.++...
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETT
T ss_pred HHHHcCCCCeeEEEEEEeCC
Confidence 99999986554 5555554
No 65
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-18 Score=154.02 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCc---EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
++.+.+.|...++++..+||+++..+|..++++|++++.. +|++|.+++.|+|++.+++||+||+||++..+.|++|
T Consensus 585 ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~g 664 (800)
T 3mwy_W 585 LDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMA 664 (800)
T ss_dssp HHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHH
Confidence 6667777777899999999999999999999999986654 8999999999999999999999999999999999999
Q ss_pred hhcCCCCcee--EEEEeccC--cHHHHHHHHHHh
Q psy6712 159 RSGRFGRKGV--AISFVKSD--DIRILRDIEQYY 188 (210)
Q Consensus 159 R~gR~g~~g~--~~~~~~~~--~~~~~~~~~~~~ 188 (210)
|++|.|+... ++-|+... |...++..++.+
T Consensus 665 R~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 665 RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp TTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred HHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999998544 45566554 455555554443
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.78 E-value=9.6e-18 Score=144.20 Aligned_cols=95 Identities=23% Similarity=0.348 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCCCC--------CCcEEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQ--------QVSLVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~--------~~~~vi~~~~p~s~~~~ 153 (210)
++.+++.|.+.|+++..+||++...++..+..+++.| .|+|||++++||+|++ +..+||+++.|.+...|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 8889999999999999999996666666566666655 6999999999999997 55699999999999999
Q ss_pred HHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 154 IHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 154 ~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
.||+||+||.|.+|.+++|++..|.
T Consensus 565 ~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 565 NQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHhhCccccCCCCeeEEEEechhHH
Confidence 9999999999999999999998763
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=2.1e-17 Score=143.63 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCc---EEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 158 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~G 158 (210)
++.+.+.|...++.+..+||+|+..+|.+++++|++++.. +|++|.++++|+|++.+++||+||+||++..+.|++|
T Consensus 429 ~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~g 508 (644)
T 1z3i_X 429 LDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508 (644)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHH
Confidence 4555666666788999999999999999999999998764 8999999999999999999999999999999999999
Q ss_pred hhcCCCCcee--EEEEeccC--cHHHHHHH
Q psy6712 159 RSGRFGRKGV--AISFVKSD--DIRILRDI 184 (210)
Q Consensus 159 R~gR~g~~g~--~~~~~~~~--~~~~~~~~ 184 (210)
|++|.|+... ++-++... |...++..
T Consensus 509 R~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~ 538 (644)
T 1z3i_X 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 538 (644)
T ss_dssp TSSSTTCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred hhhhcCCCCceEEEEEEECCCHHHHHHHHH
Confidence 9999998654 45556554 33344433
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.74 E-value=7.1e-18 Score=152.31 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=96.8
Q ss_pred hCCCchhHHHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCC--CcEEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 75 YLPPATQVDWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGT--SRVLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 75 ~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
|+.....++.+.+.|.+ .|+++..+||+|+..+|..+++.|++|+ +++||||+++++|+|+|++++||+||+|+++.
T Consensus 509 F~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~ 588 (968)
T 3dmq_A 509 ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPD 588 (968)
T ss_dssp ECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHH
T ss_pred EeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHH
Confidence 34444558999999985 5999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCceeEEEEeccCcHHHHHHHHHHh
Q psy6712 152 LYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYY 188 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 188 (210)
.|.|++||+||.|+.+.++++....+....+.+.+.+
T Consensus 589 ~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 589 LLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 9999999999999988766665433333334455555
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=3.3e-18 Score=133.78 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=76.0
Q ss_pred hCCCchhHHHHHHHHHhc-CceEEEecCCCCHhHHHHHHHHHhcC-CCc-EEEEecCccccCCCCCCcEEEEecCCCChh
Q psy6712 75 YLPPATQVDWLTEKMREA-NFTVSSMHGDMPQKERDGIMKEFRSG-TSR-VLITTDVWARGIDVQQVSLVINYDLPNNRE 151 (210)
Q Consensus 75 ~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~ 151 (210)
|+.....++.+.+.|... |+.+..+||+++..+|..++++|+++ +.+ +|++|+++++|+|++.+++||+||+||++.
T Consensus 118 Fs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~ 197 (271)
T 1z5z_A 118 FTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA 197 (271)
T ss_dssp EESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTT
T ss_pred EeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChh
Confidence 333444488899999875 99999999999999999999999998 677 789999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCcee--EEEEeccC
Q psy6712 152 LYIHRIGRSGRFGRKGV--AISFVKSD 176 (210)
Q Consensus 152 ~~~q~~GR~gR~g~~g~--~~~~~~~~ 176 (210)
.|.|++||++|.|+.+. ++.++...
T Consensus 198 ~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 198 VEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TC--------------CCEEEEEEETT
T ss_pred HHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999998655 45566554
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.60 E-value=3.6e-14 Score=128.25 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCCcEEEEecCccccCCCCCCcEEEEecCCCChhHHHHhhhhhcCCCCc----eeEEEEecc
Q psy6712 107 ERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK----GVAISFVKS 175 (210)
Q Consensus 107 ~r~~~~~~f~~g~~~ilv~T~~~~~g~d~~~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~----g~~~~~~~~ 175 (210)
.|..++++|++|++++||+|+++.+|+|.|.+ .++++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 37889999999999999999999999999999 678899999999999999999998753 777777753
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.48 E-value=1.3e-12 Score=114.65 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=49.4
Q ss_pred CCceEEEEEcCcchHHHHHHhcCCCcEEEEChHHH-HHHHHhcC------ccCC---CccEEEechhhHHh
Q psy6712 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRRRV------LRTR---NIKMLVLDEADEML 61 (210)
Q Consensus 1 ~~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l-~~~l~~~~------~~~~---~~~~lviDE~~~l~ 61 (210)
+|++|.+++||.+.+. +....++||+||||+++ .++++.+. +.++ .+.++|+||+|.|+
T Consensus 147 lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 5899999999988543 33344799999999999 88888764 5677 89999999999997
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.39 E-value=1.1e-12 Score=100.71 Aligned_cols=99 Identities=28% Similarity=0.509 Sum_probs=84.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+.++++|+|+||+++.+++.++...+++++++|+||||++.++++...+..++..++.
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~--- 206 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP--- 206 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS---
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc---
Confidence 67899999999999999999899999999999999999998889999999999999999999999999999877643
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEF 115 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 115 (210)
+..+..+.+.++..-+. ..+.|
T Consensus 207 -----------~~q~~~~SAT~~~~~~~-~~~~~ 228 (242)
T 3fe2_A 207 -----------DRQTLMWSATWPKEVRQ-LAEDF 228 (242)
T ss_dssp -----------SCEEEEEESCCCHHHHH-HHHHH
T ss_pred -----------cceEEEEEeecCHHHHH-HHHHH
Confidence 34677788888776544 33444
No 73
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.32 E-value=3.7e-12 Score=96.75 Aligned_cols=96 Identities=26% Similarity=0.426 Sum_probs=76.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+.++++|+|+||+++.+++..+...+++++++|+||||++.++++...+..++..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--- 197 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP--- 197 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS---
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc---
Confidence 67889999999999999999999999999999999999988888999999999999999999999998888866542
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGI 111 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 111 (210)
+..+..+.+.++..-+...
T Consensus 198 -----------~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 198 -----------DRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp -----------SCEEEEEESCCCHHHHHHH
T ss_pred -----------CCeEEEEEeeCCHHHHHHH
Confidence 3467778888877655433
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.29 E-value=5.8e-11 Score=88.53 Aligned_cols=99 Identities=34% Similarity=0.596 Sum_probs=81.4
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+..++...+.++++|+|+||+++.+.+.++...+++++++|+||||++.+.++...+..++..++.
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--- 176 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--- 176 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT---
T ss_pred CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc---
Confidence 57889999999999888888889999999999999999988888999999999999999998888888777765542
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEF 115 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 115 (210)
+..+..+.+.++...+. .++.|
T Consensus 177 -----------~~~~l~~SAT~~~~~~~-~~~~~ 198 (206)
T 1vec_A 177 -----------NRQILLYSATFPLSVQK-FMNSH 198 (206)
T ss_dssp -----------TCEEEEEESCCCHHHHH-HHHHH
T ss_pred -----------cceEEEEEeeCCHHHHH-HHHHH
Confidence 35677787877765433 44444
No 75
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=96.21 Aligned_cols=96 Identities=28% Similarity=0.486 Sum_probs=80.2
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++++..++||.....+...+..+++|+|+||+++.+++... .+.+++++++|+||||++.++++...+..++..++.
