Query psy6714
Match_columns 303
No_of_seqs 189 out of 1598
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:33:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0345 ProC Pyrroline-5-carbo 100.0 6.3E-35 1.4E-39 271.9 17.6 168 132-301 1-185 (266)
2 PRK12491 pyrroline-5-carboxyla 100.0 1.7E-34 3.6E-39 269.8 18.3 169 132-301 2-188 (272)
3 PRK06928 pyrroline-5-carboxyla 100.0 4E-31 8.6E-36 247.0 17.8 168 132-301 1-188 (277)
4 PTZ00431 pyrroline carboxylate 100.0 6.3E-31 1.4E-35 243.5 16.7 169 131-301 2-181 (260)
5 PRK07679 pyrroline-5-carboxyla 100.0 1.7E-28 3.6E-33 228.9 18.7 168 132-300 3-189 (279)
6 PRK07634 pyrroline-5-carboxyla 100.0 6.5E-28 1.4E-32 219.1 18.1 168 132-301 4-190 (245)
7 PLN02688 pyrroline-5-carboxyla 100.0 1E-27 2.2E-32 220.9 18.7 167 133-301 1-185 (266)
8 PRK11880 pyrroline-5-carboxyla 100.0 1.2E-27 2.6E-32 220.6 17.4 168 131-301 1-186 (267)
9 TIGR00112 proC pyrroline-5-car 100.0 1.1E-27 2.5E-32 220.2 15.4 142 160-301 27-168 (245)
10 KOG3124|consensus 99.9 9.6E-27 2.1E-31 213.9 15.1 168 133-301 1-186 (267)
11 PRK07680 late competence prote 99.9 2.7E-26 5.9E-31 213.2 16.8 166 133-301 1-185 (273)
12 TIGR00465 ilvC ketol-acid redu 99.9 4.9E-26 1.1E-30 217.1 15.1 168 131-301 2-202 (314)
13 PRK06476 pyrroline-5-carboxyla 99.9 4.4E-23 9.4E-28 190.1 15.1 157 133-300 1-176 (258)
14 PRK07417 arogenate dehydrogena 99.8 2.7E-18 5.8E-23 160.4 13.0 162 133-296 1-188 (279)
15 PLN02256 arogenate dehydrogena 99.8 5.8E-18 1.3E-22 160.9 15.3 169 130-299 34-228 (304)
16 PRK06545 prephenate dehydrogen 99.8 8.9E-18 1.9E-22 162.5 15.6 162 133-296 1-195 (359)
17 PRK14806 bifunctional cyclohex 99.8 5E-18 1.1E-22 177.3 14.8 165 132-300 3-203 (735)
18 PRK07502 cyclohexadienyl dehyd 99.7 1.8E-17 3.9E-22 156.5 14.2 164 132-297 6-201 (307)
19 PRK08507 prephenate dehydrogen 99.7 1.7E-16 3.7E-21 147.7 14.0 159 133-296 1-189 (275)
20 PRK05479 ketol-acid reductoiso 99.7 6.2E-16 1.3E-20 148.7 16.0 167 130-299 15-214 (330)
21 PRK08655 prephenate dehydrogen 99.7 3.4E-16 7.3E-21 155.5 14.5 165 133-298 1-186 (437)
22 COG0287 TyrA Prephenate dehydr 99.7 5.9E-16 1.3E-20 145.8 14.5 168 131-300 2-196 (279)
23 PRK08818 prephenate dehydrogen 99.7 1.4E-15 3E-20 148.3 14.2 159 132-295 4-175 (370)
24 PLN02712 arogenate dehydrogena 99.6 7.6E-15 1.6E-19 152.7 17.8 195 101-300 24-245 (667)
25 PLN02712 arogenate dehydrogena 99.6 2.9E-15 6.4E-20 155.8 14.6 174 125-299 362-561 (667)
26 PRK11199 tyrA bifunctional cho 99.5 3.9E-14 8.5E-19 138.1 11.5 158 132-295 98-262 (374)
27 TIGR01915 npdG NADPH-dependent 99.5 1.9E-13 4.2E-18 123.5 14.7 134 133-270 1-183 (219)
28 PRK06130 3-hydroxybutyryl-CoA 99.5 1.4E-13 3E-18 130.0 14.1 141 132-274 4-179 (311)
29 PRK05808 3-hydroxybutyryl-CoA 99.5 3.6E-13 7.9E-18 125.7 14.9 108 164-273 71-181 (282)
30 PRK07531 bifunctional 3-hydrox 99.5 4.7E-13 1E-17 134.9 14.6 152 131-283 3-188 (495)
31 PF03446 NAD_binding_2: NAD bi 99.5 2.2E-13 4.8E-18 117.8 10.1 137 132-272 1-158 (163)
32 PRK12439 NAD(P)H-dependent gly 99.5 6.9E-13 1.5E-17 127.7 14.2 144 132-277 7-185 (341)
33 PRK00094 gpsA NAD(P)H-dependen 99.5 8.1E-13 1.8E-17 124.4 14.0 143 132-276 1-179 (325)
34 PLN02545 3-hydroxybutyryl-CoA 99.4 1.4E-12 3.1E-17 122.4 13.9 106 167-273 74-181 (295)
35 COG2084 MmsB 3-hydroxyisobutyr 99.4 5.8E-13 1.3E-17 125.8 9.0 139 133-275 1-163 (286)
36 PF03807 F420_oxidored: NADP o 99.4 6.5E-13 1.4E-17 104.2 7.3 77 134-212 1-96 (96)
37 PRK06522 2-dehydropantoate 2-r 99.4 1.2E-11 2.6E-16 115.2 14.5 156 133-292 1-203 (304)
38 PF02153 PDH: Prephenate dehyd 99.4 6.1E-12 1.3E-16 116.7 11.7 139 159-298 27-181 (258)
39 PRK14618 NAD(P)H-dependent gly 99.3 8.8E-12 1.9E-16 118.8 12.8 142 132-278 4-180 (328)
40 PRK06444 prephenate dehydrogen 99.3 1.2E-11 2.7E-16 111.1 12.1 136 133-296 1-142 (197)
41 PRK12557 H(2)-dependent methyl 99.3 1.8E-11 3.8E-16 118.5 13.7 142 159-300 64-226 (342)
42 PRK06035 3-hydroxyacyl-CoA deh 99.3 5.4E-11 1.2E-15 111.6 14.2 107 166-274 76-185 (291)
43 PRK12490 6-phosphogluconate de 99.3 6.2E-11 1.3E-15 112.0 13.6 140 133-275 1-164 (299)
44 PRK14619 NAD(P)H-dependent gly 99.3 5.4E-11 1.2E-15 112.7 13.2 141 131-276 3-155 (308)
45 PRK06129 3-hydroxyacyl-CoA deh 99.3 2.4E-10 5.3E-15 108.3 17.0 146 132-279 2-187 (308)
46 PRK07530 3-hydroxybutyryl-CoA 99.3 1.1E-10 2.3E-15 109.6 14.4 108 164-273 72-181 (292)
47 COG0240 GpsA Glycerol-3-phosph 99.3 4.8E-11 1E-15 114.5 11.9 144 132-277 1-179 (329)
48 COG2085 Predicted dinucleotide 99.2 9.3E-11 2E-15 106.2 12.1 137 132-273 1-178 (211)
49 TIGR00872 gnd_rel 6-phosphoglu 99.2 2.4E-10 5.3E-15 108.0 15.5 133 133-269 1-153 (298)
50 PTZ00345 glycerol-3-phosphate 99.2 1.9E-10 4.2E-15 112.3 14.7 144 131-277 10-204 (365)
51 PRK08293 3-hydroxybutyryl-CoA 99.2 3.3E-10 7.1E-15 106.3 15.6 120 163-283 71-193 (287)
52 PRK09599 6-phosphogluconate de 99.2 5.3E-10 1.2E-14 105.6 15.9 139 133-275 1-165 (301)
53 PF10727 Rossmann-like: Rossma 99.2 2.6E-11 5.7E-16 102.0 6.2 104 129-233 7-127 (127)
54 PRK15059 tartronate semialdehy 99.2 1.3E-10 2.9E-15 109.8 11.2 139 133-276 1-162 (292)
55 PRK09260 3-hydroxybutyryl-CoA 99.2 3.8E-10 8.2E-15 105.8 14.1 110 164-274 69-181 (288)
56 KOG0409|consensus 99.2 1.6E-10 3.5E-15 109.4 11.2 139 131-274 34-197 (327)
57 PRK15461 NADH-dependent gamma- 99.2 7.6E-10 1.7E-14 104.5 15.7 141 132-275 1-163 (296)
58 PRK11559 garR tartronate semia 99.2 4.7E-10 1E-14 105.1 13.6 138 131-274 1-163 (296)
59 PLN02350 phosphogluconate dehy 99.1 4.5E-10 9.8E-15 113.5 13.5 136 131-269 5-167 (493)
60 PRK14620 NAD(P)H-dependent gly 99.1 6.2E-10 1.3E-14 105.9 13.7 143 133-277 1-180 (326)
61 PRK06249 2-dehydropantoate 2-r 99.1 1.8E-09 4E-14 102.4 16.0 159 131-291 4-214 (313)
62 PRK08229 2-dehydropantoate 2-r 99.1 1E-09 2.3E-14 104.5 14.3 137 131-274 1-175 (341)
63 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 3E-10 6.5E-15 97.8 8.9 114 134-248 1-149 (157)
64 TIGR03376 glycerol3P_DH glycer 99.1 6.5E-10 1.4E-14 107.7 11.8 113 164-277 70-195 (342)
65 PRK12921 2-dehydropantoate 2-r 99.1 1.7E-09 3.7E-14 101.1 13.8 142 133-276 1-177 (305)
66 KOG2380|consensus 99.1 1.1E-09 2.4E-14 105.3 12.6 165 121-286 40-231 (480)
67 PTZ00142 6-phosphogluconate de 99.1 1.2E-09 2.6E-14 109.9 12.5 135 132-270 1-162 (470)
68 TIGR01692 HIBADH 3-hydroxyisob 99.0 3.8E-09 8.2E-14 99.1 14.0 135 137-277 1-160 (288)
69 TIGR01505 tartro_sem_red 2-hyd 99.0 4.5E-09 9.8E-14 98.5 13.7 136 134-275 1-161 (291)
70 PLN02858 fructose-bisphosphate 98.9 6.6E-09 1.4E-13 116.0 11.8 135 133-271 5-163 (1378)
71 PLN02858 fructose-bisphosphate 98.9 1.5E-08 3.2E-13 113.1 13.8 137 132-272 324-484 (1378)
72 COG1893 ApbA Ketopantoate redu 98.9 3E-08 6.6E-13 94.7 13.8 142 133-276 1-176 (307)
73 PRK08268 3-hydroxy-acyl-CoA de 98.9 5.7E-08 1.2E-12 98.6 15.4 141 132-274 7-186 (507)
74 TIGR00873 gnd 6-phosphoglucona 98.8 1.5E-08 3.2E-13 102.1 10.4 133 134-270 1-159 (467)
75 PRK05708 2-dehydropantoate 2-r 98.8 3.6E-08 7.9E-13 93.6 12.1 155 131-288 1-201 (305)
76 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.8 9.5E-08 2.1E-12 97.0 15.6 141 132-274 5-184 (503)
77 PRK07066 3-hydroxybutyryl-CoA 98.8 1.5E-07 3.2E-12 90.6 15.7 141 132-273 7-182 (321)
78 PRK07819 3-hydroxybutyryl-CoA 98.8 1.2E-07 2.7E-12 89.3 14.3 107 166-274 75-186 (286)
79 TIGR03026 NDP-sugDHase nucleot 98.8 8.3E-08 1.8E-12 94.6 13.4 134 133-274 1-199 (411)
80 TIGR01724 hmd_rel H2-forming N 98.7 1.1E-07 2.4E-12 91.3 12.5 128 159-287 64-206 (341)
81 PRK11861 bifunctional prephena 98.7 6.2E-08 1.3E-12 101.3 9.8 119 180-299 1-135 (673)
82 PF02737 3HCDH_N: 3-hydroxyacy 98.6 3.7E-07 8E-12 80.7 12.0 109 163-273 66-177 (180)
83 PF02558 ApbA: Ketopantoate re 98.6 1.9E-07 4.2E-12 78.6 9.2 100 135-236 1-127 (151)
84 PRK11064 wecC UDP-N-acetyl-D-m 98.6 2.9E-07 6.3E-12 91.2 10.4 95 174-270 73-198 (415)
85 PRK15182 Vi polysaccharide bio 98.5 3.6E-07 7.9E-12 90.9 10.2 135 132-268 6-191 (425)
86 KOG2711|consensus 98.5 7.3E-07 1.6E-11 86.0 11.6 118 164-284 93-226 (372)
87 PRK13403 ketol-acid reductoiso 98.5 1E-06 2.2E-11 85.1 12.6 168 130-301 14-214 (335)
88 PF07991 IlvN: Acetohydroxy ac 98.5 6E-07 1.3E-11 78.6 8.0 135 131-269 3-161 (165)
89 PRK15057 UDP-glucose 6-dehydro 98.3 5.1E-06 1.1E-10 81.9 12.5 127 133-269 1-181 (388)
90 TIGR02440 FadJ fatty oxidation 98.2 2.6E-05 5.7E-10 82.2 15.2 109 164-274 373-484 (699)
91 COG1023 Gnd Predicted 6-phosph 98.2 2.1E-05 4.5E-10 73.2 12.6 132 133-268 1-153 (300)
92 PRK11730 fadB multifunctional 98.2 2.3E-05 5E-10 82.9 14.7 108 164-273 381-491 (715)
93 TIGR02441 fa_ox_alpha_mit fatt 98.2 2.1E-05 4.5E-10 83.5 14.4 108 164-273 403-513 (737)
94 PRK11154 fadJ multifunctional 98.2 2.9E-05 6.3E-10 82.0 14.5 108 164-273 378-488 (708)
95 TIGR02437 FadB fatty oxidation 98.2 3.3E-05 7.2E-10 81.7 14.5 108 164-273 381-491 (714)
96 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 4.1E-06 8.9E-11 74.5 5.8 45 163-207 63-117 (185)
97 PLN02353 probable UDP-glucose 98.1 1.2E-05 2.7E-10 81.2 9.3 58 164-221 66-140 (473)
98 COG1250 FadB 3-hydroxyacyl-CoA 98.1 7.7E-05 1.7E-09 71.6 13.3 98 173-271 79-178 (307)
99 PRK08605 D-lactate dehydrogena 98.0 9.3E-06 2E-10 78.3 6.6 94 129-223 143-251 (332)
100 PRK13304 L-aspartate dehydroge 98.0 1.8E-05 4E-10 73.9 8.3 66 132-198 1-83 (265)
101 PRK05225 ketol-acid reductoiso 98.0 4.4E-05 9.4E-10 76.7 10.6 138 130-270 34-200 (487)
102 COG0059 IlvC Ketol-acid reduct 97.9 0.00014 3E-09 69.7 12.6 168 130-299 16-215 (338)
103 PRK12480 D-lactate dehydrogena 97.9 2.3E-05 5E-10 75.7 7.4 93 130-224 144-250 (330)
104 PRK09287 6-phosphogluconate de 97.9 6.8E-05 1.5E-09 75.6 9.9 105 163-270 38-150 (459)
105 PRK07574 formate dehydrogenase 97.8 5.4E-05 1.2E-09 74.7 8.2 93 130-223 190-299 (385)
106 PRK13243 glyoxylate reductase; 97.8 5.1E-05 1.1E-09 73.3 7.9 94 129-224 147-256 (333)
107 PLN03139 formate dehydrogenase 97.8 7.8E-05 1.7E-09 73.6 8.0 94 130-224 197-307 (386)
108 TIGR00745 apbA_panE 2-dehydrop 97.7 0.00019 4.1E-09 66.4 9.9 102 174-276 57-167 (293)
109 COG4007 Predicted dehydrogenas 97.7 0.0011 2.4E-08 62.4 13.8 121 158-278 64-198 (340)
110 COG0362 Gnd 6-phosphogluconate 97.6 0.00027 5.8E-09 69.8 8.8 133 132-268 3-161 (473)
111 TIGR01327 PGDH D-3-phosphoglyc 97.6 0.00013 2.8E-09 74.7 6.8 94 130-224 136-245 (525)
112 COG1004 Ugd Predicted UDP-gluc 97.6 0.0018 4E-08 64.0 14.2 108 164-273 64-196 (414)
113 PRK13581 D-3-phosphoglycerate 97.5 0.00016 3.4E-09 74.0 6.8 93 130-224 138-246 (526)
114 PRK08269 3-hydroxybutyryl-CoA 97.5 0.0015 3.3E-08 62.7 12.9 105 170-275 73-180 (314)
115 PRK06436 glycerate dehydrogena 97.5 0.00015 3.3E-09 69.3 5.9 94 130-224 120-225 (303)
116 PRK15469 ghrA bifunctional gly 97.5 0.00033 7.3E-09 67.2 8.1 94 130-224 134-242 (312)
117 PF02826 2-Hacid_dh_C: D-isome 97.5 0.00017 3.7E-09 63.2 5.4 93 130-224 34-143 (178)
118 PRK08410 2-hydroxyacid dehydro 97.5 0.00038 8.2E-09 66.7 7.9 93 129-224 142-248 (311)
119 PLN02928 oxidoreductase family 97.5 0.00035 7.5E-09 68.0 7.6 93 130-224 157-278 (347)
120 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0017 3.6E-08 64.4 12.2 84 132-217 9-137 (436)
121 cd01065 NAD_bind_Shikimate_DH 97.5 0.00012 2.6E-09 61.6 3.8 106 132-242 19-146 (155)
122 PF01408 GFO_IDH_MocA: Oxidore 97.4 0.00067 1.4E-08 54.6 8.0 85 133-221 1-105 (120)
123 PRK15438 erythronate-4-phospha 97.4 0.00036 7.8E-09 68.8 7.3 95 128-223 112-222 (378)
124 PF01113 DapB_N: Dihydrodipico 97.4 0.0003 6.4E-09 58.5 5.7 82 133-218 1-106 (124)
125 PRK13302 putative L-aspartate 97.4 0.00045 9.7E-09 65.0 7.5 65 132-197 6-88 (271)
126 PRK06932 glycerate dehydrogena 97.4 0.00048 1E-08 66.1 7.6 93 130-224 145-249 (314)
127 PRK00257 erythronate-4-phospha 97.3 0.0005 1.1E-08 67.9 7.1 94 129-223 113-222 (381)
128 PRK00436 argC N-acetyl-gamma-g 97.3 0.0021 4.6E-08 62.3 10.9 151 131-289 1-186 (343)
129 PRK00961 H(2)-dependent methyl 97.3 0.0016 3.5E-08 61.8 9.4 125 161-289 126-257 (342)
130 PRK15409 bifunctional glyoxyla 97.2 0.00088 1.9E-08 64.6 7.5 94 129-224 142-252 (323)
131 PRK00048 dihydrodipicolinate r 97.2 0.0011 2.3E-08 61.7 7.6 85 132-220 1-101 (257)
132 COG0111 SerA Phosphoglycerate 97.2 0.00088 1.9E-08 64.8 7.1 94 130-224 140-249 (324)
133 PRK11863 N-acetyl-gamma-glutam 97.2 0.00094 2E-08 64.3 7.2 143 131-290 1-154 (313)
134 PF01118 Semialdhyde_dh: Semia 97.2 0.00065 1.4E-08 55.9 5.0 76 134-213 1-100 (121)
135 PRK06487 glycerate dehydrogena 97.2 0.00088 1.9E-08 64.3 6.5 87 130-224 146-249 (317)
136 PRK14194 bifunctional 5,10-met 97.1 0.0013 2.8E-08 63.1 7.4 66 130-209 157-230 (301)
137 PRK13303 L-aspartate dehydroge 97.1 0.0012 2.5E-08 61.8 6.9 65 132-197 1-82 (265)
138 PRK11790 D-3-phosphoglycerate 97.1 0.0011 2.4E-08 65.9 7.0 94 130-224 149-255 (409)
139 TIGR00036 dapB dihydrodipicoli 97.1 0.0014 3E-08 61.4 7.0 84 132-220 1-109 (266)
140 TIGR02853 spore_dpaA dipicolin 97.0 0.0037 8.1E-08 59.3 9.6 100 130-237 149-266 (287)
141 TIGR01723 hmd_TIGR 5,10-methen 97.0 0.007 1.5E-07 57.6 11.0 126 161-290 124-256 (340)
142 smart00859 Semialdhyde_dh Semi 97.0 0.0016 3.5E-08 53.2 5.9 39 175-213 64-102 (122)
143 TIGR02371 ala_DH_arch alanine 96.9 0.0019 4.1E-08 62.2 6.7 73 132-209 128-221 (325)
144 PLN02306 hydroxypyruvate reduc 96.9 0.0027 5.9E-08 62.8 7.5 95 129-224 162-288 (386)
145 PRK06141 ornithine cyclodeamin 96.9 0.0026 5.7E-08 60.9 7.0 73 131-207 124-216 (314)
146 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0042 9.1E-08 59.3 8.4 83 131-214 177-277 (311)
147 COG1052 LdhA Lactate dehydroge 96.8 0.0038 8.2E-08 60.4 7.7 92 130-223 144-251 (324)
148 KOG0069|consensus 96.7 0.0053 1.1E-07 59.7 7.9 92 131-224 161-269 (336)
149 PRK06223 malate dehydrogenase; 96.7 0.0058 1.3E-07 57.8 8.0 81 132-215 2-124 (307)
150 PRK11579 putative oxidoreducta 96.7 0.034 7.3E-07 53.5 13.0 73 132-207 4-92 (346)
151 COG1712 Predicted dinucleotide 96.7 0.0034 7.3E-08 58.1 5.7 77 133-211 1-94 (255)
152 TIGR01850 argC N-acetyl-gamma- 96.6 0.015 3.3E-07 56.5 10.4 149 133-288 1-185 (346)
153 TIGR01763 MalateDH_bact malate 96.6 0.0045 9.7E-08 59.2 6.6 82 132-216 1-124 (305)
154 TIGR01851 argC_other N-acetyl- 96.5 0.0055 1.2E-07 59.1 6.6 143 133-291 2-154 (310)
155 PRK14188 bifunctional 5,10-met 96.5 0.0055 1.2E-07 58.7 6.5 66 130-209 156-229 (296)
156 PRK14179 bifunctional 5,10-met 96.5 0.0083 1.8E-07 57.2 7.3 66 130-209 156-229 (284)
157 TIGR01921 DAP-DH diaminopimela 96.4 0.021 4.6E-07 55.4 9.7 63 132-195 3-80 (324)
158 COG0002 ArgC Acetylglutamate s 96.4 0.022 4.7E-07 55.6 9.7 150 131-288 1-188 (349)
159 PRK08300 acetaldehyde dehydrog 96.4 0.01 2.2E-07 57.0 7.3 74 132-208 4-99 (302)
160 PRK05671 aspartate-semialdehyd 96.4 0.015 3.2E-07 56.6 8.3 79 131-213 3-100 (336)
161 PRK04207 glyceraldehyde-3-phos 96.3 0.0095 2E-07 57.9 6.7 72 132-207 1-106 (341)
162 PRK08306 dipicolinate synthase 96.3 0.017 3.8E-07 54.9 8.3 75 132-210 152-241 (296)
163 COG5495 Uncharacterized conser 96.3 0.051 1.1E-06 50.7 10.8 140 132-275 10-170 (289)
164 cd05292 LDH_2 A subgroup of L- 96.2 0.012 2.6E-07 56.2 6.7 81 133-215 1-121 (308)
165 PF00056 Ldh_1_N: lactate/mala 96.2 0.011 2.5E-07 50.1 5.8 81 133-215 1-123 (141)
166 PRK07340 ornithine cyclodeamin 96.0 0.019 4.1E-07 54.8 7.3 73 131-209 124-216 (304)
167 cd01075 NAD_bind_Leu_Phe_Val_D 96.0 0.06 1.3E-06 48.3 9.8 134 130-274 26-179 (200)
168 cd05293 LDH_1 A subgroup of L- 96.0 0.02 4.3E-07 55.0 7.1 99 132-234 3-147 (312)
169 TIGR03215 ac_ald_DH_ac acetald 96.0 0.028 6E-07 53.6 7.9 71 133-207 2-92 (285)
170 KOG2653|consensus 95.9 0.019 4.1E-07 56.5 6.7 132 132-267 6-163 (487)
171 cd05291 HicDH_like L-2-hydroxy 95.9 0.021 4.5E-07 54.3 7.0 81 133-215 1-122 (306)
172 PTZ00117 malate dehydrogenase; 95.8 0.013 2.9E-07 56.2 5.1 82 131-215 4-127 (319)
173 PRK06728 aspartate-semialdehyd 95.6 0.095 2.1E-06 51.3 10.3 145 132-294 5-171 (347)
174 KOG2304|consensus 95.6 0.016 3.4E-07 54.0 4.6 103 166-271 86-192 (298)
175 PRK13301 putative L-aspartate 95.6 0.022 4.7E-07 53.9 5.6 66 132-198 2-84 (267)
176 PRK00066 ldh L-lactate dehydro 95.6 0.058 1.3E-06 51.8 8.5 82 132-215 6-127 (315)
177 PRK15076 alpha-galactosidase; 95.5 0.028 6.1E-07 56.4 6.4 22 165-186 64-85 (431)
178 PRK10206 putative oxidoreducta 95.5 0.13 2.9E-06 49.7 10.7 65 132-196 1-84 (344)
179 cd05297 GH4_alpha_glucosidase_ 95.5 0.063 1.4E-06 53.6 8.6 22 165-186 63-84 (423)
180 COG0673 MviM Predicted dehydro 95.4 0.054 1.2E-06 51.1 7.5 74 131-207 2-95 (342)
181 PLN02383 aspartate semialdehyd 95.4 0.049 1.1E-06 53.1 7.3 78 132-213 7-103 (344)
182 PLN02968 Probable N-acetyl-gam 95.3 0.057 1.2E-06 53.4 7.6 78 131-213 37-137 (381)
183 PRK08618 ornithine cyclodeamin 95.2 0.045 9.7E-07 52.6 6.5 73 132-209 127-220 (325)
184 PLN02602 lactate dehydrogenase 95.2 0.054 1.2E-06 53.0 7.0 103 104-216 17-160 (350)
185 PRK07589 ornithine cyclodeamin 95.0 0.039 8.4E-07 54.0 5.3 77 132-211 129-225 (346)
186 PRK06270 homoserine dehydrogen 94.9 0.067 1.4E-06 51.9 6.7 21 132-153 2-22 (341)
187 COG4074 Mth H2-forming N5,N10- 94.9 0.14 3E-06 47.7 8.3 130 161-293 124-259 (343)
188 PRK02318 mannitol-1-phosphate 94.9 0.055 1.2E-06 53.1 6.1 47 174-220 78-133 (381)
189 cd05290 LDH_3 A subgroup of L- 94.9 0.087 1.9E-06 50.6 7.3 81 134-216 1-125 (307)
190 PTZ00082 L-lactate dehydrogena 94.9 0.12 2.6E-06 49.9 8.3 98 132-232 6-153 (321)
191 PRK00045 hemA glutamyl-tRNA re 94.7 0.051 1.1E-06 54.1 5.6 81 130-211 180-281 (423)
192 PRK06046 alanine dehydrogenase 94.7 0.084 1.8E-06 50.8 6.9 72 132-209 129-222 (326)
193 PF02629 CoA_binding: CoA bind 94.7 0.047 1E-06 43.1 4.3 66 132-198 3-84 (96)
194 KOG2305|consensus 94.7 0.094 2E-06 49.0 6.6 108 166-274 74-184 (313)
195 PRK06823 ornithine cyclodeamin 94.6 0.095 2.1E-06 50.5 6.9 74 132-209 128-221 (315)
196 PRK08040 putative semialdehyde 94.6 0.063 1.4E-06 52.3 5.7 78 131-213 3-100 (336)
197 KOG2666|consensus 94.5 0.28 6E-06 47.9 9.7 64 165-229 67-148 (481)
198 PRK08374 homoserine dehydrogen 94.5 0.15 3.1E-06 49.6 7.9 41 169-212 82-124 (336)
199 COG2423 Predicted ornithine cy 94.5 0.086 1.9E-06 51.3 6.3 74 133-212 131-226 (330)
200 PRK06598 aspartate-semialdehyd 94.4 0.073 1.6E-06 52.5 5.7 77 132-211 1-99 (369)
201 KOG0068|consensus 94.4 0.11 2.4E-06 50.9 6.7 90 132-223 146-251 (406)
202 PF02423 OCD_Mu_crystall: Orni 94.3 0.058 1.3E-06 51.7 4.8 76 132-209 128-223 (313)
203 PTZ00075 Adenosylhomocysteinas 94.2 0.16 3.4E-06 51.8 7.7 78 130-212 252-343 (476)
204 PRK05442 malate dehydrogenase; 94.1 0.29 6.2E-06 47.5 9.0 53 164-216 68-136 (326)
205 PRK14874 aspartate-semialdehyd 94.0 0.13 2.8E-06 49.7 6.4 76 132-211 1-95 (334)
206 PRK06407 ornithine cyclodeamin 93.9 0.14 3.1E-06 48.9 6.5 75 132-211 117-212 (301)
207 cd00650 LDH_MDH_like NAD-depen 93.9 0.26 5.6E-06 45.7 8.0 65 166-232 60-144 (263)
208 PLN00203 glutamyl-tRNA reducta 93.7 0.17 3.7E-06 52.1 7.0 84 130-214 264-373 (519)
209 TIGR00936 ahcY adenosylhomocys 93.6 0.52 1.1E-05 47.2 10.0 85 132-221 195-296 (406)
210 cd01339 LDH-like_MDH L-lactate 93.5 0.15 3.3E-06 48.2 5.9 44 171-215 61-120 (300)
211 PRK05086 malate dehydrogenase; 93.4 0.25 5.5E-06 47.4 7.3 81 133-215 1-123 (312)
212 cd01338 MDH_choloroplast_like 93.4 0.29 6.3E-06 47.3 7.7 52 165-216 67-134 (322)
213 PRK05476 S-adenosyl-L-homocyst 93.4 0.33 7.2E-06 48.8 8.3 85 131-220 211-312 (425)
214 PRK08664 aspartate-semialdehyd 93.4 0.23 4.9E-06 48.3 7.0 38 171-211 71-108 (349)
215 PTZ00325 malate dehydrogenase; 93.3 0.25 5.4E-06 47.8 7.1 83 131-215 7-130 (321)
216 TIGR01035 hemA glutamyl-tRNA r 93.2 0.32 7E-06 48.4 7.9 54 131-185 179-249 (417)
217 cd01337 MDH_glyoxysomal_mitoch 93.2 0.23 5E-06 47.8 6.5 81 133-215 1-122 (310)
218 COG0039 Mdh Malate/lactate deh 93.1 0.32 7E-06 47.0 7.5 83 133-217 1-125 (313)
219 cd00300 LDH_like L-lactate deh 93.1 0.31 6.8E-06 46.3 7.3 44 171-215 61-120 (300)
220 cd05298 GH4_GlvA_pagL_like Gly 93.1 0.5 1.1E-05 47.7 9.1 64 165-230 63-164 (437)
221 PRK08291 ectoine utilization p 93.1 0.21 4.5E-06 48.2 6.1 73 132-208 132-225 (330)
222 TIGR02992 ectoine_eutC ectoine 92.9 0.22 4.7E-06 48.0 5.9 73 132-209 129-223 (326)
223 PF10100 DUF2338: Uncharacteri 92.9 2 4.3E-05 43.1 12.6 107 168-274 75-200 (429)
224 PLN02494 adenosylhomocysteinas 92.8 0.43 9.3E-06 48.7 8.1 84 132-221 254-355 (477)
225 COG0373 HemA Glutamyl-tRNA red 92.8 0.39 8.5E-06 48.2 7.7 54 131-185 177-247 (414)
226 PRK06349 homoserine dehydrogen 92.8 0.27 5.9E-06 49.1 6.6 74 132-209 3-103 (426)
227 COG2344 AT-rich DNA-binding pr 92.7 0.11 2.4E-06 47.0 3.4 66 131-197 83-167 (211)
228 PLN00112 malate dehydrogenase 92.7 0.55 1.2E-05 47.5 8.7 71 164-234 164-253 (444)
229 cd01080 NAD_bind_m-THF_DH_Cycl 92.6 0.26 5.6E-06 43.4 5.6 71 130-212 42-118 (168)
230 cd05294 LDH-like_MDH_nadp A la 92.6 0.27 6E-06 47.0 6.2 45 171-216 67-127 (309)
231 cd00401 AdoHcyase S-adenosyl-L 92.4 0.63 1.4E-05 46.7 8.6 73 132-209 202-288 (413)
232 TIGR01759 MalateDH-SF1 malate 92.4 0.37 7.9E-06 46.7 6.7 52 165-216 68-135 (323)
233 cd05296 GH4_P_beta_glucosidase 92.4 0.67 1.5E-05 46.4 8.8 96 133-231 1-165 (419)
234 PRK14189 bifunctional 5,10-met 92.2 0.4 8.6E-06 45.8 6.7 66 130-209 156-229 (285)
235 PF00670 AdoHcyase_NAD: S-aden 92.1 0.67 1.5E-05 40.8 7.5 83 132-221 23-124 (162)
236 COG0289 DapB Dihydrodipicolina 92.1 0.52 1.1E-05 44.6 7.1 85 132-220 2-110 (266)
237 TIGR01757 Malate-DH_plant mala 92.1 0.4 8.6E-06 47.7 6.7 53 164-216 108-176 (387)
238 cd05191 NAD_bind_amino_acid_DH 92.0 0.59 1.3E-05 36.0 6.4 64 130-209 21-85 (86)
239 COG0569 TrkA K+ transport syst 91.9 0.8 1.7E-05 41.9 8.1 74 133-207 1-98 (225)
240 COG0136 Asd Aspartate-semialde 91.9 0.31 6.7E-06 47.6 5.5 75 132-210 1-97 (334)
241 PRK13940 glutamyl-tRNA reducta 91.7 0.38 8.3E-06 48.1 6.1 55 130-185 179-251 (414)
242 PRK05472 redox-sensing transcr 91.6 0.15 3.3E-06 45.9 3.0 19 132-151 84-102 (213)
243 PRK09496 trkA potassium transp 91.3 0.71 1.5E-05 45.5 7.6 63 133-196 1-85 (453)
244 cd05197 GH4_glycoside_hydrolas 91.2 2.2 4.8E-05 42.9 11.1 66 165-232 63-166 (425)
245 TIGR00978 asd_EA aspartate-sem 90.9 0.66 1.4E-05 44.9 6.8 37 172-211 69-105 (341)
246 COG0190 FolD 5,10-methylene-te 90.7 0.72 1.6E-05 44.0 6.6 66 130-209 154-227 (283)
247 PRK00683 murD UDP-N-acetylmura 90.5 2.8 6.1E-05 41.4 11.0 64 132-196 3-79 (418)
248 PF01488 Shikimate_DH: Shikima 90.4 0.5 1.1E-05 39.5 4.8 57 130-187 10-86 (135)
249 TIGR01761 thiaz-red thiazoliny 90.4 1.8 3.9E-05 42.4 9.3 83 132-220 3-106 (343)
250 PLN00106 malate dehydrogenase 90.2 0.71 1.5E-05 44.7 6.3 80 133-214 19-139 (323)
