RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6712
(210 letters)
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 245 bits (628), Expect = 9e-81
Identities = 90/117 (76%), Positives = 101/117 (86%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
VDWLTEKM +FTVS+MHGDM QKERD IM+EFRSG+SRVLITTD+ ARGIDVQQVSLV
Sbjct: 293 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
INYDLP NRE YIHRIGR GRFGRKGVAI+ V +D R LRDIE +Y+T I+EMP+N
Sbjct: 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409
Score = 153 bits (389), Expect = 5e-45
Identities = 48/83 (57%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE 59
M CHACIGGTN+ +++KL H++ GTPGRVFDM+ RR L + IKM VLDEADE
Sbjct: 135 MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194
Query: 60 MLNKGFKEQIYDVYRYLPPATQV 82
ML++GFK+QIYD+++ L TQV
Sbjct: 195 MLSRGFKDQIYDIFQKLNSNTQV 217
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 244 bits (626), Expect = 1e-80
Identities = 78/117 (66%), Positives = 102/117 (87%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V+ LT K+R FTVS+++ D+PQ+ERD IMKEFRSG+SR+LI+TD+ ARGIDVQQVSLV
Sbjct: 272 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
INYDLP N+E YIHRIGR GRFGRKGVAI+FV ++D+ +R++E++YSTQI+E+P +
Sbjct: 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388
Score = 149 bits (380), Expect = 7e-44
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
M+++ HACIGGT+ ED L +V GTPGRVFD I+RR RT IKM +LDEADEM
Sbjct: 116 MDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 174
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
L+ GFKEQIY ++ LPP TQV
Sbjct: 175 LSSGFKEQIYQIFTLLPPTTQV 196
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 236 bits (605), Expect = 1e-80
Identities = 78/117 (66%), Positives = 102/117 (87%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V+ LT K+R FTVS+++ D+PQ+ERD IMKEFRSG+SR+LI+TD+ ARGIDVQQVSLV
Sbjct: 43 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 102
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
INYDLP N+E YIHRIGR GRFGRKGVAI+FV ++D+ +R++E++YSTQI+E+P +
Sbjct: 103 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 245 bits (627), Expect = 1e-80
Identities = 107/117 (91%), Positives = 114/117 (97%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
VDWLTEKMREANFTVSSMHGDMPQKER+ IMKEFRSG SRVLI+TDVWARG+DV QVSL+
Sbjct: 289 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 348
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
INYDLPNNRELYIHRIGRSGR+GRKGVAI+FVK+DDIRILRDIEQYYSTQIDEMPMN
Sbjct: 349 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405
Score = 157 bits (399), Expect = 2e-46
Identities = 76/82 (92%), Positives = 79/82 (96%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
MNVQCHACIGGTN+ ED+RKLDYGQHVV+GTPGRVFDMIRRR LRTR IKMLVLDEADEM
Sbjct: 132 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 191
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
LNKGFKEQIYDVYRYLPPATQV
Sbjct: 192 LNKGFKEQIYDVYRYLPPATQV 213
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 247 bits (632), Expect = 3e-80
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 7/124 (5%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
+ + +M TV+ + G++ +RD IM FR GTS+VL+TT+V ARGIDV QV+LV
Sbjct: 370 AEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429
Query: 142 INYDLPNNR------ELYIHRIGRSGRFGRKGVAISFVKS-DDIRILRDIEQYYSTQIDE 194
+NYD+P ++ + Y+HRIGR+GRFGR GV+I+FV + I++Y+ I
Sbjct: 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489
Query: 195 MPMN 198
+P +
Sbjct: 490 VPTD 493
Score = 145 bits (367), Expect = 4e-41
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
V+ I + + +V GTPG V D+++RR L R+IK+ VLDEAD M
Sbjct: 216 TEVKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNM 271
Query: 61 LN-KGFKEQIYDVYRYLPPATQV 82
L+ +G +Q + LP TQ+
Sbjct: 272 LDQQGLGDQSMRIKHLLPRNTQI 294
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 237 bits (608), Expect = 7e-78
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V+ L +K+ + ++ H M Q+ER+ + EFR G R L+ +D+ RGID+Q V++V
Sbjct: 271 VELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201
IN+D P E Y+HRIGRSGRFG G+AI+ + +D L IEQ T+I +P +
Sbjct: 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390
Query: 202 SLHSY 206
SL+
Sbjct: 391 SLYVA 395
Score = 153 bits (388), Expect = 5e-45
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
+ C GGTNL +D+ +L+ H++ GTPGRV D+ R+V + + ++DEAD+M
Sbjct: 116 CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
L++ FK I + +LPP Q
Sbjct: 176 LSRDFKTIIEQILSFLPPTHQS 197
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 229 bits (586), Expect = 1e-77
Identities = 49/123 (39%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
WLT +M + VS + G++ ++R I++ FR G +VLITT+V ARGIDV+QV++V
Sbjct: 47 AKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIV 106
Query: 142 INYDLPNNR------ELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEM 195
+N+DLP + E Y+HRIGR+GRFG+KG+A + ++ D++ L I+ ++++ I ++
Sbjct: 107 VNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQL 166
Query: 196 PMN 198
Sbjct: 167 NAE 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 225 bits (577), Expect = 2e-76
Identities = 54/115 (46%), Positives = 78/115 (67%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V+ LT+++ + + +HG M Q++R +M EF+ G R L+ TDV ARGID++ +SLV
Sbjct: 48 VNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLV 107
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196