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~-- 231 (262)
T 3ly5_A 154 VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-- 231 (262)
T ss_dssp CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--
Confidence 57789999999999999888889999999999999988775 477899999999999999999999998888877653
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHH
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGI 111 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 111 (210)
...+..+.+.++.+-+...
T Consensus 232 ------------~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 232 ------------RRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp ------------SSEEEEECSSCCHHHHHHH
T ss_pred ------------CCeEEEEEecCCHHHHHHH
Confidence 3467777777776655433
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=94.25 Aligned_cols=100 Identities=25% Similarity=0.446 Sum_probs=82.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++++..++||.+...+...+.++++|+|+||+++.+.+.+ +.+.+++++++|+||||++.+.++...+..++..++.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~-- 216 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR-- 216 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS--
T ss_pred CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC--
Confidence 6789999999999888888889999999999999998887 5678899999999999999999999998888876642
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
+..+..+.+.++..-+. ..+.|.
T Consensus 217 ------------~~~~l~~SAT~~~~v~~-~~~~~l 239 (249)
T 3ber_A 217 ------------DRKTFLFSATMTKKVQK-LQRAAL 239 (249)
T ss_dssp ------------SSEEEEEESSCCHHHHH-HHHHHC
T ss_pred ------------CCeEEEEeccCCHHHHH-HHHHHC
Confidence 34677788888765444 444443
No 77
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.25 E-value=2.3e-11 Score=93.78 Aligned_cols=104 Identities=26% Similarity=0.463 Sum_probs=83.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+..+++|+|+||+++.+++.++.+.+++++++|+||||++.++++...+..++..+....
T Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~- 206 (253)
T 1wrb_A 128 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS- 206 (253)
T ss_dssp SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC-
T ss_pred CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC-
Confidence 5778999999999999999988999999999999999999888899999999999999999999999888887432111
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
..+..+..+.+.++.+-+ +..+.|.
T Consensus 207 ---------~~~~q~l~~SAT~~~~~~-~~~~~~l 231 (253)
T 1wrb_A 207 ---------GINRQTLMFSATFPKEIQ-KLAADFL 231 (253)
T ss_dssp ---------GGGCEEEEEESSCCHHHH-HHHHHHC
T ss_pred ---------CCCcEEEEEEEeCCHHHH-HHHHHHc
Confidence 124567778888776543 3444443
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.23 E-value=7.8e-11 Score=90.03 Aligned_cols=101 Identities=49% Similarity=0.895 Sum_probs=70.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCC-CcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~-~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++++..++||.+...+...+..+ ++|+|+||+++.+.+.++...+++++++|+||||++.++++...+..++..++
T Consensus 126 ~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~--- 202 (237)
T 3bor_A 126 GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN--- 202 (237)
T ss_dssp TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC---
T ss_pred CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC---
Confidence 57788999999988888888765 89999999999999998888899999999999999999888888877775543
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS 117 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 117 (210)
.+..+..+.+.++..-+. ..+.|..
T Consensus 203 -----------~~~~~i~~SAT~~~~~~~-~~~~~l~ 227 (237)
T 3bor_A 203 -----------TSIQVVLLSATMPTDVLE-VTKKFMR 227 (237)
T ss_dssp -----------TTCEEEEECSSCCHHHHH-HHHHHCS
T ss_pred -----------CCCeEEEEEEecCHHHHH-HHHHHCC
Confidence 245778888888765444 4445543
No 79
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.23 E-value=1.2e-11 Score=93.36 Aligned_cols=100 Identities=32% Similarity=0.594 Sum_probs=81.2
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+...+...+..+++|+|+||+++.+.+.++...+++++++|+||||++.++++...+..++..++
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~---- 179 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP---- 179 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC----
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC----
Confidence 5788999999998887777777899999999999999998888899999999999999999898888888776653
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
.+..+..+.+.++.+-+. ..+.|.
T Consensus 180 ----------~~~~~l~~SAT~~~~~~~-~~~~~~ 203 (219)
T 1q0u_A 180 ----------KDLQMLVFSATIPEKLKP-FLKKYM 203 (219)
T ss_dssp ----------TTCEEEEEESCCCGGGHH-HHHHHC
T ss_pred ----------cccEEEEEecCCCHHHHH-HHHHHc
Confidence 245677788887765443 444443
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.21 E-value=3.9e-11 Score=91.28 Aligned_cols=90 Identities=37% Similarity=0.682 Sum_probs=74.5
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccc-hHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG-FKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~-~~~~~~~i~~~~~~~~ 80 (210)
++++..++||.+..++...+ ++++|+|+||+++.+++..+.+.+++++++|+||||++.+++ +...+..++..++.
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-- 197 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA-- 197 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS--
T ss_pred CceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC--
Confidence 67899999999887776665 478999999999999999888888999999999999999887 88888888766542
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHh
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQK 106 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~ 106 (210)
+..+..+.+.++.+
T Consensus 198 ------------~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 198 ------------SKQMLAVSATYPEF 211 (230)
T ss_dssp ------------SCEEEEEESCCCHH
T ss_pred ------------CCeEEEEEeccCHH
Confidence 34577777777655
No 81
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.20 E-value=4.9e-11 Score=88.97 Aligned_cols=99 Identities=29% Similarity=0.484 Sum_probs=80.2
Q ss_pred ceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchhH
Q psy6712 3 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 82 (210)
Q Consensus 3 i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~~ 82 (210)
+++..++||.+...+...+.++++|+|+||+++.+.+.++...+++++++|+||||++.+.++...+..++..++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~----- 173 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP----- 173 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC-----
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCC-----
Confidence 578889999998888888888999999999999999999888999999999999999999888888888775543
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
.+..+..+.+.++..- .+..+.|.
T Consensus 174 ---------~~~~~i~~SAT~~~~~-~~~~~~~~ 197 (207)
T 2gxq_A 174 ---------PSRQTLLFSATLPSWA-KRLAERYM 197 (207)
T ss_dssp ---------TTSEEEEECSSCCHHH-HHHHHHHC
T ss_pred ---------ccCeEEEEEEecCHHH-HHHHHHHc
Confidence 2346777777776543 33445553
No 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.14 E-value=1e-10 Score=88.38 Aligned_cols=99 Identities=48% Similarity=0.839 Sum_probs=70.9
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
++++..++||.+..++...+.+ ++|+|+||+++.+.+.++...+++++++|+||||++.++++...+..++..++
T Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~---- 184 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP---- 184 (224)
T ss_dssp CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC----
T ss_pred CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC----
Confidence 6788999999988877776654 89999999999999999888899999999999999999888888777775543
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
.+..+..+.+.++..-+ +..+.|.
T Consensus 185 ----------~~~~~i~lSAT~~~~~~-~~~~~~~ 208 (224)
T 1qde_A 185 ----------PTTQVVLLSATMPNDVL-EVTTKFM 208 (224)
T ss_dssp ----------TTCEEEEEESSCCHHHH-HHHHHHC
T ss_pred ----------ccCeEEEEEeecCHHHH-HHHHHHC
Confidence 23467778888776543 3445554
No 83
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.14 E-value=1.8e-10 Score=87.73 Aligned_cols=93 Identities=25% Similarity=0.489 Sum_probs=73.7
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhc-CccCCCccEEEechhhHHhccchHHHHHHHHhhCCCch
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRR-VLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 80 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~-~~~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~ 80 (210)
++++..++||.+...+...+ .+++|+|+||+++.+.+... ...+++++++|+||||++.++++...+..++..++.
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~-- 201 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK-- 201 (236)
T ss_dssp SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT--
T ss_pred CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC--
Confidence 57889999999888777666 57899999999999988775 577889999999999999999998888888876642
Q ss_pred hHHHHHHHHHhcCceEEEecCCCCHhHHH
Q psy6712 81 QVDWLTEKMREANFTVSSMHGDMPQKERD 109 (210)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 109 (210)
+..+..+.+.++..-+.