251 TIGR01772 MDH_euk_gproteo mala 90.1 0.84 1.8E-05 44.0 6.7 44 171-215 62-121 (312)
252 TIGR01546 GAPDH-II_archae glyc 90.0 0.74 1.6E-05 44.9 6.3 23 164-186 63-85 (333)
253 TIGR01296 asd_B aspartate-semi 90.0 0.61 1.3E-05 45.3 5.7 74 134-211 1-93 (339)
254 COG4408 Uncharacterized protei 89.9 5.9 0.00013 39.1 12.1 104 168-273 77-200 (431)
255 PRK05678 succinyl-CoA syntheta 89.9 1.2 2.5E-05 42.7 7.4 82 132-216 8-103 (291)
256 cd00704 MDH Malate dehydrogena 89.8 0.79 1.7E-05 44.3 6.3 51 165-215 65-131 (323)
257 PRK14175 bifunctional 5,10-met 89.7 0.9 2E-05 43.4 6.5 66 130-209 156-229 (286)
258 cd05212 NAD_bind_m-THF_DH_Cycl 89.6 1.4 3.1E-05 37.6 7.0 71 130-215 26-103 (140)
259 PRK10792 bifunctional 5,10-met 89.1 1.1 2.4E-05 42.8 6.6 66 130-209 157-230 (285)
260 TIGR02354 thiF_fam2 thiamine b 89.1 1 2.2E-05 40.5 6.1 17 130-146 19-35 (200)
261 PRK06392 homoserine dehydrogen 88.8 1 2.2E-05 43.7 6.2 20 133-153 1-20 (326)
262 PF13380 CoA_binding_2: CoA bi 88.7 0.52 1.1E-05 38.7 3.6 98 133-236 1-111 (116)
263 COG1748 LYS9 Saccharopine dehy 88.6 0.8 1.7E-05 45.6 5.5 76 132-211 1-100 (389)
264 PF02882 THF_DHG_CYH_C: Tetrah 88.5 1.5 3.2E-05 38.4 6.5 66 130-209 34-107 (160)
265 PRK06199 ornithine cyclodeamin 88.3 0.8 1.7E-05 45.3 5.3 74 132-207 155-256 (379)
266 CHL00188 hisH imidazole glycer 88.2 1.2 2.6E-05 40.5 5.9 73 132-215 1-86 (210)
267 TIGR01745 asd_gamma aspartate- 88.1 0.87 1.9E-05 45.0 5.3 75 133-210 1-97 (366)
268 TIGR01771 L-LDH-NAD L-lactate 88.0 1.1 2.3E-05 42.9 5.8 51 164-215 52-118 (299)
269 TIGR01758 MDH_euk_cyt malate d 87.7 1.5 3.2E-05 42.5 6.6 48 169-216 68-131 (324)
270 PF02056 Glyco_hydro_4: Family 87.4 0.73 1.6E-05 41.3 4.0 60 134-193 1-90 (183)
271 TIGR02717 AcCoA-syn-alpha acet 87.3 0.83 1.8E-05 46.0 4.8 78 133-213 8-99 (447)
272 PLN02819 lysine-ketoglutarate 87.3 2.7 5.9E-05 46.9 9.0 64 132-196 569-668 (1042)
273 KOG2741|consensus 87.2 2.7 5.8E-05 41.3 8.0 62 132-194 6-91 (351)
274 cd01336 MDH_cytoplasmic_cytoso 86.9 1.8 4E-05 41.7 6.8 49 168-216 70-134 (325)
275 PRK14176 bifunctional 5,10-met 86.8 2.4 5.2E-05 40.6 7.3 65 131-209 163-235 (287)
276 TIGR01019 sucCoAalpha succinyl 86.8 2.3 4.9E-05 40.6 7.2 82 132-216 6-101 (286)
277 PF00899 ThiF: ThiF family; I 86.4 2.5 5.4E-05 34.9 6.5 27 171-197 87-113 (135)
278 COG2910 Putative NADH-flavin r 86.3 2.1 4.5E-05 38.9 6.2 54 133-186 1-72 (211)
279 PF03447 NAD_binding_3: Homose 86.0 1.8 3.9E-05 34.8 5.3 69 139-211 1-91 (117)
280 PRK14192 bifunctional 5,10-met 85.9 2.7 5.8E-05 40.0 7.2 66 130-209 157-230 (283)
281 PRK00421 murC UDP-N-acetylmura 85.8 9.9 0.00021 38.0 11.6 53 132-184 7-74 (461)
282 TIGR00518 alaDH alanine dehydr 85.7 3.9 8.5E-05 40.2 8.4 74 132-210 167-267 (370)
283 PRK14191 bifunctional 5,10-met 85.6 2.5 5.4E-05 40.5 6.8 66 130-209 155-228 (285)
284 TIGR00507 aroE shikimate 5-deh 85.5 1.5 3.3E-05 40.8 5.2 106 132-242 117-244 (270)
285 PRK14170 bifunctional 5,10-met 85.4 3.1 6.6E-05 39.9 7.3 66 130-209 155-228 (284)
286 TIGR00561 pntA NAD(P) transhyd 85.4 2.5 5.4E-05 43.6 7.1 35 172-210 243-284 (511)
287 cd01079 NAD_bind_m-THF_DH NAD 85.2 3 6.5E-05 37.9 6.7 34 170-209 120-155 (197)
288 PRK06153 hypothetical protein; 85.2 2 4.3E-05 42.9 6.1 44 170-215 260-303 (393)
289 TIGR02356 adenyl_thiF thiazole 85.1 3.6 7.8E-05 36.8 7.3 19 130-149 19-37 (202)
290 PRK14186 bifunctional 5,10-met 85.1 3.2 7E-05 39.9 7.3 66 130-209 156-229 (297)
291 COG1486 CelF Alpha-galactosida 84.9 2.2 4.7E-05 43.2 6.3 59 132-190 3-91 (442)
292 PRK06813 homoserine dehydrogen 84.8 2.7 5.9E-05 41.2 6.8 27 132-159 2-28 (346)
293 PRK01710 murD UDP-N-acetylmura 84.7 16 0.00034 36.6 12.4 53 131-184 13-85 (458)
294 PRK04663 murD UDP-N-acetylmura 84.7 17 0.00037 36.1 12.5 22 129-150 3-25 (438)
295 PRK14166 bifunctional 5,10-met 84.6 3.4 7.3E-05 39.5 7.2 70 130-215 155-232 (282)
296 COG0460 ThrA Homoserine dehydr 84.5 2.5 5.5E-05 41.3 6.4 23 132-155 3-25 (333)
297 PRK14171 bifunctional 5,10-met 84.2 3.6 7.7E-05 39.5 7.1 65 131-209 158-230 (288)
298 PRK14172 bifunctional 5,10-met 84.1 3.7 8.1E-05 39.1 7.2 66 130-209 156-229 (278)
299 PRK14187 bifunctional 5,10-met 84.1 3.7 8.1E-05 39.5 7.2 66 130-209 158-231 (294)
300 COG0026 PurK Phosphoribosylami 83.9 1.3 2.8E-05 43.9 4.0 19 132-151 1-19 (375)
301 PRK13146 hisH imidazole glycer 83.5 2.4 5.2E-05 38.2 5.4 73 132-214 1-88 (209)
302 PRK14177 bifunctional 5,10-met 83.2 4.6 0.0001 38.6 7.4 66 130-209 157-230 (284)
303 PRK06718 precorrin-2 dehydroge 83.1 3.2 6.9E-05 37.3 6.1 67 130-197 8-91 (202)
304 PRK14173 bifunctional 5,10-met 83.0 4.4 9.6E-05 38.8 7.2 65 131-209 154-226 (287)
305 COG1064 AdhP Zn-dependent alco 82.7 2.9 6.3E-05 41.0 6.0 81 122-206 154-256 (339)
306 PRK14180 bifunctional 5,10-met 82.4 4.8 0.0001 38.5 7.2 66 130-209 156-229 (282)
307 COG0686 Ald Alanine dehydrogen 82.2 2.2 4.8E-05 41.7 4.9 108 133-240 169-306 (371)
308 PRK14169 bifunctional 5,10-met 82.2 4.8 0.0001 38.5 7.1 65 131-209 155-227 (282)
309 PRK14183 bifunctional 5,10-met 82.2 4.6 0.0001 38.6 7.0 65 131-209 156-228 (281)
310 PF01262 AlaDh_PNT_C: Alanine 82.0 2.1 4.5E-05 37.1 4.3 40 171-210 97-139 (168)
311 PRK12475 thiamine/molybdopteri 81.9 5.6 0.00012 38.7 7.7 28 170-197 110-137 (338)
312 PLN02897 tetrahydrofolate dehy 81.9 4.3 9.2E-05 39.9 6.8 69 130-214 212-288 (345)
313 cd01486 Apg7 Apg7 is an E1-lik 81.9 3.7 8.1E-05 39.7 6.3 41 171-213 103-143 (307)
314 PRK14193 bifunctional 5,10-met 81.8 2.4 5.2E-05 40.6 4.9 67 131-209 157-231 (284)
315 PRK14182 bifunctional 5,10-met 81.6 5.3 0.00012 38.2 7.2 65 131-209 156-228 (282)
316 PLN02516 methylenetetrahydrofo 81.6 5.1 0.00011 38.6 7.1 66 130-209 165-238 (299)
317 PRK05690 molybdopterin biosynt 81.4 3.4 7.3E-05 38.3 5.7 26 171-196 117-142 (245)
318 PF02254 TrkA_N: TrkA-N domain 81.4 9.9 0.00021 30.0 7.8 58 135-193 1-79 (116)
319 PLN02616 tetrahydrofolate dehy 81.1 4.6 0.0001 40.0 6.8 69 130-214 229-305 (364)
320 PRK12549 shikimate 5-dehydroge 80.9 2.2 4.8E-05 40.3 4.4 108 132-243 127-258 (284)
321 cd05311 NAD_bind_2_malic_enz N 80.5 6.4 0.00014 36.0 7.2 43 169-215 90-133 (226)
322 PRK14185 bifunctional 5,10-met 80.5 4.6 9.9E-05 38.9 6.4 70 130-209 155-232 (293)
323 PF05368 NmrA: NmrA-like famil 80.4 4.7 0.0001 35.9 6.1 51 135-186 1-74 (233)
324 cd01492 Aos1_SUMO Ubiquitin ac 80.1 6.5 0.00014 35.1 6.9 17 130-146 19-35 (197)
325 COG0118 HisH Glutamine amidotr 80.0 3.4 7.3E-05 37.7 5.0 73 132-215 1-86 (204)
326 cd00757 ThiF_MoeB_HesA_family 80.0 6.2 0.00013 35.8 6.9 26 171-196 106-131 (228)
327 PRK14106 murD UDP-N-acetylmura 79.9 38 0.00083 33.4 13.0 54 131-185 4-77 (450)
328 PF03435 Saccharop_dh: Sacchar 79.6 3.7 7.9E-05 39.9 5.5 35 171-208 62-96 (386)
329 TIGR00853 pts-lac PTS system, 79.2 7.9 0.00017 30.8 6.4 52 132-187 3-61 (95)
330 PRK14181 bifunctional 5,10-met 79.1 7.1 0.00015 37.4 7.2 70 130-209 151-228 (287)
331 PF13460 NAD_binding_10: NADH( 79.1 2.8 6.1E-05 35.6 4.1 50 135-185 1-69 (183)
332 PRK00141 murD UDP-N-acetylmura 78.9 4.7 0.0001 40.7 6.3 66 122-188 5-88 (473)
333 PRK09436 thrA bifunctional asp 78.9 8 0.00017 42.1 8.3 28 131-159 464-491 (819)
334 cd01076 NAD_bind_1_Glu_DH NAD( 78.9 6.7 0.00014 36.0 6.7 98 130-236 29-160 (227)
335 cd01487 E1_ThiF_like E1_ThiF_l 78.8 8.4 0.00018 33.7 7.1 13 134-146 1-13 (174)
336 PRK00676 hemA glutamyl-tRNA re 78.8 3.6 7.9E-05 40.3 5.2 21 130-151 172-192 (338)
337 PF13241 NAD_binding_7: Putati 78.7 2.4 5.1E-05 33.8 3.3 68 130-197 5-81 (103)
338 PRK06719 precorrin-2 dehydroge 78.3 4.1 8.9E-05 35.2 4.9 68 130-198 11-92 (157)
339 PRK09424 pntA NAD(P) transhydr 78.1 6.4 0.00014 40.6 7.0 15 132-146 165-179 (509)
340 TIGR01381 E1_like_apg7 E1-like 77.8 4.4 9.6E-05 43.0 5.8 37 171-209 443-479 (664)
341 PRK14167 bifunctional 5,10-met 77.6 8 0.00017 37.3 7.1 74 130-215 155-236 (297)
342 cd01078 NAD_bind_H4MPT_DH NADP 77.4 4.9 0.00011 35.2 5.2 57 131-188 27-109 (194)
343 PRK09496 trkA potassium transp 77.3 13 0.00029 36.5 8.9 76 131-207 230-328 (453)
344 PRK14174 bifunctional 5,10-met 77.1 8.8 0.00019 36.9 7.2 70 130-209 157-234 (295)
345 PTZ00187 succinyl-CoA syntheta 77.0 6.2 0.00013 38.3 6.2 82 132-216 29-126 (317)
346 KOG0023|consensus 76.8 41 0.00089 33.2 11.6 135 122-268 169-321 (360)
347 COG4091 Predicted homoserine d 76.6 32 0.00069 34.4 10.8 19 131-149 16-34 (438)
348 PRK08644 thiamine biosynthesis 76.6 6.9 0.00015 35.4 6.1 17 130-146 26-42 (212)
349 PRK01438 murD UDP-N-acetylmura 76.3 39 0.00084 33.8 11.9 53 131-184 15-86 (480)
350 TIGR02130 dapB_plant dihydrodi 76.2 9.5 0.00021 36.4 7.1 85 134-222 2-112 (275)
351 PRK14190 bifunctional 5,10-met 75.9 8.8 0.00019 36.7 6.8 66 130-209 156-229 (284)
352 PRK04148 hypothetical protein; 75.2 9.2 0.0002 32.6 6.1 77 132-210 17-111 (134)
353 PRK14168 bifunctional 5,10-met 75.1 9.8 0.00021 36.6 6.9 69 130-209 159-236 (297)
354 cd01485 E1-1_like Ubiquitin ac 74.0 11 0.00023 33.7 6.6 17 130-146 17-33 (198)
355 PRK03659 glutathione-regulated 73.9 14 0.00031 38.6 8.4 75 132-208 400-496 (601)
356 PF03059 NAS: Nicotianamine sy 73.9 14 0.0003 35.3 7.5 34 174-207 190-227 (276)
357 PF05222 AlaDh_PNT_N: Alanine 73.5 9.6 0.00021 32.2 5.8 62 156-223 44-106 (136)
358 PRK07411 hypothetical protein; 72.7 14 0.0003 36.6 7.6 26 171-196 123-148 (390)
359 TIGR02355 moeB molybdopterin s 72.5 13 0.00027 34.4 6.8 26 171-196 109-134 (240)
360 PRK05600 thiamine biosynthesis 72.5 15 0.00033 36.2 7.7 26 171-196 126-151 (370)
361 PF03720 UDPG_MGDP_dh_C: UDP-g 72.4 2.8 6.1E-05 33.6 2.2 50 162-211 52-102 (106)
362 PRK09310 aroDE bifunctional 3- 72.2 5 0.00011 40.8 4.5 101 131-243 331-447 (477)
363 PRK14178 bifunctional 5,10-met 72.1 11 0.00024 36.0 6.4 66 130-209 150-223 (279)
364 TIGR01082 murC UDP-N-acetylmur 71.5 58 0.0013 32.4 11.8 51 134-184 1-66 (448)
365 TIGR01532 E4PD_g-proteo D-eryt 71.4 9.3 0.0002 37.1 5.9 20 176-195 89-108 (325)
366 PRK14004 hisH imidazole glycer 70.6 11 0.00024 34.1 5.9 71 135-215 2-84 (210)
367 KOG1495|consensus 70.5 33 0.00072 33.2 9.1 62 173-236 85-166 (332)
368 PRK00258 aroE shikimate 5-dehy 70.0 9.4 0.0002 35.7 5.5 109 131-243 122-252 (278)
369 PRK06901 aspartate-semialdehyd 70.0 5.6 0.00012 38.8 4.0 75 132-211 3-96 (322)
370 smart00846 Gp_dh_N Glyceraldeh 69.9 4 8.6E-05 35.1 2.7 18 133-151 1-18 (149)
371 cd01483 E1_enzyme_family Super 69.5 25 0.00055 29.0 7.5 13 134-146 1-13 (143)
372 PLN03075 nicotianamine synthas 68.5 24 0.00052 34.0 7.9 34 174-207 193-230 (296)
373 PRK09466 metL bifunctional asp 68.3 12 0.00026 40.8 6.5 27 132-159 458-484 (810)
374 PRK07878 molybdopterin biosynt 68.1 21 0.00045 35.4 7.7 26 171-196 127-152 (392)
375 PRK05597 molybdopterin biosynt 67.8 18 0.00039 35.3 7.1 26 171-196 113-138 (355)
376 PF00185 OTCace: Aspartate/orn 67.8 14 0.0003 31.9 5.7 23 164-186 61-83 (158)
377 PRK07688 thiamine/molybdopteri 67.4 16 0.00034 35.6 6.6 27 171-197 111-137 (339)
378 PRK14184 bifunctional 5,10-met 67.4 17 0.00037 34.8 6.6 69 131-209 156-232 (286)
379 PRK01390 murD UDP-N-acetylmura 67.3 10 0.00022 37.8 5.4 53 131-184 8-73 (460)
380 TIGR01809 Shik-DH-AROM shikima 66.8 5.9 0.00013 37.3 3.4 55 132-187 125-201 (282)
381 COG2875 CobM Precorrin-4 methy 66.2 14 0.0003 34.7 5.5 11 132-142 2-12 (254)
382 PRK02705 murD UDP-N-acetylmura 65.1 61 0.0013 32.1 10.4 17 134-151 2-18 (459)
383 TIGR01470 cysG_Nterm siroheme 65.0 23 0.0005 31.9 6.7 64 130-193 7-86 (205)
384 PRK03562 glutathione-regulated 65.0 28 0.0006 36.7 8.3 75 132-207 400-496 (621)
385 TIGR01087 murD UDP-N-acetylmur 64.9 1E+02 0.0022 30.3 11.9 50 134-184 1-70 (433)
386 PF10087 DUF2325: Uncharacteri 64.5 41 0.00089 26.3 7.4 27 170-196 42-70 (97)
387 PRK05282 (alpha)-aspartyl dipe 64.5 15 0.00032 34.1 5.4 83 132-215 31-125 (233)
388 COG5310 Homospermidine synthas 64.2 6.5 0.00014 38.8 3.1 84 134-223 15-107 (481)
389 PRK07877 hypothetical protein; 64.0 16 0.00035 39.3 6.4 27 170-196 190-216 (722)
390 COG0078 ArgF Ornithine carbamo 63.8 19 0.00041 34.9 6.2 54 130-184 151-229 (310)
391 PLN02775 Probable dihydrodipic 63.4 67 0.0015 30.9 9.8 88 132-223 11-124 (286)
392 PRK14573 bifunctional D-alanyl 63.2 14 0.0003 39.9 5.8 53 132-184 4-71 (809)
393 PRK02006 murD UDP-N-acetylmura 63.0 16 0.00034 37.0 5.9 56 131-187 6-82 (498)
394 TIGR02690 resist_ArsH arsenica 62.2 61 0.0013 29.8 9.0 30 171-200 85-116 (219)
395 PRK05562 precorrin-2 dehydroge 62.2 18 0.00038 33.5 5.5 67 131-197 24-106 (223)
396 PRK10669 putative cation:proto 62.0 40 0.00087 34.7 8.7 75 133-209 418-514 (558)
397 PRK04308 murD UDP-N-acetylmura 61.1 1.6E+02 0.0036 29.1 12.6 20 131-151 4-23 (445)
398 TIGR03855 NAD_NadX aspartate d 60.7 18 0.0004 33.3 5.4 39 160-198 20-59 (229)
399 PRK08328 hypothetical protein; 60.4 32 0.0007 31.4 6.9 17 130-146 25-41 (231)
400 PRK03806 murD UDP-N-acetylmura 59.7 1.4E+02 0.0031 29.4 11.9 17 132-148 6-22 (438)
401 PRK03803 murD UDP-N-acetylmura 59.1 1.5E+02 0.0032 29.4 11.9 51 133-184 7-76 (448)
402 PRK03369 murD UDP-N-acetylmura 58.8 24 0.00051 35.9 6.3 52 132-184 12-78 (488)
403 CHL00194 ycf39 Ycf39; Provisio 58.1 22 0.00047 33.4 5.6 52 133-185 1-73 (317)
404 COG0773 MurC UDP-N-acetylmuram 58.0 45 0.00098 34.1 8.0 51 134-184 9-74 (459)
405 PLN02700 homoserine dehydrogen 55.7 13 0.00027 37.1 3.6 30 133-163 4-33 (377)
406 KOG4777|consensus 55.6 16 0.00034 35.1 4.0 36 171-209 72-107 (361)
407 PRK14852 hypothetical protein; 55.6 31 0.00067 38.5 6.8 17 130-146 330-346 (989)
408 COG1063 Tdh Threonine dehydrog 55.4 34 0.00074 33.1 6.5 63 134-197 171-260 (350)
409 cd01491 Ube1_repeat1 Ubiquitin 55.1 45 0.00098 31.9 7.1 17 130-146 17-33 (286)
410 PRK08762 molybdopterin biosynt 55.0 45 0.00098 32.6 7.4 26 171-196 220-245 (376)
411 TIGR03693 ocin_ThiF_like putat 54.8 32 0.0007 36.5 6.5 58 132-190 129-218 (637)
412 PRK05447 1-deoxy-D-xylulose 5- 54.5 80 0.0017 31.6 9.0 15 132-146 1-16 (385)
413 PRK14982 acyl-ACP reductase; P 54.4 20 0.00044 35.1 4.8 77 130-212 153-248 (340)
414 cd01489 Uba2_SUMO Ubiquitin ac 54.3 50 0.0011 32.0 7.4 26 171-196 85-110 (312)
415 PRK10637 cysG siroheme synthas 53.9 38 0.00082 34.2 6.8 64 130-193 10-89 (457)
416 TIGR01081 mpl UDP-N-acetylmura 53.6 26 0.00057 34.8 5.6 54 134-187 1-73 (448)
417 PRK08223 hypothetical protein; 53.3 61 0.0013 31.1 7.7 17 130-146 25-41 (287)
418 PRK04284 ornithine carbamoyltr 53.2 38 0.00083 33.0 6.5 54 129-183 152-231 (332)
419 COG0057 GapA Glyceraldehyde-3- 53.0 17 0.00036 35.7 3.9 19 132-151 1-19 (335)
420 PLN00125 Succinyl-CoA ligase [ 52.9 12 0.00026 36.0 2.9 81 132-215 12-106 (300)
421 PLN02477 glutamate dehydrogena 52.6 28 0.0006 35.1 5.5 55 175-236 280-335 (410)
422 COG1648 CysG Siroheme synthase 52.3 27 0.00058 31.8 4.9 66 129-195 9-91 (210)
423 COG4569 MhpF Acetaldehyde dehy 51.8 32 0.00069 32.0 5.3 21 132-152 4-24 (310)
424 PRK08306 dipicolinate synthase 51.8 1.2E+02 0.0025 28.8 9.4 26 161-186 40-65 (296)
425 PRK00994 F420-dependent methyl 51.7 54 0.0012 31.0 6.8 81 132-216 2-102 (277)
426 cd01484 E1-2_like Ubiquitin ac 51.5 80 0.0017 29.2 8.0 26 171-196 86-111 (234)
427 PRK09271 flavodoxin; Provision 51.4 55 0.0012 27.9 6.5 26 174-199 49-81 (160)
428 PRK06019 phosphoribosylaminoim 51.2 14 0.00029 36.1 3.0 20 132-152 2-21 (372)
429 PF04321 RmlD_sub_bind: RmlD s 50.5 20 0.00044 33.5 4.0 18 133-151 1-19 (286)
430 PRK13170 hisH imidazole glycer 49.4 36 0.00079 30.2 5.3 40 133-182 1-44 (196)
431 cd01488 Uba3_RUB Ubiquitin act 48.4 60 0.0013 31.1 6.8 26 170-195 82-107 (291)
432 PRK15116 sulfur acceptor prote 48.3 53 0.0011 31.1 6.4 16 130-145 28-43 (268)
433 cd05565 PTS_IIB_lactose PTS_II 48.2 62 0.0013 26.0 5.9 58 134-195 2-66 (99)
434 PRK02472 murD UDP-N-acetylmura 48.2 43 0.00092 33.1 6.0 52 132-184 5-76 (447)
435 PRK13143 hisH imidazole glycer 47.1 49 0.0011 29.4 5.7 73 133-215 1-83 (200)
436 PRK02255 putrescine carbamoylt 47.1 58 0.0013 31.9 6.6 53 130-183 152-229 (338)
437 PRK07364 2-octaprenyl-6-methox 46.8 27 0.00059 33.7 4.3 30 119-152 8-37 (415)
438 PRK03515 ornithine carbamoyltr 46.7 56 0.0012 31.9 6.5 54 130-184 154-233 (336)
439 COG0027 PurT Formate-dependent 46.3 1.2E+02 0.0026 30.0 8.4 123 132-275 12-156 (394)
440 KOG1494|consensus 45.6 14 0.00031 35.7 2.1 52 132-184 28-104 (345)
441 COG0771 MurD UDP-N-acetylmuram 45.2 56 0.0012 33.3 6.4 21 130-151 5-25 (448)
442 PRK13142 hisH imidazole glycer 45.1 40 0.00087 30.3 4.8 69 135-215 2-82 (192)
443 PRK08955 glyceraldehyde-3-phos 44.8 17 0.00038 35.5 2.6 19 132-151 2-20 (334)
444 PF00044 Gp_dh_N: Glyceraldehy 44.8 18 0.00038 31.3 2.4 18 133-151 1-18 (151)
445 PRK00536 speE spermidine synth 44.6 1.9E+02 0.0042 27.3 9.5 113 175-302 138-262 (262)
446 PRK09414 glutamate dehydrogena 43.1 2.3E+02 0.005 28.9 10.4 57 176-236 311-368 (445)
447 TIGR00670 asp_carb_tr aspartat 43.1 74 0.0016 30.6 6.6 52 130-182 148-222 (301)
448 cd05313 NAD_bind_2_Glu_DH NAD( 42.9 69 0.0015 30.2 6.2 64 169-236 113-178 (254)
449 PRK02102 ornithine carbamoyltr 42.4 74 0.0016 31.1 6.6 23 161-183 207-231 (331)
450 PLN02832 glutamine amidotransf 42.3 42 0.00091 31.5 4.7 74 132-215 1-84 (248)
451 PRK13181 hisH imidazole glycer 42.2 83 0.0018 27.7 6.4 70 135-214 2-83 (199)
452 PRK04690 murD UDP-N-acetylmura 41.4 59 0.0013 32.8 5.9 53 131-184 7-77 (468)
453 PF03358 FMN_red: NADPH-depend 40.9 58 0.0013 26.9 4.9 19 251-269 119-137 (152)
454 PRK14325 (dimethylallyl)adenos 40.2 80 0.0017 31.6 6.7 55 131-193 2-60 (444)
455 PLN02948 phosphoribosylaminoim 40.2 42 0.00092 35.1 4.8 22 130-152 20-41 (577)
456 cd00762 NAD_bind_malic_enz NAD 39.9 3.1E+02 0.0066 25.9 10.0 47 168-215 96-146 (254)
457 cd05017 SIS_PGI_PMI_1 The memb 39.8 1.7E+02 0.0036 23.4 7.4 39 174-212 41-79 (119)
458 PRK13535 erythrose 4-phosphate 39.6 23 0.0005 34.6 2.6 20 176-195 91-110 (336)
459 PF08484 Methyltransf_14: C-me 39.5 62 0.0013 28.1 5.0 73 132-207 68-157 (160)
460 PLN02358 glyceraldehyde-3-phos 39.4 22 0.00047 34.9 2.4 19 132-151 5-23 (338)
461 PLN02696 1-deoxy-D-xylulose-5- 38.9 1.5E+02 0.0033 30.4 8.3 19 130-148 55-74 (454)
462 COG1927 Mtd Coenzyme F420-depe 37.9 1.7E+02 0.0038 27.3 7.7 82 132-220 2-107 (277)
463 PRK01713 ornithine carbamoyltr 37.6 96 0.0021 30.2 6.5 23 161-183 208-232 (334)
464 PRK06756 flavodoxin; Provision 37.5 2.4E+02 0.0051 23.3 8.5 61 132-197 1-77 (148)
465 PLN00135 malate dehydrogenase 37.4 71 0.0015 30.8 5.5 54 163-216 45-114 (309)
466 PF03949 Malic_M: Malic enzyme 37.1 93 0.002 29.4 6.1 55 168-223 96-159 (255)
467 cd01748 GATase1_IGP_Synthase T 37.1 86 0.0019 27.5 5.7 70 135-214 1-82 (198)
468 cd05211 NAD_bind_Glu_Leu_Phe_V 36.7 37 0.00081 30.9 3.3 100 130-237 21-152 (217)
469 TIGR00658 orni_carb_tr ornithi 36.6 1E+02 0.0022 29.6 6.4 54 129-183 145-223 (304)
470 PRK06988 putative formyltransf 36.4 1.9E+02 0.0041 27.8 8.2 19 131-149 1-19 (312)
471 KOG0022|consensus 36.2 1.1E+02 0.0023 30.4 6.4 64 133-197 194-284 (375)
472 PRK12562 ornithine carbamoyltr 36.2 99 0.0021 30.2 6.4 24 161-184 208-233 (334)
473 PRK13152 hisH imidazole glycer 36.1 1.3E+02 0.0029 26.5 6.7 70 135-215 2-85 (201)
474 TIGR01202 bchC 2-desacetyl-2-h 35.9 72 0.0016 29.8 5.2 13 133-145 146-158 (308)
475 COG1440 CelA Phosphotransferas 35.6 1E+02 0.0023 25.2 5.3 55 132-189 1-61 (102)
476 PRK09288 purT phosphoribosylgl 35.5 40 0.00087 32.6 3.6 25 122-151 6-30 (395)
477 PTZ00383 malate:quinone oxidor 35.3 45 0.00098 34.2 4.0 21 132-153 45-65 (497)
478 PRK12809 putative oxidoreducta 35.3 88 0.0019 32.9 6.2 14 132-145 310-323 (639)
479 COG2242 CobL Precorrin-6B meth 35.0 1.9E+02 0.0042 26.1 7.5 41 176-219 102-142 (187)
480 PLN02342 ornithine carbamoyltr 34.9 1.1E+02 0.0023 30.2 6.4 55 129-184 191-267 (348)
481 KOG1370|consensus 34.9 1E+02 0.0023 30.4 6.1 70 134-207 215-298 (434)
482 PLN02353 probable UDP-glucose 34.8 62 0.0013 33.1 4.9 56 165-220 401-457 (473)
483 PRK07403 glyceraldehyde-3-phos 34.8 29 0.00063 34.1 2.4 19 132-151 1-19 (337)
484 PRK14804 ornithine carbamoyltr 34.6 1.1E+02 0.0025 29.4 6.4 53 130-183 151-225 (311)
485 PRK15473 cbiF cobalt-precorrin 34.6 2.4E+02 0.0052 26.0 8.4 13 130-142 5-17 (257)
486 TIGR03366 HpnZ_proposed putati 33.9 1E+02 0.0023 28.1 5.9 14 132-145 121-134 (280)
487 PRK12769 putative oxidoreducta 33.8 1E+02 0.0022 32.4 6.5 14 132-145 327-340 (654)
488 PLN02527 aspartate carbamoyltr 33.7 1.3E+02 0.0028 28.9 6.6 52 130-182 149-224 (306)
489 PF03602 Cons_hypoth95: Conser 33.7 55 0.0012 28.9 3.9 32 175-207 113-150 (183)
490 PLN03096 glyceraldehyde-3-phos 33.6 35 0.00075 34.3 2.8 19 132-151 60-78 (395)
491 PF13689 DUF4154: Domain of un 33.2 73 0.0016 26.7 4.4 73 132-212 27-102 (145)
492 PF00919 UPF0004: Uncharacteri 33.1 98 0.0021 24.6 4.9 63 157-223 21-91 (98)
493 PRK08192 aspartate carbamoyltr 33.0 1.2E+02 0.0025 29.8 6.3 54 129-183 156-233 (338)
494 COG0379 NadA Quinolinate synth 32.4 1.4E+02 0.0031 29.2 6.6 95 176-283 69-175 (324)
495 COG1062 AdhC Zn-dependent alco 32.3 1.6E+02 0.0034 29.4 6.9 64 133-196 187-275 (366)
496 PRK08385 nicotinate-nucleotide 32.3 1.9E+02 0.0041 27.6 7.4 56 176-231 202-258 (278)
497 PRK07200 aspartate/ornithine c 32.2 1.2E+02 0.0026 30.4 6.3 25 160-184 244-270 (395)
498 TIGR03649 ergot_EASG ergot alk 32.2 68 0.0015 29.2 4.4 17 134-151 1-18 (285)
499 PLN02272 glyceraldehyde-3-phos 32.1 44 0.00095 33.8 3.2 19 132-151 85-103 (421)
500 PRK00711 D-amino acid dehydrog 31.2 42 0.00091 32.4 2.9 18 133-151 1-18 (416)
No 1
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-35 Score=271.89 Aligned_cols=168 Identities=35% Similarity=0.524 Sum_probs=150.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-------------hcHHH----HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-------------IVSKA----TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-------------r~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+|||||||.|+||.+++...++ +..++ ..++|+..+.++.++++++|+|||||||+++++||.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~ 80 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLS 80 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHH
Confidence 5899999999999954332221 22222 336788766777899999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
++++ +.++++|||+++|++++.|+.+++ +.+++|+|||+|+.++.|++.++++.++++++.+.+.+||+.+|.+++|+
T Consensus 81 ~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 81 KLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred Hhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 9998 778999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|++||++||++||||||+|+|+|+|+.