INYDLP +E Y+HR GR+GR G KG AISFV + + R L DIE+Y +I ++
Sbjct: 108 INYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 222 bits (569), Expect = 5e-75
Identities = 44/125 (35%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
+ L + + E NF ++H MPQ+ER ++F+ R+L+ T+++ RG+D+++V++
Sbjct: 43 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 102
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSD-DIRILRDIEQYYSTQIDEMPMNG 199
NYD+P + + Y+HR+ R+GRFG KG+AI+FV + D +IL D++ + I E+P
Sbjct: 103 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162
Query: 200 KRSLH 204
S +
Sbjct: 163 DISSY 167
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 230 bits (588), Expect = 9e-75
Identities = 48/124 (38%), Positives = 84/124 (67%), Gaps = 7/124 (5%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
WL ++ + V+ + G+M ++R +++ FR G +VL+TT+V ARGIDV+QVS+V
Sbjct: 279 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 338
Query: 142 INYDLPNNR------ELYIHRIGRSGRFGRKGVAISFVKS-DDIRILRDIEQYYSTQIDE 194
IN+DLP ++ E Y+HRIGR+GRFG++G+A++ V S + IL I+++++ +I+
Sbjct: 339 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 398
Query: 195 MPMN 198
+ +
Sbjct: 399 LDTD 402
Score = 130 bits (330), Expect = 2e-36
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEM 60
++ + G L + + +V GTPG V D + + + + IK+ VLDEAD M
Sbjct: 124 ELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180
Query: 61 L-NKGFKEQIYDVYRYLPPATQV 82
+ +G ++Q + R LP Q+
Sbjct: 181 IATQGHQDQSIRIQRMLPRNCQM 203
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 229 bits (586), Expect = 9e-74
Identities = 48/124 (38%), Positives = 84/124 (67%), Gaps = 7/124 (5%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
WL ++ + V+ + G+M ++R +++ FR G +VL+TT+V ARGIDV+QVS+V
Sbjct: 346 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 405
Query: 142 INYDLPNNR------ELYIHRIGRSGRFGRKGVAISFVKS-DDIRILRDIEQYYSTQIDE 194
IN+DLP ++ E Y+HRIGR+GRFG++G+A++ V S + IL I+++++ +I+
Sbjct: 406 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465
Query: 195 MPMN 198
+ +
Sbjct: 466 LDTD 469
Score = 130 bits (328), Expect = 8e-36
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEM 60
++ + G L + + +V GTPG V D + + + + IK+ VLDEAD M
Sbjct: 191 ELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247
Query: 61 L-NKGFKEQIYDVYRYLPPATQV 82
+ +G ++Q + R LP Q+
Sbjct: 248 IATQGHQDQSIRIQRMLPRNCQM 270
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 225 bits (577), Expect = 3e-73
Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
L + + E NF ++H MPQ+ER ++F+ R+L+ T+++ RG+D+++V++
Sbjct: 263 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 322
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKS-DDIRILRDIEQYYSTQIDEMPMN 198
NYD+P + + Y+HR+ R+GRFG KG+AI+FV +D +IL D++ + I E+P
Sbjct: 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380
Score = 137 bits (347), Expect = 4e-39
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
NV+ GG ++ +D L H+V GTPGR+ + R + L ++IK +LDE D+M
Sbjct: 105 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 164
Query: 61 LNK-GFKEQIYDVYRYLPPATQV 82
L + + + +++R P QV
Sbjct: 165 LEQLDMRRDVQEIFRMTPHEKQV 187
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 220 bits (564), Expect = 2e-71
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 8/125 (6%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
+ L K++ VS +HGD+ +ERD ++ +FR G S+VLITT+V ARGID+ VS+V
Sbjct: 256 ANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMV 315
Query: 142 INYDLPN------NRELYIHRIGRSGRFGRKGVAISFVKS-DDIRILRDIEQYY-STQID 193
+NYDLP + YIHRIGR+GRFGRKGVAISFV + IL I++Y+ ++
Sbjct: 316 VNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMT 375
Query: 194 EMPMN 198
+P +
Sbjct: 376 RVPTD 380
Score = 128 bits (324), Expect = 9e-36
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
+ + + + V+ GTPG V D++RR++++ + IK+ VLDEAD M
Sbjct: 102 TKITSQLIVPDSFE----KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157
Query: 61 LNK-GFKEQIYDVYRYLPPATQV 82
L++ G +Q V R+LP TQ+
Sbjct: 158 LDQQGLGDQCIRVKRFLPKDTQL 180
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 160 bits (406), Expect = 2e-50
Identities = 48/127 (37%), Positives = 70/127 (55%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V L +REA + G+M Q +R+ +K G VL+ TDV ARGID+ VS V
Sbjct: 43 VHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHV 102
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKR 201
N+D+P + + Y+HRIGR+ R GRKG AIS V++ D +L + +Y I ++ R
Sbjct: 103 FNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELR 162
Query: 202 SLHSYPA 208
P+
Sbjct: 163 PKTRAPS 169
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 158 bits (403), Expect = 6e-49
Identities = 47/83 (56%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADE 59
M CHACIGGTN+ +++KL H+V GTPGRVFDM+ RR L + IKM VLDEADE
Sbjct: 125 MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE 184
Query: 60 MLNKGFKEQIYDVYRYLPPATQV 82
ML++GFK+QIY++++ L + QV
Sbjct: 185 MLSRGFKDQIYEIFQKLNTSIQV 207
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 156 bits (397), Expect = 3e-48
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
M+++ HACIGGT+ ED L +V GTPGRVFD I+RR RT IKM +LDEADEM
Sbjct: 109 MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
L+ GFKEQIY ++ LPP TQV
Sbjct: 168 LSSGFKEQIYQIFTLLPPTTQV 189
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 159 bits (404), Expect = 1e-47