T Consensus 202 ------------~~~~l~~SAT~~~~~~~ 218 (236)
T 2pl3_A 202 ------------KRQTLLFSATQTKSVKD 218 (236)
T ss_dssp ------------TSEEEEEESSCCHHHHH
T ss_pred ------------CCeEEEEEeeCCHHHHH
Confidence 34677788887765443
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.11 E-value=2.3e-10 Score=86.28 Aligned_cols=93 Identities=29% Similarity=0.569 Sum_probs=74.1
Q ss_pred CceEEEEEcCcchHHHHHHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~ 79 (210)
++++..++||.+...+...+.+ .++|+|+||+++.+++.++.+.+++++++|+||||++.+ .++...+..++..++
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-- 188 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP-- 188 (220)
T ss_dssp TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC--
T ss_pred CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC--
Confidence 6789999999998888877765 579999999999999998888899999999999999987 466666666665443
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCCHhHH
Q psy6712 80 TQVDWLTEKMREANFTVSSMHGDMPQKER 108 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 108 (210)
.+..+..+.+.++..-+
T Consensus 189 ------------~~~~~i~~SAT~~~~~~ 205 (220)
T 1t6n_A 189 ------------HEKQVMMFSATLSKEIR 205 (220)
T ss_dssp ------------SSSEEEEEESCCCTTTH
T ss_pred ------------CcCeEEEEEeecCHHHH
Confidence 23467777777766533
No 85
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=91.49 Aligned_cols=91 Identities=26% Similarity=0.485 Sum_probs=71.6
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhc-cchHHHHHHHHhhCCCc
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPA 79 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~-~~~~~~~~~i~~~~~~~ 79 (210)
++++..++||.+...+ ...+++|+|+||+++.+++.+ +.+++++++++|+||||+|++ .++...+..++..++.
T Consensus 191 ~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~- 266 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR- 266 (300)
T ss_dssp TCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT-
T ss_pred CcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC-
Confidence 4678888888775432 245789999999999999976 667899999999999999998 6888888888877653
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCCHhHHH
Q psy6712 80 TQVDWLTEKMREANFTVSSMHGDMPQKERD 109 (210)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 109 (210)
+..+..+.+.++..-+.
T Consensus 267 -------------~~q~i~~SAT~~~~v~~ 283 (300)
T 3fmo_B 267 -------------NCQMLLFSATFEDSVWK 283 (300)
T ss_dssp -------------TCEEEEEESCCCHHHHH
T ss_pred -------------CCEEEEEeccCCHHHHH
Confidence 34677777777765444
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=82.08 Aligned_cols=101 Identities=14% Similarity=0.254 Sum_probs=70.4
Q ss_pred CceEEEEEcCcchHHHHH-HhcCCCcEEEEChHHHHHHHHhc--CccCCCccEEEechhhHHhcc---chHHHHHHHHhh
Q psy6712 2 NVQCHACIGGTNLSEDLR-KLDYGQHVVSGTPGRVFDMIRRR--VLRTRNIKMLVLDEADEMLNK---GFKEQIYDVYRY 75 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~-~l~~~~~Ili~Tp~~l~~~l~~~--~~~~~~~~~lviDE~~~l~~~---~~~~~~~~i~~~ 75 (210)
++++..++||.....+.. ....+++|+|+||+++.+++.+. .+.+++++++|+||||++.++ ++...+..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~ 205 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205 (245)
T ss_dssp CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH
T ss_pred CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh
Confidence 456666666655443332 22457899999999999999876 578899999999999999984 666666666543
Q ss_pred CCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHh
Q psy6712 76 LPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 76 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
+ ...+..+..+.+.++.+-+. ..+.+.
T Consensus 206 ~-------------~~~~~~~~~~SAT~~~~v~~-~~~~~l 232 (245)
T 3dkp_A 206 C-------------TSHKVRRAMFSATFAYDVEQ-WCKLNL 232 (245)
T ss_dssp C-------------CCTTCEEEEEESSCCHHHHH-HHHHHS
T ss_pred c-------------CCCCcEEEEEeccCCHHHHH-HHHHhC
Confidence 3 22356778888888765444 444443
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=76.14 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=44.2
Q ss_pred CceEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcC------ccCCCccEEEechhhHHhccchHHHH
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRV------LRTRNIKMLVLDEADEMLNKGFKEQI 69 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~------~~~~~~~~lviDE~~~l~~~~~~~~~ 69 (210)
++++..++|+.+...+...+..+++|+|+||+++...+.... ..+.+++++|+||||++.+.++...+
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 457778888877666666666678999999999999887743 56789999999999999866544443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=66.25 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=47.5
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHH-hccchH-HHHHHHHhhCCCchhHHHHHHHHHhcCceEEEec
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM-LNKGFK-EQIYDVYRYLPPATQVDWLTEKMREANFTVSSMH 100 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l-~~~~~~-~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 100 (210)
.+++|+|+||+++.+++.. .+++++++|+||||.+ ++.++. ..+..++... .+..+..+.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~---------------~~~~~il~S 215 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY---------------PEVRIVLMS 215 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC---------------TTSEEEEEE
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC---------------CCCeEEEEe
Confidence 3578999999999999876 4899999999999985 555544 2333333221 245677777
Q ss_pred CCCCHhH
Q psy6712 101 GDMPQKE 107 (210)
Q Consensus 101 ~~~~~~~ 107 (210)
+.++.+.
T Consensus 216 AT~~~~~ 222 (235)
T 3llm_A 216 ATIDTSM 222 (235)
T ss_dssp CSSCCHH
T ss_pred cCCCHHH
Confidence 7777654
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.67 E-value=4.5e-05 Score=64.91 Aligned_cols=92 Identities=12% Similarity=0.179 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEE--EecCccccCCCCC----CcEEEEecCCCC-h
Q psy6712 78 PATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLI--TTDVWARGIDVQQ----VSLVINYDLPNN-R 150 (210)
Q Consensus 78 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv--~T~~~~~g~d~~~----~~~vi~~~~p~s-~ 150 (210)
.....+.+.+.++. .. ...++.. .++.+.++.|+++. .+++ +|..+++|+|+|+ +++||++++|.. +
T Consensus 393 S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 393 SYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp CHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred CHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 33446666666643 23 3445443 46888999998864 6776 8899999999997 889999998832 1
Q ss_pred -----------------------------hHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 151 -----------------------------ELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 151 -----------------------------~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
....|.+||+-|...+--+++++++
T Consensus 467 ~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 467 SDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp TSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 2345889999998554334445543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.41 E-value=4.4e-05 Score=59.40 Aligned_cols=53 Identities=21% Similarity=0.161 Sum_probs=36.7
Q ss_pred eEEEEEcCcchHHHHHHhcCCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhc
Q psy6712 4 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLN 62 (210)
Q Consensus 4 ~~~~~~gg~~~~~~~~~l~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~ 62 (210)
.+..++||.+... ....+.+|+|+||+.+.. .....+++++++|+||||++.+
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~---~~~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 187 MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp GEEECSTTCSSTT---CCCTTCSEEEECHHHHTT---SCGGGGGGEEEEEEETGGGCCH
T ss_pred eEEEEeCCCcchh---hhccCCcEEEEchHHHHh---hHHHHHhhCCEEEEECCccCCc
Confidence 4556666654432 223568999999987543 2334567889999999999874
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.96 E-value=0.00052 Score=52.03 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.8
Q ss_pred CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHhccch
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGF 65 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~~~~~ 65 (210)
..+|+|+||+.+...... ....++++|+||+|.+.+..+
T Consensus 171 ~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~ 209 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY 209 (237)
T ss_dssp CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH
T ss_pred cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH
Confidence 568999999987765542 124689999999999976554
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.56 E-value=0.0019 Score=54.96 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHhcCCCcEEEEChHHHHHHHHhcCccC-CCccEEEechhhHHhc
Q psy6712 19 RKLDYGQHVVSGTPGRVFDMIRRRVLRT-RNIKMLVLDEADEMLN 62 (210)
Q Consensus 19 ~~l~~~~~Ili~Tp~~l~~~l~~~~~~~-~~~~~lviDE~~~l~~ 62 (210)
+....++||||+|+..+.+...+..+.+ .....+||||||.|.+
T Consensus 143 r~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 143 LNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 3445688999999999998765554443 4677899999999987
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.51 E-value=0.0033 Score=54.39 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=56.2
Q ss_pred CCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec--CccccCCCCC--CcEEEEecCCCC---
Q psy6712 77 PPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD--VWARGIDVQQ--VSLVINYDLPNN--- 149 (210)
Q Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~g~d~~~--~~~vi~~~~p~s--- 149 (210)
+.....+.+.+.++ ..... ...+|+..++.+.++.|+ ++-.||+++. .+++|+|+|+ ...||...+|..