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~ 185 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALAD 185 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999974
No 2
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=269.78 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=150.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh--------------hcHH---HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN--------------IVSK---ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~--------------r~~e---~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
.|||+|||+|+||.+ ++..+. +..+ .+. ++|+.++.++.+++++||+|||||||+++.+|+
T Consensus 2 ~~~IgfIG~G~MG~a-ia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIA-MIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHH-HHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 468999999999994 554321 1122 233 378877788888999999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.++++++++|||+++|++++.|++.++...+++|+|||+|+.+++|++.+++++..++++++.+++||+.+|.++++
T Consensus 81 ~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 99998888888999999999999999999755689999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|+++|+++|++||||||+|+|+|+|+.
T Consensus 161 ~E~~~d~~talsgsgPAf~~~~~eal~~ 188 (272)
T PRK12491 161 NEKLMDVVTSISGSSPAYVYMFIEAMAD 188 (272)
T ss_pred cHHHhhhHHHhccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 3
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.97 E-value=4e-31 Score=247.00 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=146.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------c-HHHH---h-hC-CCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------V-SKAT---G-TM-GAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~-~e~l---~-e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||||+|||+|+||. .++..+.+ . .+++ . .. ++.+..++.++++++|+|||||||+.+.+
T Consensus 1 m~~I~iIG~G~mG~-ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMAD-MIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHH-HHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence 57899999999999 45544211 1 1111 1 23 34556778888899999999999999999
Q ss_pred HHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcE
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v 271 (303)
++.++.+++.++++|||+++|++++.|++.++. .+++|+|||+|+.++.|++.++++++.++++++.++.||+.+|.++
T Consensus 80 vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 158 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVM 158 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEE
Confidence 999999888788899999999999999999974 6899999999999999999999988999999999999999999999
Q ss_pred EcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 272 EVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 272 ~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+++|+++|+++|++||||||+|+|+|+|+.
T Consensus 159 ~v~E~~~d~~tal~gsgPA~~~~~~~al~~ 188 (277)
T PRK06928 159 TIREENMDIASNLTSSSPGFIAAIFEEFAE 188 (277)
T ss_pred EEchhhCceeeeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
No 4
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.97 E-value=6.3e-31 Score=243.45 Aligned_cols=169 Identities=31% Similarity=0.511 Sum_probs=145.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcH----HH-------HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVS----KA-------TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~----e~-------l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
+.|||+|||+|+||+ +++..+.+.. +. ....++....++.++++++|+|||||||+++.+++.++.++
T Consensus 2 ~~mkI~iIG~G~mG~-ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~ 80 (260)
T PTZ00431 2 ENIRVGFIGLGKMGS-ALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPY 80 (260)
T ss_pred CCCEEEEECccHHHH-HHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhh
Confidence 358999999999999 5665543211 10 11234555677888889999999999999999999999987
Q ss_pred cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCCch
Q psy6714 200 FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLD 279 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~D 279 (303)
+. +++|||+++|++.+.++..++....++|+|||+|..++.|.+++++.++.++++.+.++++|+.+|.+++++|+++|
T Consensus 81 l~-~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d 159 (260)
T PTZ00431 81 LG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD 159 (260)
T ss_pred cc-CCEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc
Confidence 75 46889999999999999998755678999999999999999999998888999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHhhhh
Q psy6714 280 GITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 280 a~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++++++||||||+|+|+++|+.
T Consensus 160 ~~ta~~gsgPA~~~~~~~al~~ 181 (260)
T PTZ00431 160 IATAISGCGPAYVFLFIESLID 181 (260)
T ss_pred hhhhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 5
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=1.7e-28 Score=228.87 Aligned_cols=168 Identities=31% Similarity=0.438 Sum_probs=148.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h-------------hcH-HH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N-------------IVS-KA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~-------------r~~-e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.|||+|||+|+||.+ ++..+ + +.. ++ +. ++|+.+..++.+++++||+|||||||+++.++
T Consensus 3 ~mkI~~IG~G~mG~a-ia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEA-IIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHH-HHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 579999999999995 44432 1 111 12 22 35888888888899999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
+.++.+.++++++|||+++|++.+.++++++.+.+|+|.|||++..++++.+++++++..++++++.+++||+.+|.+++
T Consensus 82 l~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 161 (279)
T PRK07679 82 LIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSV 161 (279)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 99998888788999999999999999998876678999999999999999999999888889999999999999999999
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
++|+++|++++++||||||++.++++|.
T Consensus 162 v~e~~~~~~~a~~Gsgpa~~~~~~eal~ 189 (279)
T PRK07679 162 VEEEDMHAVTALSGSGPAYIYYVVEAME 189 (279)
T ss_pred eCHHHhhhHHHhhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 6
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=6.5e-28 Score=219.13 Aligned_cols=168 Identities=23% Similarity=0.389 Sum_probs=146.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH--------------hh-cHHHH---h-hCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL--------------NI-VSKAT---G-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--------------~r-~~e~l---~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.|||+|||+|.||.. ++..+ ++ ..+++ . ++|+..+.++.++++++|+||+||||+.+.++
T Consensus 4 ~~kI~iIG~G~mg~a-la~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEA-IFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHH-HHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHH
Confidence 478999999999994 54331 11 11222 2 35777778888889999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
++++.++++ +++|||+++|++++.|++.++.+..++++|||++.+++.|.+.+++..+.++++.+.+++||+.+|.+++
T Consensus 83 ~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~ 161 (245)
T PRK07634 83 LAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL 161 (245)
T ss_pred HHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 999988774 6799999999999999999986668999999999999999999988888899999999999999999999
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++|+++|.++|++||+|||+|+|+++++.
T Consensus 162 ~~e~~~~~~~a~~gs~pa~~~~~~~a~~~ 190 (245)
T PRK07634 162 CTEEEVHQLTAVTGSAPAFLYYFAESLIE 190 (245)
T ss_pred ECHHHcchHHhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999863
No 7
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.96 E-value=1e-27 Score=220.93 Aligned_cols=167 Identities=36% Similarity=0.553 Sum_probs=146.7
Q ss_pred CcEEEEcCChhhHHHHHHHH---------------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL---------------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|||+|||+|+||.+ ++..+ ++..+ .+.+.|+.+..++.+++++||+||+||||+++.+++.
T Consensus 1 ~kI~~IG~G~mG~a-~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEA-IARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHH-HHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHH
Confidence 78999999999995 44331 22222 2446789888888899999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
++.+.+.++++|||+++|++.+.+++.++. .+++++|||+|..++.+.+.++++...++++++.+++||+.+|.+++++
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~-~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~ 158 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLADLQEWAGG-RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVD 158 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHHHHHHcCC-CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 998878888999999999999999998874 3799999999999999999999888889999999999999999977889
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|++||.+++++||||||+|.+++++..
T Consensus 159 e~~~d~~~~~~g~g~a~~~~~~~a~~e 185 (266)
T PLN02688 159 EKLLDAVTGLSGSGPAYIFLAIEALAD 185 (266)
T ss_pred HHHcchhHhhhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999863
No 8
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.2e-27 Score=220.56 Aligned_cols=168 Identities=31% Similarity=0.481 Sum_probs=145.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-------------hcHH---HHhh-CCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-------------IVSK---ATGT-MGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-------------r~~e---~l~e-~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+||||+|||+|.||. .++..+. +..+ .+.+ +|+.+..++.++++++|+|||||||+++.+++
T Consensus 1 ~mm~I~iIG~G~mG~-~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMAS-AIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHH-HHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 478999999999999 5655421 1122 2333 47877788888889999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.+++ +++|||+++|++.+.++..++.+.+++++|||+|..++.+.++++++...+++.++.++.||+.+|.++++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 57899999999999999998755789999999999999999999988888999999999999999998888
Q ss_pred C-CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 P-EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 d-E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+ |++||++++++||+|||+++|++++..
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~ 186 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALAD 186 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHH
Confidence 6 999999999999999999999998863
No 9
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.95 E-value=1.1e-27 Score=220.22 Aligned_cols=142 Identities=37% Similarity=0.593 Sum_probs=133.0
Q ss_pred hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh
Q psy6714 160 GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV 239 (303)
Q Consensus 160 ~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v 239 (303)
.++|+.+..++.++++++|+|||||||+++.+++.++.+.+.++++|||+++|++++.|+++++.+.+++|+|||++..+
T Consensus 27 ~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~ 106 (245)
T TIGR00112 27 KELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKV 106 (245)
T ss_pred HHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHH
Confidence 35688888889999999999999999999999999998877778899999999999999999976568999999999999
Q ss_pred hCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 240 RQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 240 ~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++|+++++++.+.++++.+.+++||+.+|.+++++|+++|.+++++||||||+|+|+++|..
T Consensus 107 ~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~~~~al~~ 168 (245)
T TIGR00112 107 GAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALAD 168 (245)
T ss_pred hCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 10
>KOG3124|consensus
Probab=99.94 E-value=9.6e-27 Score=213.92 Aligned_cols=168 Identities=37% Similarity=0.617 Sum_probs=151.1
Q ss_pred CcEEEEcCChhhHHHHHHHH-----------------hhcHHH-HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL-----------------NIVSKA-TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-----------------~r~~e~-l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|++||||.|+|.. +++..+ .+.... +...|++.+.++.++++.+|++|+||||+.+.+++.
T Consensus 1 ~~~gfigag~ma~-ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQ-ALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHH-HHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 7899999999998 455431 111122 667899888888999999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
+++..+..++||||+++|++++.++..++...+++|.|||+|+.++.|.++++.+.+...++.+.+++||+.+|.+.+++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99876778899999999999999999998667899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|+.+|++|+++||||||.|.++|+|..
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLad 186 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALAD 186 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999864
No 11
>PRK07680 late competence protein ComER; Validated
Probab=99.94 E-value=2.7e-26 Score=213.21 Aligned_cols=166 Identities=22% Similarity=0.353 Sum_probs=143.8
Q ss_pred CcEEEEcCChhhHHHHHHHHh--------------hcHHH---Hhh-C-CCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN--------------IVSKA---TGT-M-GAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~--------------r~~e~---l~e-~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
|+|+|||+|+||. .++..+. +..++ +.+ . |+.+..++.++++++|+|||||||+++.+++
T Consensus 1 m~I~iIG~G~mG~-ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGT-ILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHH-HHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 6899999999999 4554421 12222 222 3 6777788888899999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.++++++++|||+++|++.+.|++.++ ..++++|||++..++.|.+.++.+...++++.+.++++|+.+|.++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i 157 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVI 157 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999999987 479999999998888999888888777888999999999999999999
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|+.+|.+++++||+|||++.|+++|+.
T Consensus 158 ~e~~~~~~~~l~gs~pa~~~~~~~al~~ 185 (273)
T PRK07680 158 EEDITRVSSDIVSCGPAFFSYLLQRFID 185 (273)
T ss_pred ChHhcchhhhhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999863
No 12
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.94 E-value=4.9e-26 Score=217.07 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=142.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------c---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------V---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~e 195 (303)
..+||+|||+|+||. .++..+.. . .+.+.+.|+.+ .++.+++++||+|||||||+ +...++++
T Consensus 2 ~~kkIgiIG~G~mG~-AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGH-AQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHH-HHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHH
Confidence 357899999999999 45544311 1 12334668875 46788899999999999999 77777778
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-h------hCCcEEEE-eCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-V------RQGASVFV-RGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-v------~~G~til~-~g~~~~~e~~e~V~~Lfs~i 267 (303)
+.+.++++. +||+++|+++..++..++.+.+|+|+|||+|.. + +.|++.++ ...+.+.++.+.+..+|+.+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~i 158 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAI 158 (314)
T ss_pred HHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHc
Confidence 988887675 899999999999999998777999999999998 5 89998886 77788999999999999999
Q ss_pred CCc-------E---EcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 268 GTC-------E---EVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 268 G~~-------v---~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|.. . +++|++||..++++||+|||+|.++|+|+.
T Consensus 159 G~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~ 202 (314)
T TIGR00465 159 GGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVE 202 (314)
T ss_pred CCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHH
Confidence 988 5 778999999999999999999999999963
No 13
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.90 E-value=4.4e-23 Score=190.09 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=130.8
Q ss_pred CcEEEEcCChhhHHHHHHHH-------------hhcHHH---Hhh-C-CCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL-------------NIVSKA---TGT-M-GAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-------------~r~~e~---l~e-~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|||||||+|+||. .++..+ ++..++ +.+ . |+.++.++.++++++|+|||||||+++.+++.
T Consensus 1 m~IgiIG~G~mG~-aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITE-AMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHH-HHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHH
Confidence 6899999999999 455432 122232 222 3 46777888888999999999999999999998
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc-
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV- 273 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v- 273 (303)
++. +.++++|||+++|++.+.|++.++....++++|||++...+.|++.++++ .+.+++||+.+|.++++
T Consensus 80 ~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~~ 150 (258)
T PRK06476 80 ALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVECD 150 (258)
T ss_pred Hhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEEC
Confidence 873 45788999999999999999999765689999999999999999887754 25899999999998877
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
+|+++|.+++++ |+|||+|.+++++.
T Consensus 151 ~e~~~d~~~a~~-s~~a~~~~~~~~~~ 176 (258)
T PRK06476 151 SEEEYDLLAAAS-ALMATYFGILETAT 176 (258)
T ss_pred ChHhccceeehh-ccHHHHHHHHHHHH
Confidence 599999999996 69999999999875
No 14
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.77 E-value=2.7e-18 Score=160.42 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=123.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
|||+|||+|+||+ +++..+.. .. +.+.+.|+. ...+..+++++||+||+|||++.+.++++++.+
T Consensus 1 m~I~IIG~G~mG~-sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~ 79 (279)
T PRK07417 1 MKIGIVGLGLIGG-SLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIP 79 (279)
T ss_pred CeEEEEeecHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHH
Confidence 6899999999999 67765422 22 234455642 233344578899999999999999999999988
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----------hhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----------VRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----------v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+++++. +|+++++++...++........+++.||....+ +.....++++....+++.++.++.+|+.+
T Consensus 80 ~l~~~~-ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~l 158 (279)
T PRK07417 80 ALPPEA-IVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSL 158 (279)
T ss_pred hCCCCc-EEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHc
Confidence 886665 567889999887776543223588888854321 22334577887778899999999999999
Q ss_pred CCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 268 GTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 268 G~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
|.. +++++++||.++++++++|+|+...+
T Consensus 159 G~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 159 GSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred CCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 975 57899999999999999999988654
No 15
>PLN02256 arogenate dehydrogenase
Probab=99.77 E-value=5.8e-18 Score=160.95 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=130.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEecChHHhh-cCCCEEEEeeCCccHHHHHHhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITFDNKEVT-LNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~d~~eav-~~ADIVILAVpP~~v~~VL~eI 196 (303)
+.+|+|+|||+|.||+ +++..+... .+...+.|+....+..+++ .++|+||||||++.+.++++++
T Consensus 34 ~~~~kI~IIG~G~mG~-slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQ-FLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence 3468999999999999 677654321 1223456887667777766 4799999999999999999998
Q ss_pred -ccccCCCCEEEEecC--CCcHHHHHhhCCCCCceEEEecCcHHhhhC----CcEEEEeC-----CCCCHHHHHHHHHHH
Q psy6714 197 -KPVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMPNTPALVRQ----GASVFVRG-----SSASDQDAQTVINLF 264 (303)
Q Consensus 197 -~~~L~~g~IVVSiaa--GV~ie~L~~~l~~~~~VVr~mPn~p~~v~~----G~til~~g-----~~~~~e~~e~V~~Lf 264 (303)
.++++++++|+++.+ |...+.+++.++.+..+|++||+.+.+.+. +..++... +..+++..+.++++|
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~ 192 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIF 192 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHH
Confidence 567888888887766 455677888887656899999999877652 22332221 345778899999999
Q ss_pred HhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 265 KSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 265 s~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+.+|. +++++.++||.++|.+++.|-.+...+-.+
T Consensus 193 ~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~ 228 (304)
T PLN02256 193 EEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKM 228 (304)
T ss_pred HHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHc
Confidence 99997 577899999999999999999888777544
No 16
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.76 E-value=8.9e-18 Score=162.50 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=120.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc------------HHH-Hhh--CCCe--EecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV------------SKA-TGT--MGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~------------~e~-l~e--~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
++|+|||+|+||+ +++..+.+. ... ... .|+. ...+..+++++||+||||||++.+.+++++
T Consensus 1 ~~I~iIG~GliG~-siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGG-SLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHH-HHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence 4699999999999 677664321 111 112 3332 235667788999999999999999999999
Q ss_pred hcc-ccCCCCEEEEecCCCcHHHH---HhhCCCCCceEEEecCcHH-----------hhhCCcEEEEeCCCCCHHHHHHH
Q psy6714 196 IKP-VFNESNLLISVAGGVPIKNM---EQALPKNSRIIRAMPNTPA-----------LVRQGASVFVRGSSASDQDAQTV 260 (303)
Q Consensus 196 I~~-~L~~g~IVVSiaaGV~ie~L---~~~l~~~~~VVr~mPn~p~-----------~v~~G~til~~g~~~~~e~~e~V 260 (303)
+.+ .++++ .||+++++++...+ ++.++....++..||+... .+....+++++....+++.++.+
T Consensus 80 l~~~~l~~~-~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v 158 (359)
T PRK06545 80 LADLELKPG-VIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAEL 158 (359)
T ss_pred HhhcCCCCC-cEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHH
Confidence 987 36666 56778999987644 4444433467777664322 12344578888877889999999
Q ss_pred HHHHHhcCCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 261 INLFKSVGTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 261 ~~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
+++|+.+|.. +++++++||.++|++||+|+|++..+
T Consensus 159 ~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 159 KDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred HHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 9999999986 46899999999999999999998755
No 17
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.76 E-value=5e-18 Score=177.27 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=129.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---HHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---ATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
..||+|||+|+||. +++..+.. ..+ .+.+.|+. ...+..++++++|+||+|||++.+.++++
T Consensus 3 ~~~I~IIG~G~mG~-ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGG-SFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHH-HHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 36799999999999 56654321 112 23456764 34566778899999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHhhh--------------CCcEEEEeCCCCCHHHH
Q psy6714 195 DIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPALVR--------------QGASVFVRGSSASDQDA 257 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~v~--------------~G~til~~g~~~~~e~~ 257 (303)
++.+++++++ ||+++++++ .+.+++.++. .++++|||||+... .+.+++++....+++..
T Consensus 82 ~l~~~~~~~~-ii~d~~svk~~~~~~l~~~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 82 DLKPLLSEHA-IVTDVGSTKGNVVDAARAVFGE--LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred HHHHhcCCCc-EEEEcCCCchHHHHHHHHhccc--cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 9998886664 677888888 6677777763 36899999997522 23457788777888999
Q ss_pred HHHHHHHHhcCC-cEEcCCCCchhhhhhccchHH-HHHHHHHhhh
Q psy6714 258 QTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPA-YRYEVTSNEV 300 (303)
Q Consensus 258 e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPA-f~~~~ie~~~ 300 (303)
+.++++|+.+|. +++++|++||.++|++||+|+ |.|.|++++.
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~ 203 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA 203 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh
Confidence 999999999997 567799999999999999999 8999998874
No 18
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.75 E-value=1.8e-17 Score=156.51 Aligned_cols=164 Identities=13% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cH---HHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VS---KATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~---e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
.+||+|||+|.||. +++..+.. .. +.+.+.|+ ....+..+++++||+||+|+|+..+.++++
T Consensus 6 ~~~I~IIG~G~mG~-sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~ 84 (307)
T PRK07502 6 FDRVALIGIGLIGS-SLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred CcEEEEEeeCHHHH-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 57899999999999 56655321 11 23345565 244566778899999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh--------------hCCcEEEEeCCCCCHHHHHHH
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV--------------RQGASVFVRGSSASDQDAQTV 260 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v--------------~~G~til~~g~~~~~e~~e~V 260 (303)
++.++++++.+| +++++++...++.........+++++++|+.. .....++++....+++.++.+
T Consensus 85 ~l~~~l~~~~iv-~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~ 163 (307)
T PRK07502 85 EIAPHLKPGAIV-TDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARL 163 (307)
T ss_pred HHHhhCCCCCEE-EeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHH
Confidence 998888777754 56788886655443221112345555555431 112345677666788899999
Q ss_pred HHHHHhcCCc-EEcCCCCchhhhhhccchHHHHHHHHH
Q psy6714 261 INLFKSVGTC-EEVPEYLLDGITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 261 ~~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~~~~ie 297 (303)
.++|+.+|.. +++++++||.++|++|++|+|+++++-
T Consensus 164 ~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~ 201 (307)
T PRK07502 164 TAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIV 201 (307)
T ss_pred HHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHH
Confidence 9999999975 567999999999999999999888763
No 19
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.70 E-value=1.7e-16 Score=147.73 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=116.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh------------hcHH---HHhhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASLN------------IVSK---ATGTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~------------r~~e---~l~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
|||+|||+|+||+ +++..+. +..+ .+.+.|+. ...+..++. +||+||+|||++.+.+++.++
T Consensus 1 m~I~iIG~G~mG~-sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGG-SLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHH-HHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHH
Confidence 6899999999999 5665532 1122 23456763 344666655 599999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCC--CCceEEEecCcHH------h----hhCC-cEEEEeCCCCCHHHHHHHHHH
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPK--NSRIIRAMPNTPA------L----VRQG-ASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~--~~~VVr~mPn~p~------~----v~~G-~til~~g~~~~~e~~e~V~~L 263 (303)
.+ ++++++|++ ++.++....+ .+.. ...+++.||+... . ..+| .+++++.+..+++..+.++.+
T Consensus 79 ~~-l~~~~iv~d-~gs~k~~i~~-~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l 155 (275)
T PRK08507 79 LD-IKENTTIID-LGSTKAKIIE-SVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEI 155 (275)
T ss_pred hc-cCCCCEEEE-CccchHHHHH-HHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHH
Confidence 88 888888775 4555544333 2221 1468999998532 1 1144 456777666788899999999
Q ss_pred HHhcCC-cEEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 264 FKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 264 fs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
|+.+|. ++++++++||.++++++..|-++...+
T Consensus 156 ~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l 189 (275)
T PRK08507 156 FSGLGMRIVYMDAKEHDLHAAYISHLPHIISFAL 189 (275)
T ss_pred HHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHH
Confidence 999995 678899999999999999998766544
No 20
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.69 E-value=6.2e-16 Score=148.66 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=127.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~ 194 (303)
+..++|||||+|+||.+ ++..+.. ..+.+.+.|+.+. +..+++++||+|||+||+....+++ +
T Consensus 15 L~gktIgIIG~GsmG~A-lA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHA-HALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred hCCCEEEEEeeHHHHHH-HHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence 34678999999999994 5544321 1123345688764 8889999999999999999999999 7
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
++.+.++++++| +.++|+++..+...++.+..|+++|||.|.. ++.|++.++ ...+.+.++.+.+..+|+.
