RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6712
(210 letters)
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 98.5 bits (244), Expect = 1e-26
Identities = 107/118 (90%), Positives = 115/118 (97%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
+VDWLTEKMREANFTVSSMHGDMPQKER+ IMKEFRSG SRVLI+TDVWARG+DV QVSL
Sbjct: 46 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 105
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
+INYDLPNNRELYIHRIGRSGR+GRKGVAI+FVK+DDIRILRDIEQYYSTQIDEMPMN
Sbjct: 106 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 163
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 101 bits (252), Expect = 2e-26
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 14/102 (13%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKER----------DGIMKEFRSGTSRVLITTDVWA 130
+ D L K+ + + + + +G +I +
Sbjct: 48 KCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCV 107
Query: 131 RG---IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 169
+ + LP + R GR+GR G+ G+
Sbjct: 108 TQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIY 148
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 97.3 bits (241), Expect = 2e-26
Identities = 77/116 (66%), Positives = 101/116 (87%)
Query: 83 DWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI 142
+ LT K+R FTVS+++ D+PQ+ERD IMKEFRSG+SR+LI+TD+ ARGIDVQQVSLVI
Sbjct: 41 EELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 100
Query: 143 NYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMN 198
NYDLP N+E YIHRIGR GRFGRKGVAI+FV ++D+ +R++E++YSTQI+E+P +
Sbjct: 101 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 156
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 91.9 bits (227), Expect = 4e-23
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 50 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGD------- 102
KM L E + ++Q + + + ++ + G
Sbjct: 144 KMDKLKEIIREQLQ--RKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 201
Query: 103 -MPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 161
+ Q+E+ I+ EF G VL+ T V G+DV +V LV+ Y+ + I R GR+G
Sbjct: 202 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTG 261
Query: 162 RFGRKGVAISFVKSDDIRILRDIEQYYSTQ 191
R G I + RD Y+S++
Sbjct: 262 R-HMPGRVIILMAKGT----RDEAYYWSSR 286
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 82.0 bits (202), Expect = 5e-20
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
N++ GG + ++ L ++V GTPGR+ D I R L +N+K +LDEADEM
Sbjct: 99 KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 157
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
LN GF + + + ++
Sbjct: 158 LNMGFIKDVEKILNACNKDKRI 179
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 80.0 bits (196), Expect = 9e-20
Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
L +R+ F ++HGD+ Q +R+ +++ F+ R+LI TDV +RGIDV ++
Sbjct: 40 DTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNC 99
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEM 195
VINY LP N E Y+HRIGR+GR G+KG AIS + + + LR IE+ +I ++
Sbjct: 100 VINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 80.4 bits (197), Expect = 9e-20
Identities = 49/123 (39%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
WLT +M + VS + G++ ++R I++ FR G +VLITT+V ARGIDV+QV++
Sbjct: 44 NAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTI 103
Query: 141 VINYDLPNNR------ELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDE 194
V+N+DLP + E Y+HRIGR+GRFG+KG+A + ++ D++ L I+ ++++ I +
Sbjct: 104 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQ 163
Query: 195 MPM 197
+
Sbjct: 164 LNA 166
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 81.7 bits (201), Expect = 1e-19
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 82 VDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITT----DVWARGIDVQQ 137
+ + E ++ + + G ++F G LI T RG+D+ +
Sbjct: 38 AEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 91
Query: 138 -VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEM 195
+ + P+ + I + V + ++ + + IDE+
Sbjct: 92 RIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 146
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 77.8 bits (190), Expect = 8e-19
Identities = 50/121 (41%), Positives = 74/121 (61%)