Identities = 47/117 (40%), Positives = 72/117 (61%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
L +R+ F ++HGD+ Q +R+ +++ F+ R+LI TDV +RGIDV ++
Sbjct: 250 DTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 309
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPM 197
VINY LP N E Y+HRIGR+GR G+KG AIS + + + LR IE+ +I ++
Sbjct: 310 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366
Score = 87.6 bits (218), Expect = 8e-21
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 10 GGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQI 69
GG + ++ L ++V GTPGR+ D I R L +N+K +LDEADEMLN GF + +
Sbjct: 110 GGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDV 168
Query: 70 YDVYRYLPPATQV 82
+ ++
Sbjct: 169 EKILNACNKDKRI 181
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 154 bits (392), Expect = 1e-47
Identities = 39/118 (33%), Positives = 64/118 (54%)
Query: 80 TQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS 139
+ + + + + ++HGD+ Q ER+ ++ FR G RVL+ TDV ARG+D+ QV
Sbjct: 42 AETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVD 101
Query: 140 LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPM 197
LV++Y LP+ E Y HR GR+GR GR G + + R + +E+ + +
Sbjct: 102 LVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 152 bits (386), Expect = 9e-46
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
+ + + + + ++HGDM Q ER+ +M FR G RVL+ TDV ARG+D+ QV L
Sbjct: 40 ETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDL 99
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPM 197
V++Y +P+ E Y HR GR+GR GR G + + R + +E+ + +
Sbjct: 100 VVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 146 bits (372), Expect = 3e-43
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
V L A + GD+PQ R+ + FR G +LITTDV +RG+D+ V V
Sbjct: 233 VAKLVRLFDNA----IELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKV 288
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQY 187
IN+D P + YIHRIGR+GR GRKG AI+F+ ++ + +++++
Sbjct: 289 INFDAPQDLRTYIHRIGRTGRMGRKGEAITFI-LNEYWLEKEVKKV 333
Score = 79.9 bits (198), Expect = 4e-18
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 10 GGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQI 69
GG + ++ +V TPGR+ D+ + V+ + +++++DEAD M GF + I
Sbjct: 92 GGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDI 150
Query: 70 YDVYRYLPPATQV 82
+
Sbjct: 151 KIILAQTSNRKIT 163
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 141 bits (358), Expect = 7e-43
Identities = 44/103 (42%), Positives = 66/103 (64%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
D L + + + +S+HGD Q++R+ + +FRSG S +L+ T V ARG+D+ V
Sbjct: 58 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 117
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRD 183
VIN+DLP++ E Y+HRIGR+GR G G+A SF +I I +D
Sbjct: 118 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 160
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 146 bits (371), Expect = 2e-42
Identities = 44/104 (42%), Positives = 67/104 (64%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
D L + + + +S+HGD Q++R+ + +FRSG S +L+ T V ARG+D+ V
Sbjct: 288 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 347
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDI 184
VIN+DLP++ E Y+HRIGR+GR G G+A SF +I I +D+
Sbjct: 348 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 391
Score = 77.2 bits (191), Expect = 7e-17
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 8 CIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKE 67
GG ++ + +R L+ G H++ TPGR+ DM+ R + K LVLDEAD ML+ GF+
Sbjct: 135 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 194
Query: 68 QI 69
QI
Sbjct: 195 QI 196
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 141 bits (357), Expect = 3e-42
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61
++CH IGGT LS+D +L H+ G+PGR+ +I L +I++ +LDEAD++L
Sbjct: 121 GLECHVFIGGTPLSQDKTRLKKC-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 179
Query: 62 NKG-FKEQIYDVYRYLPPATQV 82
+G F+EQI +Y LP + Q+
Sbjct: 180 EEGSFQEQINWIYSSLPASKQM 201
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 148 bits (375), Expect = 3e-42
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 81 QVDWLTEKMREAN---FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ 137
+L ++ + HG + Q +R ++K F+ S +L+ TDV ARG+D
Sbjct: 351 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN 410
Query: 138 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196
V V+ +P+ YIHRIGR+ R G++G ++ F+ D++ +R++E + I +
Sbjct: 411 VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469
Score = 84.1 bits (208), Expect = 3e-19
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 1 MNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLR-TRNIKMLVLDEAD 58
C + +GGT+ + K++ ++V TPGR+ D++ + + R + VLDEAD
Sbjct: 177 KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236
Query: 59 EMLNKGFKEQIYDVYRYLPP 78
+L GF++ + + L
Sbjct: 237 RLLEIGFRDDLETISGILNE 256
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 137 bits (348), Expect = 2e-41
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
VD + E + ++HG Q+ER ++ FR G VL+ TDV ++G+D +
Sbjct: 66 DVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH 125
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFV-KSDDIRILRD 183
VINYD+P E Y+HRIGR+G G G+A +F+ K+ D +L D
Sbjct: 126 VINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMD 169
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 146 bits (369), Expect = 3e-41