T Consensus 456 ~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~ 531 (620)
T 4a15_A 456 PSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPD 531 (620)
T ss_dssp SCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCC
T ss_pred CCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCC
Confidence 33343555555554 22222 455566778999999999 8888999984 9999999985 778998877621
Q ss_pred ----------------h----------hHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 150 ----------------R----------ELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 150 ----------------~----------~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
. ....|.+||+-|...+--+++++++
T Consensus 532 p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 532 AINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 1224888999998654344444433
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.22 E-value=0.043 Score=43.40 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCccccCC-----CCCCcEEEEecCCCChhHH-HH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGID-----VQQVSLVINYDLPNNRELY-IH 155 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~g~d-----~~~~~~vi~~~~p~s~~~~-~q 155 (210)
.+.+..++..++++..-+.|.....+++ . .+....+.+.|+..+.|++ +..++.||.||..|++..= +|
T Consensus 138 LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQ 212 (328)
T 3hgt_A 138 MDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQ 212 (328)
T ss_dssp HHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHH
T ss_pred HHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHH
Confidence 7888888888999999999985443222 1 2345566666777777775 6789999999999998874 89
Q ss_pred hhhhhcCCC----CceeEEEEeccC
Q psy6712 156 RIGRSGRFG----RKGVAISFVKSD 176 (210)
Q Consensus 156 ~~GR~gR~g----~~g~~~~~~~~~ 176 (210)
.+-|+.|.| +.-.++-++...
T Consensus 213 a~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 213 YLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp HHHCCC---------CCEEEEEETT
T ss_pred HHHHHhhhccCCCCcceEEEEeCCC
Confidence 888888873 244577777654
No 95
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.0066 Score=51.56 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.3
Q ss_pred cCCCcEEEEChHHHHHHHHhcCcc-------CCCccEEEechhhHHh
Q psy6712 22 DYGQHVVSGTPGRVFDMIRRRVLR-------TRNIKMLVLDEADEML 61 (210)
Q Consensus 22 ~~~~~Ili~Tp~~l~~~l~~~~~~-------~~~~~~lviDE~~~l~ 61 (210)
..++||+|+|+..+.+....+.+. +.....+||||||.+.
T Consensus 142 ~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 142 LKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 456799999999988755443322 3567899999999994
No 96
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.17 E-value=0.27 Score=41.71 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=52.5
Q ss_pred cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEe--cCccccCCCC-----CCcEEEEecCCCC---------------
Q psy6712 92 ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT--DVWARGIDVQ-----QVSLVINYDLPNN--------------- 149 (210)
Q Consensus 92 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T--~~~~~g~d~~-----~~~~vi~~~~p~s--------------- 149 (210)
.+.++..-..+++. .+..+.|+...-.||+++ ..+.+|+|+| .+..||...+|..
T Consensus 413 ~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~ 489 (551)
T 3crv_A 413 ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSL 489 (551)
T ss_dssp CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTC
T ss_pred cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 35555554445554 456777754444799998 6999999999 4778888776521
Q ss_pred -----h----------hHHHHhhhhhcCCCCceeEEEEecc
Q psy6712 150 -----R----------ELYIHRIGRSGRFGRKGVAISFVKS 175 (210)
Q Consensus 150 -----~----------~~~~q~~GR~gR~g~~g~~~~~~~~ 175 (210)
. ....|.+||+-|...+--+++++++
T Consensus 490 ~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 490 KMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp CSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred hhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 1 1123788999898665445555544
No 97
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=93.47 E-value=0.0091 Score=54.29 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcEEEEChHHHHHHHHh-cCccCCCccEEEechhhHHhcc
Q psy6712 24 GQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~-~~~~~~~~~~lviDE~~~l~~~ 63 (210)
..+|+|+|++.+...... ..+...+++++|+||||++.+.
T Consensus 248 ~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~ 288 (968)
T 3dmq_A 248 TEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWS 288 (968)
T ss_dssp TCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCB
T ss_pred cCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCC
Confidence 569999999876532111 2234567899999999999753
No 98
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.16 E-value=0.32 Score=43.19 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=46.6
Q ss_pred HHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc-ccCCCCCCcEEEE
Q psy6712 86 TEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA-RGIDVQQVSLVIN 143 (210)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-~g~d~~~~~~vi~ 143 (210)
.+.+...++++..+||+++..++...++.+.+|+.+|+|+|...- ..+.+.++.+||.
T Consensus 438 ~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 438 VESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 334444589999999999999999999999999999999997443 3466778887774
No 99
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=84.88 E-value=1.7 Score=35.00 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=46.0
Q ss_pred HHHHHHHHHh---cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc----ccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMRE---ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA----RGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~g~d~~~~~~vi~ 143 (210)
+....+.++. .++++..++|+.+..++...++.+..++.+|+|+|.-.. .-++..++++||.
T Consensus 77 ~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 77 VKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred HHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 3444444444 588999999999999999999999999999999996322 1245557787775
No 100
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=79.17 E-value=3.3 Score=38.50 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=43.7
Q ss_pred HhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-CccccCCCCCCcEEEE
Q psy6712 90 REANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-VWARGIDVQQVSLVIN 143 (210)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~g~d~~~~~~vi~ 143 (210)
...++++..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||.
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 33468899999999999999999999999999999995 3344466777777764
No 101
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=75.81 E-value=4.8 Score=37.20 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=47.9
Q ss_pred HHHHHHHHHh---cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCcc----ccCCCCCCcEEEE
Q psy6712 82 VDWLTEKMRE---ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA----RGIDVQQVSLVIN 143 (210)
Q Consensus 82 ~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~g~d~~~~~~vi~ 143 (210)
+..+.+.+++ .++.+..+||+++..++...++.+..|+.+|+|+|.-.. .-+++.++.++|.
T Consensus 134 a~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 134 VKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 5555555655 578999999999999999999999999999999995221 1145567888875
No 102
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=73.14 E-value=7.6 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.9
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEec
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLD 55 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviD 55 (210)
|+++..++|+.+..+... .+.+ ..+|||+|. .+. ..+++.+++++|.-
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQHVINY 129 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCSEEEES
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCCEEEEe
Confidence 678999999988665443 3333 579999993 333 34688889988863
No 103
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=72.91 E-value=1.7 Score=37.39 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHhcC----cc-CCCccEEEechhhHHhcc
Q psy6712 18 LRKLDYGQHVVSGTPGRVFDMIRRRV----LR-TRNIKMLVLDEADEMLNK 63 (210)
Q Consensus 18 ~~~l~~~~~Ili~Tp~~l~~~l~~~~----~~-~~~~~~lviDE~~~l~~~ 63 (210)
.+.....+||||+.-.-+.+...+.. +. ...-..+||||||.|.+.
T Consensus 169 aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 169 MKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDI 219 (620)
T ss_dssp HHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHH
T ss_pred HHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHH
Confidence 34455678999998755444322211 11 123458999999999753
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=71.73 E-value=9.9 Score=31.85 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
+....+.|.+.++.+..++++.+..++...+..+..|..+++++|.
T Consensus 78 ~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 78 MKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4445556667799999999999999999999999999999999995
No 105
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=71.68 E-value=6.5 Score=27.06 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=34.2
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+++..++|+.+..+.. ..+.+ ..+|||+|. .+ ...+++.+++++|.-+
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENISLVINYD 111 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCSEEEESS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCCEEEEeC
Confidence 67899999998765544 34444 579999993 22 3456788899888543
No 106
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=69.29 E-value=5.7 Score=28.82 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=33.8
Q ss_pred CceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..++...+ ++ ..+|||+|. .+ ...+++..++++|.
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDLVVH 105 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcEEEE
Confidence 67899999998876655444 34 579999993 22 34578888998873
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=66.49 E-value=12 Score=31.99 Aligned_cols=46 Identities=4% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHH--hcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEF--RSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~ilv~T~ 127 (210)
+....+.|.+.++.+..++|+++..++..++..+ ..+..+++++|.