T Consensus 93 ~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~a 171 (330)
T PRK05479 93 EIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKG 171 (330)
T ss_pred HHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 899889888876 8999999999988888778999999999988 889999887 6677789999999999999
Q ss_pred cCCc-E-----EcC-CC---CchhhhhhccchHHHHHHHHHhh
Q psy6714 267 VGTC-E-----EVP-EY---LLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 267 iG~~-v-----~vd-E~---~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+|.. . .+. |. .+..-+.++|...+.+-.-++-+
T Consensus 172 iG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l 214 (330)
T PRK05479 172 IGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETL 214 (330)
T ss_pred cCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHH
Confidence 9964 2 333 33 23334455555555544444443
No 21
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.69 E-value=3.4e-16 Score=155.53 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=126.2
Q ss_pred CcEEEEc-CChhhHHHHHHHHhh----------cHHH----HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAG-TTERGPGALIASLNI----------VSKA----TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r----------~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||+||| +|.||+ +++..+.. ..+. ..+.|+....+..+++.++|+||+|||++.+.+++.++.
T Consensus 1 MkI~IIGG~G~mG~-slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGK-WFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHH-HHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHH
Confidence 7899997 999999 57665422 2222 235688777778888999999999999999999999999
Q ss_pred cccCCCCEEEEecC--CCcHHHHHhhCCCCCceEEEecCcHH---hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-E
Q psy6714 198 PVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMPNTPA---LVRQGASVFVRGSSASDQDAQTVINLFKSVGTC-E 271 (303)
Q Consensus 198 ~~L~~g~IVVSiaa--GV~ie~L~~~l~~~~~VVr~mPn~p~---~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v 271 (303)
+.++++++|+++.+ +...+.+++.++.+..++.+||.... .+.....++++++..+++..+.++++|+.+|.. +
T Consensus 80 ~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~ 159 (437)
T PRK08655 80 PHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVI 159 (437)
T ss_pred hhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 98888998886653 33446677777655678888865321 222334567777667888999999999999975 5
Q ss_pred EcCCCCchhhhhhccchHHHHHHHHHh
Q psy6714 272 EVPEYLLDGITGLSGSGPAYRYEVTSN 298 (303)
Q Consensus 272 ~vdE~~~Da~tAlsGsgPAf~~~~ie~ 298 (303)
++++++||.++|+++++|.|++..+-.
T Consensus 160 ~~~~e~HD~~~a~vs~lph~~a~al~~ 186 (437)
T PRK08655 160 VTSPEEHDRIMSVVQGLTHFAYISIAS 186 (437)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998776543
No 22
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.68 E-value=5.9e-16 Score=145.79 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=126.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc------------HH---HHhhCCCeEe--cCh-HHhhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV------------SK---ATGTMGAKIT--FDN-KEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~------------~e---~l~e~Gv~v~--~d~-~eav~~ADIVILAVpP~~v~~V 192 (303)
.+|+|+|+|+|+||+ +|++.++.. .. ...++|+.-. .+. .+.+.++|+||+|||...+.++
T Consensus 2 ~~~~v~IvG~GliG~-s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGG-SLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHH-HHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHH
Confidence 368999999999999 888875432 11 2224566422 233 5667789999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHH---hhCCCCCceEEEecCcHHh-----hhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNME---QALPKNSRIIRAMPNTPAL-----VRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~---~~l~~~~~VVr~mPn~p~~-----v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
++++.++++++++| +++++++...++ +..+....++..||+...+ +.....++|+....+.+.++.+.++|
T Consensus 81 l~~l~~~l~~g~iv-~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~ 159 (279)
T COG0287 81 LKELAPHLKKGAIV-TDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLW 159 (279)
T ss_pred HHHhcccCCCCCEE-EecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999899865 577788875544 4454323566777665431 12335688888777788999999999
Q ss_pred HhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 265 KSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 265 s~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
+.+|. +++++.++||.++|.+++.|-|+++-+-...
T Consensus 160 ~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~ 196 (279)
T COG0287 160 EALGARLVEMDAEEHDRVMAAVSHLPHAAALALANAL 196 (279)
T ss_pred HHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 5778999999999999999999888765544
No 23
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.65 E-value=1.4e-15 Score=148.31 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=115.5
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCC----eEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc---cCCC
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVSKATGTMGA----KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV---FNES 203 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~---L~~g 203 (303)
.++|+|||+ |+||+ +|++.++.... ..=.|+ ....++.+++.+||+||||||+..+.++++++.++ ++++
T Consensus 4 ~~~I~IIGl~GliGg-slA~alk~~~~-~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~ 81 (370)
T PRK08818 4 QPVVGIVGSAGAYGR-WLARFLRTRMQ-LEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAG 81 (370)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHhcCC-CEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCC
Confidence 468999999 99999 89988775311 000011 11345667889999999999999999999999875 6677
Q ss_pred CEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh---CC-cEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCc
Q psy6714 204 NLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR---QG-ASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLL 278 (303)
Q Consensus 204 ~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~---~G-~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~ 278 (303)
+ +|+++++++...++..++....+|..||+...+.. +| ..++|+. ...+..++++++|+.+|. +++++.++|
T Consensus 82 ~-iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeH 158 (370)
T PRK08818 82 Q-LWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHH 158 (370)
T ss_pred e-EEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHH
Confidence 6 56788999987777766544568888887654321 34 3466654 244557899999999996 577899999
Q ss_pred hhhhhhccchHHHHHHH
Q psy6714 279 DGITGLSGSGPAYRYEV 295 (303)
Q Consensus 279 Da~tAlsGsgPAf~~~~ 295 (303)
|.++|+++..|-+....
T Consensus 159 D~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 159 DRVMALVQAMVHATHLA 175 (370)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997555544443
No 24
>PLN02712 arogenate dehydrogenase
Probab=99.63 E-value=7.6e-15 Score=152.71 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=134.4
Q ss_pred hccccccccCCCcCCCCCCCCCCCCcccccCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEec
Q psy6714 101 REGNECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITF 168 (303)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~ 168 (303)
|---.|.+++++-.|-- .++-..-.-+.+|+|||||+|+||+ .|+..+... .+.+.+.|+....
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~kIgIIG~G~mG~-slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~ 99 (667)
T PLN02712 24 RLSLSIKSQSATATDKQ---PLPNSNPDNTTQLKIAIIGFGNYGQ-FLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFL 99 (667)
T ss_pred hhhhhhcccccccCCCC---CCCCCCCccCCCCEEEEEccCHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeC
Confidence 33344766666544433 1121111224468999999999999 677664321 1234467887777
Q ss_pred ChHHhh-cCCCEEEEeeCCccHHHHHHhhc-cccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecCcHHhhh---
Q psy6714 169 DNKEVT-LNSEVIILAVKPHIVPVALNDIK-PVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPNTPALVR--- 240 (303)
Q Consensus 169 d~~eav-~~ADIVILAVpP~~v~~VL~eI~-~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn~p~~v~--- 240 (303)
+..+++ +++|+||||||+..+.+++.++. ++++++++|+++ ++++. +.+...++.+..++.+||+...+..
T Consensus 100 d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv-~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g 178 (667)
T PLN02712 100 DPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDV-LSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHG 178 (667)
T ss_pred CHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEEC-CCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccch
Confidence 777755 57999999999999999999886 567788877765 56775 3566677765678999998754411
Q ss_pred -CCcE-EEEe---C-CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 241 -QGAS-VFVR---G-SSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 241 -~G~t-il~~---g-~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
.+.. +++. + +....+..+++.++|+.+|. .++++.++||.+.|.+++.|-++.+++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~ 245 (667)
T PLN02712 179 WDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLK 245 (667)
T ss_pred hccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 3331 1 22223456788899999996 5778999999999999999998888887654
No 25
>PLN02712 arogenate dehydrogenase
Probab=99.63 E-value=2.9e-15 Score=155.77 Aligned_cols=174 Identities=16% Similarity=0.118 Sum_probs=128.2
Q ss_pred CcccccCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEecChHHhhc-CCCEEEEeeCCccHHH
Q psy6714 125 SREARWNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITFDNKEVTL-NSEVIILAVKPHIVPV 191 (303)
Q Consensus 125 ~~~~~~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~d~~eav~-~ADIVILAVpP~~v~~ 191 (303)
+.+..+..|||||||+|+||+ +++..+... .+.+.+.|+....+..+++. .+|+||||||+..+.+
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~-slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQ-FLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred hccCCCCCCEEEEEecCHHHH-HHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHH
Confidence 334445679999999999999 677654321 12344678876677777765 5999999999999999
Q ss_pred HHHhhcc-ccCCCCEEEEecCC--CcHHHHHhhCCCCCceEEEecCcHHhhh-CC---cE-----EEEeCCCCCHHHHHH
Q psy6714 192 ALNDIKP-VFNESNLLISVAGG--VPIKNMEQALPKNSRIIRAMPNTPALVR-QG---AS-----VFVRGSSASDQDAQT 259 (303)
Q Consensus 192 VL~eI~~-~L~~g~IVVSiaaG--V~ie~L~~~l~~~~~VVr~mPn~p~~v~-~G---~t-----il~~g~~~~~e~~e~ 259 (303)
++.++.. .++++++||++.++ ...+.+.+.++.+..+++.||+.+.+.+ .| .. .++.++....+..+.
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 9998875 57788888877543 4567778888766689999999887654 23 11 122233334456677
Q ss_pred HHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 260 VINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 260 V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+.++|+.+|. .++++.++||.++|.+++.|..+..++..+
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~ 561 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKL 561 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999996 577899999999999999998877776543
No 26
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.53 E-value=3.9e-14 Score=138.13 Aligned_cols=158 Identities=12% Similarity=0.113 Sum_probs=111.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEec
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSia 210 (303)
+++|+||| +|.||+ +|++.+........-.+.....+..+++.+||+||+|||+..+.+++.++.+ ++++++|+++
T Consensus 98 ~~~I~IiGG~GlmG~-slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv- 174 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-LFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDL- 174 (374)
T ss_pred cceEEEEcCCChhhH-HHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEEC-
Confidence 67899998 999999 6876654321111001111113456778899999999999999999999988 8788876644
Q ss_pred CCCcHHHH---HhhCCCCCceEEEecCcHHhhh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhh
Q psy6714 211 GGVPIKNM---EQALPKNSRIIRAMPNTPALVR--QGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGL 284 (303)
Q Consensus 211 aGV~ie~L---~~~l~~~~~VVr~mPn~p~~v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAl 284 (303)
++++...+ .+.++ ..++..||..+.... .+..+ +..+..+++..+.+.++|+.+|. ++++++++||.++|+
T Consensus 175 ~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~v-v~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~ 251 (374)
T PRK11199 175 TSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVV-VVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAF 251 (374)
T ss_pred CCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEE-EEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
Confidence 77765444 44443 257888887654322 22222 22334466788999999999997 567899999999999
Q ss_pred ccchHHHHHHH
Q psy6714 285 SGSGPAYRYEV 295 (303)
Q Consensus 285 sGsgPAf~~~~ 295 (303)
+++.|-++.+.
T Consensus 252 vshLpH~~a~a 262 (374)
T PRK11199 252 IQALRHFATFA 262 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999887555
No 27
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.53 E-value=1.9e-13 Score=123.49 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=99.8
Q ss_pred CcEEEEc-CChhhHHHHHHHHh----------hcHHHHh-----------hCCC--eE-ecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAG-TTERGPGALIASLN----------IVSKATG-----------TMGA--KI-TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~----------r~~e~l~-----------e~Gv--~v-~~d~~eav~~ADIVILAVpP~ 187 (303)
|||+||| +|+||. .|+..+- +..+++. ..|+ .+ ..+..++++++|+||||||++
T Consensus 1 MkI~IIGG~G~mG~-ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGK-GLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD 79 (219)
T ss_pred CEEEEEcCCCHHHH-HHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH
Confidence 7899997 999999 4554421 2222211 1132 12 246677889999999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH-----------------HHHHhhCCCCCceEEEecCcHHhhhCC------cE
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI-----------------KNMEQALPKNSRIIRAMPNTPALVRQG------AS 244 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i-----------------e~L~~~l~~~~~VVr~mPn~p~~v~~G------~t 244 (303)
.+.++++++.+.+. +++|||+++|++. +.+++.++...+||++|||+++.+..+ ..
T Consensus 80 ~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~ 158 (219)
T TIGR01915 80 HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCD 158 (219)
T ss_pred HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCC
Confidence 99999999887664 5899999999987 567888875468999999999765432 34
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhc-CCc
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSV-GTC 270 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~i-G~~ 270 (303)
+++.|+ ++++++.|.+|.+.+ |..
T Consensus 159 ~~v~Gd--d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 159 VLVCGD--DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred EEEECC--CHHHHHHHHHHHHhcCCCC
Confidence 555554 577899999999999 874
No 28
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.53 E-value=1.4e-13 Score=129.96 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=106.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhh-----CC--------------CeEecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGT-----MG--------------AKITFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e-----~G--------------v~v~~d~~eav~~ADI 179 (303)
.+||+|||+|.||.+ ++..+ +...+ .+.+ .| +..+.+..+++++||+
T Consensus 4 ~~~I~vIGaG~mG~~-iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSG-IAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHH-HHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 568999999999995 44331 11111 1111 12 2455677778899999
Q ss_pred EEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 180 IILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 180 VILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
||+|||++. ..+++.++.+.++++++|+|.++|+++..+.+.+....+++++||+.|..... ...+++++..+++.+
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t~~~~~ 161 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKTSPQTV 161 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCCCHHHH
Confidence 999999874 67888888887777888889999999999998886546799999999876655 445667778899999
Q ss_pred HHHHHHHHhcCCc-EEcC
Q psy6714 258 QTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 258 e~V~~Lfs~iG~~-v~vd 274 (303)
+.+.++|+.+|.. +.+.
T Consensus 162 ~~v~~l~~~~G~~~v~~~ 179 (311)
T PRK06130 162 ATTMALLRSIGKRPVLVK 179 (311)
T ss_pred HHHHHHHHHcCCEEEEEc
Confidence 9999999999985 4443
No 29
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.50 E-value=3.6e-13 Score=125.67 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=90.5
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccH--HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIV--PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+..+++.. .+++||+||+|||++.. .+++.++.++++++++|+|.++|+++..|.+.++...+++++||+.|..+..
T Consensus 71 l~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~ 149 (282)
T PRK05808 71 ITGTTDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMK 149 (282)
T ss_pred eEEeCCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCc
Confidence 34455554 57899999999987655 5888999888888999889999999999999886445899999999988887
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
++. ++.+...+++..+.+..+|+.+|+. +.+
T Consensus 150 ~ve-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~ 181 (282)
T PRK05808 150 LVE-IIRGLATSDATHEAVEALAKKIGKTPVEV 181 (282)
T ss_pred cEE-EeCCCCCCHHHHHHHHHHHHHcCCeeEEe
Confidence 775 6777889999999999999999985 444
No 30
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.48 E-value=4.7e-13 Score=134.92 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHH---------hhcHHH---H-------------------hhCC-CeEecChHHhhcCCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL---------NIVSKA---T-------------------GTMG-AKITFDNKEVTLNSE 178 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al---------~r~~e~---l-------------------~e~G-v~v~~d~~eav~~AD 178 (303)
+.|||+|||+|.||.++....+ +...+. + ...| +..+.++.+++++||
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 4578999999999996533321 111111 1 0123 567778888999999
Q ss_pred EEEEeeCCcc-HH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 179 VIILAVKPHI-VP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 179 IVILAVpP~~-v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~ 256 (303)
+||.|||++. ++ .++.++...++++.+|+|.++|++...+.+.+.....++..||+.|..... .+.+++++..+++.
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~t~~e~ 161 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGKTSPET 161 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCCCCHHH
Confidence 9999999775 44 456777777778888889999999999988886545789999988875443 44677888888999
Q ss_pred HHHHHHHHHhcCCcEEcCCCCchhhhh
Q psy6714 257 AQTVINLFKSVGTCEEVPEYLLDGITG 283 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~~Da~tA 283 (303)
++.+..+|+.+|+..++-+++++-+++
T Consensus 162 ~~~~~~~~~~lG~~~v~~~k~~~gfi~ 188 (495)
T PRK07531 162 IRRAKEILREIGMKPVHIAKEIDAFVG 188 (495)
T ss_pred HHHHHHHHHHcCCEEEeecCCCcchhH
Confidence 999999999999876655555554443
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.47 E-value=2.2e-13 Score=117.78 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=91.0
Q ss_pred CCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHHHh--h
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVALND--I 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL~e--I 196 (303)
||||||||+|.||.++.... +++..+ .+.+.|+..+.++.|++++||+||+||++ .++++++.+ +
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 78999999999999643332 233333 45567999999999999999999999985 779999988 8
Q ss_pred ccccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEE-ecCcHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 197 KPVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRA-MPNTPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~-mPn~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.+.++++||.+. .++.+ .+.+.+. .+..++.+ +...+.....|. ++++.| +++.++.++.+|+.+|..
T Consensus 81 ~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 81 LAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp GGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHHHHEEE
T ss_pred hhccccceEEEecC-CcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHHHHhCC
Confidence 88888999998553 44443 4444442 22333322 223333444554 677776 788999999999999975
Q ss_pred EE
Q psy6714 271 EE 272 (303)
Q Consensus 271 v~ 272 (303)
++
T Consensus 157 v~ 158 (163)
T PF03446_consen 157 VY 158 (163)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 32
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.47 E-value=6.9e-13 Score=127.67 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=108.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh---------cHH---HHhh-------C--C------CeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI---------VSK---ATGT-------M--G------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r---------~~e---~l~e-------~--G------v~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||.|.||+ .++..+.+ +.+ .+.+ + + +..+.|..++++++|+||+||
T Consensus 7 ~mkI~IiGaGa~G~-alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGT-TVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHH-HHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 68999999999999 45543211 111 1111 1 1 234567777889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCcEE-EEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGASV-FVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~ti-l~~g~~~~~e~ 256 (303)
|++.++++++++.++++++++|||+++|+.. +.+++.++.....+..+||++.++..|.+. ++.+ ..+++.
T Consensus 86 ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via-~~~~~~ 164 (341)
T PRK12439 86 PSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLA-MPDQHL 164 (341)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEE-eCCHHH
Confidence 9999999999999999888899999999986 577777764334678889999999888642 2332 236778
Q ss_pred HHHHHHHHHhcCCcEEcCCCC
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.+.++|+.-|..++++++.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di 185 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDV 185 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCch
Confidence 899999999999888776654
No 33
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.46 E-value=8.1e-13 Score=124.36 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=102.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC--------------CCeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTM--------------GAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~--------------Gv~v~~d~~eav~~ADIVILAV 184 (303)
||||+|||+|.||.. ++..+ ++..+ .+.+. ++....+..++++++|+||+||
T Consensus 1 mmkI~iiG~G~mG~~-~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTA-LAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 689999999999995 44332 12222 23332 3555667777889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCC-CceEEEecCcHHhhhCCc-EEEEeCCCCCHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKN-SRIIRAMPNTPALVRQGA-SVFVRGSSASDQ 255 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~-~~VVr~mPn~p~~v~~G~-til~~g~~~~~e 255 (303)
|++++.+++.++.+.+.++++||++++|+.. +.+++.++.. ...+...|+.+.....+. ..+..+ ..+.+
T Consensus 80 ~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~-~~~~~ 158 (325)
T PRK00094 80 PSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIA-STDEE 158 (325)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEE-eCCHH
Confidence 9999999999999888889999999988885 3455555531 235667799887766553 222222 23678
Q ss_pred HHHHHHHHHHhcCCcEEcCCC
Q psy6714 256 DAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 256 ~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
..+.+.++|+..|..+.+.++
T Consensus 159 ~~~~~~~~l~~~~~~~~~~~d 179 (325)
T PRK00094 159 LAERVQELFHSPYFRVYTNTD 179 (325)
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 889999999999986666544
No 34
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.44 E-value=1.4e-12 Score=122.39 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=85.7
Q ss_pred ecChHHhhcCCCEEEEeeC--CccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcE
Q psy6714 167 TFDNKEVTLNSEVIILAVK--PHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGAS 244 (303)
Q Consensus 167 ~~d~~eav~~ADIVILAVp--P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~t 244 (303)
..++.+++++||+||+||+ ++....++.++.+.++++++|+|.++++++..+.+.+....+++++|+..|..... .+
T Consensus 74 ~~~~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~-lv 152 (295)
T PLN02545 74 CTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK-LV 152 (295)
T ss_pred eeCCHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc-eE
Confidence 3444567899999999998 77777888888888888889889999999999999876445788998776654433 35
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
.++.+...+++..+.++.+|+.+|+.+.+
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVC 181 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 66777888999999999999999986544
No 35
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.41 E-value=5.8e-13 Score=125.83 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=96.5
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHHH----HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---h
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSKA----TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN---D 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~---e 195 (303)
|||+|||||+||.+|..+. ++++.++ +++.|.....++.|+++.+|+||+||+ +.++++|+. .
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 6899999999999865554 2444444 457799999999999999999999996 788999994 5
Q ss_pred hccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEE--ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 196 IKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRA--MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~--mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+...++++++||.+ +.++. ..+.+.+.. +..++.. .-..+.......++++.+ +++.++.++.+|+.+|.
T Consensus 81 ~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG---~~~~f~r~~pvl~~~g~ 156 (286)
T COG2084 81 LLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGG---DAEAFERAKPVLEAMGK 156 (286)
T ss_pred hhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCC---CHHHHHHHHHHHHHhcC
Confidence 77777899999844 34544 344444321 2222222 011122222335677776 88999999999999998
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+.+-+
T Consensus 157 ~i~~~G~ 163 (286)
T COG2084 157 NIVHVGP 163 (286)
T ss_pred ceEEECC
Confidence 556644
No 36
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.40 E-value=6.5e-13 Score=104.19 Aligned_cols=77 Identities=34% Similarity=0.533 Sum_probs=59.6
Q ss_pred cEEEEcCChhhHHHHHHHH-h-------------hcHHH----HhhCCCeEec-ChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 134 DKQIAGTTERGPGALIASL-N-------------IVSKA----TGTMGAKITF-DNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al-~-------------r~~e~----l~e~Gv~v~~-d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||.|+||.+ |+..+ + +..++ ..+.++.+.. ++.++++++|+|||||||+++.+++.
T Consensus 1 kI~iIG~G~mg~a-l~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSA-LARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHH-HHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHH-HHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 7999999999994 55432 1 12222 2466777666 88999999999999999999999999
Q ss_pred hhccccCCCCEEEEecCC
Q psy6714 195 DIKPVFNESNLLISVAGG 212 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG 212 (303)
++ ..+.++++|||+++|
T Consensus 80 ~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH-HHHHTTSEEEEESTT
T ss_pred HH-hhccCCCEEEEeCCC
Confidence 99 556689999999987
No 37
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.36 E-value=1.2e-11 Score=115.24 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=106.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeE-----------ecChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKI-----------TFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v-----------~~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|||+|.||+ .++..+. +.. +.+.+.|+.+ ..+..++ +++|+||+|||+++
T Consensus 1 m~I~IiG~G~~G~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGG-LFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc
Confidence 7899999999999 5654421 111 2333445532 2334444 89999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEE---------ecCcHHhhhCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRA---------MPNTPALVRQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~---------mPn~p~~v~~G~til~~g~~~~~e~~e 258 (303)
+.++++++.+.+.++++||++.+|+. .+.+.+.++. ..++.. .|++....+.|...+...+ ...+..+
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~-~~~~~~~ 156 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPD-GESAAAE 156 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCC-CCcHHHH
Confidence 99999999998888889999999997 4667777764 234322 2443333344443332222 2234577
Q ss_pred HHHHHHHhcCCcEEcCCC-------------CchhhhhhccchHHHH
Q psy6714 259 TVINLFKSVGTCEEVPEY-------------LLDGITGLSGSGPAYR 292 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~-------------~~Da~tAlsGsgPAf~ 292 (303)
.+.++|+..|..++++++ .++.++|+.+|.++-+
T Consensus 157 ~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l 203 (304)
T PRK06522 157 ALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGEL 203 (304)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHH
Confidence 899999999988777765 4677888988876643
No 38
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.35 E-value=6.1e-12 Score=116.72 Aligned_cols=139 Identities=18% Similarity=0.270 Sum_probs=101.3
Q ss_pred HhhCCCeE-ecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHH---HHHhhCCCCCceEEEecC
Q psy6714 159 TGTMGAKI-TFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK---NMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 159 l~e~Gv~v-~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~~~~VVr~mPn 234 (303)
..+.|+.. ..+..++++++|+||||||+..+.++++++.++++++++ |+++++++.. .+++.++.+..+|..||+
T Consensus 27 a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~i-v~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM 105 (258)
T PF02153_consen 27 ALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAI-VTDVGSVKAPIVEAMERLLPEGVRFVGGHPM 105 (258)
T ss_dssp HHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSE-EEE--S-CHHHHHHHHHHHTSSGEEEEEEES
T ss_pred HHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcE-EEEeCCCCHHHHHHHHHhcCcccceeecCCC
Confidence 44677742 223367899999999999999999999999999988875 5577889874 455666655688999988
Q ss_pred cHHh-----------hhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHh
Q psy6714 235 TPAL-----------VRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSN 298 (303)
Q Consensus 235 ~p~~-----------v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~ 298 (303)
...+ +.+...++|+....+++..+.++++|+.+|. +++++.++||.++|++++.|-++...+-.
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6541 1123467888877788999999999999996 57789999999999999999998877655
No 39
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.35 E-value=8.8e-12 Score=118.75 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=98.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC--------C------CeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTM--------G------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~--------G------v~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||+|.||.+ ++..+ ++..+ .+... | +..+.++.++++++|+||+||
T Consensus 4 ~m~I~iIG~G~mG~~-ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 4 GMRVAVLGAGAWGTA-LAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCeEEEECcCHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 689999999999995 44331 22222 22221 3 345667888889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCc-----HHHHHhhCCC---CCceEEEecCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVP-----IKNMEQALPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~-----ie~L~~~l~~---~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~ 256 (303)
|+++++++++.++ ++.+||++++|+. ...+.+.+.. ....+...|+.+..+..+...++.....+++.
T Consensus 83 ~~~~~~~v~~~l~----~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~ 158 (328)
T PRK14618 83 PSKALRETLAGLP----RALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGL 158 (328)
T ss_pred chHHHHHHHHhcC----cCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHH
Confidence 9999998886654 5678899999876 4455555432 22346778999988877643222112337888
Q ss_pred HHHHHHHHHhcCCcEEcCCCCc
Q psy6714 257 AQTVINLFKSVGTCEEVPEYLL 278 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~~ 278 (303)
.+.++++|+..|..++++++..
T Consensus 159 ~~~v~~ll~~~~~~v~~~~di~ 180 (328)
T PRK14618 159 ARRVQAAFSGPSFRVYTSRDRV 180 (328)
T ss_pred HHHHHHHhCCCcEEEEecCCcc
Confidence 9999999999998887765543
No 40
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.33 E-value=1.2e-11 Score=111.13 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=101.0
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
|||+|||. |.||. .|+. .+.+.|+.+. +.+||+||||||+..+.++++++.+ + |.+++
T Consensus 1 ~~~~iiG~~G~mG~-~~~~-------~~~~~g~~v~------~~~~DlVilavPv~~~~~~i~~~~~------~-v~Dv~ 59 (197)
T PRK06444 1 MMEIIIGKNGRLGR-VLCS-------ILDDNGLGVY------IKKADHAFLSVPIDAALNYIESYDN------N-FVEIS 59 (197)
T ss_pred CEEEEEecCCcHHH-HHHH-------HHHhCCCEEE------ECCCCEEEEeCCHHHHHHHHHHhCC------e-EEecc
Confidence 78999985 99999 5643 4556677764 5789999999999999999988752 4 55888
Q ss_pred CCcHHHHHhhCCCCCceEEEecCcHHhhh-CC---cEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhcc
Q psy6714 212 GVPIKNMEQALPKNSRIIRAMPNTPALVR-QG---ASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSG 286 (303)
Q Consensus 212 GV~ie~L~~~l~~~~~VVr~mPn~p~~v~-~G---~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsG 286 (303)
+++....+ . ...++..||...-... .+ ..+++ .+..+++..+.++++|+ |. .++++.++||.++|+++
T Consensus 60 SvK~~i~~-~---~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~is 132 (197)
T PRK06444 60 SVKWPFKK-Y---SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIM 132 (197)
T ss_pred ccCHHHHH-h---cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHH
Confidence 99886433 2 2368888887642211 22 23333 45667788899999998 65 57789999999999999
Q ss_pred chHHHHHHHH
Q psy6714 287 SGPAYRYEVT 296 (303)
Q Consensus 287 sgPAf~~~~i 296 (303)
..|-++...+
T Consensus 133 hLpH~ia~al 142 (197)
T PRK06444 133 VKPYIISMIL 142 (197)
T ss_pred HHHHHHHHHH
Confidence 9998876554
No 41
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.33 E-value=1.8e-11 Score=118.54 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=107.5
Q ss_pred HhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecC
Q psy6714 159 TGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 159 l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn 234 (303)
+.+.|+.++.++.+++++||+||+|||+.. +++++.++.+.+.++++||+++.+... +.+.+.++.....++++++
T Consensus 64 l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~ 143 (342)
T PRK12557 64 VEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSM 143 (342)
T ss_pred HHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeec
Confidence 456788888888899999999999999888 899999999889888888866544332 3445566432345566666
Q ss_pred cHHhh----hCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchh-------hhhhccchHHHHHHHHH
Q psy6714 235 TPALV----RQGASVFVRG-----SSASDQDAQTVINLFKSVGT-CEEVPEYLLDG-------ITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 235 ~p~~v----~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da-------~tAlsGsgPAf~~~~ie 297 (303)
+|+.+ ..+.++++.+ ...+++.++.++++|+.+|. ++++++...+. +++++.++++++|.+.+
T Consensus 144 ~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 144 HPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred CCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 2345565532 23478889999999999998 56778777777 99999999999999988
Q ss_pred hhh
Q psy6714 298 NEV 300 (303)
Q Consensus 298 ~~~ 300 (303)
.+.