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 81 QVDWLTEKMREAN---FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQ 137
+L ++ + HG + Q +R ++K F+ S +L+ TDV ARG+D
Sbjct: 300 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN 359
Query: 138 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMP 196
V V+ +P+ YIHRIGR+ R G++G ++ F+ D++ +R++E + I +
Sbjct: 360 VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418
Score = 84.1 bits (208), Expect = 4e-19
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 1 MNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLR-TRNIKMLVLDEAD 58
C + +GGT+ + K++ ++V TPGR+ D++ + + R + VLDEAD
Sbjct: 126 KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185
Query: 59 EMLNKGFKEQIYDVYRYLP 77
+L GF++ + + L
Sbjct: 186 RLLEIGFRDDLETISGILN 204
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 143 bits (362), Expect = 5e-41
Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
D+L + E F +S+HGD Q +R+ +++F++G+ +VLI T V +RG+D++ +
Sbjct: 312 GADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH 371
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSD-DIRILRDI 184
VINYD+P+ + Y+HRIGR+GR G G A SF + D I D+
Sbjct: 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416
Score = 78.0 bits (193), Expect = 3e-17
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61
++ GGT+ + G HVV TPGR+ D + R + + + +VLDEAD ML
Sbjct: 157 YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRML 216
Query: 62 NKGFKEQI 69
+ GF E +
Sbjct: 217 DMGFSEDM 224
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 135 bits (342), Expect = 4e-40
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61
+ A GGTNL +D+ +LD HVV TPGR+ D+I++ V + +++M+VLDEAD++L
Sbjct: 100 GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159
Query: 62 NKGFKEQIYDVYRYLPPATQV 82
++ F + + D+ LP Q+
Sbjct: 160 SQDFVQIMEDIILTLPKNRQI 180
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 132 bits (335), Expect = 4e-38
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADEM 60
++ + G L + + +V GTPG V D + + + + IK+ VLDEAD M
Sbjct: 191 ELKLAYAVRGNKLERGQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247
Query: 61 L-NKGFKEQIYDVYRYLPPATQV 82
+ +G ++Q + R LP Q+
Sbjct: 248 IATQGHQDQSIRIQRMLPRNCQM 270
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 128 bits (324), Expect = 2e-37
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYG-QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
NV+ GG ++ +D L H+V GTPGR+ + R + L ++IK +LDE D+M
Sbjct: 111 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170
Query: 61 L-NKGFKEQIYDVYRYLPPATQV 82
L + + +++R P QV
Sbjct: 171 LEQLDMRRDVQEIFRMTPHEKQV 193
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 102 bits (255), Expect = 7e-26
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVW----ARGIDV-Q 136
L E ++ F V + + ++F+ G +LI + RG+D+ +
Sbjct: 265 GKELYEYLKRFKFNVGETWSEFEK-----NFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 137 QVSLVINYDLPNNREL--YIHRIGRSGRFGRKGV--AISFVKSDDIRILRDIEQYYSTQI 192
++ VI + P+ ++ YI GRS R + +S + +D I ++
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIA 379
Query: 193 DEMPM 197
+E +
Sbjct: 380 EEEII 384
Score = 57.4 bits (139), Expect = 4e-10
Identities = 18/169 (10%), Positives = 44/169 (26%), Gaps = 27/169 (15%)
Query: 9 IGGTNLSEDLRKLD----YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG 64
E + H++ + V R L + + +D+ D +L
Sbjct: 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK--NREKLSQKRFDFVFVDDVDAVLKAS 155
Query: 65 FKEQIYDVYRYLPPATQ-----------VDWLTEKMREANFTVSSMHGDMPQKERDGIMK 113
+ +P + + ++ VSS P+ R + +
Sbjct: 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAK-PRGIRPLLFR 214
Query: 114 EFRSGT-SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161
+ + T R++ ++ V I+ +
Sbjct: 215 DLLNFTVGRLVSVAR------NITHV--RISSRSKEKLVELLEIFRDGI 255
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 93.8 bits (234), Expect = 5e-24
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61
+ IGGT+ + L KL+ H+V GTPGR+ D IR + L +LV+DEAD ML
Sbjct: 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163
Query: 62 NKGFKEQIYDVYRYLPPATQV 82
+ GF + + +P Q+
Sbjct: 164 DMGFITDVDQIAARMPKDLQM 184
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 86.1 bits (214), Expect = 3e-21
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 9 IGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQ 68
GGT + L G V TPGR D +R+ VL +++ VLDEADEML+ GF+E+
Sbjct: 105 YGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEE 164
Query: 69 IYDVYRYLPPATQV 82
+ + PP+ Q
Sbjct: 165 VEALLSATPPSRQT 178
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 85.6 bits (211), Expect = 1e-19
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 62 NKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGD--------MPQKERDGIMK 113
+ K ++ YR + ++ + G + Q+E+ I+
Sbjct: 359 KQNSKIIVFTNYRET-----AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILD 413
Query: 114 EFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFV 173
EF G VL+ T V G+DV +V LV+ Y+ + I R GR+GR G I +
Sbjct: 414 EFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVIILM 472
Query: 174 KSDDIRILRDIEQYYSTQIDEMPMN 198
RD Y+S++ E M
Sbjct: 473 AKGT----RDEAYYWSSRQKEKIMQ 493
Score = 37.1 bits (85), Expect = 0.003
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWL 85
V+ TP + + + + ++ ++V DEA + I Y+ V L
Sbjct: 103 KVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGL 162