T Consensus 97 ~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 97 MEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp HHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred HHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4445556666699999999999999999998888 578899999997
No 108
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.96 E-value=26 Score=22.64 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcE
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRV 122 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 122 (210)
...+...++..|..+..++++.....|++.++.|.....++
T Consensus 15 lkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 15 LKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 34555667888999999999999999999999998654444
No 109
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=62.71 E-value=11 Score=25.85 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=33.8
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+.+..++|+.+..+.. ..+.+ ..+|||+|. .+ ...+++.+++++|.-+
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCSEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCCEEEEeC
Confidence 67899999998866544 33444 579999993 22 3446788888887533
No 110
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=57.97 E-value=10 Score=29.28 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred CceEEEEEcCcchHHHHHHh---cC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLRKL---DY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l---~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+.+..++|+.+..++...+ ++ ..+|||+|. .+ ...+++..++++|.
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQVDLVVH 102 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccceeEEEE
Confidence 67899999998877665444 33 579999993 22 23466777777764
No 111
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=56.09 E-value=16 Score=29.64 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=34.3
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+.. ..+++ ..+|||+|. .....+++.+++++|.
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHVIN 374 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEEEE
Confidence 67899999998866544 34444 579999995 2334578899998885
No 112
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=54.41 E-value=55 Score=23.20 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=33.9
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc------cccCCCCCCcEEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW------ARGIDVQQVSLVIN 143 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~g~d~~~~~~vi~ 143 (210)
++.+..++|+.+...+.. .+..+..+|+|+|.-. ...+++.+++++|.
T Consensus 111 ~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp TCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 688999999988766543 4455677999999521 23456777888775
No 113
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.35 E-value=18 Score=28.59 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.8
Q ss_pred CceEEEEEcCcchHHHHHH---hcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLRK---LDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~---l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+.+..++|+.+.++.... +.+ ..+|||+|. .+. ..+++.+++++|.
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVKHVIN 350 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCEEEEEE
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccCCEEEE
Confidence 6789999999886654433 333 579999994 333 3478888998885
No 114
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=51.09 E-value=58 Score=23.62 Aligned_cols=51 Identities=10% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-----Ccc-ccCCCCCCcEEEE
Q psy6712 89 MREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-----VWA-RGIDVQQVSLVIN 143 (210)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~g~d~~~~~~vi~ 143 (210)
....++.+..++|+.+...+...+.. ..+|+|+|. .+. ...++.++.++|.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 34458899999999987766544432 478999995 222 2356778888774
No 115
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=49.47 E-value=21 Score=24.06 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 83 DWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 83 ~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
.--.+.|++ .|+.+..+... +.+-+.++.+..++|+++.+|-|..
T Consensus 38 ~gTa~~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 38 GTTGRRIEEATGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred cHHHHHHHHhhCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 344566666 79988888643 3246778999999999999988864
No 116
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=47.52 E-value=25 Score=30.58 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=37.9
Q ss_pred CceEEEEEcCcchH---HHHHHhcC---CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH
Q psy6712 2 NVQCHACIGGTNLS---EDLRKLDY---GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE 59 (210)
Q Consensus 2 ~i~~~~~~gg~~~~---~~~~~l~~---~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~ 59 (210)
|+.|+.++|+.+.. ++.+.+.+ ..+|||||. .+. ..+++ +++++|.-.+..
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBSEEEESCSBC
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-CccEEEECCccc
Confidence 57889999999877 56677764 369999995 233 44678 899998866643
No 117
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=46.84 E-value=17 Score=25.21 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=33.6
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEec
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLD 55 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviD 55 (210)
|+++..++|+.+..+... .+.+ ..+|||+|.- ....+++..++++|.-
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~~Vi~~ 106 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVNIAFNY 106 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCSEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCCEEEEE
Confidence 678999999988665443 3444 5799999942 2334677888888753
No 118
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=45.84 E-value=20 Score=29.52 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=36.3
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
+.++..++|+.+..+.. ..+.+ ..+|||+|+.. +.. .+++.+++++|+.++.
T Consensus 371 ~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~----~~~-GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 371 YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGV----FST-GISVKNLHHVVLAHGV 426 (510)
T ss_dssp CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHH----HHH-SCCCCSEEEEEESSCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcCh----hhc-ccccccCcEEEEeCCC
Confidence 35788999998865443 33333 56999999653 333 4688899999987665
No 119
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=44.74 E-value=19 Score=24.95 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=33.4
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+.. ..+.+ ..+|||+|. .+ ...+++..++++|.
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVTIVVN 108 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEEEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCCEEEE
Confidence 67899999998866544 34444 579999994 22 34467888888884
No 120
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=43.07 E-value=37 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=30.4
Q ss_pred HHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 86 TEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 86 ~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
++.|++ .|+++..+... +..-+.++.+..++|+++.+|-|..
T Consensus 49 a~~L~e~~Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 49 GNLISRATGMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HHHHHHHHCCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHhCceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 355655 78888888643 2225678999999999888887753
No 121
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=42.62 E-value=26 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=35.3
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
|+++..++|+.+..+.. +.+++ ..+|||+|. .....+++.+++++|.-+.
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEEEEEESSC
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCCEEEEcCC
Confidence 57788999998866544 34444 579999995 2234578889999886443
No 122
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=42.16 E-value=27 Score=25.88 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=14.0
Q ss_pred EEEecCCCCHhHHHHHHHHHh
Q psy6712 96 VSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~~f~ 116 (210)
+..=+-+|+.++-.+.+.++-
T Consensus 174 ~~IGk~~f~~e~L~eNi~a~i 194 (229)
T 3u42_A 174 APVGKASFPPEKLADNIRAFI 194 (229)
T ss_dssp EEEEETTSCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 334445788888877777764
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=41.64 E-value=26 Score=27.58 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=33.8
Q ss_pred CceEEEEEcCcchHHHHH---HhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+.+..++|+.+..+... .+.+ ..+|||+|. . ....+++.+++++|.
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVSVVIN 340 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCCEEEE
Confidence 677899999988666543 3444 579999994 2 234578889998884
No 124
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=41.29 E-value=33 Score=28.63 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=34.7
Q ss_pred CceEEEEEcCcchHHHHH---Hhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+++..++|+.+..+... .+. ...+|||+|. .+ ...+++.+++++|.-.
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVHEVLQIG 418 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCCEEEEES
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccCCEEEEEC
Confidence 678999999988665443 333 3579999995 22 3457888899888544
No 125
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=41.06 E-value=27 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=33.4
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+++..++|+.+..+.. ..+.+ ..+|||+|. . ....+++.+++++|.
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVSLIIN 350 (410)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEEEEEE
T ss_pred CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCCEEEE
Confidence 67788999998865544 33333 578999995 2 234578889998885
No 126
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=39.83 E-value=19 Score=30.79 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=21.1
Q ss_pred CccEEEechhhHHhccchHHHHHHHHhhCCCchh
Q psy6712 48 NIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 81 (210)
Q Consensus 48 ~~~~lviDE~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (210)
.++++|+|||+ |++ .+.+..++..++...+
T Consensus 262 ~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 262 HLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp SCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred CCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 57899999999 654 3455667776665444
No 127
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=39.59 E-value=19 Score=19.06 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.1
Q ss_pred EecCCCCHhHHHHHHHHHhc
Q psy6712 98 SMHGDMPQKERDGIMKEFRS 117 (210)
Q Consensus 98 ~~~~~~~~~~r~~~~~~f~~ 117 (210)
..||+|+-.++++..+.|-.
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 35899999999999999853
No 128
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.28 E-value=35 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=33.4
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+++..++|+.+..+.. ..+.+ ..+|||+|. .+. ..+++.+++++|.-+
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDLNCVINYH 314 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCCSEEEESS
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccCCEEEEec
Confidence 67889999998866544 33334 579999994 222 236788888888543
No 129
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=36.34 E-value=49 Score=23.50 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=33.3
Q ss_pred HHHHHHHHh-cCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC
Q psy6712 83 DWLTEKMRE-ANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV 128 (210)
Q Consensus 83 ~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~ 128 (210)
.--++.|++ .|+++..+... +..-+.++.+..++|+++++|-|..
T Consensus 62 ~gTa~~L~e~~Gl~v~~v~k~-~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 62 GTTGALLQEKLGLKVHRLKSG-PLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp HHHHHHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred hHHHHHHHHHhCceeEEEeec-CCCCCchHHHHHHCCCccEEEEccC
Confidence 344566766 79998888643 2225678999999999999988864
No 130
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=36.27 E-value=44 Score=28.13 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=34.1
Q ss_pred CceEEEEEcCcchHHHHH---Hhc-CCCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 2 NVQCHACIGGTNLSEDLR---KLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~---~l~-~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
|+.+..++|+.+..+... .+. ...+|||+|. .+ ...+++.+++++|.-.
