BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6714
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 50 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 109
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 110 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 169
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 170 DAVTGLSGSGPAYAF 184
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 50 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 109
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 110 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 169
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 170 DAVTGLSGSGPAYAF 184
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 70 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 129
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 130 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 189
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 190 DAVTGLSGSGPAYAF 204
>pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|B Chain B, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|C Chain C, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|D Chain D, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
pdb|2RCY|E Chain E, Crystal Structure Of Plasmodium Falciparum Pyrroline
Carboxylate Reductase (Mal13p1.284) With Nadp Bound
Length = 262
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
N+E+ + ++I+ AVKP I LN+IKP + S LLIS+ GG+ I +E+ + ++I+
Sbjct: 52 NEELARHCDIIVCAVKPDIAGSVLNNIKP-YLSSKLLISICGGLNIGKLEEXVGSENKIV 110
Query: 230 RAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289
PNTP LV +G+ ++ + + D + V ++F S G E+ E D T +SG GP
Sbjct: 111 WVXPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDXDIATAISGCGP 170
Query: 290 AYRY 293
AY Y
Sbjct: 171 AYVY 174
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL-ISVAGGVPIKNMEQA 221
G T DN++ LN++V++LAVKPH + ++K + +E+ +L IS+A GV +E+
Sbjct: 50 GVHTTQDNRQGALNADVVVLAVKPHQIKXVCEELKDILSETKILVISLAVGVTTPLIEKW 109
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV-PEYLLDG 280
L K SRI+RA PNTP+ VR GA+ + ++ ++VG V E ++
Sbjct: 110 LGKASRIVRAXPNTPSSVRAGATGLFANETVDKDQKNLAESIXRAVGLVIWVSSEDQIEK 169
Query: 281 ITGLSGSGPAYRYEV 295
I LSGSGPAY + +
Sbjct: 170 IAALSGSGPAYIFLI 184
>pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr38b
Length = 247
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 79/133 (59%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
G T DN EV N++++IL++KP + +N+IK + +++++A G I++ E A
Sbjct: 50 GLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAF 109
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGIT 282
K +++R PNTPALV +G S +++D + V+N+F S G E V E L D +T
Sbjct: 110 NKKVKVVRVXPNTPALVGEGXSALCPNEXVTEKDLEDVLNIFNSFGQTEIVSEKLXDVVT 169
Query: 283 GLSGSGPAYRYEV 295
+SGS PAY Y +
Sbjct: 170 SVSGSSPAYVYXI 182
>pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase
From Neisseria Meningitides Mc58
pdb|2AG8|A Chain A, Nadp Complex Of Pyrroline-5-Carboxylate Reductase From
Neisseria Meningitidis
Length = 263
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNT 235
+ +V+ILAVKP A +I+ L++SVA G+ + + + L RI+R PNT
Sbjct: 57 SDDVLILAVKPQDXEAACKNIR---TNGALVLSVAAGLSVGTLSRYLGGTRRIVRVXPNT 113
Query: 236 PALVRQGASVFVRGSSASDQDAQTVINLFKSVG-TCEEVPEYLLDGITGLSGSGPAYRY 293
P + G S + S+ D + + KSVG T E GITG+SGSGPAY +
Sbjct: 114 PGKIGLGVSGXYAEAEVSETDRRIADRIXKSVGLTVWLDDEEKXHGITGISGSGPAYVF 172
>pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AMF|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 178 EVIILAVKPHIVPVALNDIKPV-FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236
+++IL +KP + L KP+ F + +IS+A G+ ++ + + ++ ++R MPN
Sbjct: 62 DLVILGIKPQLFETVL---KPLHFKQP--IISMAAGISLQRLATFVGQDLPLLRIMPNMN 116
Query: 237 ALVRQGASVFVRGSSASDQDAQT-VINLFKSVGTCEEVPEYLLDGITGLSGSGPAYRY 293
A + Q +S + G++ Q+ Q V +L S G+ ++ E D T L+GS PAY Y
Sbjct: 117 AQILQ-SSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIY 173
>pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|B Chain B, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|C Chain C, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|D Chain D, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
pdb|2AHR|E Chain E, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase
From Human Pathogen Streptococcus Pyogenes
Length = 259
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 178 EVIILAVKPHIVPVALNDIKPV-FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236
+++IL +KP + L KP+ F + +IS A G+ ++ + + ++ ++R PN
Sbjct: 62 DLVILGIKPQLFETVL---KPLHFKQP--IISXAAGISLQRLATFVGQDLPLLRIXPNXN 116
Query: 237 ALVRQGASVFVRGSSASDQDAQT-VINLFKSVGTCEEVPEYLLDGITGLSGSGPAYRY 293
A + Q +S + G++ Q+ Q V +L S G+ ++ E D T L+GS PAY Y
Sbjct: 117 AQILQ-SSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIY 173
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 125 SREARWNRSDKQIAGTTERGPGALIASLNIVSKATGTM 162
S ARWN + +AG +E P +A + V+ T+
Sbjct: 62 SEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTL 99
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 125 SREARWNRSDKQIAGTTERGPGALIASLNIVSKATGTM 162
S ARWN + +AG +E P +A + V+ T+
Sbjct: 20 SEAARWNXKENLLAGPSENDPNLFVALYDFVASGDNTL 57
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 125 SREARWNRSDKQIAGTTERGPGALIASLNIVSKATGTM 162
S ARWN + +AG +E P +A + V+ T+
Sbjct: 23 SEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTL 60
>pdb|3G17|A Chain A, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|B Chain B, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|C Chain C, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|D Chain D, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|E Chain E, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|F Chain F, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|G Chain G, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|H Chain H, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
Length = 294
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG------VPIKNMEQAL 222
++VT +VII+AVK H + + + + +E L+I G +P KN+ QA+
Sbjct: 57 EDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEHIPFKNVCQAV 114
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 112 TRADATEAP---TTPSSREARWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKITF 168
T+AD EAP +P A S GTT G ++ +++ ++ ++
Sbjct: 163 TQADENEAPQVDISPDDVVALPYSS-----GTTGLPKGVMLTHKGLIT----SVAQQVDG 213
Query: 169 DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNM 218
DN + +SE +IL V P ALN I +L + G PI M
Sbjct: 214 DNPNLYFHSEDVILCVLPMFHIYALNSI--------MLCGLRVGAPILIM 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,446,466
Number of Sequences: 62578
Number of extensions: 326515
Number of successful extensions: 528
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 18
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)