Query: 86 T 86
T
Sbjct: 163 T 163
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 78.0 bits (193), Expect = 6e-18
Identities = 26/81 (32%), Positives = 37/81 (45%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
++ GG +R L+ G + TPGR+ D + R LVLDEAD M
Sbjct: 129 CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM 188
Query: 61 LNKGFKEQIYDVYRYLPPATQ 81
L+ GF+ QI + + P Q
Sbjct: 189 LDMGFEPQIRKIVDQIRPDRQ 209
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 77.2 bits (191), Expect = 1e-17
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 6 HACI-GGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKG 64
+ GG + +R++ G H++ TPGR+ D I + + K +VLDEAD ML+ G
Sbjct: 131 SCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG 190
Query: 65 FKEQI 69
F+ QI
Sbjct: 191 FEPQI 195
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 76.2 bits (188), Expect = 4e-17
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADE 59
+ VQ +GG + L H++ TPGR+ D + + R +K LV+DEAD
Sbjct: 138 IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197
Query: 60 MLNKGFKEQIYDVYRYLPPATQ 81
+LN F+ ++ + + +P +
Sbjct: 198 ILNMDFETEVDKILKVIPRDRK 219
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 74.1 bits (183), Expect = 2e-16
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML 61
++ GG N + + + G ++ TPGR+ D+ + R+I LV+DEAD+ML
Sbjct: 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180
Query: 62 NKGFKEQIYDVYRYLPPATQ 81
+ F+ QI + + P Q
Sbjct: 181 DMEFEPQIRKILLDVRPDRQ 200
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 72.7 bits (179), Expect = 5e-16
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFD-MIRRRVLRTRNIKMLVLDEADE 59
+ IGG +L + +++ +++ TPGR+ M +++MLVLDEAD
Sbjct: 124 HDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182
Query: 60 MLNKGFKEQIYDVYRYLPPATQ 81
+L+ GF + + V LP Q
Sbjct: 183 ILDMGFADTMNAVIENLPKKRQ 204
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 70.0 bits (172), Expect = 8e-15
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRNIKMLVLDEADE 59
+GG+N S + +KL G +++ TPGR+ D ++ +N++ LV+DEAD
Sbjct: 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212
Query: 60 MLNKGFKEQIYDVYRYLPP--------ATQ 81
+L+ GF+E++ + + LP ATQ
Sbjct: 213 ILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 64.9 bits (159), Expect = 5e-13
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 2 NVQCHACIGGTNLSEDL-RKLDYGQHVVSGTPGRVFDMIRRRVLRT--RNIKMLVLDEAD 58
+ H ++ K ++ TP R+ ++++ +++ LV+DE+D
Sbjct: 126 GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185
Query: 59 EMLNK---GFKEQIYDVYRYLPP 78
++ GF++Q+ ++
Sbjct: 186 KLFEDGKTGFRDQLASIFLACTS 208
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 63.9 bits (155), Expect = 3e-12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 82 VDWLTEKMREA-NFTVSSMHGDMPQKERDGIMKEFRSGTS--RVLITTDVWARGIDVQQV 138
L + +RE + H M ERD F + +VL+ +++ + G + Q
Sbjct: 516 ALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFA 575
Query: 139 SLVINYDLPNNRELYIHRIGRSGRFGRK 166
S ++ +DLP N +L RIGR R G+
Sbjct: 576 SHMVMFDLPFNPDLLEQRIGRLDRIGQA 603
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 61.1 bits (147), Expect = 3e-11
Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 62 NKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHG--------DMPQKERDGIMK 113
N + ++ R L A + E + G M + G++
Sbjct: 629 NPQTRTLLFAKTRALVSAL-KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687
Query: 114 EFRSGTS-RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISF 172
F++ R+LI T V GID+ Q +LV+ Y+ N I GR GR I
Sbjct: 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILV 745
Query: 173 VKSDDIRILRDIEQYYSTQIDEMPMN 198
+E + E MN
Sbjct: 746 TSKT-----EVVENEKCNRYKEEMMN 766
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 60.8 bits (146), Expect = 4e-11
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 16/126 (12%)
Query: 82 VDWLTEKMREANFTVSSMHG--------DMPQKERDGIMKEFR-SGTSRVLITTDVWARG 132
+W+ + + + G M + I+ F+ SG +LI T V G
Sbjct: 415 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474
Query: 133 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQI 192
ID+ Q +LVI Y+ N I GR R + IE+
Sbjct: 475 IDIAQCNLVILYEYVGNVIKMIQTRGRGRA--RGSKCFLLTSNAG-----VIEKEQINMY 527
Query: 193 DEMPMN 198
E MN
Sbjct: 528 KEKMMN 533
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 60.4 bits (145), Expect = 5e-11
Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 62 NKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHG--------DMPQKERDGIMK 113
N + ++ R L A + E + G M + G++
Sbjct: 629 NPQTRTLLFAKTRALVSAL-KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687
Query: 114 EFRSGTS-RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISF 172
F++ R+LI T V GID+ Q +LV+ Y+ N I GR GR I
Sbjct: 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILV 745
Query: 173 VKSDDIRILRDIEQYYSTQIDEMPMN 198
+E + E MN
Sbjct: 746 TSKT-----EVVENEKCNRYKEEMMN 766
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 60.3 bits (145), Expect = 5e-11
Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 22/198 (11%)
Query: 10 GGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQI 69
T L + L + + ++ I + F +
Sbjct: 341 PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400
Query: 70 YDVYRYLPPATQVDWLTEKMREANFTVSSMHG--------DMPQKERDGIMKEFRSGTS- 120
V + E + G M + G++ F++
Sbjct: 401 ALVSAL------KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 454