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVHEVLQIG 367 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCCEEEEES
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccCCEEEEcC
Confidence 678999999988665443 333 3579999995 22 2356788888887544
No 131
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=36.11 E-value=1.4e+02 Score=23.09 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=33.7
Q ss_pred CceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc------cccCCCCCCcEEEE
Q psy6712 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW------ARGIDVQQVSLVIN 143 (210)
Q Consensus 93 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~g~d~~~~~~vi~ 143 (210)
++.+..++|+.+...... .+..+..+|+|+|.-. ...+++.++++||.
T Consensus 105 ~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp TCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 788999999988766554 3445677999999521 23356677887774
No 132
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.26 E-value=33 Score=29.70 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred CceEEEEEcCcchHHHHHH---hcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHH
Q psy6712 2 NVQCHACIGGTNLSEDLRK---LDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~---l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l 60 (210)
|+++..++|+.+..+.... +++ ..+|+|||. .+ ...+++.+++++|+-+++..
T Consensus 469 gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 469 GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTEEEEEETTTTCC
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCCCEEEEeCcccc
Confidence 6888899998876554443 443 579999994 22 44578889999999888643
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=34.80 E-value=30 Score=24.72 Aligned_cols=16 Identities=13% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCccEEEechhhHHhc
Q psy6712 47 RNIKMLVLDEADEMLN 62 (210)
Q Consensus 47 ~~~~~lviDE~~~l~~ 62 (210)
..-..+++||+|.+..
T Consensus 103 ~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 103 EQFDLICIDDVDAVAG 118 (242)
T ss_dssp GGSSEEEEETGGGGTT
T ss_pred cCCCEEEEeccccccC
Confidence 3457899999998754
No 134
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=33.82 E-value=83 Score=25.54 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=32.3
Q ss_pred eEEEEEcCcc--hHHHHHHhcC-------CCcEEEEChHHHHHH----HHhcCc-----cCC-CccEEEechhhHHhc
Q psy6712 4 QCHACIGGTN--LSEDLRKLDY-------GQHVVSGTPGRVFDM----IRRRVL-----RTR-NIKMLVLDEADEMLN 62 (210)
Q Consensus 4 ~~~~~~gg~~--~~~~~~~l~~-------~~~Ili~Tp~~l~~~----l~~~~~-----~~~-~~~~lviDE~~~l~~ 62 (210)
+..+++|+.. .......+.+ +..++..+...+..- +..+.. .+. ..++++|||+|.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 4567788543 3333333321 556776665544332 221110 123 678999999999875
No 135
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=33.31 E-value=40 Score=26.44 Aligned_cols=47 Identities=6% Similarity=0.107 Sum_probs=33.2
Q ss_pred CceEEEEEcCcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
|+.+..++|+.+..+.. ..+.+ ..+|||+|. . ....+++..++++|.
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~~Vi~ 332 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVNVVIN 332 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEEEEEE
T ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCCEEEE
Confidence 57888999998866544 34444 579999994 2 234578888888875
No 136
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=32.52 E-value=48 Score=30.49 Aligned_cols=47 Identities=19% Similarity=0.555 Sum_probs=34.4
Q ss_pred eEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc-cccC-CCCCCcEEEE
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW-ARGI-DVQQVSLVIN 143 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~~g~-d~~~~~~vi~ 143 (210)
.+..++|+++..++.+..+.+++ .+|+|+|.-. ..-+ .+.+++++|.
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred eEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 89999999999988888888876 8999999521 1111 1456777764
No 137
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=31.79 E-value=1.5e+02 Score=21.59 Aligned_cols=49 Identities=8% Similarity=0.252 Sum_probs=33.2
Q ss_pred hcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecC-----c--cccCCCCCCcEEEE
Q psy6712 91 EANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDV-----W--ARGIDVQQVSLVIN 143 (210)
Q Consensus 91 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~--~~g~d~~~~~~vi~ 143 (210)
..++.+..++|+.+...+...+ .+..+|+|+|.- + ..++++.+++++|.
T Consensus 137 ~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 137 SIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp GGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred cCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3478899999998765544332 246799999952 1 13466778887775
No 138
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.38 E-value=83 Score=19.53 Aligned_cols=79 Identities=9% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc----CCCcEEEEecCccccCCCC----CCcEEEEecCCCChhHH
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS----GTSRVLITTDVWARGIDVQ----QVSLVINYDLPNNRELY 153 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~g~d~~----~~~~vi~~~~p~s~~~~ 153 (210)
.....+.+.+....+..+.-.|+...-.+.++.++. ....+++.|....... .. .++.+ ..-|.+...+
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~--l~KP~~~~~L 112 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFY--LEKPIDIASL 112 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEE--EESSCCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHh--eeCCCCHHHH
Confidence 445556666677788888878777667777777764 3456776665433221 10 12222 2247777777
Q ss_pred HHhhhhhcCC
Q psy6712 154 IHRIGRSGRF 163 (210)
Q Consensus 154 ~q~~GR~gR~ 163 (210)
.+++.++.+.
T Consensus 113 ~~~i~~~~~~ 122 (127)
T 3i42_A 113 EPILQSIEGH 122 (127)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhhcc
Confidence 7777766544
No 139
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.11 E-value=15 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.4
Q ss_pred ccEEEechhhHHhc
Q psy6712 49 IKMLVLDEADEMLN 62 (210)
Q Consensus 49 ~~~lviDE~~~l~~ 62 (210)
-.++||||||.+..
T Consensus 88 ~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 88 GSIVIVDEAQDVWP 101 (199)
T ss_dssp TCEEEETTGGGTSB
T ss_pred ceEEEEEChhhhcc
Confidence 45899999999853
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.09 E-value=48 Score=25.28 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=12.4
Q ss_pred CccEEEechhhHHh
Q psy6712 48 NIKMLVLDEADEML 61 (210)
Q Consensus 48 ~~~~lviDE~~~l~ 61 (210)
..+.+++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999886
No 141
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=30.46 E-value=20 Score=26.41 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred cEEEE---ChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 26 HVVSG---TPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 26 ~Ili~---Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
.+.++ ||..+.+.|....++++++..+-+||--
T Consensus 36 ~l~LsgGstp~~~y~~L~~~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 36 LLVVSGGSTPKPFFTSLAAKALPWARVDVTLADERW 71 (226)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSCGGGEEEEESEEES
T ss_pred EEEEcCCCCHHHHHHHHHhcCCCchhEEEEEeeecc
Confidence 44444 5778888888888999999999999954
No 142
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=30.21 E-value=20 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=27.4
Q ss_pred CCcEEEE---ChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 24 GQHVVSG---TPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 24 ~~~Ili~---Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
.+.+.++ ||..+.+.|....++++++..+-+||--
T Consensus 35 ~~~l~lsgGstp~~~y~~L~~~~i~w~~v~~f~~DEr~ 72 (232)
T 3lhi_A 35 GAVLAVSGGRSPIAFFNALSQKDLDWKNVGITLADERI 72 (232)
T ss_dssp CEEEEECCSSTTHHHHHHHHTSCCCGGGEEEEESEEES
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCchheEEEEeeecc
Confidence 3455554 4777888888888999999999999953
No 143
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=29.08 E-value=22 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCcEEEE---ChHHHHHHHHhcCccCCCccEEEechhh
Q psy6712 24 GQHVVSG---TPGRVFDMIRRRVLRTRNIKMLVLDEAD 58 (210)
Q Consensus 24 ~~~Ili~---Tp~~l~~~l~~~~~~~~~~~~lviDE~~ 58 (210)
.+.+.++ ||..+.+.|....++++++..+-+||--
T Consensus 38 ~~~l~lsgGstp~~~y~~L~~~~idw~~v~~f~~DEr~ 75 (233)
T 3nwp_A 38 KASLVVSGGSTPLKLFQLLSMKSIDWSDVYITLADERW 75 (233)
T ss_dssp CEEEEECCSSTTHHHHHHHHHCCSCGGGEEEEESEEES
T ss_pred CEEEEEcCCCCHHHHHHHHHhcCCChhHeEEEeCeecc
Confidence 3455554 4677888888888999999999999953
No 144
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.88 E-value=38 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHH----HHHHHHHhcCCCcEEEEec
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKER----DGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r----~~~~~~f~~g~~~ilv~T~ 127 (210)
.--+++|++.|+++..+.... ...+ ..+.+.+++|+++++|-|.