Query: 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN 143
L +K+ + ++ H M Q+ER+ + EFR G R L+ +D+ RGID+Q V++VIN
Sbjct: 47 LLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN 106
Query: 144 YDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSL 203
+D P E Y+HRIGRSGRFG G+AI+ + +D L IEQ T+I +P +SL
Sbjct: 107 FDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSL 166
Query: 204 H 204
+
Sbjct: 167 Y 167
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 71.4 bits (174), Expect = 2e-16
Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 53 VLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIM 112
++ E E + + + + LT+ ++EA V+ +H ++ ER I+
Sbjct: 20 LIGEIRERVERNER-----TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEII 74
Query: 113 KEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNREL-----YIHRIGRSGRFGRKG 167
++ R G VL+ ++ G+D+ +VSLV D L I IGR+ R
Sbjct: 75 RDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGH 134
Query: 168 VAISFVKS--------DDIRILRDIEQYYSTQIDEMPMNGKRSL 203
V + + + R I++ Y+ + +P K+ +
Sbjct: 135 VIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEI 178
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 69.5 bits (169), Expect = 2e-15
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 88 KMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLP 147
F + ++ ++ER+ I++ FR+G R ++++ V GIDV ++ +
Sbjct: 107 YRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS 166
Query: 148 NNRELYIHRIGRSGRFGRKGVAISFV 173
+ YI R+GR R +
Sbjct: 167 GSAREYIQRLGRILRPSKGKKEAVLY 192
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 62.2 bits (150), Expect = 3e-12
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 23/168 (13%)
Query: 29 SGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEK 88
+ TP D + + + + + + ++ + ++P + +
Sbjct: 138 TATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAAC 197
Query: 89 MREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDV---------QQVS 139
+R+ V + E ++TTD+ G + + +
Sbjct: 198 LRKNGKKVIQLSRKTFDSEYIKTRTNDW----DFVVTTDISEMGANFKAERVIDPRRCMK 253
Query: 140 LVINYDLPNNREL----------YIHRIGRSGRFGRKGVAISFVKSDD 177
VI D L R GR GR + +
Sbjct: 254 PVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 58.9 bits (142), Expect = 1e-11
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 53 VLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIM 112
+++ E +G + + + LT + E +H ++ +R ++
Sbjct: 20 LMEGIRERAARGER-----TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALI 74
Query: 113 KEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR--IGRSGRFGRKGVAI 170
++ R G L+ ++ G+D+ +VSLV D L R I GR R
Sbjct: 75 RDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGE 134
Query: 171 SFVKSDDI--RILRDIEQ 186
++ +D + + R IE+
Sbjct: 135 VWLYADRVSEAMQRAIEE 152
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 57.8 bits (139), Expect = 1e-11
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVS- 139
+ D L K+ + + + + + V++ TD G S
Sbjct: 47 KCDELAAKLVALGINAVAYYRGLD-------VSVIPTNGDVVVVATDALMTGFTGDFDSV 99
Query: 140 --LVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDD 177
+ P + R GR+GR G+ G+ FV +
Sbjct: 100 IDCNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 57.9 bits (139), Expect = 4e-11
Identities = 76/82 (92%), Positives = 79/82 (96%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
MNVQCHACIGGTN+ ED+RKLDYGQHVV+GTPGRVFDMIRRR LRTR IKMLVLDEADEM
Sbjct: 112 MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 171
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
LNKGFKEQIYDVYRYLPPATQV
Sbjct: 172 LNKGFKEQIYDVYRYLPPATQV 193
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 57.0 bits (136), Expect = 9e-11
Identities = 25/120 (20%), Positives = 53/120 (44%)
Query: 81 QVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSL 140
+V+ +++ + ++ H + R + ++F+ ++++ T + GI+ V
Sbjct: 42 KVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 101
Query: 141 VINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGK 200
V+++D+P N E Y GR+GR G A+ F D+ LR + + K
Sbjct: 102 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHK 161
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 55.8 bits (133), Expect = 1e-10