T Consensus 224 ~~~ 226 (342)
T PRK12557 224 KII 226 (342)
T ss_pred HhC
Confidence 764
No 42
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.29 E-value=5.4e-11 Score=111.64 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=87.5
Q ss_pred EecChHHhhcCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 166 ITFDNKEVTLNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...+. +++++||+||+||+++. ..++++++.+.++++++|+|.++|+.+..+.+.+....+++.+|++.|..+..++
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~v 154 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLI 154 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccE
Confidence 33444 57889999999998775 5678888888888899999999999999999988644579999999887776666
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 244 SVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 244 til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
-+ +.+...+++.++.+..+++.+|+. +.+.
T Consensus 155 Ev-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 155 EV-VRAALTSEETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred EE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 54 577888999999999999999985 4453
No 43
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.27 E-value=6.2e-11 Score=111.99 Aligned_cols=140 Identities=11% Similarity=0.188 Sum_probs=94.0
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcC---CCEEEEeeCCc-cHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLN---SEVIILAVKPH-IVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~---ADIVILAVpP~-~v~~VL~eI 196 (303)
|+|||||+|.||.+|..... +++.+ .+.+.|+....++++++++ +|+||+|||+. ++++++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 68999999999996433221 22322 3456788888888888876 69999999987 899999999
Q ss_pred ccccCCCCEEEEecCCC--cHHHHHhhCC-CCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC---
Q psy6714 197 KPVFNESNLLISVAGGV--PIKNMEQALP-KNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT--- 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--~ie~L~~~l~-~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~--- 269 (303)
.+.++++++||.+.... ....+.+.+. .+..++.+ +...+.....|.++++.| +++.++.++++|+.+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~~~~~~ 157 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKALAPEGP 157 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHhcCcCC
Confidence 88888899999664332 3344444442 12223321 112233334566666665 78899999999999996
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+.+.+
T Consensus 158 ~~~~~G~ 164 (299)
T PRK12490 158 GYVHAGP 164 (299)
T ss_pred cEEEECC
Confidence 455543
No 44
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.27 E-value=5.4e-11 Score=112.74 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc-cCCCCEEEEe
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV-FNESNLLISV 209 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~-L~~g~IVVSi 209 (303)
+.|||+|||+|.||.+ ++..+........-++-....+..++++++|+||+|||...+.++++++.++ ++++++||++
T Consensus 3 ~~m~I~iiG~G~~G~~-lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 3 QPKTIAILGAGAWGST-LAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred CCCEEEEECccHHHHH-HHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 5689999999999994 6544322110000000001245678889999999999999999999988764 6778899998
Q ss_pred cCCCcHH-------HHHhhCCCCCceE-EEecCcHHhhhCCc---EEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 210 AGGVPIK-------NMEQALPKNSRII-RAMPNTPALVRQGA---SVFVRGSSASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 210 aaGV~ie-------~L~~~l~~~~~VV-r~mPn~p~~v~~G~---til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
+.|++.+ .+...+.. .+++ -..|+.+.++..+. ++++.+ +.+..+.++++|+..|..++...+
T Consensus 82 s~gi~~~~~~~~s~~~~~~~~~-~~v~~i~gp~~a~ei~~~~~~~~~~ag~---~~~~~~~v~~ll~~~~~~~~~~~d 155 (308)
T PRK14619 82 TKGLDPETTRTPSQIWQAAFPN-HPVVVLSGPNLSKEIQQGLPAATVVASR---DLAAAETVQQIFSSERFRVYTNSD 155 (308)
T ss_pred CCcccCCCCcCHHHHHHHHcCC-CceEEEECCCcHHHHhcCCCeEEEEEeC---CHHHHHHHHHHhCCCcEEEEecCC
Confidence 8777642 33444442 4554 23477776665442 233333 788899999999999976655443
No 45
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.26 E-value=2.4e-10 Score=108.25 Aligned_cols=146 Identities=10% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH--------------HHhhCCC-------------eEecChHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK--------------ATGTMGA-------------KITFDNKEVT 174 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e--------------~l~e~Gv-------------~v~~d~~eav 174 (303)
+|+|+|||+|.||.+ ++..+ ++..+ .+.+.|. ..+.+..+++
T Consensus 2 ~~~V~VIG~G~mG~~-iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 2 MGSVAIIGAGLIGRA-WAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CcEEEEECccHHHHH-HHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 468999999999995 44331 11111 1223442 5667888888
Q ss_pred cCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCC
Q psy6714 175 LNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 175 ~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~ 252 (303)
++||+||+|++.. ....++.++.....++.+|+|...+.....+.+.+.....++..||..|.... ....++++...
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~~~t 159 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPAPWT 159 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCCCCC
Confidence 9999999999865 35566677776666777777888888888888887643467777777653221 24457777788
Q ss_pred CHHHHHHHHHHHHhcCC-cEEcCCCCch
Q psy6714 253 SDQDAQTVINLFKSVGT-CEEVPEYLLD 279 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~-~v~vdE~~~D 279 (303)
+++.++.++++|+.+|+ ++.+..+...
T Consensus 160 ~~~~~~~~~~~~~~lG~~~v~v~~~~~G 187 (308)
T PRK06129 160 APATLARAEALYRAAGQSPVRLRREIDG 187 (308)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCcc
Confidence 99999999999999997 4666544333
No 46
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.26 E-value=1.1e-10 Score=109.62 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=79.8
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+....+. +.+++||+||+|||.+ ....+++++.+.++++++|+|.++++++..+.+.+....+++.+|+..|..+..
T Consensus 72 i~~~~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~ 150 (292)
T PRK07530 72 ISTATDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMK 150 (292)
T ss_pred eEeeCCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCc
Confidence 3445555 4578999999999854 455777888888888999999999999988888765323566655444433334
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
++ -++.+...+++.++.+.++|+.+|+...+
T Consensus 151 ~v-ei~~g~~t~~~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 151 LV-ELIRGIATDEATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred eE-EEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 43 45667788999999999999999985444
No 47
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.25 E-value=4.8e-11 Score=114.48 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=109.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHH-------------HHh----hCCCeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSK-------------ATG----TMGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e-------------~l~----e~Gv~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||.|.+|+ .|+..+.+ ..+ .+. ..++..+.|..+++++||+||++|
T Consensus 1 ~~kI~ViGaGswGT-ALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGT-ALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred CceEEEEcCChHHH-HHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence 58999999999999 57654211 111 111 123456788999999999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCcE-EEEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGAS-VFVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~t-il~~g~~~~~e~ 256 (303)
|.+.++++++++++++.++.+||+++.|+.. +.+++.++...-++-+.||++.++.+|.+ .++. ...+++.
T Consensus 80 Ps~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~v-as~d~~~ 158 (329)
T COG0240 80 PSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVV-ASNDQEA 158 (329)
T ss_pred ChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEE-ecCCHHH
Confidence 9999999999999889899999999999975 45677888544566778999999998864 3333 3447888
Q ss_pred HHHHHHHHHhcCCcEEcCCCC
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.++.+|++=-..++.+++.
T Consensus 159 a~~v~~~f~~~~Frvy~~~Dv 179 (329)
T COG0240 159 AEKVQALFSSPYFRVYTSTDV 179 (329)
T ss_pred HHHHHHHhCCCcEEEEecCch
Confidence 899999999854556665554
No 48
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.23 E-value=9.3e-11 Score=106.18 Aligned_cols=137 Identities=21% Similarity=0.329 Sum_probs=100.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
||+|+|+|+|+||.+ |++.+ ++..+.+ +.++.. ...++.++++.+|||||+||-..+.+++++
T Consensus 1 m~~~~i~GtGniG~a-lA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSA-LALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHH-HHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHH
Confidence 789999999999994 76653 1222221 233443 236788999999999999999999999999
Q ss_pred hccccCCCCEEEEecCCCc-----------------HHHHHhhCCCCCceEEEecCcHHhhh-----C--CcEEEEeCCC
Q psy6714 196 IKPVFNESNLLISVAGGVP-----------------IKNMEQALPKNSRIIRAMPNTPALVR-----Q--GASVFVRGSS 251 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~-----------------ie~L~~~l~~~~~VVr~mPn~p~~v~-----~--G~til~~g~~ 251 (303)
+++.+. ++|||+.++++. .+.+.+.+|. .++|+.+.+++...- . ...+++.++
T Consensus 80 l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~-akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD- 156 (211)
T COG2085 80 LRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG-AKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD- 156 (211)
T ss_pred HHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC-cchhhhhcccCHHHhccCCCcCCceeEEEecC-
Confidence 998884 899999888742 2456677774 589999888775432 1 223444443
Q ss_pred CCHHHHHHHHHHHHhcCC-cEEc
Q psy6714 252 ASDQDAQTVINLFKSVGT-CEEV 273 (303)
Q Consensus 252 ~~~e~~e~V~~Lfs~iG~-~v~v 273 (303)
+.++++.|.+|.+.+|. .+.+
T Consensus 157 -D~~Ak~~v~~L~~~iG~~~ld~ 178 (211)
T COG2085 157 -DAEAKAVVAELAEDIGFRPLDA 178 (211)
T ss_pred -cHHHHHHHHHHHHhcCcceeec
Confidence 78899999999999996 4554
No 49
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.23 E-value=2.4e-10 Score=107.99 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=89.8
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhh---cCCCEEEEeeCCccHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVT---LNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav---~~ADIVILAVpP~~v~~VL~eI 196 (303)
|||||||+|.||.+ ++..+ +++.+ .+.+.|+....+..+++ ..+|+||+|||+..+.++++++
T Consensus 1 M~Ig~IGlG~mG~~-la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 1 MQLGLIGLGRMGAN-IVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred CEEEEEcchHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 68999999999994 55442 22333 34456766556665543 5689999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcH--HHHHhhC-CCCCceEEEecC-cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 197 KPVFNESNLLISVAGGVPI--KNMEQAL-PKNSRIIRAMPN-TPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i--e~L~~~l-~~~~~VVr~mPn-~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
.+.++++++||++.++... ..+.+.+ ..+..++.+... .+.....|.++++.| +++.++.++.+|+.+|.
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVAP 153 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcC
Confidence 9989889999987665433 3333333 223344443211 122233566555555 78899999999999985
No 50
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.22 E-value=1.9e-10 Score=112.25 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=102.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-------------------------HHHHhh--------------CCCeEecChH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV-------------------------SKATGT--------------MGAKITFDNK 171 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~-------------------------~e~l~e--------------~Gv~v~~d~~ 171 (303)
..|||+|||.|.||+ .|+..+... .+.+.+ .++..+.|..
T Consensus 10 ~~~ki~ViGaG~wGt-AlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIGSGNWGS-AISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEECCCHHHH-HHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 468999999999999 466443111 011110 1344567888
Q ss_pred HhhcCCCEEEEeeCCccHHHHHHhhcc--ccCCCCEEEEecCCCcHH---------HHHhhCCCCCceEEEecCcHHhhh
Q psy6714 172 EVTLNSEVIILAVKPHIVPVALNDIKP--VFNESNLLISVAGGVPIK---------NMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 172 eav~~ADIVILAVpP~~v~~VL~eI~~--~L~~g~IVVSiaaGV~ie---------~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
++++++|+||++|||+.++++++++++ ++.++.+|||+++|++.+ .+++.++. ...+-..||++.++.
T Consensus 89 eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~-~~~~LsGPs~A~Eva 167 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI-PCCALSGANVANDVA 167 (365)
T ss_pred HHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC-CeEEEECCCHHHHHH
Confidence 899999999999999999999999998 777777999999999743 34555642 233567799999998
Q ss_pred CCcE-EEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCC
Q psy6714 241 QGAS-VFVRGSSASDQDAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 241 ~G~t-il~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.. .++.+ ..+.+..+.++++|+.=-..++.+++.
T Consensus 168 ~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~Dv 204 (365)
T PTZ00345 168 REEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVPDV 204 (365)
T ss_pred cCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8753 33332 237788889999998655556665543
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=3.3e-10 Score=106.29 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCeEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
++..+.+..+++++||+||+|++.+ ...++++++.++++++++|+|..+++.+..+.+.+....+++.+|+..|.. .
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~-~ 149 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIW-K 149 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCC-c
Confidence 3456677788899999999999855 567888888888888888878778888888887765334678888766532 2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcCCCCchhhhh
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVGTC-EEVPEYLLDGITG 283 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE~~~Da~tA 283 (303)
....-++.+...+++.++.+.++++.+|+. +.+..+.++.++.
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~n 193 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILN 193 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHH
Confidence 344566777888999999999999999985 6666555554443
No 52
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.20 E-value=5.3e-10 Score=105.62 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=95.1
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcC---CCEEEEeeCCc-cHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLN---SEVIILAVKPH-IVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~---ADIVILAVpP~-~v~~VL~eI 196 (303)
|||||||+|.||.++..... +++.+ .+.+.|+.+..+..++++. +|+||+|||+. .+.+++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 68999999999996433322 22322 3456788888888888775 69999999977 889999888
Q ss_pred ccccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC--
Q psy6714 197 KPVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-- 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-- 269 (303)
.+.++++++||++..+.. ...+.+.+. .+..++. .|.. +.....|.++++.| +++.++.++.+|+.+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHHHcccc
Confidence 888888899997655443 233444332 2334443 3332 22334566666655 78899999999999997
Q ss_pred ---cEEcCC
Q psy6714 270 ---CEEVPE 275 (303)
Q Consensus 270 ---~v~vdE 275 (303)
.+++.+
T Consensus 157 ~~~~~~~G~ 165 (301)
T PRK09599 157 EDGYLHAGP 165 (301)
T ss_pred cCCeEeECC
Confidence 355554
No 53
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.20 E-value=2.6e-11 Score=102.02 Aligned_cols=104 Identities=15% Similarity=0.276 Sum_probs=65.0
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhh-----------cH---HHHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNI-----------VS---KATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r-----------~~---e~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
|..+|||+|||.|.+|. .|++.+.+ .. +++. ..+-....+..++++++|+|||+||++.+.+++
T Consensus 7 ~~~~l~I~iIGaGrVG~-~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGT-ALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp -----EEEEECTSCCCC-HHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH
T ss_pred CCCccEEEEECCCHHHH-HHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH
Confidence 44589999999999999 57776432 11 2222 234444466778899999999999999999999
Q ss_pred Hhhccc--cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEec
Q psy6714 194 NDIKPV--FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMP 233 (303)
Q Consensus 194 ~eI~~~--L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mP 233 (303)
++|... +.++++||++++..+.+.|+..-..++.+..+||
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999876 7789999999999998887765544456666665
No 54
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.19 E-value=1.3e-10 Score=109.80 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=92.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh---------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHh---hc
Q psy6714 133 SDKQIAGTTERGPGALIASLN---------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALND---IK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~---------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~e---I~ 197 (303)
|||||||+|+||.+|.....+ +. .+.+.+.|+....++.+++++||+||+|||.. ++++++.. +.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 689999999999964332211 11 23455678888888999999999999999854 77888743 44
Q ss_pred cccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEEecCcHH--hhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC-
Q psy6714 198 PVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRAMPNTPA--LVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT- 269 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~mPn~p~--~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~- 269 (303)
..+.++++||.+ +.++.. .+.+.+. .+..++.. |-... ....|. ++++.+ +++.++.++++|+.+|.
T Consensus 81 ~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~l~~~g~~ 155 (292)
T PRK15059 81 KASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPLFELLGKN 155 (292)
T ss_pred ccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHHHHHHcCC
Confidence 456678888854 445544 3434332 23345543 43322 223454 555555 78899999999999996
Q ss_pred cEEcCCC
Q psy6714 270 CEEVPEY 276 (303)
Q Consensus 270 ~v~vdE~ 276 (303)
.+++.+.
T Consensus 156 ~~~~G~~ 162 (292)
T PRK15059 156 ITLVGGN 162 (292)
T ss_pred cEEeCCc
Confidence 5677653
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.18 E-value=3.8e-10 Score=105.81 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=82.2
Q ss_pred CeEecChHHhhcCCCEEEEeeCCcc-H-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHI-V-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~-v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+..+++++||+||+||+.+. + ..++.++.+.++++++|++.++.+++..+.+.+..-.+++..++-.|... .
T Consensus 69 i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~-~ 147 (288)
T PRK09260 69 LSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHK-M 147 (288)
T ss_pred eEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCccc-C
Confidence 4456777788999999999998554 3 35667787778888888788888999988887753234566665545432 2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
....++.++..+++.++.++.+|+.+|+. +.+.
T Consensus 148 ~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~ 181 (288)
T PRK09260 148 KLVELIRGLETSDETVQVAKEVAEQMGKETVVVN 181 (288)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 35567788888999999999999999974 5554
No 56
>KOG0409|consensus
Probab=99.18 E-value=1.6e-10 Score=109.35 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=92.0
Q ss_pred CCCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHh--
Q psy6714 131 NRSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALND-- 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~e-- 195 (303)
.+++|||||||+||.+|.... ++++.+ .+.+.|..+..++.|++++||+||.+|+ |.++++++..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 378899999999999764433 244444 4667899999999999999999999997 8899999854
Q ss_pred -hccccCCCCEE-EEecCCCcH---HHHHhhCC-CCCceEEEecCcHH--hhhCCc-EEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 196 -IKPVFNESNLL-ISVAGGVPI---KNMEQALP-KNSRIIRAMPNTPA--LVRQGA-SVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 -I~~~L~~g~IV-VSiaaGV~i---e~L~~~l~-~~~~VVr~mPn~p~--~v~~G~-til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
+...+++++.. | ++.-++. .+|.+.+. .++.++.+ |-... ...+|. ++++.+ +++.+++...+|+.
T Consensus 114 Gvl~g~~~g~~~~v-DmSTidp~~s~ei~~~i~~~~~~~vDA-PVSGg~~~A~~G~LtimagG---de~~~~~~~~~~~~ 188 (327)
T KOG0409|consen 114 GVLSGIRPGKKATV-DMSTIDPDTSLEIAKAISNKGGRFVDA-PVSGGVKGAEEGTLTIMAGG---DEALFEAASPVFKL 188 (327)
T ss_pred cceeeccCCCceEE-eccccCHHHHHHHHHHHHhCCCeEEec-cccCCchhhhcCeEEEEecC---cHHHHHHHHHHHHH
Confidence 23334455544 4 3334443 45555443 23344433 11111 112343 455554 88999999999999
Q ss_pred cCC-cEEcC
Q psy6714 267 VGT-CEEVP 274 (303)
Q Consensus 267 iG~-~v~vd 274 (303)
+|+ .+++-
T Consensus 189 mGk~~~~~G 197 (327)
T KOG0409|consen 189 MGKNVVFLG 197 (327)
T ss_pred hcceEEEec
Confidence 996 45554
No 57
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.17 E-value=7.6e-10 Score=104.51 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=90.8
Q ss_pred CCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH---h
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN---D 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~---e 195 (303)
|+||+|||+|.||.++.... ++++.+ .+.+.|+....++.+++++||+||+|||+. +++.++. .
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 46899999999999543322 123333 344668877788889999999999999987 4888874 3
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC-CCCceEEE-ecCcHHhhhCCcE-EEEeCCCCCHHHHHHHHHHHHhcCC-
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP-KNSRIIRA-MPNTPALVRQGAS-VFVRGSSASDQDAQTVINLFKSVGT- 269 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~-~~~~VVr~-mPn~p~~v~~G~t-il~~g~~~~~e~~e~V~~Lfs~iG~- 269 (303)
+.+.++++++||.+..+... ..+.+.+. .+..++.+ +...+.....|.. +++.+ +++.++.++.+|+.+|.
T Consensus 81 i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~ 157 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNE 157 (296)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCC
Confidence 55557788888866544332 34444442 12233322 1111222334544 55544 78899999999999996
Q ss_pred cEEcCC
Q psy6714 270 CEEVPE 275 (303)
Q Consensus 270 ~v~vdE 275 (303)
.+++.+
T Consensus 158 ~~~~g~ 163 (296)
T PRK15461 158 LINAGG 163 (296)
T ss_pred eEeeCC
Confidence 455654
No 58
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.16 E-value=4.7e-10 Score=105.10 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=89.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL--- 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL--- 193 (303)
++|||||||+|.||.+ ++..+ ++..+ .+.+.|+....+..+++++||+||+||| +.+++.++
T Consensus 1 ~~~~IgviG~G~mG~~-~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~ 79 (296)
T PRK11559 1 MTMKVGFIGLGIMGKP-MSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGE 79 (296)
T ss_pred CCceEEEEccCHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCc
Confidence 3679999999999994 44432 22222 3456788777788889999999999998 55677776
Q ss_pred HhhccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecC---cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPN---TPALVRQGASVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn---~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
.++.+.++++++||.+. .++. ..+.+.+.. +..++.. |. .+.......++++.+ +++.++.+..+|+.
T Consensus 80 ~~~~~~~~~g~iiid~s-t~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~l~~ 154 (296)
T PRK11559 80 NGIIEGAKPGTVVIDMS-SIAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKA 154 (296)
T ss_pred chHhhcCCCCcEEEECC-CCCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHH
Confidence 44666777889888543 3443 345555432 2223222 21 122222224555554 67889999999999
Q ss_pred cCCc-EEcC
Q psy6714 267 VGTC-EEVP 274 (303)
Q Consensus 267 iG~~-v~vd 274 (303)
+|.. +.+.
T Consensus 155 ~~~~~~~~g 163 (296)
T PRK11559 155 MAGSVVHTG 163 (296)
T ss_pred hcCCeEEeC
Confidence 9974 5454
No 59
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.15 E-value=4.5e-10 Score=113.49 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCCcEEEEcCChhhHHHHHHH---------HhhcHHH---Hhh----CCCe---EecChHHhhcC---CCEEEEeeC-Cc
Q psy6714 131 NRSDKQIAGTTERGPGALIAS---------LNIVSKA---TGT----MGAK---ITFDNKEVTLN---SEVIILAVK-PH 187 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a---------l~r~~e~---l~e----~Gv~---v~~d~~eav~~---ADIVILAVp-P~ 187 (303)
.+++|||||||.||.+|.... +|++.++ +.+ .|.. ...++.++++. +|+||+||+ +.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 467899999999999653332 2444433 322 2543 56788888875 999999997 77
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~L 263 (303)
.+++|+.++.+.+.+|++||.+..... ...+.+.+. .+..++.+ +-..+.....|.++++.| +++..+.++.+
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~~v~pv 161 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYKNIEDI 161 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHHHHHHH
Confidence 788999889888889999996644332 234444442 22333322 112222334566666665 78899999999
Q ss_pred HHhcCC
Q psy6714 264 FKSVGT 269 (303)
Q Consensus 264 fs~iG~ 269 (303)
|+.+|.
T Consensus 162 L~~ia~ 167 (493)
T PLN02350 162 LEKVAA 167 (493)
T ss_pred HHHHhh
Confidence 999994
No 60
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.14 E-value=6.2e-10 Score=105.91 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=95.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcHH---HHhh--------------CCCeEecChHHhh-cCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVSK---ATGT--------------MGAKITFDNKEVT-LNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e--------------~Gv~v~~d~~eav-~~ADIVILAV 184 (303)
|||+|||.|.||+ .|+..+. +..+ .+.+ .++....+..+++ .++|+||+||
T Consensus 1 MkI~IiGaGa~G~-ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 1 MKISILGAGSFGT-AIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred CEEEEECcCHHHH-HHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 6899999999999 4664421 1122 1211 0223445666665 5899999999
Q ss_pred CCccHHHHHHhhcc-ccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCc-EEEEeCCCCCHH
Q psy6714 185 KPHIVPVALNDIKP-VFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGA-SVFVRGSSASDQ 255 (303)
Q Consensus 185 pP~~v~~VL~eI~~-~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~g~~~~~e 255 (303)
|++++.++++++.+ ++.+++.||++++|+.. +.+.+.++...-.+...|+.+.++..+. +.+... ..+.+
T Consensus 80 ks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~~~~~ 158 (326)
T PRK14620 80 PTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-GQNET 158 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-cCCHH
Confidence 99999999999998 88778888999999965 5677777742222344577665555442 223332 22455
Q ss_pred HHHHHHHHHHhcCCcEEcCCCC
Q psy6714 256 DAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 256 ~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
..+.+.++|+.-+..++++++.
T Consensus 159 ~~~~l~~~l~~~~~~~~~~~Di 180 (326)
T PRK14620 159 LGSSLISKLSNENLKIIYSQDI 180 (326)
T ss_pred HHHHHHHHHCCCCeEEEecCcc
Confidence 5677778887777777776554
No 61
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.13 E-value=1.8e-09 Score=102.41 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=103.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------cHHHHhhCCCeEe-------------cChHHhhcCCCEEEEeeCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------VSKATGTMGAKIT-------------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~~e~l~e~Gv~v~-------------~d~~eav~~ADIVILAVpP 186 (303)
++|||+|||+|.||+ .|+..+.+ ..+.+.+.|+... .+..+.+..+|+||||||.
T Consensus 4 ~~m~I~IiG~GaiG~-~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-FYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred cCcEEEEECCCHHHH-HHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 368999999999999 66654321 1223334444321 1223346789999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcH------Hhhh---CCcEEEEeCCCCC---
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTP------ALVR---QGASVFVRGSSAS--- 253 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p------~~v~---~G~til~~g~~~~--- 253 (303)
.++.++++.+.+.+.++.+||++.+|+.. +.+.+.++. .+++.....+. ..+. .|.+.+-.....+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~ 161 (313)
T PRK06249 83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADD 161 (313)
T ss_pred CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccc
Confidence 99999999999988888899999999986 568888875 35554432222 1111 2222222112212
Q ss_pred --HHHHHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHHH
Q psy6714 254 --DQDAQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPAY 291 (303)
Q Consensus 254 --~e~~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPAf 291 (303)
.+..+.+.++|+..|..+.++++. ++.++|+.+|.-+.
T Consensus 162 ~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~ 214 (313)
T PRK06249 162 GITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDP 214 (313)
T ss_pred hHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHH
Confidence 456677889999999877666543 56678887775443
No 62
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.12 E-value=1e-09 Score=104.47 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=89.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeE----------------ecChHHhhcCCCEEEE
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKI----------------TFDNKEVTLNSEVIIL 182 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v----------------~~d~~eav~~ADIVIL 182 (303)
+||||+|||+|.||+ .++..+. +. .+.+.+.|+.+ ..+..+.+.++|+||+
T Consensus 1 ~~mkI~IiG~G~mG~-~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 79 (341)
T PRK08229 1 MMARICVLGAGSIGC-YLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLV 79 (341)
T ss_pred CCceEEEECCCHHHH-HHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEE
Confidence 478999999999999 4554321 11 12334445432 1222356789999999
Q ss_pred eeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEE-ec--------CcHHhhhCCcEEEEeCCCC
Q psy6714 183 AVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRA-MP--------NTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 183 AVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~-mP--------n~p~~v~~G~til~~g~~~ 252 (303)
|||+.++.++++++.+.+.++++||++.+|+.. +.+++.++. ..++.. ++ ........|. +..+.
T Consensus 80 ~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~pg~~~~~~~g~--l~~~~-- 154 (341)
T PRK08229 80 TVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG-ATVLAGMVPFNVISRGPGAFHQGTSGA--LAIEA-- 154 (341)
T ss_pred EecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC-CcEEEEEEEEEEEecCCceEEecCCCc--eEecC--
Confidence 999999999999999888888999999999974 678888774 333332 11 1111111222 22222
Q ss_pred CHHHHHHHHHHHHhcCCcEEcC
Q psy6714 253 SDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
.+..+.+.++|+..|..+++.
T Consensus 155 -~~~~~~~~~~l~~~g~~~~~~ 175 (341)
T PRK08229 155 -SPALRPFAAAFARAGLPLVTH 175 (341)
T ss_pred -CchHHHHHHHHHhcCCCceec
Confidence 244688999999999765554
No 63
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.11 E-value=3e-10 Score=97.82 Aligned_cols=114 Identities=21% Similarity=0.298 Sum_probs=78.3
Q ss_pred cEEEEcCChhhHHHHHHHHh----------hcHH---HHhh--------------CCCeEecChHHhhcCCCEEEEeeCC
Q psy6714 134 DKQIAGTTERGPGALIASLN----------IVSK---ATGT--------------MGAKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~----------r~~e---~l~e--------------~Gv~v~~d~~eav~~ADIVILAVpP 186 (303)
||+|||.|+||.+ ++..+. +..+ .+.+ ..+.++.|.+++++++|+||++||.
T Consensus 1 KI~ViGaG~~G~A-lA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTA-LAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHH-HHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHH-HHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence 7999999999994 554321 1111 1111 1345678888999999999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCc-EEEEe
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGA-SVFVR 248 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~ 248 (303)
+.++++++++.++++++++||++.+|+.. +.+++.++...-++-..|+++.++..+. +.++.