T Consensus 57 ~GTa~~L~~~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 57 EATSDWLNANNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp HHHHHHHHHTTCCCEEECCGG-GC-----CBCHHHHHHTTSCCEEEECC
T ss_pred chHHHHHHHcCCeEEEEEecc-CCCcccccccHHHHHHCCCceEEEECC
Confidence 334567778888888876431 1113 4688999999988888875
No 145
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=28.74 E-value=1.7e+02 Score=21.46 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=32.5
Q ss_pred HhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec-----Cc--cccCCCCCCcEEEE
Q psy6712 90 REANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD-----VW--ARGIDVQQVSLVIN 143 (210)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~--~~g~d~~~~~~vi~ 143 (210)
...+..+..++|+.+...... .+..+ .+|+|+|. .+ ..++++.++.++|.
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred hhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 345678888999887655443 33334 79999994 11 12466778888774
No 146
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=28.32 E-value=42 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=23.4
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~ 61 (210)
...+||++|..... +..+.-..++++|||||....
T Consensus 318 ~~~~vI~~T~~~~~----~~~l~~~~fd~viIDEAsQ~~ 352 (624)
T 2gk6_A 318 MNADVICCTCVGAG----DPRLAKMQFRSILIDESTQAT 352 (624)
T ss_dssp HTCSEEEEETGGGG----CGGGTTCCCSEEEETTGGGSC
T ss_pred hcCCEEEEcChhhc----chhhhcCCCCEEEEecccccC
Confidence 46789999965422 222333578999999996544
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.15 E-value=32 Score=24.21 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.8
Q ss_pred CccEEEechhhHH
Q psy6712 48 NIKMLVLDEADEM 60 (210)
Q Consensus 48 ~~~~lviDE~~~l 60 (210)
..+++++||+|.+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 5679999999864
No 148
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.10 E-value=37 Score=26.91 Aligned_cols=17 Identities=0% Similarity=-0.261 Sum_probs=11.5
Q ss_pred cCCCCHhHHHHHHHHHh
Q psy6712 100 HGDMPQKERDGIMKEFR 116 (210)
Q Consensus 100 ~~~~~~~~r~~~~~~f~ 116 (210)
+-+|+.++-.+.+.++-
T Consensus 291 k~sfs~EqL~ENI~Avi 307 (352)
T 3bbo_D 291 KLNFEEEDLLINLFATI 307 (352)
T ss_dssp ETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 34688877777766663
No 149
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=27.47 E-value=43 Score=28.99 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=37.4
Q ss_pred CceEEEEEcCcchHHHHHH---hcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhH
Q psy6712 2 NVQCHACIGGTNLSEDLRK---LDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE 59 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~---l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~ 59 (210)
|+++..++|+.+..+.... ++. ..+|+|||. .+ ...+++.+++++|+=+++.
T Consensus 463 gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 463 GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEEEEEETTTTS
T ss_pred CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCCEEEEeCCcc
Confidence 6788899998876554433 444 579999984 22 3457888999999887754
No 150
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=27.41 E-value=67 Score=28.39 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=33.6
Q ss_pred CceEEEEEcCcchHHHHHHhcC---------CCcEEEEChHHHHHHHHhcCccCCCccEEEe
Q psy6712 2 NVQCHACIGGTNLSEDLRKLDY---------GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54 (210)
Q Consensus 2 ~i~~~~~~gg~~~~~~~~~l~~---------~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lvi 54 (210)
++.+..++|+.+.+++.+.+.. ...|||+|. .+.. .+++..+++||-
T Consensus 338 ~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae~-GidIp~v~~VId 393 (773)
T 2xau_A 338 PLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp CEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHHH-TCCCTTEEEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHHh-CcCcCCeEEEEe
Confidence 5779999999998877755532 348999995 2333 367788887663
No 151
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.67 E-value=1.3e+02 Score=19.42 Aligned_cols=112 Identities=10% Similarity=0.186 Sum_probs=61.3
Q ss_pred cCCCccEEEechhhHHhccchHHHHHHHHhh--CCCchhHHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcE
Q psy6712 45 RTRNIKMLVLDEADEMLNKGFKEQIYDVYRY--LPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRV 122 (210)
Q Consensus 45 ~~~~~~~lviDE~~~l~~~~~~~~~~~i~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 122 (210)
.-+.++.+|+|+=..+. ......+... .+ +......+.-.+.+++..+.+..+.-.||...-.+..+..++..+.+
T Consensus 5 ~~r~~rILiVdD~~~~~-~~l~~~L~~~-G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipv 82 (123)
T 2lpm_A 5 TERRLRVLVVEDESMIA-MLIEDTLCEL-GHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPF 82 (123)
T ss_dssp CCCCCCEEEESSSTTTS-HHHHHHHHHH-CCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSS
T ss_pred CCCCCEEEEEeCCHHHH-HHHHHHHHHC-CCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCE
Confidence 34567889988643222 2222222222 11 11122234444566777889999998898877777777777767777
Q ss_pred EEEecCccccCC--CCCCcEEEEecCCCChhHHHHhhhhhc
Q psy6712 123 LITTDVWARGID--VQQVSLVINYDLPNNRELYIHRIGRSG 161 (210)
Q Consensus 123 lv~T~~~~~g~d--~~~~~~vi~~~~p~s~~~~~q~~GR~g 161 (210)
++.|........ ....++ .-=|.+......++.|..
T Consensus 83 I~lTa~~~~~~~~~~g~~~y---l~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 83 IFATGYGSKGLDTRYSNIPL---LTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCBCTTCTTSCCSSSCSCSC---BCSSSSHHHHHHHHSTTC
T ss_pred EEEecCccHHHHHhCCCCcE---EECCCCHHHHHHHHHHHH
Confidence 777753332211 111111 223556666665555543
No 152
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.76 E-value=30 Score=27.47 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.6
Q ss_pred CccEEEechhhHHhc
Q psy6712 48 NIKMLVLDEADEMLN 62 (210)
Q Consensus 48 ~~~~lviDE~~~l~~ 62 (210)
.-.++++||||.++.
T Consensus 262 ~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVD 276 (392)
T ss_dssp TTCEEEETTGGGGCC
T ss_pred ccEEEEEecHHHHhC
Confidence 356899999999985
No 153
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=25.58 E-value=49 Score=26.32 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=31.2
Q ss_pred CceEEEEEc--------CcchHHHH---HHhcC-CCcEEEEChHHHHHHHHhcCccCCCccEEEechh
Q psy6712 2 NVQCHACIG--------GTNLSEDL---RKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEA 57 (210)
Q Consensus 2 ~i~~~~~~g--------g~~~~~~~---~~l~~-~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~ 57 (210)
|+++..++| +.+..++. ..+.+ ..+|||+|. . ....+++..++++|+-+.
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~-~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----V-GEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----G-GGGGGGSTTCCEEEESSC
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----c-cccCCCchhCCEEEEeCC
Confidence 678889999 65544333 44433 579999993 2 234578888998885543
No 154
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.42 E-value=1.3e+02 Score=18.69 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHhc-CceEEEecCCCCH-hHHHHHHHHHhc--CCCcEEEEec
Q psy6712 82 VDWLTEKMREA-NFTVSSMHGDMPQ-KERDGIMKEFRS--GTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~-~~~~~~~~~~~~~-~~r~~~~~~f~~--g~~~ilv~T~ 127 (210)
.....+.+.+. ...+..+.-.++. ..-.+.++.++. ....+++.|.
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISG 87 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 34444555554 5677777766654 444445555443 2456666654
No 155
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.36 E-value=95 Score=24.44 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=28.9
Q ss_pred ceEEEEEcCcc---hHHHHHHh-cCCCcEEEEChHHHHHHHHhcCccCCCccEEEech
Q psy6712 3 VQCHACIGGTN---LSEDLRKL-DYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDE 56 (210)
Q Consensus 3 i~~~~~~gg~~---~~~~~~~l-~~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE 56 (210)
+.+..+..... ..+.++.+ .+++|+||++...+.+.+..-.-...++.++++|.