Identities = 44/122 (36%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 84 WLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVIN 143
L + + E NF ++H MPQ+ER ++F+ R+L+ T+++ RG+D+++V++ N
Sbjct: 42 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 101
Query: 144 YDLPNNRELYIHRIGRSGRFGRKGVAISFV-KSDDIRILRDIEQYYSTQIDEMPMNGKRS 202
YD+P + + Y+HR+ R+GRFG KG+AI+FV +D +IL D++ + I E+P S
Sbjct: 102 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDIS 161
Query: 203 LH 204
+
Sbjct: 162 SY 163
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 51.4 bits (122), Expect = 8e-09
Identities = 39/82 (47%), Positives = 47/82 (57%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
G + + +V GTPGRVFD I+RR RT IKM +LDEADEM
Sbjct: 104 HMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 163
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
L+ GFKEQIY ++ LPP TQV
Sbjct: 164 LSSGFKEQIYQIFTLLPPTTQV 185
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 48.9 bits (116), Expect = 5e-08
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Query: 50 KMLVLDEADEMLNKGFKEQIYDVY-RYLPPATQVDWLTEKMREANFTVSSMHGDMPQKER 108
M+V + + +G Q+Y +Y + L E + EA ++ HG M ++E
Sbjct: 17 SMVVREAILREILRG--GQVYYLYNDVENIQKAAERLAELVPEAR--IAIGHGQMREREL 72
Query: 109 DGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGRKG 167
+ +M +F VL+ T + GID+ + +I + GR GR +
Sbjct: 73 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 132
Query: 168 VAISFVKSD 176
A
Sbjct: 133 YAWLLTPHP 141
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 48.8 bits (115), Expect = 7e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 96 VSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVI-------NYDLPN 148
+ H + +R + FR G +V++ T A G+++ +++ Y
Sbjct: 97 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRI 156
Query: 149 NRELYIHRIGRSGRFGR--KGVAISFVKSDDIRILRDIEQYYSTQID 193
Y GR+GR G +G AI V D I +++Y + +
Sbjct: 157 KVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA--VKRYIFGEPE 201
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 47.5 bits (112), Expect = 2e-07
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 25 QHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 82
H++ GTPGRVFDM+ RR L + IKM VLDEADEML++GFK+QIYD+++ L TQV
Sbjct: 132 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 189
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 44.2 bits (103), Expect = 2e-06
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 1 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEM 60
+ A GGTNL +D+ +LD HVV TPGR+ D+I++ V + +++M+VLDEAD++
Sbjct: 99 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL 158
Query: 61 LNKGFKEQIYDVYRYLPPATQV 82
L++ F + + D+ LP Q+
Sbjct: 159 LSQDFVQIMEDIILTLPKNRQI 180
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 43.4 bits (101), Expect = 8e-06
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 36 FDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFT 95
+ + V + KMLVLD M +++ V Y +D + R +
Sbjct: 88 QNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNY---TQTLDLFEKLCRNRRYL 144
Query: 96 VSSMHGDMPQKERDGIMKEFRSGTS---RVLITTDVWARGIDVQQVSLVINYDLPNNREL 152
+ G M K+R I++ F + +S ++++ G+++ + ++ +D N
Sbjct: 145 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 204
Query: 153 YIHRIGRSGRFGRK 166
+ R R G+K
Sbjct: 205 DEQAMARVWRDGQK 218
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 42.6 bits (99), Expect = 1e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 5 CHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEML-N 62
GG ++ +D L H+V GTPGR+ + R + L ++IK +LDE D+ML
Sbjct: 101 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 160
Query: 63 KGFKEQIYDVYRYLPPATQV 82
+ + +++R P QV
Sbjct: 161 LDMRRDVQEIFRMTPHEKQV 180
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 39.5 bits (91), Expect = 1e-04
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 25/95 (26%)
Query: 26 HVVSGTPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNK-----------GFKEQIYDVYR 74
+V T + R + + +D+ D +L GF +
Sbjct: 144 KIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSW 199
Query: 75 YLPPATQVDWLTEKMREA----------NFTVSSM 99
+ T ++ NF + S
Sbjct: 200 VGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSS 234
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 38.3 bits (89), Expect = 2e-04