T Consensus 80 ~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~ 149 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVI 149 (157)
T ss_dssp GGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEE
Confidence 99999999999999999999999999842 5677777753345566799999998874 34443
No 64
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.10 E-value=6.5e-10 Score=107.70 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=83.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHH---------HHHhhCCCCCceEEEecC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK---------NMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---------~L~~~l~~~~~VVr~mPn 234 (303)
++.+.|.+++++++|+||++||++.++++++++.++++++++|||++.|++.+ .+++.++. ...+-..||
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~-~~~~lsGP~ 148 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI-PCGVLSGAN 148 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC-CeEEeeCcc
Confidence 34567888999999999999999999999999999998889999999999865 34555632 234567799
Q ss_pred cHHhhhCCcE-EEEe-CCCCC--HHHHHHHHHHHHhcCCcEEcCCCC
Q psy6714 235 TPALVRQGAS-VFVR-GSSAS--DQDAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 235 ~p~~v~~G~t-il~~-g~~~~--~e~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
++.++..|.. .++. +.+.+ .+..+.++++|+.=-..++.+.+.
T Consensus 149 ~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv 195 (342)
T TIGR03376 149 LANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDV 195 (342)
T ss_pred hHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 9999988752 2222 22111 778899999998644445555443
No 65
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.09 E-value=1.7e-09 Score=101.09 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=92.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc---------H---HHHhhCCCeE-------------ecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV---------S---KATGTMGAKI-------------TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~---------~---e~l~e~Gv~v-------------~~d~~eav~~ADIVILAVpP~ 187 (303)
|||+|||+|.||. .++..+.+. . +.+.+.|+.+ ..+..++++.+|+||+|||..
T Consensus 1 mkI~IiG~G~iG~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGG-TFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHH-HHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 7899999999999 565443210 1 2233444432 234455568899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEEecCcHHh------hh-CCcEEEEeCC--CCCHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRAMPNTPAL------VR-QGASVFVRGS--SASDQDA 257 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~mPn~p~~------v~-~G~til~~g~--~~~~e~~ 257 (303)
+++++++++.+.+.++++||++.+|+. .+.+.+.++. ..++..+...+.. +. .+...+..|. ....+..
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~ 158 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERT 158 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHH
Confidence 999999999988888889999999997 4668877774 2444332222211 11 1111122322 2234566
Q ss_pred HHHHHHHHhcCCcEEcCCC
Q psy6714 258 QTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 258 e~V~~Lfs~iG~~v~vdE~ 276 (303)
+.+.++|+..|..++++++
T Consensus 159 ~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 159 RAVRDALAGARLEVVLSEN 177 (305)
T ss_pred HHHHHHHHhCCCCceecHH
Confidence 7888999999987666544
No 66
>KOG2380|consensus
Probab=99.09 E-value=1.1e-09 Score=105.30 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCCcccccC-CCcEEEEcCChhhHHHHHHHHh----------h--cHHHHhhCCCeEecChHHhh-cCCCEEEEeeCC
Q psy6714 121 TTPSSREARWN-RSDKQIAGTTERGPGALIASLN----------I--VSKATGTMGAKITFDNKEVT-LNSEVIILAVKP 186 (303)
Q Consensus 121 ~~~~~~~~~~~-~mkIgIIGlG~MG~~~La~al~----------r--~~e~l~e~Gv~v~~d~~eav-~~ADIVILAVpP 186 (303)
.+.....-||. -.+|||||.|+||. .++..+- + ..+.....|..-.+++.+++ +..|+|++||..
T Consensus 40 ~~~~~s~~~~k~tl~IaIIGfGnmGq-flAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi 118 (480)
T KOG2380|consen 40 MVSEDSIEQWKATLVIAIIGFGNMGQ-FLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI 118 (480)
T ss_pred ccCcchhhhcccceEEEEEecCcHHH-HHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh
Confidence 34445555555 36899999999999 6665421 1 11223355665555666654 579999999999
Q ss_pred ccHHHHHHhhccc-cCCCCEEEEec--CCCcHHHHHhhCCCCCceEEEecCcHHh-hh---CCcEEEEeCCCC-----CH
Q psy6714 187 HIVPVALNDIKPV-FNESNLLISVA--GGVPIKNMEQALPKNSRIIRAMPNTPAL-VR---QGASVFVRGSSA-----SD 254 (303)
Q Consensus 187 ~~v~~VL~eI~~~-L~~g~IVVSia--aGV~ie~L~~~l~~~~~VVr~mPn~p~~-v~---~G~til~~g~~~-----~~ 254 (303)
..++.++....+. ++.+++++... .-...+.+++.||++..++..||++.-. ++ +|...++..... -+
T Consensus 119 lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ 198 (480)
T KOG2380|consen 119 LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRP 198 (480)
T ss_pred hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccch
Confidence 9999999887665 77888887443 2233466788999999999999988543 44 455554432222 37
Q ss_pred HHHHHHHHHHHhcCC-cEEcCCCCchhhhhhcc
Q psy6714 255 QDAQTVINLFKSVGT-CEEVPEYLLDGITGLSG 286 (303)
Q Consensus 255 e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsG 286 (303)
+..+.+.++|.+.|. .++++-++||.++|=+-
T Consensus 199 ercE~fleIf~cegckmVemS~eeHDkiaAdsQ 231 (480)
T KOG2380|consen 199 ERCEFFLEIFACEGCKMVEMSYEEHDKIAADSQ 231 (480)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeecccccccchh
Confidence 889999999999995 79999889999887653
No 67
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.07 E-value=1.2e-09 Score=109.90 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=91.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hhh----CC--CeEecChHHhhc---CCCEEEEeeC-Ccc
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TGT----MG--AKITFDNKEVTL---NSEVIILAVK-PHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e----~G--v~v~~d~~eav~---~ADIVILAVp-P~~ 188 (303)
|++|||||+|.||.+ |+..+ +++.++ +.+ .| +..+.+++++++ ++|+||++|+ ++.
T Consensus 1 ~~~IgvIGLG~MG~~-lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQN-LALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 468999999999995 55442 333332 222 25 346778888886 5899999986 668
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHHH--HhhC-CCCCceEEEe-cCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKNM--EQAL-PKNSRIIRAM-PNTPALVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L--~~~l-~~~~~VVr~m-Pn~p~~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
+++|++++.+++.++++||...++...+.. .+.+ ..+..++.+- ..-+.....|.++++.| +++..+.++++|
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~piL 156 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVKDIL 156 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHH
Confidence 899999999999999999988776654332 2222 2223333221 11122233566666666 788999999999
Q ss_pred HhcCCc
Q psy6714 265 KSVGTC 270 (303)
Q Consensus 265 s~iG~~ 270 (303)
+.+|..
T Consensus 157 ~~ia~~ 162 (470)
T PTZ00142 157 EKCSAK 162 (470)
T ss_pred HHHhhh
Confidence 999954
No 68
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.04 E-value=3.8e-09 Score=99.14 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=91.4
Q ss_pred EEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH---Hhhccc
Q psy6714 137 IAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL---NDIKPV 199 (303)
Q Consensus 137 IIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL---~eI~~~ 199 (303)
|||+|.||.+ ++..+ +++.+ .+.+.|+..+.++.++++++|+||+|||+ +++++++ +++.+.
T Consensus 1 ~IGlG~mG~~-mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGP-MAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK 79 (288)
T ss_pred CCcccHhHHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence 7999999995 44332 23322 34567888888899999999999999996 7788898 677777
Q ss_pred cCCCCEEEEecCCCcHHH---HHhhCC-CCCceEEEecCc--HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC-cE
Q psy6714 200 FNESNLLISVAGGVPIKN---MEQALP-KNSRIIRAMPNT--PALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT-CE 271 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~---L~~~l~-~~~~VVr~mPn~--p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~-~v 271 (303)
+.++++||++. +++.+. +.+.+. .+..++.+ |-. +.....|. ++++.+ +++.++.++.+|+.+|. .+
T Consensus 80 ~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 80 VAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred CCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeE
Confidence 88889888665 676643 333332 22344433 322 22223454 455555 67788999999999997 56
Q ss_pred EcCCCC
Q psy6714 272 EVPEYL 277 (303)
Q Consensus 272 ~vdE~~ 277 (303)
++.+..
T Consensus 155 ~~g~~g 160 (288)
T TIGR01692 155 HCGDHG 160 (288)
T ss_pred eeCCCC
Confidence 676643
No 69
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.02 E-value=4.5e-09 Score=98.45 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=88.5
Q ss_pred cEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH---Hhh
Q psy6714 134 DKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL---NDI 196 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL---~eI 196 (303)
||||||+|.||.+ ++..+ ++..+ .+.+.|.....+..+++++||+||+|||.. .++.++ ..+
T Consensus 1 ~IgvIG~G~mG~~-iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSP-MSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence 5999999999995 44332 23333 345667777778888999999999999864 666676 335
Q ss_pred ccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecCcH--HhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 197 KPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPNTP--ALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn~p--~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
...++++++||++. .++. ..+.+.+.. +..++. .|-.. .....|. .+++.+ +++.++.++++|+.+|.
T Consensus 80 ~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~lg~ 154 (291)
T TIGR01505 80 IEGAKPGKTLVDMS-SISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPLFEALGK 154 (291)
T ss_pred hhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHHHHHhcC
Confidence 55667888888654 3333 345555532 234444 24321 1122343 455554 67889999999999997
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+++.+
T Consensus 155 ~~~~~g~ 161 (291)
T TIGR01505 155 NIVLVGG 161 (291)
T ss_pred CeEEeCC
Confidence 456654
No 70
>PLN02858 fructose-bisphosphate aldolase
Probab=98.91 E-value=6.6e-09 Score=115.96 Aligned_cols=135 Identities=8% Similarity=0.114 Sum_probs=91.8
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---Hhh
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL---NDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL---~eI 196 (303)
+||||||+|.||.+|.... ++++.+ .+.+.|+..+.++.+++++||+||+||+ +.++++|+ ..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 5699999999999754433 234433 4567799888999999999999999997 67788887 456
Q ss_pred ccccCCCCEEEEecCCCcH---HHHHhhCCC-C--CceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 197 KPVFNESNLLISVAGGVPI---KNMEQALPK-N--SRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~--~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
.+.+.++++||.+ +-++. ..+.+.+.. + ..++.+ +-..+.....| .++++.| +++.++.++.+|+.+|
T Consensus 85 ~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g 160 (1378)
T PLN02858 85 AKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMC 160 (1378)
T ss_pred HhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhc
Confidence 6667788888844 33443 345444432 2 122322 11222233345 4566666 7888999999999999
Q ss_pred CcE
Q psy6714 269 TCE 271 (303)
Q Consensus 269 ~~v 271 (303)
..+
T Consensus 161 ~~i 163 (1378)
T PLN02858 161 QKL 163 (1378)
T ss_pred Cce
Confidence 754
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=98.89 E-value=1.5e-08 Score=113.15 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=92.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---h
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN---D 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~---e 195 (303)
+++|||||+|.||.+|....+ ++..+ .+.+.|.....++.+++++||+||+||| |+++++|+. .
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 578999999999997544332 23333 3456788777889999999999999998 888999983 4
Q ss_pred hccccCCCCEEEEecCCCcH---HHHHhhCCC---CCceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPI---KNMEQALPK---NSRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i---e~L~~~l~~---~~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+.+.+.++++||.+ +.++. ..+.+.+.. +..++.+ +-..+.....| .++++.| +++.++.++.+|+.+
T Consensus 404 ~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~plL~~l 479 (1378)
T PLN02858 404 AVSALPAGASIVLS-STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAGSVLSAL 479 (1378)
T ss_pred HHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHHHHHHHH
Confidence 55667788888844 33443 344444421 2233322 11223333445 4667776 678899999999999
Q ss_pred CCcEE
Q psy6714 268 GTCEE 272 (303)
Q Consensus 268 G~~v~ 272 (303)
|..++
T Consensus 480 g~~i~ 484 (1378)
T PLN02858 480 SEKLY 484 (1378)
T ss_pred hCcEE
Confidence 97543
No 72
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.88 E-value=3e-08 Score=94.68 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=96.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEe------------cChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKIT------------FDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~------------~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|+|+|.||+ .++..+.+ ..+++++.|+.+. .+..+....+|+||++||..+
T Consensus 1 mkI~IlGaGAvG~-l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGS-LLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHH-HHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 7999999999999 55543211 1245555565432 222345568999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHH-HHhhCCCCCceEEEecCcHHh---------hhCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKN-MEQALPKNSRIIRAMPNTPAL---------VRQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~-L~~~l~~~~~VVr~mPn~p~~---------v~~G~til~~g~~~~~e~~e 258 (303)
+.++++.+.+++++++.|+++.+|+...+ +.+.++.. .++..+-.+.+. .+.|.+.+-......++..+
T Consensus 80 ~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~ 158 (307)
T COG1893 80 LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVK 158 (307)
T ss_pred HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHH
Confidence 99999999999999999999999998754 77777753 344433222221 11122222222232446788
Q ss_pred HHHHHHHhcCCcEEcCCC
Q psy6714 259 TVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~ 276 (303)
.+.++|+..|..+.++++
T Consensus 159 ~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 159 ALAELFKEAGLEVELHPD 176 (307)
T ss_pred HHHHHHHhCCCCeEEcHH
Confidence 899999999988777654
No 73
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.85 E-value=5.7e-08 Score=98.64 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH--------------HHhhCC-------------CeEecChHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK--------------ATGTMG-------------AKITFDNKEVTL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e--------------~l~e~G-------------v~v~~d~~eav~ 175 (303)
..+|||||+|.||.++..... ++..+ ++.+.| ++.+.+..+ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 357999999999996433221 11111 123445 466667655 56
Q ss_pred CCCEEEEeeC-CccHHHHH-HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCC
Q psy6714 176 NSEVIILAVK-PHIVPVAL-NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253 (303)
Q Consensus 176 ~ADIVILAVp-P~~v~~VL-~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~ 253 (303)
+||+||.||+ ...++..+ .++....+++++|.|.++.+++..|...+....+++.+|.--|..+. ..+.++.+...+
T Consensus 86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv~g~~Ts 164 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVVSGLATD 164 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEeCCCCCC
Confidence 9999999997 56666554 56766677888887888999999888877533356666544433332 356667777889
Q ss_pred HHHHHHHHHHHHhcCCc-EEcC
Q psy6714 254 DQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 254 ~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
++.++.+..+++.+|+. +.+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~ 186 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAK 186 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEec
Confidence 99999999999999974 5554
No 74
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.84 E-value=1.5e-08 Score=102.05 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=86.9
Q ss_pred cEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC-----CCeEecChHHhh---cCCCEEEEeeCC-ccHHH
Q psy6714 134 DKQIAGTTERGPGALIASL----------NIVSK---ATGTM-----GAKITFDNKEVT---LNSEVIILAVKP-HIVPV 191 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al----------~r~~e---~l~e~-----Gv~v~~d~~eav---~~ADIVILAVpP-~~v~~ 191 (303)
+|||||+|.||.+ |+..+ +++.+ .+.+. ++....+..+++ +++|+||+|||+ ..+.+
T Consensus 1 ~IG~IGLG~MG~~-mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVMGSN-LALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred CEEEEeeHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 4999999999995 55432 23333 23333 255666777766 468999999987 78999
Q ss_pred HHHhhccccCCCCEEEEecCCCcHH--HHHhhC-CCCCceEEEec-CcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIK--NMEQAL-PKNSRIIRAMP-NTPALVRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l-~~~~~VVr~mP-n~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
|+.++.+++.++++||...+....+ ...+.+ ..+..++.+-. ..+.....|.++++.| +++..+.++++|+.+
T Consensus 80 Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPIFQKI 156 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHHHHHH
Confidence 9999999998999999776544333 222223 22333333321 1122233566555555 788999999999999
Q ss_pred CCc
Q psy6714 268 GTC 270 (303)
Q Consensus 268 G~~ 270 (303)
|..
T Consensus 157 a~~ 159 (467)
T TIGR00873 157 AAK 159 (467)
T ss_pred hhh
Confidence 964
No 75
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.83 E-value=3.6e-08 Score=93.57 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---Hhh-CCCeEec-----------ChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TGT-MGAKITF-----------DNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~e-~Gv~v~~-----------d~~eav~~ADIVILAVp 185 (303)
+.|||+|||+|.||+ .++..+. +..++ +.+ .|+.+.. ...+....+|+||+|||
T Consensus 1 ~~m~I~IiGaGaiG~-~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 1 MSMTWHILGAGSLGS-LWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred CCceEEEECCCHHHH-HHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECC
Confidence 358999999999999 5554432 11122 322 3454321 11122357899999999
Q ss_pred CccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHh------hh-CCcEEEEeCCCCCHHHH
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPAL------VR-QGASVFVRGSSASDQDA 257 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~------v~-~G~til~~g~~~~~e~~ 257 (303)
..++.++++++.+++.++++||++.+|+.. +.+.+.++. .+++.....+.+. +. .+...+.+|.. +.+..
T Consensus 80 ~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~~~ 157 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNPTA 157 (305)
T ss_pred HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCcch
Confidence 999999999999999999999999999986 567888874 3455443333221 11 12212233422 22345
Q ss_pred HHHHHHHHhcCCcEEcCCCC-------------chhhhhhccch
Q psy6714 258 QTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSG 288 (303)
Q Consensus 258 e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsg 288 (303)
+.+.++|...|..+.++++. ++.++|+..+-
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~ 201 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCR 201 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCC
Confidence 67888899888776665432 55666665543
No 76
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.82 E-value=9.5e-08 Score=96.99 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=97.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH--------------HHhhCC-------------CeEecChHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK--------------ATGTMG-------------AKITFDNKEVTL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e--------------~l~e~G-------------v~v~~d~~eav~ 175 (303)
-.||+|||+|.||.++..... ++..+ .+.+.| ++.+.+..+ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 467999999999996433221 11111 122334 345667654 56
Q ss_pred CCCEEEEeeC-CccHHHH-HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCC
Q psy6714 176 NSEVIILAVK-PHIVPVA-LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253 (303)
Q Consensus 176 ~ADIVILAVp-P~~v~~V-L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~ 253 (303)
+||+||.||+ ...++.. +.++....+++++|.|-++++++..|.+.+....+++.+|.--|..+. ...-++.+...+
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv~g~~Ts 162 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVVSGLATA 162 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEeCCCCCC
Confidence 9999999997 4555544 566777777888888888899998888877533456666644333222 456677888889
Q ss_pred HHHHHHHHHHHHhcCCc-EEcC
Q psy6714 254 DQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 254 ~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
++.++.+..+++.+|+. +.+.
T Consensus 163 ~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 163 AEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred HHHHHHHHHHHHHcCCeeeEeC
Confidence 99999999999999985 5553
No 77
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=1.5e-07 Score=90.65 Aligned_cols=141 Identities=11% Similarity=0.164 Sum_probs=98.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcH--------------HHHhhCC---------CeEecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVS--------------KATGTMG---------AKITFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~--------------e~l~e~G---------v~v~~d~~eav~~ADI 179 (303)
..||+|||+|.||.++..... +... +.+.+.| +..+.+.++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 457999999999996433221 1111 1111222 2455677788999999
Q ss_pred EEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 180 IILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 180 VILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
||-||+ ...++ +++.++..+.+++++|-|-.+++.+..+.+.+..-.+++.+|+--|...- ...=++++...+++..
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~-pLVEVv~g~~T~~e~~ 165 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLL-PLVEVLGGERTAPEAV 165 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccC-ceEEEeCCCCCCHHHH
Confidence 999997 44455 45577877788888777777899999999887643578888875553221 1233467788899999
Q ss_pred HHHHHHHHhcCC-cEEc
Q psy6714 258 QTVINLFKSVGT-CEEV 273 (303)
Q Consensus 258 e~V~~Lfs~iG~-~v~v 273 (303)
+.+.+++..+|+ ++.+
T Consensus 166 ~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 166 DAAMGIYRALGMRPLHV 182 (321)
T ss_pred HHHHHHHHHcCCEeEec
Confidence 999999999996 5566
No 78
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=1.2e-07 Score=89.35 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=78.1
Q ss_pred EecChHHhhcCCCEEEEeeC-CccHH-HHHHhhcccc-CCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 166 ITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVF-NESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L-~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.+.+. +.+++||+||-||+ ...++ +++..+.... +++++|+|...++.+..+...+....+++.+|.-.|..+...
T Consensus 75 ~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~l 153 (286)
T PRK07819 75 FTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPL 153 (286)
T ss_pred eeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCce
Confidence 55666 56899999999997 44455 4446666666 789999999999999999887654346777776655444444
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHH-hcCCc-EEcC
Q psy6714 243 ASVFVRGSSASDQDAQTVINLFK-SVGTC-EEVP 274 (303)
Q Consensus 243 ~til~~g~~~~~e~~e~V~~Lfs-~iG~~-v~vd 274 (303)
+ =++.+...+++.++.+..++. .+|+. +.+.
T Consensus 154 v-Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~ 186 (286)
T PRK07819 154 V-ELVPTLVTSEATVARAEEFASDVLGKQVVRAQ 186 (286)
T ss_pred E-EEeCCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence 3 345667889999999999988 59975 4453
No 79
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.78 E-value=8.3e-08 Score=94.56 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=82.7
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHHH---h-------------------hCC-CeEecChHHhhcCCCE
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKAT---G-------------------TMG-AKITFDNKEVTLNSEV 179 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~l---~-------------------e~G-v~v~~d~~eav~~ADI 179 (303)
|||+|||+|.||.+ ++..+ ++..++. . +.| +..+.+..+++++||+
T Consensus 1 mkI~vIGlG~~G~~-lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv 79 (411)
T TIGR03026 1 MKIAVIGLGYVGLP-LAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV 79 (411)
T ss_pred CEEEEECCCchhHH-HHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence 68999999999995 44332 1122211 1 124 5566777888999999
Q ss_pred EEEeeC-Cc---------cHHHHHHhhccccCCCCEEEEecCCCc---HHHH-HhhCCC------CC-ceEEEecCcHHh
Q psy6714 180 IILAVK-PH---------IVPVALNDIKPVFNESNLLISVAGGVP---IKNM-EQALPK------NS-RIIRAMPNTPAL 238 (303)
Q Consensus 180 VILAVp-P~---------~v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L-~~~l~~------~~-~VVr~mPn~p~~ 238 (303)
||+||| |. .+.++++++.++++++++||.. +++. ...+ ...+.. .. ..+...|...
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~-- 156 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL-- 156 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC--
Confidence 999998 43 3788888888888888888843 2332 2233 222211 01 1234444332
Q ss_pred hhCCc---------EEEEeCCCCCHHHHHHHHHHHHhcC--CcEEcC
Q psy6714 239 VRQGA---------SVFVRGSSASDQDAQTVINLFKSVG--TCEEVP 274 (303)
Q Consensus 239 v~~G~---------til~~g~~~~~e~~e~V~~Lfs~iG--~~v~vd 274 (303)
..|. .++.. .+++..+.++++|+.++ .++.+.
T Consensus 157 -~~G~~~~~~~~~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (411)
T TIGR03026 157 -REGNAVHDLLNPDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVT 199 (411)
T ss_pred -CCCChhhhhcCCCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcC
Confidence 2222 34444 27889999999999997 355554
No 80
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.74 E-value=1.1e-07 Score=91.32 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=90.1
Q ss_pred HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC-------CCCceEE
Q psy6714 159 TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP-------KNSRIIR 230 (303)
Q Consensus 159 l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~-------~~~~VVr 230 (303)
+.+.|+.++.+..++++++|+||+||| +.++.+|+..+.+.+.+|++||.+ +-++.+.+...|. .+..|..
T Consensus 64 LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s 142 (341)
T TIGR01724 64 VEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISS 142 (341)
T ss_pred HHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeec
Confidence 567799988899999999999999998 556889988888888899988844 5566665555432 2345566
Q ss_pred EecC-cHHhhhCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccc
Q psy6714 231 AMPN-TPALVRQGASVFVRG-----SSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGS 287 (303)
Q Consensus 231 ~mPn-~p~~v~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGs 287 (303)
+||. +|..-+++..++... .-.++++++.+.+|.+++|+ .+.++.+....+..+++.
T Consensus 143 ~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~ 206 (341)
T TIGR01724 143 MHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSL 206 (341)
T ss_pred cCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHH
Confidence 6654 244445554443321 24478999999999999997 566776665555544443
No 81
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.69 E-value=6.2e-08 Score=101.34 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=94.3
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHh---hCCCC-CceEEEecCcHHhh-----------hCCcE
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ---ALPKN-SRIIRAMPNTPALV-----------RQGAS 244 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~-~~VVr~mPn~p~~v-----------~~G~t 244 (303)
||||||+..+.++++++.+++++++ +|+++++++...++. .++.. ..+|..||+...+. ....+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~-~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDAST-IVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCc-EEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 7999999999999999999997775 577889999765444 55431 34677777654332 22356
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
++|+.+..+++..++++++++.+|. +++++.++||.++|++|+.|-++...+-..
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~ 135 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQ 135 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888889999999999999996 577899999999999999999988776443
No 82
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.65 E-value=3.7e-07 Score=80.67 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCeEecChHHhhcCCCEEEEeeCC-ccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKP-HIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP-~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
.+....+..+++ +||+||=|++- -.+ .+++.+|...+.++++|.|-..++++..|...+....+++.+|+-.|....
T Consensus 66 ~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~ 144 (180)
T PF02737_consen 66 RISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM 144 (180)
T ss_dssp TEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT-
T ss_pred hcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC
Confidence 345677888877 99999999962 222 377888888888999999999999999999988654578888866554221
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
...=++.+...+++.++.+..++..+|+. +.+
T Consensus 145 -~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 145 -PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp --EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 22334677888999999999999999985 444
No 83
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.62 E-value=1.9e-07 Score=78.62 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=72.4
Q ss_pred EEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecC--------------hHHhhcCCCEEEEeeCCcc
Q psy6714 135 KQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFD--------------NKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 135 IgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d--------------~~eav~~ADIVILAVpP~~ 188 (303)
|+|+|.|.||. .++-.+.+ ..+.+++.|+.+... ..+..+.+|+||+|||..+
T Consensus 1 I~I~G~GaiG~-~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGS-LYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHH-HHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHH-HHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 78999999999 56654421 123344555543221 1235678999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p 236 (303)
++++++.+++++.+++.||++.+|+.. +.+.+.++. ..++..+....
T Consensus 80 ~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~g 127 (151)
T PF02558_consen 80 LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR-PRVLGGVTTIG 127 (151)
T ss_dssp HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG-SGEEEEEEEEE
T ss_pred hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC-CcEEEEEEeEe
Confidence 999999999999888899999999985 567778864 46766665543
No 84
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.58 E-value=2.9e-07 Score=91.21 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred hcCCCEEEEeeCC----------ccHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCC---C--C--------c-
Q psy6714 174 TLNSEVIILAVKP----------HIVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPK---N--S--------R- 227 (303)
Q Consensus 174 v~~ADIVILAVpP----------~~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~---~--~--------~- 227 (303)
+++||+||+|||. ..+.+++++|.++++++++|| |++..-+.+.+...+.. . . .
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999985 578888888988898999887 34333334444332211 0 0 0
Q ss_pred eEEEec-----CcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 228 IIRAMP-----NTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 228 VVr~mP-----n~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.+-| .....-......++.+. +++..+.++++|+.++..
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~~~~vvgG~--~~~~~~~~~~ly~~~~~~ 198 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIKNDRVIGGM--TPVCSARASELYKIFLEG 198 (415)
T ss_pred EEEECCCccCCCChhhhhcCCCEEEEeC--CHHHHHHHHHHHHHhcCC
Confidence 112223 11111111223445542 678899999999999853
No 85
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.55 E-value=3.6e-07 Score=90.95 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCcEEEEcCChhhHHHHHHH--------HhhcHHH---Hh---------------hCCCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIAS--------LNIVSKA---TG---------------TMGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a--------l~r~~e~---l~---------------e~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
.|||||||+|.||.+|.... ++.+.++ +. +.|....++..+++++||+||+||+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 58999999999999754432 1122222 21 1122233455567899999999997
Q ss_pred -C------c---cHHHHHHhhccccCCCCEEE--EecCCCcHH-HHHhhCCC--C-----CceEEEecCc-----HHhhh
Q psy6714 186 -P------H---IVPVALNDIKPVFNESNLLI--SVAGGVPIK-NMEQALPK--N-----SRIIRAMPNT-----PALVR 240 (303)
Q Consensus 186 -P------~---~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie-~L~~~l~~--~-----~~VVr~mPn~-----p~~v~ 240 (303)
| . .+....+.|.++++++++|| |++..-+.+ .++..+.. + ...+.+-|-. ...--
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 5 2 34444567888888888888 444433333 23332221 1 1223322221 11101
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
.....++.|. +++..+.+..+++.+.
T Consensus 166 ~~~~riv~G~--~~~~~~~~~~ly~~~~ 191 (425)
T PRK15182 166 TNIKKITSGS--TAQIAELIDEVYQQII 191 (425)
T ss_pred cCCCeEEECC--CHHHHHHHHHHHHHHh
Confidence 1223345553 5677788999999885
No 86
>KOG2711|consensus
Probab=98.54 E-value=7.3e-07 Score=85.97 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=83.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-----------HHHHhhCCCCCceEEEe
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-----------KNMEQALPKNSRIIRAM 232 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-----------e~L~~~l~~~~~VVr~m 232 (303)
+.+.+|..+++++|||+|+.||.+.+..++++|..+++++...||+..|+.. +.|.+.++-.+ -+-+.
T Consensus 93 vvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~-~vL~G 171 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPC-SVLMG 171 (372)
T ss_pred eEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCc-eeecC
Confidence 4556788999999999999999999999999999999999999999999984 24555665322 26667
Q ss_pred cCcHHhhhCCc---EEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC--CCCchhhhhh
Q psy6714 233 PNTPALVRQGA---SVFVRGSSASDQDAQTVINLFKSVGTCEEVP--EYLLDGITGL 284 (303)
Q Consensus 233 Pn~p~~v~~G~---til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd--E~~~Da~tAl 284 (303)
||++.++.+.. +.+... .+.+.-..+.+||+.--..+++- -+-+.++-||
T Consensus 172 aNiA~EVa~~~f~e~tIg~~--~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaL 226 (372)
T KOG2711|consen 172 ANIASEVANEKFCETTIGYK--DKKEAGILLKKLFRTPYFRVVVVEDADGVEICGAL 226 (372)
T ss_pred CchHHHHHhccccceeEecc--chhhcchHHHHHhCCCceEEEEeccchHhHHhhhH
Confidence 99999887553 222222 13333346888998877655442 3344444444
No 87
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.54 E-value=1e-06 Score=85.05 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=112.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
+..++|||||+|.||.+ ++..+. +.. +.+.+.|+.+ .+..++++.||+|++++|...-.+++ .+
T Consensus 14 LkgKtVGIIG~GsIG~a-mA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHA-QAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hCcCEEEEEeEcHHHHH-HHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 45688999999999995 443321 111 2334568865 48899999999999999966667887 46
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
+.+.++++.++ ..+-|..+. ..... |++..|+-+-|--|.. -+.|++.++ .-.+.+..+.+........