T Consensus 61 ~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 61 VETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp EEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESC
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 45444444322 22233444 35899999998666655443222334566666654
No 156
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=24.36 E-value=2.3e+02 Score=21.33 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCcEE-EEecCccccCCC--C------CCcEEEEecCCCChhHHHHhhhhhcCCCCceeEEEEeccCcH
Q psy6712 108 RDGIMKEFRSGTSRVL-ITTDVWARGIDV--Q------QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178 (210)
Q Consensus 108 r~~~~~~f~~g~~~il-v~T~~~~~g~d~--~------~~~~vi~~~~p~s~~~~~q~~GR~gR~g~~g~~~~~~~~~~~ 178 (210)
-.++..+.++|+..++ ||.++...-+-. | ++.+++. .+-.+..+.+|+- .....++.-+.+++.
T Consensus 136 ~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V----~sK~eLG~A~Gkk---~~s~VAItD~g~eDk 208 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV----KGKARLGTLVNQK---TSAVAALTEVRAEDE 208 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEE----SCHHHHHHHTTCS---SCCSEEEESSCCSCC
T ss_pred HHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEE----CCHHHHHHHhCCC---CcEEEEeecCChhhH
Confidence 3678888889998855 555543321111 1 2333332 2445454555442 122333333344565
Q ss_pred HHHHHHHHHhcCcc
Q psy6712 179 RILRDIEQYYSTQI 192 (210)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (210)
..+.++.+.+...+
T Consensus 209 ~al~kLve~iktny 222 (256)
T 3izc_H 209 AALAKLVSTIDANF 222 (256)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666555443
No 157
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=24.36 E-value=1.3e+02 Score=27.06 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=27.0
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
++....+..++.+.++.|+++.+.+.... ..+|+|+|.
T Consensus 134 ~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 134 NNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 33333444589999999999987555432 369999996
No 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=23.73 E-value=77 Score=23.18 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=18.2
Q ss_pred EEEChHHHHHHHHhcCccCCCccEEEechhhHH
Q psy6712 28 VSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60 (210)
Q Consensus 28 li~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l 60 (210)
-+.+++.+.+.+... ..-.+.++++|||++.+
T Consensus 70 ~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 70 EVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp EESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred ccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 344444455444432 11235789999999753
No 159
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=23.63 E-value=69 Score=23.93 Aligned_cols=22 Identities=0% Similarity=-0.207 Sum_probs=14.4
Q ss_pred eEEEecCCCCHhHHHHHHHHHh
Q psy6712 95 TVSSMHGDMPQKERDGIMKEFR 116 (210)
Q Consensus 95 ~~~~~~~~~~~~~r~~~~~~f~ 116 (210)
.+..=|-+|+.++-.+.+.++-
T Consensus 176 ~v~VG~~~m~~e~L~eNi~a~i 197 (242)
T 3qoy_A 176 HMPVGKISFEKEKLIDNLYAAI 197 (242)
T ss_dssp EEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3444455788888877776653
No 160
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=23.35 E-value=1.1e+02 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
.+++...+...|+.+.++.|+++.+++.... ..+|+++|.
T Consensus 137 ae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 137 AEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3444444555699999999999987766543 379999995
No 161
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=22.80 E-value=1.3e+02 Score=21.51 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=29.8
Q ss_pred hcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEecCc-----cc--cCCCCCCcEEEE
Q psy6712 91 EANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW-----AR--GIDVQQVSLVIN 143 (210)
Q Consensus 91 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~~~-----~~--g~d~~~~~~vi~ 143 (210)
..++.+..++|+.+.......+ +..+|+|+|.-. .. .+++.+++++|.
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 3457899999998765544332 367999999521 11 356667777774
No 162
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.73 E-value=1.5e+02 Score=18.74 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhc----CCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRS----GTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~T~ 127 (210)
.....+.+......+.++.-.|+...-.+.++.++. ....+++.|.
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 455556666667788888888887777777777775 2345555553
No 163
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=22.49 E-value=1.4e+02 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 84 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
++....+..|+.+.++.|+++.++|.... ..+|+++|+
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 33333444589999999999987666432 268999995
No 164
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=22.48 E-value=1.9e+02 Score=19.83 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCceEEEecC-CCCHhHHHHHHHH-HhcCCCcEEEEecCccccC
Q psy6712 82 VDWLTEKMREANFTVSSMHG-DMPQKERDGIMKE-FRSGTSRVLITTDVWARGI 133 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~-~~~~~~r~~~~~~-f~~g~~~ilv~T~~~~~g~ 133 (210)
-.++++.|.+.|+.+..+.- .-+.+...+.+.. ...++.+++|+|--.+-|-
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~ 95 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSST
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCC
Confidence 57788999999987654331 1122333333333 3356789999997666554
No 165
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=22.46 E-value=1.5e+02 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCceEEEecCCCCHhHHHHHHHHHhcCCCcEEEEec
Q psy6712 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTD 127 (210)
Q Consensus 83 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~T~ 127 (210)
+++....+..|+.+.++.|+++.+++.... ..+|+++|.
T Consensus 170 e~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 170 EWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 344444455699999999999987766443 268999996
No 166
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=22.28 E-value=52 Score=29.27 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~ 61 (210)
...+||++|..... +..+.-..++++|||||....
T Consensus 494 ~~a~VI~~T~~~~~----~~~l~~~~fd~viIDEAsQ~~ 528 (800)
T 2wjy_A 494 MNADVICCTCVGAG----DPRLAKMQFRSILIDESTQAT 528 (800)
T ss_dssp HHCSEEEEETGGGG----CTTTTTCCCSEEEETTGGGSC
T ss_pred ccCCEEEEchhhhC----ChhhhcCCCCEEEEECCCCCC
Confidence 46789999965432 222333578999999996554
No 167
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.80 E-value=59 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=23.3
Q ss_pred CCCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh
Q psy6712 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 23 ~~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~ 61 (210)
...+||++|...+. +..+. ..++++|||||..+.
T Consensus 497 ~~a~VI~~T~~~~~----~~~L~-~~fd~viIDEA~q~~ 530 (802)
T 2xzl_A 497 NKADVVCCTCVGAG----DKRLD-TKFRTVLIDESTQAS 530 (802)
T ss_dssp HTCSEEEEETTGGG----CTTCC-SCCSEEEETTGGGSC
T ss_pred ccCCEEEechhhcC----hHHHh-ccCCEEEEECccccc
Confidence 46789999865332 22333 278999999997654
No 168
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.35 E-value=24 Score=30.35 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=21.9
Q ss_pred CCcEEEEChHHHHHHHHhcCccCCCccEEEechhhHHh
Q psy6712 24 GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61 (210)
Q Consensus 24 ~~~Ili~Tp~~l~~~l~~~~~~~~~~~~lviDE~~~l~ 61 (210)
..+|+++|............+.-..++++|||||-...
T Consensus 342 ~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~ 379 (646)
T 4b3f_X 342 SANVVLATNTGASADGPLKLLPESYFDVVVIDECAQAL 379 (646)
T ss_dssp HCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSC
T ss_pred hcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccc
Confidence 56788887543221111112233568899999986543
No 169
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.09 E-value=2.8e+02 Score=21.07 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCceEEEecCC------CCHhHHHHHHHHHh---cCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGD------MPQKERDGIMKEFR---SGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~ilv~T~ 127 (210)
...+.+++-+.|+.-.++.|. ++.++|.++++... .|+..+++.+.
T Consensus 30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 84 (297)
T 3flu_A 30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG 84 (297)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC
Confidence 455566666777776666664 57788888877664 36777777765
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=20.80 E-value=63 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=11.6
Q ss_pred ccEEEechhhHHhc
Q psy6712 49 IKMLVLDEADEMLN 62 (210)
Q Consensus 49 ~~~lviDE~~~l~~ 62 (210)
-.+++|||+|.+..
T Consensus 116 ~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 116 NVILFIDELHTMVG 129 (195)
T ss_dssp TEEEEEETGGGGTT
T ss_pred CeEEEEeCHHHHhc
Confidence 45899999999874
No 171
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.06 E-value=2.9e+02 Score=21.00 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCceEEEecCC------CCHhHHHHHHHHHh---cCCCcEEEEec
Q psy6712 82 VDWLTEKMREANFTVSSMHGD------MPQKERDGIMKEFR---SGTSRVLITTD 127 (210)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~ilv~T~ 127 (210)
...+.+++-+.|+.-.++.|. ++.++|.++++... .|+..+++.+.
T Consensus 39 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg 93 (304)
T 3cpr_A 39 GREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG 93 (304)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC
Confidence 345555666666666666553 56677776666554 35566666654
Done!