Query: 121 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRI 180
R+LI T V GID+ Q +LV+ Y+ N I GR GR I
Sbjct: 455 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILVTSKT---- 508
Query: 181 LRDIEQYYSTQIDEMPMN 198
+E + E MN
Sbjct: 509 -EVVENEKCNRYKEEMMN 525
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 58.0 bits (139), Expect = 3e-10
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 82 VDWLTEKMREANFTVSSMHG--------DMPQKERDGIMKEFR-SGTSRVLITTDVWARG 132
W+ E + + G M + +++ FR SG + +LI T V G
Sbjct: 406 KKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465
Query: 133 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQI 192
ID+ + +LVI Y+ N I GR GR R S D IE+ + I
Sbjct: 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GR-ARDSKCFLLTSSAD-----VIEKEKANMI 518
Query: 193 DEMPMN 198
E MN
Sbjct: 519 KEKIMN 524
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 50.2 bits (121), Expect = 1e-07
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
+V+ +++ + ++ H + R + ++F+ ++++ T + GI+ V
Sbjct: 248 KVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 307
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRD-IEQ 186
V+++D+P N E Y GR+GR G A+ F D+ LR +E+
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 48.8 bits (117), Expect = 4e-07
Identities = 20/101 (19%), Positives = 46/101 (45%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
+ +T ++ + H ++ +++ + +++ + +V++ T + GID V V
Sbjct: 280 SEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFV 339
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILR 182
I++ + + E Y GR+GR K I + DI +
Sbjct: 340 IHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 45.2 bits (107), Expect = 7e-06
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 45 RTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMP 104
+ + + + + +L K + ++ L + L + +R V+ H +
Sbjct: 249 KAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR---GGVAFHHAGLG 305
Query: 105 QKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI-----NYDLPNNRELYIHRI-- 157
+ ER + + FR G + ++ T + GI+ VI Y + I +
Sbjct: 306 RDERVLVEENFRKGIIKAVVATPTLSAGINT-PAFRVIIRDIWRYSDFGMERIPIIEVHQ 364
Query: 158 --GRSGRFG--RKGVAISFVKSDDIR 179
GR+GR G I SDD R
Sbjct: 365 MLGRAGRPKYDEVGEGIIVSTSDDPR 390
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 44.0 bits (104), Expect = 1e-05
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 94 FTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELY 153
F + ++ ++ER+ I++ FR+G R ++++ V GIDV ++ + + Y
Sbjct: 369 FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREY 428
Query: 154 IHRIGR 159
I R+GR
Sbjct: 429 IQRLGR 434
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 43.0 bits (102), Expect = 3e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV 135
F + MHG + Q+E+D +M EF G +L++T V GIDV
Sbjct: 613 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 42.7 bits (100), Expect = 5e-05
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 27/108 (25%)
Query: 75 YLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARG-- 132
+ + D L K+ + + + + + V++ TD G
Sbjct: 402 FCHSKKKCDELAAKLSGLGINAVAYYRGLD-------VSVIPTIGDVVVVATDALMTGYT 454
Query: 133 IDV-------QQVSLVINYDLPNNREL-----------YIHRIGRSGR 162
D V+ +++ L + R GR+GR
Sbjct: 455 GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502
Score = 26.9 bits (59), Expect = 6.8
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 19 RKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
R + G V T G+ + +++ DE
Sbjct: 292 RTITTGAPVTYSTYGK---FLADGGCSGGAYDIIICDECHST 330
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 40.3 bits (93), Expect = 2e-04
Identities = 13/82 (15%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT-DVWARGIDVQQVSL 140
+ + ++ V + G++ + R+ + +G +++ + V++ GI V+ +
Sbjct: 360 GKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419
Query: 141 VINYDLPNNRELYIHRIGRSGR 162
V+ ++ + + IGR R
Sbjct: 420 VVLAHGVKSKIIVLQTIGRVLR 441
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 39.1 bits (90), Expect = 7e-04
Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 21/165 (12%)
Query: 45 RTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMP 104
R + VLD A E L+ + + ++ ++ + ++G +P
Sbjct: 300 YKRLTPISVLDHALESLDNLRPGDCIVCFS----KNDIYSVSRQIEIRGLESAVIYGSLP 355
Query: 105 QKERDGIMKEFRSGTSRV--LITTDVWARGIDVQQVSLVIN----YDLPNNRELYIHRI- 157
+ K+F L+ TD G+++ ++ + E + I
Sbjct: 356 PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPIT 415
Query: 158 --------GRSGRFGRKGVA--ISFVKSDDIRILRDIEQYYSTQI 192
GR+GRF + ++ + +D+ +L++I + I
Sbjct: 416 TSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPI 460
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 36.0 bits (84), Expect = 0.006
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINY 144
LT+ ++E V+ +H ++ ER I+++ R G VL+ ++ G+D+ +VSLV
Sbjct: 461 LTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAIL 520
Query: 145 D------LPNNRELYIHRIGRSGR 162
D L + R L I IGR+ R
Sbjct: 521 DADKEGFLRSERSL-IQTIGRAAR 543
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 35.6 bits (83), Expect = 0.008
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 85 LTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINY 144
LT + E +H ++ +R ++++ R G L+ ++ G+D+ +VSLV
Sbjct: 455 LTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAIL 514
Query: 145 D------LPNNRELYIHRIGRSGR 162
D L + R L I IGR+ R
Sbjct: 515 DADKEGFLRSERSL-IQTIGRAAR 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.012
Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 30/173 (17%)
Query: 21 LDYGQHVVSGTPGRVFDMI---RRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLP 77
D + ++S D I + V T + +L + +EM+ K +E + Y++L
Sbjct: 39 QDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 78 PATQVDWLTEKMREANF--TVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV 135
+ + M + ++ D ++V +V R
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYND-----------------NQVFAKYNVS-RLQPY 137
Query: 136 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYY 188
++ + +L + + I G G G+ VA+ S ++ D + ++
Sbjct: 138 LKLRQAL-LELRPAKNVLID--GVLG-SGKTWVALDVCLSYKVQCKMDFKIFW 186
Score = 32.5 bits (73), Expect = 0.11
Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 31/152 (20%)
Query: 16 EDLRKLDYGQHVVSGTPGRVFDMI----RRRVLRTRNIKMLVLDEADEMLNKGFKEQ--- 68
+DL + V++ P R +I R + N K + D+ ++
Sbjct: 316 QDLPRE-----VLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 69 -IYDVYRYL---PPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLI 124
++ L PP+ + +S + D+ + + ++ + L+
Sbjct: 370 EYRKMFDRLSVFPPSA---HIPTI------LLSLIWFDVIKSDVMVVVNKLH---KYSLV 417
Query: 125 TTDVWARGIDVQQVSLVINYDLPNNRELYIHR 156
I + + L + L N L HR
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYAL--HR 447
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 35.2 bits (81), Expect = 0.013
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 100 HGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDL----PNNREL--- 152
H + +R + FR G +V++ T A G+++ VI L ++ +
Sbjct: 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL-PARRVIVRSLYRFDGYSKRIKVS 361
Query: 153 -YIHRIGRSGRFG--RKGVAISFVKSDD 177
Y GR+GR G +G AI V D
Sbjct: 362 EYKQMAGRAGRPGMDERGEAIIIVGKRD 389
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 33.5 bits (77), Expect = 0.049
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 28/96 (29%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLV 141
+ L E + EA + HG M ++E + +M +F VL+ T + GID+
Sbjct: 829 AERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------ 880
Query: 142 INYDLPNNRELYIH---------------RIGRSGR 162
P + I R+GRS
Sbjct: 881 -----PTANTIIIERADHFGLAQLHQLRGRVGRSHH 911
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.078
Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 53/163 (32%)
Query: 53 VLDEADEML--NKGFKEQIYDVYRYLPPATQVDWLTEK---MREANFTVSSMHGDMPQKE 107
V + AD GF I D+ P + + EK +RE N+ S+M +
Sbjct: 1645 VWNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRIRE-NY--SAMIFETIVDG 1699
Query: 108 RDGIMKEFRSGTSRVLITTDVWARGID-------VQQ-----VSLVINYDLPNNRELYI- 154
+ K F+ +T R Q + DL + +
Sbjct: 1700 KLKTEKIFKEINEH---STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL---KSKGLI 1753
Query: 155 --------HRIG-------RSGRFGRKGVAISFVKSDDIRILR 182
H +G + +S + ++
Sbjct: 1754 PADATFAGHSLGEYAALASLAD-------VMSI--ESLVEVVF 1787
Score = 32.7 bits (74), Expect = 0.083
Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 53/161 (32%)
Query: 3 VQCHACIGGTN--LSEDLRKLDYG------QHVVSGTPGRVFDMIRRRVLRTRNIKMLVL 54
VQ + + TN L ++++ VVSG P + L R K
Sbjct: 349 VQDY--VNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQ---SL-YGLNLTLRKAK---- 397
Query: 55 DEADEMLNKG---F-KEQIYDVYRYLP-----------PATQ--VDWLTEKMREANFTVS 97
A L++ F + ++ R+LP PA+ L + +F
Sbjct: 398 --APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN--NVSFNAK 453
Query: 98 SMHGDMPQKE-RDGIMKEFRSGTSRVL------ITTD-V-W 129
+ +P + DG + R + + I V W
Sbjct: 454 DIQ--IPVYDTFDG--SDLRVLSGSISERIVDCIIRLPVKW 490
Score = 30.8 bits (69), Expect = 0.35
Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 87/188 (46%)
Query: 65 FKE--QIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRV 122
F+E +Y Y L V L + E + D
Sbjct: 170 FEELRDLYQTYHVL-----VGDLIKFSAETLSELIRTTLD-------------------- 204
Query: 123 LITTDVWARGIDVQQ------------------VSLVI-------NYDL--------PNN 149
V+ +G+++ + +S + +Y + P
Sbjct: 205 --AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG- 261
Query: 150 RELYIHRIGRSGRFGRKGV----AISFVKSDD------IRILRDIEQYYSTQIDEMPMNG 199
EL + G +G +G+ AI+ S + + + I G
Sbjct: 262 -ELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKAIT-----VLFFI------G 307
Query: 200 KRSLHSYP 207
R +YP
Sbjct: 308 VRCYEAYP 315
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 17/50 (34%)
Query: 24 GQHVVSGTP------GRVFDMIRRRVLRTRNIKMLVL------DEADEML 61
Q+V +G V + ++ + I ++ L +E + L
Sbjct: 1851 QQYVAAGDLRALDTVTNVLN-----FIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 28.5 bits (63), Expect = 1.8
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 131 RGIDVQQVSLVI---NYDLPNNRELYI 154
+ +QV + N LP +++ I
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEI 368
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 31.1 bits (70), Expect = 0.26
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 24/126 (19%)
Query: 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130
++P + + +R++ V + E + ++TTD+
Sbjct: 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT----KLTDWDFVVTTDISE 412
Query: 131 RG--IDV-------QQVSLVINYDLPNNRELY----------IHRIGRSGRFGRKGVAIS 171
G + + VI D P L R GR GR
Sbjct: 413 MGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR-NPAQEDDQ 471
Query: 172 FVKSDD 177
+V S D
Sbjct: 472 YVFSGD 477
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 29.3 bits (66), Expect = 1.00
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 100 HGDMPQKERDGIMKEFRSGTSRVLITTD------------VWARGIDVQQVSLVINYDLP 147