T Consensus 92 il~~MK~GaiL-~f~hgfni~-~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~ 169 (335)
T PRK13403 92 VEENLREGQML-LFSHGFNIH-FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKG 169 (335)
T ss_pred HHhcCCCCCEE-EECCCccee-cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHH
Confidence 88888888855 488888773 33333 4566777776655531 235665433 3345566788999999999
Q ss_pred cCCc----EEc---CC---CCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 267 VGTC----EEV---PE---YLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 267 iG~~----v~v---dE---~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|.. ++- +| +.|..=+.|+|...+.+-.=+|-|+.
T Consensus 170 iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lve 214 (335)
T PRK13403 170 VGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTE 214 (335)
T ss_pred cCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 9953 222 23 44555567788777777666666553
No 88
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.46 E-value=6e-07 Score=78.64 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
..++|+|||.|..|. .-++.++. ..+++++.|+.+ .+..|+++++|+|++.+|+....++. ++
T Consensus 3 ~~k~IAViGyGsQG~-a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH-AHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp CTSEEEEES-SHHHH-HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCChHHH-HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence 467899999999998 34443321 234667889986 57788999999999999999999998 78
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHHh-----h--hCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPAL-----V--RQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~~-----v--~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
|.+.|+++++++ ..-|..+- ..... +++..++-+.|-.|.. + +.|+..++ ...+.+....+........
T Consensus 81 I~p~l~~G~~L~-fahGfni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala~A~~ 158 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHGFNIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALAYAKA 158 (165)
T ss_dssp HHHHS-TT-EEE-ESSSHHHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHHHHHH
T ss_pred HHhhCCCCCEEE-eCCcchhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHHHHHH
Confidence 999999998654 77777663 22222 3456777777776642 2 35665433 3345566778888888888
Q ss_pred cCC
Q psy6714 267 VGT 269 (303)
Q Consensus 267 iG~ 269 (303)
+|.
T Consensus 159 iG~ 161 (165)
T PF07991_consen 159 IGG 161 (165)
T ss_dssp TTH
T ss_pred hCC
Confidence 773
No 89
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.35 E-value=5.1e-06 Score=81.88 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=75.3
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHHHH---h----------------hCCCeE--ecChHHhhcCCCEEEE
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSKAT---G----------------TMGAKI--TFDNKEVTLNSEVIIL 182 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e~l---~----------------e~Gv~v--~~d~~eav~~ADIVIL 182 (303)
|||+|||+|.||.++. ..+ +.+.+++ . +.+... +.+..+++.+||+||+
T Consensus 1 mkI~VIGlGyvGl~~A-~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNG-LLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHH-HHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 6899999999998643 221 1122211 1 123333 3446678899999999
Q ss_pred eeC-C----------ccHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc------
Q psy6714 183 AVK-P----------HIVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA------ 243 (303)
Q Consensus 183 AVp-P----------~~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~------ 243 (303)
||| | ..+++++++|.. ++++++|| |++..-+.+.+.+.+.. ..+.+- |.-...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~~---PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIFS---PEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEEC---cccccCCccccccc
Confidence 998 4 367788888876 57888877 55555555666665432 123333 32233332
Q ss_pred ---EEEEeCCCCCHHHHHHHHHHHHh--cCC
Q psy6714 244 ---SVFVRGSSASDQDAQTVINLFKS--VGT 269 (303)
Q Consensus 244 ---til~~g~~~~~e~~e~V~~Lfs~--iG~ 269 (303)
.++.++ +++..+.+.++|.. ++.
T Consensus 154 ~p~rvv~G~---~~~~~~~~~~~l~~~~~~~ 181 (388)
T PRK15057 154 HPSRIVIGE---RSERAERFAALLQEGAIKQ 181 (388)
T ss_pred CCCEEEEEc---CcHHHHHHHHHHHhhhhcC
Confidence 344444 34556777777754 554
No 90
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.22 E-value=2.6e-05 Score=82.21 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc-cH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH-IV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~-~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+++. +.+++||+||=||+-+ .+ .+++.++..++++++|+.|-.+++++..|.+.+....+++.+|+-.|...-.
T Consensus 373 i~~~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 373 ITGTTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eEEeCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc
Confidence 3455555 5678999999999733 23 3778888888889999999999999999998876435788888665543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
..=++.+...+++.++.+..++..+|+. +.+.
T Consensus 452 -lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 452 -LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 2224567788999999999999999984 5553
No 91
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=2.1e-05 Score=73.16 Aligned_cols=132 Identities=14% Similarity=0.269 Sum_probs=91.1
Q ss_pred CcEEEEcCChhhHHHHHHH-Hh---------hcH---HHHhhCCCeEecChHHhh---cCCCEEEEeeCCc-cHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIAS-LN---------IVS---KATGTMGAKITFDNKEVT---LNSEVIILAVKPH-IVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a-l~---------r~~---e~l~e~Gv~v~~d~~eav---~~ADIVILAVpP~-~v~~VL~e 195 (303)
|+||.||||.||.. +.+. ++ .+. +.++..|++...+..+.+ ...-+|-|.||.- .+..++++
T Consensus 1 M~iGmiGLGrMG~n-~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGAN-LVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD 79 (300)
T ss_pred CcceeeccchhhHH-HHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH
Confidence 78999999999994 5443 22 222 356677877767766654 3578999999966 78899999
Q ss_pred hccccCCCCEEEEecCCCcHHHHHh---hCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQ---ALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.|.++.+||.-=+.---+.+++ +...+..++.+..+-.+. ...|..+++.+ +++..+.++.+|..+-
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~lA 153 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKALA 153 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhhC
Confidence 9999999999885433222233333 333455666665443322 23577777777 7899999999999874
No 92
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.22 E-value=2.3e-05 Score=82.87 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=80.9
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.+ .+++.++..++++++||.|-.+++++..|.+.+....+++.+|.-.|...-.
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 381 IRPTLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eEEeCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccc
Confidence 3445555 55789999999996 3333 3777888888889999989999999999999886434788888655543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 460 -lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 460 -LVEVIRGEKTSDETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred -eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe
Confidence 2224567788999999999999999984 545
No 93
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.22 E-value=2.1e-05 Score=83.47 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.++ +++.++..++++++|+.|-.+++++..|.+.+..-.+++.+|.-.|...-.
T Consensus 403 i~~~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 403 LTPTLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eEEeCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc
Confidence 3445555 46789999999996 33343 777888888889999999999999999999876434788888665543322
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 482 -LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 513 (737)
T TIGR02441 482 -LLEIITHDGTSKDTLASAVAVGLKQGKVVIVV 513 (737)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2224567788999999999999999985 444
No 94
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.18 E-value=2.9e-05 Score=82.00 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CeEecChHHhhcCCCEEEEeeCC-ccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKP-HIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP-~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+++. +.+++||+||=||+- -.+ .+++.++..++++++|+.|-.+++++..|.+.+....+++.+|.-.|...-.
T Consensus 378 i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 378 ISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred EEEeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc
Confidence 3445555 567899999999962 223 4778888888889999999999999999998876434788888665543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.++..+++..+.+..++..+|+. +.+
T Consensus 457 -lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 457 -LVEVIPHAKTSAETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred -eEEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 2224577888999999999999999984 555
No 95
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.16 E-value=3.3e-05 Score=81.68 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=81.0
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.+ .+++.++..++++++|+-|-.+++++..|...+..-.+++.+|.-.|...-.
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 381 ITPTLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eEEeCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCc
Confidence 3445555 45789999999996 3333 3778888888889999999999999999998776434788888665543221
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 460 -lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 491 (714)
T TIGR02437 460 -LVEVIRGEKSSDETIATVVAYASKMGKTPIVV 491 (714)
T ss_pred -eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 2224567788999999999999999985 544
No 96
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.13 E-value=4.1e-06 Score=74.49 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=32.9
Q ss_pred CCeEecChHHhhcCCCEEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVK-PH---------IVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV 207 (303)
.+..+.+..+++.++|++|+||| |. .+.+++++|.++++++++||
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV 117 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV 117 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE
T ss_pred cchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE
Confidence 35677788888999999999997 32 27788889999898888877
No 97
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.09 E-value=1.2e-05 Score=81.17 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=42.0
Q ss_pred CeEecChHHhhcCCCEEEEeeC-Cc--------------cHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhh
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PH--------------IVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQA 221 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~--------------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~ 221 (303)
+..+++..+++++||++||||+ |. .+.+++++|.++++++++|| |++-+-+.+.+...
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHH
Confidence 4556677778999999999995 43 57788899999998898888 44433334444443
No 98
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.05 E-value=7.7e-05 Score=71.61 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=74.1
Q ss_pred hhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCC
Q psy6714 173 VTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGS 250 (303)
Q Consensus 173 av~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~ 250 (303)
.+++||+||=+|+ ...++ +++.++-.+.+++.|+=|-.+++++..|.+.+..-.+++.+|+--|..+-. ..=++.+.
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~-LVEvI~g~ 157 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP-LVEVIRGE 157 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce-eEEEecCC
Confidence 6889999999996 44444 677888878888888888889999999998875334688887544432211 12235677
Q ss_pred CCCHHHHHHHHHHHHhcCCcE
Q psy6714 251 SASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 251 ~~~~e~~e~V~~Lfs~iG~~v 271 (303)
..+++.++.+.++...+|+..
T Consensus 158 ~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 158 KTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 888999999999999999863
No 99
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.03 E-value=9.3e-06 Score=78.33 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHH-hh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH--Hh
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASL-NI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL--ND 195 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al-~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL--~e 195 (303)
.+..|+|||||+|.||. .++..+ +. ........++....+..+++++||+|++++|.......+ .+
T Consensus 143 ~l~g~~VgIIG~G~IG~-~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~ 221 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGL-AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNAD 221 (332)
T ss_pred eeCCCEEEEECCCHHHH-HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHH
Confidence 35678999999999999 455443 21 111111223444457888999999999999865544444 34
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~ 223 (303)
+...++++.+||.+.-|... +.|.+.+.
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 45567889999988866554 45555554
No 100
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.02 E-value=1.8e-05 Score=73.89 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH---H-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA---T-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~---l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||||+|.||. .++..+.. ..++ + ...|.....+..+++.++|+|++|++++.+.+++.
T Consensus 1 mmrIgIIG~G~iG~-~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIAS-LITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHH-HHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHH
Confidence 58999999999998 45443221 1122 2 24567777888888889999999999999998887
Q ss_pred hhcc
Q psy6714 195 DIKP 198 (303)
Q Consensus 195 eI~~ 198 (303)
++..
T Consensus 80 ~al~ 83 (265)
T PRK13304 80 KSLE 83 (265)
T ss_pred HHHH
Confidence 7654
No 101
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.99 E-value=4.4e-05 Score=76.73 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=97.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHH-----------Hhh--------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIAS-----------LNI--------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~a-----------l~r--------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
+..++|+|||+|.+|. ..+.. +++ ..+++.+.|+.+ .+..|+++.||+|++.+|...-.
T Consensus 34 LkgKtIaIIGyGSqG~-AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL-NQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred hCCCEEEEEccCHHHH-HHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHHHH
Confidence 4568999999999999 33322 111 122444568866 67889999999999999988766
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH-----hh--hCCcEEEE-eC--CCCCHHHHHHH
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA-----LV--RQGASVFV-RG--SSASDQDAQTV 260 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~-----~v--~~G~til~-~g--~~~~~e~~e~V 260 (303)
.+.+++.+.++++.++ ..+-|..+....-..+++..|+-+-|--|. .+ +.|++.++ .- .+.+....+.+
T Consensus 112 ~v~~~i~p~LK~Ga~L-~fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~a 190 (487)
T PRK05225 112 DVVRAVQPLMKQGAAL-GYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIA 190 (487)
T ss_pred HHHHHHHhhCCCCCEE-EecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHH
Confidence 7778899999998864 577788765443344666778877766553 12 35665433 32 35667788999
Q ss_pred HHHHHhcCCc
Q psy6714 261 INLFKSVGTC 270 (303)
Q Consensus 261 ~~Lfs~iG~~ 270 (303)
......+|..
T Consensus 191 la~a~~iG~~ 200 (487)
T PRK05225 191 KAWAAATGGH 200 (487)
T ss_pred HHHHHHhCCC
Confidence 9999999854
No 102
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.94 E-value=0.00014 Score=69.66 Aligned_cols=168 Identities=19% Similarity=0.207 Sum_probs=111.4
Q ss_pred cCCCcEEEEcCChhhHHH-HHHH---------Hhh---cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-h
Q psy6714 130 WNRSDKQIAGTTERGPGA-LIAS---------LNI---VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-D 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~-La~a---------l~r---~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-e 195 (303)
++.+||+|||.|.=|.+- +-+. ++. .-+++.+.|+.+ .+..|+++++|+|++-+|+..-.+|.+ +
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~ 94 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKE 94 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence 356799999999999831 2111 111 124566889986 678899999999999999999999997 8
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~i 267 (303)
|.|.|+.++. +..+-|..+..-.-..|++..|+-+-|--|.. -+.|++.++ .-.+.+....+........+
T Consensus 95 I~p~Lk~G~a-L~FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~Akgi 173 (338)
T COG0059 95 IAPNLKEGAA-LGFAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGI 173 (338)
T ss_pred hhhhhcCCce-EEeccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhc
Confidence 9999999884 56888887743222334566777776665542 135665444 33455677889999999999
Q ss_pred CC----cEE---cCC---CCchhhhhhccchHHHHHHHHHhh
Q psy6714 268 GT----CEE---VPE---YLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 268 G~----~v~---vdE---~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
|. +++ ..| +.|-.-+.|+|..-+.+-.=+|-|
T Consensus 174 Gg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetL 215 (338)
T COG0059 174 GGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETL 215 (338)
T ss_pred CCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 93 222 223 345555566654444443333333
No 103
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.93 E-value=2.3e-05 Score=75.69 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~eI~ 197 (303)
+..|+|||||+|.||. .++..+. +..+.... .+....+..+++++||+|++++|... ...++ +++.
T Consensus 144 l~g~~VgIIG~G~IG~-~vA~~L~~~G~~V~~~d~~~~~~~~-~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 144 VKNMTVAIIGTGRIGA-ATAKIYAGFGATITAYDAYPNKDLD-FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEEeCChhHhhh-hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence 5678999999999999 4554432 11111111 12234577889999999999998543 44444 5566
Q ss_pred cccCCCCEEEEecCCCc--HHHHHhhCCC
Q psy6714 198 PVFNESNLLISVAGGVP--IKNMEQALPK 224 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~--ie~L~~~l~~ 224 (303)
..++++.++|.+.-|.- .+.|.+.|.+
T Consensus 222 ~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 222 DHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred hcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 67889999998886654 4567666653
No 104
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.88 E-value=6.8e-05 Score=75.61 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCeEecChHHhhcC---CCEEEEeeC-CccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhCC-CCCceEEE-ecC
Q psy6714 163 GAKITFDNKEVTLN---SEVIILAVK-PHIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQALP-KNSRIIRA-MPN 234 (303)
Q Consensus 163 Gv~v~~d~~eav~~---ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l~-~~~~VVr~-mPn 234 (303)
|+....+++++++. +|+||+||| ...+++|+.++.+++.++.+||...+....+ .+.+.+. .+..++.+ +..
T Consensus 38 g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSG 117 (459)
T PRK09287 38 KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSG 117 (459)
T ss_pred CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCC
Confidence 47788899998874 899999998 6688999999999998999999665433322 3333332 22333332 112
Q ss_pred cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 235 TPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 235 ~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.....|.++++.| +++..+.++.+|+.+|..
T Consensus 118 G~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 118 GEEGALHGPSIMPGG---QKEAYELVAPILEKIAAK 150 (459)
T ss_pred CHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhh
Confidence 222334566676666 788999999999999964
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=97.83 E-value=5.4e-05 Score=74.72 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=65.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN- 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~- 194 (303)
+..|+|||||+|.||.. ++..+ ++.. +...+.|+....+..++++.||+|++++| ......++.
T Consensus 190 L~gktVGIvG~G~IG~~-vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 268 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLA-VLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA 268 (385)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH
Confidence 55789999999999994 55432 2221 22335577656788999999999999998 555677763
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
++...++++.++|.+.=|- +.+.|.+.|.
T Consensus 269 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 269 DVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 4555688999999876443 3456666654
No 106
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.83 E-value=5.1e-05 Score=73.29 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHH--HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSK--ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e--~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
.+..++|||||+|.||. .++..++ +... .....|+.. .+..+++++||+|++++| ......++ .
T Consensus 147 ~L~gktvgIiG~G~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQ-AVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred CCCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 35678999999999999 5665432 2111 122445543 578889999999999998 44456665 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.++|.+.-| ++.+.|.+.|.+
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 455567889999977644 344667776654
No 107
>PLN03139 formate dehydrogenase; Provisional
Probab=97.76 E-value=7.8e-05 Score=73.65 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=66.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhc---HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIV---SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
+..++|||||+|.||.. ++..+ ++. .+...+.|+....+..+++.+||+|++++| ......++ +
T Consensus 197 L~gktVGIVG~G~IG~~-vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRL-LLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred CCCCEEEEEeecHHHHH-HHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 55789999999999994 55432 221 122345677665688999999999999998 56677776 3
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
++...++++.++|.+.=|- +.+.|.+.|.+
T Consensus 276 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred HHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 4556688999999876443 34567666653
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.75 E-value=0.00019 Score=66.39 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=68.8
Q ss_pred hcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhh-hCC------cEE
Q psy6714 174 TLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALV-RQG------ASV 245 (303)
Q Consensus 174 v~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v-~~G------~ti 245 (303)
+..+|+||+|||..++.++++.+++++.++++||++.+|+.. +.+.+.++. ..++..+..+.+.. +.| ...
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~ 135 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGA 135 (293)
T ss_pred cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEecccc
Confidence 568999999999999999999999999888999999999975 557777764 24544443332211 111 111
Q ss_pred EEeCC-CCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 246 FVRGS-SASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 246 l~~g~-~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
+..|. +...+..+.+.++|+..|..+.+.++
T Consensus 136 ~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~d 167 (293)
T TIGR00745 136 TKIGDYVGENEAVEALAELLNEAGIPAELHGD 167 (293)
T ss_pred EEEecCCCchHHHHHHHHHHHhCCCCCEecch
Confidence 22222 11225567888899998976655543
No 109
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.68 E-value=0.0011 Score=62.44 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEec
Q psy6714 158 ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMP 233 (303)
Q Consensus 158 ~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mP 233 (303)
+..+.|+++++|..++++.++|.+|-+|-- ..-.+.++|.+++..|.+|..++.--+. ..|+..|.-...-|.+++
T Consensus 64 ~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvss 143 (340)
T COG4007 64 RVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSS 143 (340)
T ss_pred HHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccc
Confidence 345789999999999999999999999955 7788889999999888876655432222 234444432223345555
Q ss_pred CcHHhh----hCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCCc-EEcCCCCc
Q psy6714 234 NTPALV----RQGASVFVRG-----SSASDQDAQTVINLFKSVGTC-EEVPEYLL 278 (303)
Q Consensus 234 n~p~~v----~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~~-v~vdE~~~ 278 (303)
.||..+ .++..++..- +-.++++.+...+|.+++|+. +.++.+..
T Consensus 144 mHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~ 198 (340)
T COG4007 144 MHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV 198 (340)
T ss_pred cCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence 555433 4555554411 223688999999999999986 45564433
No 110
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00027 Score=69.83 Aligned_cols=133 Identities=14% Similarity=0.223 Sum_probs=85.4
Q ss_pred CCcEEEEcCChhhHHHHHHH----------HhhcHHH----HhhC----CCeEecChHHh---hcCCCEEEEeeCC-ccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS----------LNIVSKA----TGTM----GAKITFDNKEV---TLNSEVIILAVKP-HIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a----------l~r~~e~----l~e~----Gv~v~~d~~ea---v~~ADIVILAVpP-~~v 189 (303)
.+.||+||||.||. -|++- +|++.++ +++. .+..+.+.+|. ++..--|+|.|+. ..+
T Consensus 3 ~~~iGviGLaVMG~-NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 3 KADIGVIGLAVMGS-NLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred ccceeeEehhhhhH-HHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 45799999999999 57654 3444432 2322 23445566554 5678999999986 668
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcHHHH---HhhCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPIKNM---EQALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~ie~L---~~~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
..++++|+|+|.++.|||.-=+..=.+++ +++...+..+|.+.-+-..+ ...|.+++..| +++..+.|..+|+
T Consensus 82 D~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG---~~eay~~v~pil~ 158 (473)
T COG0362 82 DAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGG---QKEAYELVAPILT 158 (473)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCC---CHHHHHHHHHHHH
Confidence 89999999999999999854333322333 33334344555542111111 11355555554 7899999999999
Q ss_pred hcC
Q psy6714 266 SVG 268 (303)
Q Consensus 266 ~iG 268 (303)
.+.
T Consensus 159 ~Ia 161 (473)
T COG0362 159 KIA 161 (473)
T ss_pred HHH
Confidence 985
No 111
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.59 E-value=0.00013 Score=74.67 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=65.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------h--cHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------I--VSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r--~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ + ..+...+.|+....+..+++++||+|++++| ......++ .+
T Consensus 136 l~gktvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGS-IVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHH
Confidence 4568999999999999 4554422 2 1233456677665688999999999999998 44556665 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+.=| ++.+.|.+.|..
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 44467789999977643 344567666653
No 112
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.0018 Score=64.04 Aligned_cols=108 Identities=19% Similarity=0.328 Sum_probs=61.9
Q ss_pred CeEecChHHhhcCCCEEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCCCC--ceE
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PH---------IVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPKNS--RII 229 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~~~--~VV 229 (303)
+..++|..++++++|++||||+ |+ .++.++++|.++++..++|| |++--=+.+.+++.+.... +-+
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f 143 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDF 143 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCc
Confidence 5678889999999999999995 33 36678888988886656666 5543223445554332111 111
Q ss_pred EEecCcHHhhhCCcE--------EEEeCCCCCHHHHHHHHHHHHhc---CCcEEc
Q psy6714 230 RAMPNTPALVRQGAS--------VFVRGSSASDQDAQTVINLFKSV---GTCEEV 273 (303)
Q Consensus 230 r~mPn~p~~v~~G~t--------il~~g~~~~~e~~e~V~~Lfs~i---G~~v~v 273 (303)
.+.-| |.=.++|.. -++.|.. ++...+.+.+|+..+ ..++.+
T Consensus 144 ~v~~N-PEFLREG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~ 196 (414)
T COG1004 144 EVASN-PEFLREGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILF 196 (414)
T ss_pred eEecC-hHHhcCcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEE
Confidence 22223 322223321 1233322 334677888888775 555444
No 113
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.54 E-value=0.00016 Score=74.00 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=65.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hh--cHHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NI--VSKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r--~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..+ ++ ..+...+.|+... +..+++++||+|++++|. .....++ .+
T Consensus 138 l~gktvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~ 215 (526)
T PRK13581 138 LYGKTLGIIGLGRIGS-EVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAE 215 (526)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHH
Confidence 4578999999999999 455442 22 1233446677654 788999999999999984 4566666 34
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+.=| ++.+.|.+.|..
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 55567789999977643 344567666653
No 114
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.53 E-value=0.0015 Score=62.66 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=77.9
Q ss_pred hHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEE
Q psy6714 170 NKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247 (303)
Q Consensus 170 ~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~ 247 (303)
..+++++||+||.||+ ...++ .++.++...+++++||.|..+++.+..|.+.+....+++.+|.-.|...- ...=++
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~-~lvEVv 151 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM-PLVEVS 151 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccC-ceEEEe
Confidence 5678899999999997 44455 45577877888999999999999999999877533467777654443211 122245
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCc-EEcCC
Q psy6714 248 RGSSASDQDAQTVINLFKSVGTC-EEVPE 275 (303)
Q Consensus 248 ~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE 275 (303)
.+...+++.++.+..+|..+|+. +.+.+
T Consensus 152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v~d 180 (314)
T PRK08269 152 PSDATDPAVVDRLAALLERIGKVPVVCGP 180 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 66788999999999999999975 55543
No 115
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.52 E-value=0.00015 Score=69.31 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=60.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH-------HHHhhCCCeE-ecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS-------KATGTMGAKI-TFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~-------e~l~e~Gv~v-~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~~ 199 (303)
+..++|||||+|.||.. ++..++... ....+.|+.. ..+..+++++||+|++++| ......++ .+....
T Consensus 120 L~gktvgIiG~G~IG~~-vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~ 198 (303)
T PRK06436 120 LYNKSLGILGYGGIGRR-VALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSL 198 (303)
T ss_pred CCCCEEEEECcCHHHHH-HHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhc
Confidence 45789999999999994 554322110 0111234322 4577889999999999998 44455555 234445
Q ss_pred cCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 200 FNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 200 L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++.++|.+.=| ++.+.|.+.+..
T Consensus 199 mk~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 199 FRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7789999976633 445667766653
No 116
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.50 E-value=0.00033 Score=67.19 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH------HHH-h-hCCCeE---ecChHHhhcCCCEEEEeeC-CccHHHHHH-hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS------KAT-G-TMGAKI---TFDNKEVTLNSEVIILAVK-PHIVPVALN-DI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~------e~l-~-e~Gv~v---~~d~~eav~~ADIVILAVp-P~~v~~VL~-eI 196 (303)
+..++|||||+|.||.. ++..++..- ... . ..++.. ..+..+++++||+|++++| ......++. +.
T Consensus 134 l~g~tvgIvG~G~IG~~-vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 134 REDFTIGILGAGVLGSK-VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 34679999999999994 554322110 000 0 012221 2356788999999999998 455666663 35
Q ss_pred ccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
...++++.++|.+.=|- +.+.|.+.|..
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence 55678899999877443 44567776654
No 117
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.49 E-value=0.00017 Score=63.24 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..++ +... .....++. ..+..++++.||+|++++|- .....++ +
T Consensus 34 l~g~tvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGR-AVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp STTSEEEEESTSHHHH-HHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBSH
T ss_pred cCCCEEEEEEEcCCcC-eEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeeee
Confidence 3467899999999999 5665432 2222 13455664 46888999999999999983 2233333 2
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
+....++++.++|.+.=|- +.+.|.+.+.+
T Consensus 112 ~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp HHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 2333466888999887443 44567776653
No 118
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.46 E-value=0.00038 Score=66.67 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhh
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDI 196 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI 196 (303)
.+..+++||||+|.||. .++..++ +.. .....++. ..+..+++++||+|++++| -.....++ ++.
T Consensus 142 ~L~gktvGIiG~G~IG~-~vA~~~~~fgm~V~~~d~~~-~~~~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~ 218 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGK-RVAKIAQAFGAKVVYYSTSG-KNKNEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKE 218 (311)
T ss_pred ccCCCEEEEECCCHHHH-HHHHHHhhcCCEEEEECCCc-cccccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHH
Confidence 45678999999999999 4554322 111 01122333 2467899999999999998 44455555 233
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
...++++.++|.+.=| |+.+.|.+.|..
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 3457789999988743 345677777754
No 119
>PLN02928 oxidoreductase family protein
Probab=97.46 E-value=0.00035 Score=67.99 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHH--HHhh-------------CCCeEecChHHhhcCCCEEEEee
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSK--ATGT-------------MGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e--~l~e-------------~Gv~v~~d~~eav~~ADIVILAV 184 (303)
+..++|||||+|.||.. ++..+ ++... .... .+. ...+..+++.+||+|++++
T Consensus 157 l~gktvGIiG~G~IG~~-vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 157 LFGKTVFILGYGAIGIE-LAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCCEEEEECCCHHHHH-HHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECC
Confidence 55789999999999994 44432 22110 1100 011 2346788999999999999
Q ss_pred C-CccHHHHH-HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 185 K-PHIVPVAL-NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 185 p-P~~v~~VL-~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
| ......++ ++....++++.++|.+.=| |+.+.|.+.|..
T Consensus 235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 235 TLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 8 33344454 2344457789999987633 345667776654
No 120
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0017 Score=64.40 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=55.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH--------------------hhc--------HH----HHhhCC-CeEecChHHhhcCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL--------------------NIV--------SK----ATGTMG-AKITFDNKEVTLNSE 178 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--------------------~r~--------~e----~l~e~G-v~v~~d~~eav~~AD 178 (303)
.++|||||||-||-+ ++..+ ++- .+ ...+.| ++.++|..++ +.||
T Consensus 9 ~~~I~ViGLGYVGLP-lA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~d 86 (436)
T COG0677 9 SATIGVIGLGYVGLP-LAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECD 86 (436)
T ss_pred ceEEEEEccccccHH-HHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCC
Confidence 489999999999975 33221 100 01 122344 5677777764 4899
Q ss_pred EEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE--EecCCCcHHH
Q psy6714 179 VIILAVK-PH---------IVPVALNDIKPVFNESNLLI--SVAGGVPIKN 217 (303)
Q Consensus 179 IVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~ 217 (303)
++|+||| |- .+++..+.|+++|++|.+|| |++-.=+.+.
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~ 137 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEE 137 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH
Confidence 9999997 31 25677788999999999988 6554333443
No 121
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.45 E-value=0.00012 Score=61.63 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcHHH---H-hhCCC----eEecChHHhhcCCCEEEEeeCCccH--H
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVSKA---T-GTMGA----KITFDNKEVTLNSEVIILAVKPHIV--P 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~e~---l-~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v--~ 190 (303)
.++|+|||+|.||.. ++..+. +..++ + .+.+. ....+..++++++|+||+|+|+... .