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 38 MIRR----RVLRTRNIKML-VLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREA 92
++R + RT K V ++ + G + V + +++ ++
Sbjct: 3 VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAV-----ETSELISKLLKNK 57
Query: 93 NFTVSSMHGDMPQKERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYD------- 145
++ ++E I + + G V I T++ RG D++ V
Sbjct: 58 GIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGT 115
Query: 146 -LPNNRELYIHRIGRSGRFGRKGVAISFVKSDD 177
+R + GRSGR G G+ ++ +D
Sbjct: 116 ERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 38.0 bits (88), Expect = 4e-04
Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 29/176 (16%)
Query: 49 IKMLVLDEADEMLNKGFK---EQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQ 105
I+ + D E N G +LP + + +R+A +V ++ +
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFE 72
Query: 106 KERDGIMKEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPNNRELY------------ 153
+E + ++ TD+ G ++ V V++ L
Sbjct: 73 RE----YPTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPL 127
Query: 154 -------IHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQI--DEMPMNGK 200
R GR GR + + + + D M + G
Sbjct: 128 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 183
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 233
Score = 32.1 bits (72), Expect = 0.030
Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 6/153 (3%)
Query: 59 EMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKERDGIMKEFRSG 118
+ N + I +Y + EK+ NF++ + +R G +
Sbjct: 7 SLENHYNSKFIEKLYSLGLTGGEW-VAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDF 65
Query: 119 TSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDI 178
+I + VQ ++ + +++ G + F DI
Sbjct: 66 FGYEIILKNYADSIKAVQD---IMETSAVVSYQVFGEFAGPGIQKNVDYCDKDF-YVFDI 121
Query: 179 RILRDIEQYYSTQIDEMPMNGKR-SLHSYPARY 210
+ + M P
Sbjct: 122 IVTTESGDVTYVDDYMMESFCNTFKFKMAPLLG 154
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 31.3 bits (69), Expect = 0.061
Identities = 11/74 (14%), Positives = 25/74 (33%)
Query: 31 TPGRVFDMIRRRVLRTRNIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMR 90
TP + + + + ++ ++V DEA + I Y+ V LT
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167
Query: 91 EANFTVSSMHGDMP 104
+ + ++
Sbjct: 168 STPEKIMEVINNLG 181
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 25.0 bits (54), Expect = 5.1
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 49 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVDWLTEKMREANFTVSSMHGDMPQKER 108
IK L+++ + + + Y + A + L E +R+A+F + +
Sbjct: 5 IKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVI 64
Query: 109 DGIM 112
+
Sbjct: 65 NAAE 68
>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana) [TaxId: 8400]}
Length = 111
Score = 24.8 bits (54), Expect = 5.5
Identities = 1/24 (4%), Positives = 8/24 (33%)
Query: 25 QHVVSGTPGRVFDMIRRRVLRTRN 48
+H+++ ++ +
Sbjct: 9 KHIINTPIINCNTIMDNNIYIVGG 32
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), C-domain
{Escherichia coli [TaxId: 562]}
Length = 79
Score = 24.0 bits (52), Expect = 6.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 142 INYDLPNNRELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQ 186
+NYD +++H + R GRK ++ SD R+ +E
Sbjct: 14 VNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA 58
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 25.2 bits (55), Expect = 7.2
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 150 RELYIHRIGRSGRFGRKGVAISFVKSDDIRILRDIEQYYSTQIDEMPMNGKRSLHSY 206
++Y+HR + + DDI R YY+ ++ P + ++Y
Sbjct: 645 DQVYMHR-----------DMLPEPRLDDIERFRQEGFYYTNMLEAPPEIDRVVQYTY 690
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 283
Score = 24.7 bits (54), Expect = 9.3
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 2 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMI---RRRVL--RTRNIKMLVLDE 56
Q A I +D Y G+ V + + ++ + I+ + DE
Sbjct: 187 RPQSQAYI-----PKDEGDFYYLGGFFGGSVQEVQRLTRACHQAMMVDQANGIEAVWHDE 241
Query: 57 ADEMLNKGF 65
+ LNK
Sbjct: 242 S--HLNKYL 248
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 837,778
Number of extensions: 39141
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 39
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)