H + + RD I + FR +V++ T V I + YD
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378
Query: 148 NNRELYIHRIGRSGR--FGRKGVAISFVKSDD 177
E Y GR+GR F + G +I V+ +
Sbjct: 379 PIME-YKQMSGRAGRPGFDQIGESIVVVRDKE 409
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 132 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 169
G+D ++V VI D H++ S + R G A
Sbjct: 235 GVDGREVMDVICQD---------HKLNLSRYYMRPGFA 263
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor,
glucose dehydrogenas structural genomics, NPPSFA; 1.90A
{Thermus thermophilus}
Length = 352
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 107 ERDGIMKEFRSGTSRVLITTDVWARG----IDVQQVSLVINYDLPNNRELYIHRIGRSG 161
ER G ++ FR G V+ RG + + ++ P +Y +R G
Sbjct: 48 ERPGRIRLFREGRLSTYAELSVYHRGESGLLGL-----ALHPRFPQEPYVYAYRTVAEG 101
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 28.3 bits (63), Expect = 1.9
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 20/112 (17%)
Query: 71 DVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWA 130
++ Q + +++A V ++ + E +S +ITTD+
Sbjct: 173 RTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKC----KSEKWDFVITTDISE 228
Query: 131 RG--IDVQQV----SLVINYDLPNNRELY----------IHRIGRSGRFGRK 166
G +V + L + R GR GR K
Sbjct: 229 MGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 2.3
Identities = 27/202 (13%), Positives = 46/202 (22%), Gaps = 45/202 (22%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEAD-E 59
M V + + + D PG+ R + L+ +
Sbjct: 1197 MGVPIYGIVAMAATATD------KIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRK 1250
Query: 60 MLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMH-GDMP--QKER-DGIMKEF 115
+ QI D +++ L + D ER I E
Sbjct: 1251 RQLVTREAQIKD-----WVENELEAL-------KLEAEEIPSEDQNEFLLERTREIHNEA 1298
Query: 116 RSGTSRVL--ITTDVWAR--------------GIDVQQVSLVINYDL--PNNR--ELYIH 155
S D + R G+ + + + + N E
Sbjct: 1299 ESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATI 1358
Query: 156 R--IGRSGRFGRKGVAISFVKS 175
+ GR V F K
Sbjct: 1359 NEMMKHLGRSEGNPVIGVFQKF 1380
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes
str}
Length = 179
Score = 27.5 bits (61), Expect = 2.5
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 12/91 (13%)
Query: 104 PQKERDGIMKEFRSGTSRVLITTD-----VWARGIDVQQVSLVINYDLPNNRELYIHRIG 158
+ I + G + T + DL ++ Y+HRI
Sbjct: 51 HGFDVHNIEQRIELGEVALFETEAGALAGAMIIRKTPSDWDTDLWEDLAIDKAYYLHRIM 110
Query: 159 RSGRFGRKGV-------AISFVKSDDIRILR 182
S F + A + +R
Sbjct: 111 VSRAFSGISLSKQMIYFAEKLGIEMSVPFIR 141
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase,
aldose sugar dehydrogenase, BET propeller fold,
oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum}
PDB: 3a9h_A*
Length = 354
Score = 27.7 bits (62), Expect = 2.9
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 107 ERDGIMKEFRSGTSRVLITTDVWARG----IDVQQVSLVINYDLPNNRELYI 154
ER G + +++ + DV G + + ++ + P +Y+
Sbjct: 46 ERPGRLVLISPSGKKLVASFDVANVGEAGLLGL-----ALHPEFPKKSWVYL 92
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Length = 970
Score = 27.5 bits (61), Expect = 4.1
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML--NKGFKEQIYDVYRYLPP-- 78
Y + +V+ +R + + T+ + + + ++L + K+ + Y+
Sbjct: 844 YDELLVAEELKPFGKQLRDKYVETQQLLLQIAGH-KDILEGDPFLKQGLVLRNPYITTLN 902
Query: 79 ATQVDWLTEKMREANFTVS---------SMHGDMPQKERDGIMKEFRSGTSRVLITT 126
Q L +++R+ NF V+ + + E+ G LI T
Sbjct: 903 VFQAYTL-KRIRDPNFKVTPQPPLSKEFADENKPAGLVKLNPASEYPPGLEDTLILT 958
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 27.2 bits (61), Expect = 4.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 38 MIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANF 94
M R L I +L+L+ + + FK Y +LP A L + + A+
Sbjct: 5 MTERLSLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHI 61
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like
family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena
SP}
Length = 252
Score = 26.3 bits (57), Expect = 7.0
Identities = 7/65 (10%), Positives = 27/65 (41%)
Query: 37 DMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTV 96
D + ++++ + + L + L + K+ ++ + P ++ + +R++ V
Sbjct: 68 DPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQV 127
Query: 97 SSMHG 101
+
Sbjct: 128 NQFKS 132
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 26.6 bits (59), Expect = 7.2
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 23 YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML--NKGFKEQIYDVYRYLPP-- 78
Y Q +V + +R + +L + ++ E I Y P
Sbjct: 782 YDQRLVDKALWPLGKELRNLQEEDIKV-VLAIANDSHLMADLPWIAESIQLRNIYTDPLN 840
Query: 79 ATQVDWLTEKMREAN 93
Q + L + R+A
Sbjct: 841 VLQAELL-HRSRQAE 854
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 26.4 bits (58), Expect = 7.9
Identities = 12/129 (9%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 36 FDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYR---------YLPPATQVDWLT 86
+++ ++ ++L ++ + G Q Y + L ++
Sbjct: 7 INLVLKKPTE----EVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQ 62
Query: 87 EKMREANFTVSSMHG--DMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINY 144
+ + ++ H + +++E +V + + G D ++V V+
Sbjct: 63 KAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLAS 122
Query: 145 DLPNNRELY 153
++ + +
Sbjct: 123 EILEKGDYW 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,425,140
Number of extensions: 208648
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 109
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)