T Consensus 19 ~~~i~iiG~G~~g~~-~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~ 97 (155)
T cd01065 19 GKKVLILGAGGAARA-VAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGD 97 (155)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCC
Confidence 578999999999994 444321 11222 1 23332 1345666778999999999997764 2
Q ss_pred HHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.+... ...++++++|+.+. .++. ..+.+.+.. .-+++++.+++.+.++
T Consensus 98 ~~~~~-~~~~~~~~~v~D~~-~~~~~~~l~~~~~~--~g~~~v~g~~~~~~q~ 146 (155)
T cd01065 98 ELPLP-PSLLKPGGVVYDVV-YNPLETPLLKEARA--LGAKTIDGLEMLVYQA 146 (155)
T ss_pred CCCCC-HHHcCCCCEEEEcC-cCCCCCHHHHHHHH--CCCceeCCHHHHHHHH
Confidence 22111 12245777777442 2222 134333321 1246677777665544
No 122
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.44 E-value=0.00067 Score=54.57 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=55.6
Q ss_pred CcEEEEcCChhhHHHHHHHHh-------------hcHH---H-HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN-------------IVSK---A-TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-------------r~~e---~-l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL 193 (303)
|||||||+|.+|.. ....+. ...+ . .+.+|+...+|..++++ +.|+|++|+|+..-.+++
T Consensus 1 i~v~iiG~G~~g~~-~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGAGSIGRR-HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEESTSHHHHH-HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECCcHHHHH-HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 58999999999983 332221 1112 2 34678998889998887 799999999988877777
Q ss_pred HhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 194 NDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
..... .|.-|+.-- -+.+.+.++++
T Consensus 80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 80 KKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 66543 344444221 23355555443
No 123
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.42 E-value=0.00036 Score=68.84 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=58.1
Q ss_pred cccCCCcEEEEcCChhhHHHHHHHHhhcH------HH-HhhCCC-eEecChHHhhcCCCEEEEeeCCcc-----HHHHH-
Q psy6714 128 ARWNRSDKQIAGTTERGPGALIASLNIVS------KA-TGTMGA-KITFDNKEVTLNSEVIILAVKPHI-----VPVAL- 193 (303)
Q Consensus 128 ~~~~~mkIgIIGlG~MG~~~La~al~r~~------e~-l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~-----v~~VL- 193 (303)
+.+..++|||||+|+||. .++..++..- .. ..+.+. ....+..+++++||||++.+|-.. ...++
T Consensus 112 ~~L~gktvGIIG~G~IG~-~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGR-RLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCcCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 346688999999999999 4554322110 00 011111 123567889999999999998322 33333
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++....++++.++|.+.=| |+.+.|.+.+.
T Consensus 191 ~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 191 EKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred HHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 2334457789999988733 34556766664
No 124
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.42 E-value=0.0003 Score=58.47 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=54.5
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcH-----------H---------HH---hhCCCeEecChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVS-----------K---------AT---GTMGAKITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~-----------e---------~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|+|+ |.||. +++..+.... . .+ ...|+.+..+.+++++.+|+||-.+.|+.
T Consensus 1 mrV~i~G~~GrMG~-~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGR-AIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDA 79 (124)
T ss_dssp EEEEEETTTSHHHH-HHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHH
T ss_pred CEEEEECCCCHHHH-HHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHH
Confidence 78999999 99999 5665533211 0 11 14567788889999989999999999988
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKNM 218 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L 218 (303)
+.+.++.... .+.-+|+-..|.+.+++
T Consensus 80 ~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 80 VYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp HHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred hHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 8888876544 35566666778876543
No 125
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.41 E-value=0.00045 Score=64.95 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH----HhhCCC-eEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA----TGTMGA-KITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~----l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+|||||||+|.||. .++..+.. ..++ ..++|. ....+.++++.++|+|++|+++....++.
T Consensus 6 ~irIGIIG~G~IG~-~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGK-AIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIV 84 (271)
T ss_pred eeEEEEECccHHHH-HHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHHH
Confidence 48999999999998 45543321 1222 224454 45678888889999999999998888887
Q ss_pred Hhhc
Q psy6714 194 NDIK 197 (303)
Q Consensus 194 ~eI~ 197 (303)
..+.
T Consensus 85 ~~aL 88 (271)
T PRK13302 85 EPVL 88 (271)
T ss_pred HHHH
Confidence 6654
No 126
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.39 E-value=0.00048 Score=66.12 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH------HH--HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS------KA--TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~------e~--l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~~ 199 (303)
+..+++||||+|.||. .++..++-.. +. ....... ..+..+++.+||+|++++| ......++ ++....
T Consensus 145 l~gktvgIiG~G~IG~-~va~~l~~fg~~V~~~~~~~~~~~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~ 222 (314)
T PRK06932 145 VRGSTLGVFGKGCLGT-EVGRLAQALGMKVLYAEHKGASVCREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLAL 222 (314)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHhcCCCEEEEECCCcccccccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHh
Confidence 5578999999999999 4554322110 00 0000111 2367889999999999998 44455555 233445
Q ss_pred cCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 200 FNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 200 L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++.++|.+.=| |+.+.|.+.|.+
T Consensus 223 mk~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 223 MKPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7789999988733 345667776653
No 127
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.33 E-value=0.0005 Score=67.86 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhhcH--------HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-----cHHHHH-H
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNIVS--------KATGTMGAKITFDNKEVTLNSEVIILAVKPH-----IVPVAL-N 194 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r~~--------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-----~v~~VL-~ 194 (303)
.+..++|||||+|+||. .++..+...- ......+.....+..+++++||+|++++|-. ....++ +
T Consensus 113 ~l~gktvGIIG~G~IG~-~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 113 DLAERTYGVVGAGHVGG-RLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred CcCcCEEEEECCCHHHH-HHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH
Confidence 35678999999999999 4554422110 0000111122346788899999999999843 234444 2
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
+....++++.++|.+.=|- +.+.|.+.+.
T Consensus 192 ~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 192 AFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred HHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 3444577899999877443 3456666554
No 128
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.30 E-value=0.0021 Score=62.35 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHhhcH--------------HHHhh-CC-Ce-----EecChH-HhhcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLNIVS--------------KATGT-MG-AK-----ITFDNK-EVTLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~r~~--------------e~l~e-~G-v~-----v~~d~~-eav~~ADIVILAVpP~ 187 (303)
+||||+|||. |.+|. .++..+.... +.+.+ .+ +. ...+.. ...+++|+||+|+|..
T Consensus 1 ~m~kVaIiGAtG~vG~-~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGG-ELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHH-HHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 4789999995 99998 4554432111 01111 11 11 112222 2456899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCC-------CCceEEEecCcHH-hhhCCcEEEEeCCCCCHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPK-------NSRIIRAMPNTPA-LVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-------~~~VVr~mPn~p~-~v~~G~til~~g~~~~~e~ 256 (303)
...+++..+.. .|+.||+..+..-. +...++.+. ...++..+|.... .+..+ .+ +..+++....
T Consensus 80 ~~~~~v~~a~~---aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~-~i-IanPgC~~t~ 154 (343)
T PRK00436 80 VSMDLAPQLLE---AGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGA-RL-IANPGCYPTA 154 (343)
T ss_pred HHHHHHHHHHh---CCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCC-CE-EECCCCHHHH
Confidence 88888877643 57889988877654 233344321 1136677777643 23333 23 3334444444
Q ss_pred H-HHHHHHHHhcCCcEEcCCCCchhhhhhccchH
Q psy6714 257 A-QTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 257 ~-e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgP 289 (303)
. -.+..|.+.-+.. -..-..+...++||.|-
T Consensus 155 ~~l~L~PL~~~~~i~--~~~i~v~~~~g~SGaG~ 186 (343)
T PRK00436 155 SLLALAPLLKAGLID--PDSIIIDAKSGVSGAGR 186 (343)
T ss_pred HHHHHHHHHHcCCCC--CCCEEEEEEEecccCCC
Confidence 3 3456665532222 11334555666666663
No 129
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.27 E-value=0.0016 Score=61.75 Aligned_cols=125 Identities=13% Similarity=0.292 Sum_probs=84.7
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC----CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP----KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~----~~~~VVr~mPn~ 235 (303)
+.|+++++|..|+++++|++|+=+|--. -.++++.+.++++.|.+|-+++ -++.-.|...|. .+..|..+||..
T Consensus 126 daGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tC-TIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 126 DLGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHAC-TIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred HcCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccc-cCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 5689999999999999999999998554 5788899999998888765543 455544544442 344566666532
Q ss_pred -HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchH
Q psy6714 236 -PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 236 -p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgP 289 (303)
|.. .|...+.- .-.++++.+.+.+|.++.|+ .+.++.+....+..+++..-
T Consensus 205 VPgt--~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VT 257 (342)
T PRK00961 205 VPEM--KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVT 257 (342)
T ss_pred CCCC--CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHH
Confidence 222 23332222 34589999999999999997 56677665555544444333
No 130
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.24 E-value=0.00088 Score=64.60 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=62.4
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh-----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN-----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL- 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~-----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL- 193 (303)
.+..+++||||+|.||. .++..++ +. .+.....|+.. .+..+++++||+|++++| ......++
T Consensus 142 ~L~gktvGIiG~G~IG~-~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~ 219 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGM-ALAQRAHFGFNMPILYNARRHHKEAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG 219 (323)
T ss_pred CCCCCEEEEEcccHHHH-HHHHHHHhcCCCEEEEECCCCchhhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC
Confidence 35678999999999999 4554322 11 11123445554 478899999999999998 44455555
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.+....++++.++|.+.=| |+.+.|.+.|..
T Consensus 220 ~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 220 AEQFAKMKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 2344457789999987733 344667776653
No 131
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.21 E-value=0.0011 Score=61.74 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=54.8
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH------------HHH---hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS------------KAT---GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~------------e~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+|||+|||+ |.||. .++..+.... +.. ...|+....+..++++++|+||.+++|....+++..
T Consensus 1 ~mkV~IiG~~G~mG~-~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGR-ELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHHH
Confidence 589999998 99999 4554432211 111 123455567777778889999999999988888766
Q ss_pred hccccCCCCEEEEecCCCcHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
... .++-||.-..|.+.+.+++
T Consensus 80 al~---~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 80 ALE---HGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHH---cCCCEEEECCCCCHHHHHH
Confidence 543 3443343345777655443
No 132
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00088 Score=64.78 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=63.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhc-H-HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-h
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIV-S-KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN-D 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~-~-e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~-e 195 (303)
+..+++||||+|.||. .++..+ +.. . +.....|+....+..+++.+||+|++.+| -.....++. +
T Consensus 140 l~gkTvGIiG~G~IG~-~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 140 LAGKTVGIIGLGRIGR-AVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred ccCCEEEEECCCHHHH-HHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence 3467999999999999 455432 221 1 12223455555778999999999999998 555666662 2
Q ss_pred hccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
....++++.++|.+.=|- +.+.|.+.+..
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHc
Confidence 333577889999887443 44567776654
No 133
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.20 E-value=0.00094 Score=64.34 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHH-H----hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKA-T----GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESN 204 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~-l----~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~ 204 (303)
+++||+||| +|..|. .|...+...++- + .+.+... .+..+.++++|+||+|+|.....+++.++.. .++
T Consensus 1 ~~~~VaIvGAtGy~G~-eLlrlL~~hp~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~---~g~ 75 (313)
T PRK11863 1 MKPKVFIDGEAGTTGL-QIRERLAGRSDIELLSIPEAKRKDA-AARRELLNAADVAILCLPDDAAREAVALIDN---PAT 75 (313)
T ss_pred CCcEEEEECCCCHHHH-HHHHHHhcCCCeEEEEEecCCCCcc-cCchhhhcCCCEEEECCCHHHHHHHHHHHHh---CCC
Confidence 468999999 899998 576665544320 0 1111111 2334456789999999999888888877643 577
Q ss_pred EEEEecCCCcHHHHHhhCCCCCceEEEecCcHH----hhhCCcEEEEeCCCCCHHH-HHHHHHHHHhcCCcEEcCCCCch
Q psy6714 205 LLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA----LVRQGASVFVRGSSASDQD-AQTVINLFKSVGTCEEVPEYLLD 279 (303)
Q Consensus 205 IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~----~v~~G~til~~g~~~~~e~-~e~V~~Lfs~iG~~v~vdE~~~D 279 (303)
.||++.+..-.+ ..++..+|.+.. .+... .++. .+.+.... .-.+..|++. |..-..-.-.+|
T Consensus 76 ~VIDlSadfRl~---------~~~~yglPEvn~~~~~~i~~~-~~Ia-nPgC~~Ta~~laL~PL~~~-~li~~~~~i~i~ 143 (313)
T PRK11863 76 RVIDASTAHRTA---------PGWVYGFPELAPGQRERIAAA-KRVA-NPGCYPTGAIALLRPLVDA-GLLPADYPVSIN 143 (313)
T ss_pred EEEECChhhhcC---------CCCeEEcCccCHHHHHHhhcC-CeEE-cCCcHHHHHHHHHHHHHHc-CCcccCceEEEE
Confidence 888776533211 146777777632 12222 2222 23334333 3345666653 432111123466
Q ss_pred hhhhhccchHH
Q psy6714 280 GITGLSGSGPA 290 (303)
Q Consensus 280 a~tAlsGsgPA 290 (303)
..+++||.|-.
T Consensus 144 a~SG~SGAG~~ 154 (313)
T PRK11863 144 AVSGYSGGGKA 154 (313)
T ss_pred EccccccCCcc
Confidence 77777776643
No 134
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.17 E-value=0.00065 Score=55.85 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=48.9
Q ss_pred cEEEEc-CChhhHHHHHHHHhhcH---------------HHHhh-----CCC---eEecChHHhhcCCCEEEEeeCCccH
Q psy6714 134 DKQIAG-TTERGPGALIASLNIVS---------------KATGT-----MGA---KITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r~~---------------e~l~e-----~Gv---~v~~d~~eav~~ADIVILAVpP~~v 189 (303)
||+||| +|.+|.. |...+.... ..+.. .+. .+.....+.+.++|+||+|++....
T Consensus 1 rV~IvGAtG~vG~~-l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRE-LLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS 79 (121)
T ss_dssp EEEEESTTSHHHHH-HHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH
T ss_pred CEEEECCCCHHHHH-HHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH
Confidence 699999 9999994 554432211 01111 112 2333344556899999999999988
Q ss_pred HHHHHhhccccCCCCEEEEecCCC
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++...+. ..+..||+..+..
T Consensus 80 ~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHH---HTTSEEEESSSTT
T ss_pred HHHHHHHh---hCCcEEEeCCHHH
Confidence 88887763 3677888876644
No 135
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.15 E-value=0.00088 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE-------------ecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI-------------TFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v-------------~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..+ +.+|.++ ..+..+++++||+|++++| -.....++ +
T Consensus 146 l~gktvgIiG~G~IG~-~vA~~l-------~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 146 LEGKTLGLLGHGELGG-AVARLA-------EAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred cCCCEEEEECCCHHHH-HHHHHH-------hhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence 4578999999999999 455432 2222221 2356889999999999998 34455555 2
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.++|.+.=| |+.+.|.+.|.+
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 334457789999988733 344567776653
No 136
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0013 Score=63.08 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=46.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+|||.| .||.+|..+. .+.|+++ + .++.+++++||+||+||. +..+..+. ++
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L--------~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~------ik 222 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALL--------LQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADW------LK 222 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHH--------HHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhh------cc
Confidence 346789999996 9999743322 2334432 2 357888999999999995 66555543 56
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 223 ~GaiVIDv 230 (301)
T PRK14194 223 PGAVVIDV 230 (301)
T ss_pred CCcEEEEe
Confidence 88888865
No 137
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.12 E-value=0.0012 Score=61.83 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH--------------HHHh---hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS--------------KATG---TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~--------------e~l~---e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||||+|.||. .++..+.... +... ..++.++.|..++..+.|+|+.|+++....++..
T Consensus 1 m~rVgIiG~G~iG~-~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGA-AVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHH-HHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHHH
Confidence 68999999999999 4555432211 1111 1256667777766456999999999888877776
Q ss_pred hhc
Q psy6714 195 DIK 197 (303)
Q Consensus 195 eI~ 197 (303)
.+.
T Consensus 80 ~aL 82 (265)
T PRK13303 80 PIL 82 (265)
T ss_pred HHH
Confidence 654
No 138
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.11 E-value=0.0011 Score=65.86 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=61.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc---------HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhcc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV---------SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIKP 198 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~---------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~~ 198 (303)
+..++|||||+|.||. .++..++.. .......++....+..+++++||+|++++|- .....++ ++...
T Consensus 149 L~gktvGIiG~G~IG~-~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 149 VRGKTLGIVGYGHIGT-QLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHh
Confidence 5578999999999999 455442211 0111112344445789999999999999984 4455555 23444
Q ss_pred ccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++++.++|.+.=| ++.+.|.+.|..
T Consensus 228 ~mk~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 228 LMKPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred cCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence 57789999987733 345667666653
No 139
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.08 E-value=0.0014 Score=61.42 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH-------------HH----Hh------hCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS-------------KA----TG------TMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~-------------e~----l~------e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
||||+|+| +|.||. .++..+.... +. +. ..|+.++.+.+++...+|+||.+++|.
T Consensus 1 ~ikV~IiGa~G~MG~-~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~ 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGR-ELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE 79 (266)
T ss_pred CeEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH
Confidence 47999999 699999 4554422110 01 10 135666677777655799999999999
Q ss_pred cHHHHHHhhccccCCCC-EEEEecCCCcHHHHHh
Q psy6714 188 IVPVALNDIKPVFNESN-LLISVAGGVPIKNMEQ 220 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~-IVVSiaaGV~ie~L~~ 220 (303)
...+++..... .++ +|+.. .|.+.+.+++
T Consensus 80 ~~~~~~~~al~---~g~~vVigt-tg~~~e~~~~ 109 (266)
T TIGR00036 80 GVLNHLKFALE---HGVRLVVGT-TGFSEEDKQE 109 (266)
T ss_pred HHHHHHHHHHH---CCCCEEEEC-CCCCHHHHHH
Confidence 98888876543 333 44434 4787665544
No 140
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.04 E-value=0.0037 Score=59.28 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=58.9
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+...+++|||+|.||. +++..+. +..+ .+.+.|.... .+..+.++++|+||.++|...+. .
T Consensus 149 l~gk~v~IiG~G~iG~-avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~---~ 224 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGM-TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLT---A 224 (287)
T ss_pred CCCCEEEEEcChHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhC---H
Confidence 3457899999999999 4655432 2222 2334566533 24467788999999999765332 2
Q ss_pred hhccccCCCCEEEEec---CCCcHHHHHhhCCCCCceEEEecCcHH
Q psy6714 195 DIKPVFNESNLLISVA---GGVPIKNMEQALPKNSRIIRAMPNTPA 237 (303)
Q Consensus 195 eI~~~L~~g~IVVSia---aGV~ie~L~~~l~~~~~VVr~mPn~p~ 237 (303)
++...++++.+||.+. ++++.+ ..+..+ .+ ....|+.|.
T Consensus 225 ~~l~~~k~~aliIDlas~Pg~tdf~-~Ak~~G--~~-a~~~~glPg 266 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKPGGTDFE-YAKKRG--IK-ALLAPGLPG 266 (287)
T ss_pred HHHhcCCCCeEEEEeCcCCCCCCHH-HHHHCC--CE-EEEeCCCCc
Confidence 2333456788888665 355553 333333 12 233466664
No 141
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.02 E-value=0.007 Score=57.62 Aligned_cols=126 Identities=16% Similarity=0.261 Sum_probs=85.9
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhC---C-CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL---P-KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l---~-~~~~VVr~mPn~ 235 (303)
+.|+++++|..|+++++|++|+=+|--. -.++++++.++++.|.+|-+++ -++.-.|...| + .+..|..+||..
T Consensus 124 daGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tC-TIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 124 DLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHAC-TIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred HcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccc-cCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 5689999999999999999999998554 5788899999998888766544 45554444443 2 344566666542
Q ss_pred -HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHH
Q psy6714 236 -PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPA 290 (303)
Q Consensus 236 -p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPA 290 (303)
|..- ++..++ -.-.++++.+.+.+|.++.|+ .+.++.+....+..+++..-|
T Consensus 203 VPgt~-~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTA 256 (340)
T TIGR01723 203 VPEMK-GQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTA 256 (340)
T ss_pred CCCCC-CceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHH
Confidence 3222 233332 234589999999999999997 566776665555544443333
No 142
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.01 E-value=0.0016 Score=53.21 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=31.3
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++|+||+|+++....+++..+...+.+|++||++.+..
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 489999999999999998776555567899988776543
No 143
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.95 E-value=0.0019 Score=62.20 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCcEEEEcCChhhHHHHHHH------------HhhcHH-------HHhhCC--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS------------LNIVSK-------ATGTMG--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a------------l~r~~e-------~l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
-.++||||+|.||... +.. +++..+ .+.++| +.++.+.++++++||||++|++...
T Consensus 128 ~~~lgiiG~G~qA~~~-l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~-- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQ-LEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK-- 204 (325)
T ss_pred CCEEEEECCCHHHHHH-HHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 3579999999999832 222 122222 233456 4567889999999999999997542
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...+++|..|+++
T Consensus 205 P~~~--~~~l~~g~~v~~v 221 (325)
T TIGR02371 205 PVVK--ADWVSEGTHINAI 221 (325)
T ss_pred cEec--HHHcCCCCEEEec
Confidence 2321 1235678776544
No 144
>PLN02306 hydroxypyruvate reductase
Probab=96.90 E-value=0.0027 Score=62.79 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=59.8
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHH-----------hhcH-HHH----hhCC------------CeEecChHHhhcCCCEE
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASL-----------NIVS-KAT----GTMG------------AKITFDNKEVTLNSEVI 180 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al-----------~r~~-e~l----~e~G------------v~v~~d~~eav~~ADIV 180 (303)
.+..++|||||+|.||. .++..+ +... ... ..+| +....+..+++++||+|
T Consensus 162 ~L~gktvGIiG~G~IG~-~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 35678999999999999 454332 1111 111 1122 12234788999999999
Q ss_pred EEeeC-CccHHHHH-HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 181 ILAVK-PHIVPVAL-NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 181 ILAVp-P~~v~~VL-~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++| ......++ .+....++++.++|.+.=| |+.+.|.+.|..
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99998 44455555 2344457789999987733 344567666643
No 145
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.88 E-value=0.0026 Score=60.85 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCcEEEEcCChhhHHHHHH-H----------HhhcHHH-------HhhCC--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIA-S----------LNIVSKA-------TGTMG--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~-a----------l~r~~e~-------l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
...+|+|||+|.||..++.. . +++..++ +.+.| +.+..+.++++++||||+.|++.. .
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--~ 201 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--E 201 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--C
Confidence 35689999999999954331 1 1222222 22235 556678888999999998888755 3
Q ss_pred HHHHhhccccCCCCEEE
Q psy6714 191 VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVV 207 (303)
.++.. ..++++++|.
T Consensus 202 pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 202 PLVRG--EWLKPGTHLD 216 (314)
T ss_pred CEecH--HHcCCCCEEE
Confidence 44321 3466787544
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.87 E-value=0.0042 Score=59.33 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
..++|+|||+|.||. .++..+ ++..++ ..++|..+. .+..+.+.++|+||.|++.....+++
T Consensus 177 ~~~~V~ViGaG~iG~-~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 177 KGKKVLVIGAGEMGE-LAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred cCCEEEEECcHHHHH-HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 478999999999998 444432 122222 235566432 34566788999999999866665555
Q ss_pred Hhhcccc-CCCCEEEEecCCCc
Q psy6714 194 NDIKPVF-NESNLLISVAGGVP 214 (303)
Q Consensus 194 ~eI~~~L-~~g~IVVSiaaGV~ 214 (303)
..+.... ..+.+||.+..+-+
T Consensus 256 ~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCCCC
Confidence 4432222 24567777754433
No 147
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.83 E-value=0.0038 Score=60.44 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
...+++||||+|.||. .+++.++ +. .+..++.++.... ..+++++||+|+|.+| -.....++ .+
T Consensus 144 l~gktvGIiG~GrIG~-avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~ 221 (324)
T COG1052 144 LRGKTLGIIGLGRIGQ-AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAE 221 (324)
T ss_pred CCCCEEEEECCCHHHH-HHHHHHhcCCCEEEEECCCCChHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH
Confidence 3478999999999999 4665432 22 1222344455444 8899999999999998 44455555 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
....++++.++|.+.=| |+.+.|.+.|.
T Consensus 222 ~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 222 ELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 33457788899977633 34455666554
No 148
>KOG0069|consensus
Probab=96.73 E-value=0.0053 Score=59.73 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcH-------------HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVS-------------KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~-------------e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
..++|||+|+|.||. .++..++... +...+.+.. ..|..+.+.++|+|++|+| -.....++ ++
T Consensus 161 ~gK~vgilG~G~IG~-~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~ 238 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGK-AIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINKK 238 (336)
T ss_pred cCCEEEEecCcHHHH-HHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHH
Confidence 457999999999999 4554432211 112223333 3577788999999999998 55566666 45
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+...++++.+||.+.=| ++.+.+.+.+.+
T Consensus 239 ~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 239 FIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 66678889999988733 344667777764
No 149
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.72 E-value=0.0058 Score=57.77 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=48.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcHHH-------Hh----hC--CCeEe--cChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVSKA-------TG----TM--GAKIT--FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~e~-------l~----e~--Gv~v~--~d~~eav~~ADIVILAVp 185 (303)
||||+|||+|.||.+ ++..+ . ...++ +. .. ...+. .+. +.+++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~-ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGAT-LAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 689999999999984 43321 1 11110 10 11 12332 344 56899999999973
Q ss_pred --C--------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --P--------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P--------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. ..+.++++++.++. ++.++|-..+++++
T Consensus 80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~ 124 (307)
T PRK06223 80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 2 22556667777665 45566667777765
No 150
>PRK11579 putative oxidoreductase; Provisional
Probab=96.66 E-value=0.034 Score=53.46 Aligned_cols=73 Identities=4% Similarity=-0.010 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHHh-hC-CCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKATG-TM-GAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l~-e~-Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+ +...+++. ++ +.....|..++++ +.|+|++|+|+..-.+++..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~ 83 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA 83 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 479999999999973222221 12223333 33 4556788888885 57999999997666666544
Q ss_pred hccccCCCCEEE
Q psy6714 196 IKPVFNESNLLI 207 (303)
Q Consensus 196 I~~~L~~g~IVV 207 (303)
.. ..|+-|+
T Consensus 84 al---~aGkhVl 92 (346)
T PRK11579 84 AL---EAGKHVV 92 (346)
T ss_pred HH---HCCCeEE
Confidence 33 3455555
No 151
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.66 E-value=0.0034 Score=58.10 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=54.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-------------hhcHHHHh----hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASL-------------NIVSKATG----TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-------------~r~~e~l~----e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
|+|||||+|.||.. +.... ++..++++ ..+.....+..|.+.+.|+|+=|-.++.+++.+.+
T Consensus 1 l~vgiVGcGaIG~~-l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKF-LLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHH-HHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHH
Confidence 68999999999994 55443 23334443 33444557788888999999999999999999877
Q ss_pred hccccCCCCEEEEecC
Q psy6714 196 IKPVFNESNLLISVAG 211 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa 211 (303)
+... ..+.+|+|+-+
T Consensus 80 ~L~~-g~d~iV~SVGA 94 (255)
T COG1712 80 ILKA-GIDVIVMSVGA 94 (255)
T ss_pred HHhc-CCCEEEEechh
Confidence 6532 24566777643
No 152
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.63 E-value=0.015 Score=56.47 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=83.1
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcH---------------HHHhh-C----C---CeEe-cChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVS---------------KATGT-M----G---AKIT-FDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~---------------e~l~e-~----G---v~v~-~d~~eav~~ADIVILAVpP~ 187 (303)
|||+|||. |.+|. .++..+.... +.+.+ + + ..+. .+..++++++|+||+|+|..
T Consensus 1 ~kVaIiGATG~vG~-ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGG-ELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG 79 (346)
T ss_pred CEEEEECCCCHHHH-HHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch
Confidence 68999996 99999 4554432111 01111 1 1 1121 14455556899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCC-------CceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKN-------SRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~-------~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
...+++..+.. .|+.||+..+..-. +..+++.+.. ..++..+|....+--.+..+ +..+++.....
T Consensus 80 ~s~~~~~~~~~---~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~i-ianPgC~~t~~ 155 (346)
T TIGR01850 80 VSAELAPELLA---AGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARL-IANPGCYPTAT 155 (346)
T ss_pred HHHHHHHHHHh---CCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcE-EEcCCcHHHHH
Confidence 88888877643 57788887765533 2344444311 14677777764332233333 33344554443
Q ss_pred -HHHHHHHHhcCCcEEcCCCCchhhhhhccch
Q psy6714 258 -QTVINLFKSVGTCEEVPEYLLDGITGLSGSG 288 (303)
Q Consensus 258 -e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsg 288 (303)
-.+..|++.-+.. .+.-..|...++||.|
T Consensus 156 ~l~L~PL~~~~~i~--~~~i~v~~~sgvSGaG 185 (346)
T TIGR01850 156 LLALAPLLKEGLID--PTSIIVDAKSGVSGAG 185 (346)
T ss_pred HHHHHHHHHcCCCC--CCcEEEEEEEECcccC
Confidence 3466666543221 1112466667777766
No 153
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.62 E-value=0.0045 Score=59.16 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcH--H--H-H---h-----hCC--CeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVS--K--A-T---G-----TMG--AKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~--e--~-l---~-----e~G--v~v~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||+|.||.+ ++..+ . ... . . + . ... +..+.|..+ +++||+||+++.
T Consensus 1 ~~KV~VIGaG~vG~~-iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag 78 (305)
T TIGR01763 1 RKKISVIGAGFVGAT-TAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG 78 (305)
T ss_pred CCEEEEECcCHHHHH-HHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC
Confidence 479999999999984 33221 1 000 0 1 1 0 111 223356555 789999999995
Q ss_pred -Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 -PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 -P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|. .+.+++++|.++. ++.+||...+++++-
T Consensus 79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~ 124 (305)
T TIGR01763 79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAM 124 (305)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHH
Confidence 22 2345556677665 566777788888763
No 154
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.55 E-value=0.0055 Score=59.06 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=79.5
Q ss_pred CcEEEEc-CChhhHHHHHHHHhhcHHH-Hh---hC-CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEE
Q psy6714 133 SDKQIAG-TTERGPGALIASLNIVSKA-TG---TM-GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL 206 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r~~e~-l~---e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IV 206 (303)
-||+|+| .|-.|. .|.+.+....+- +. .. .+. ..+..++++++|+||+|+|.....+++..+. ..+..|
T Consensus 2 ~~v~IvGasGy~G~-el~rlL~~HP~~el~~l~s~~~~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~---~~g~~V 76 (310)
T TIGR01851 2 PKVFIDGEAGTTGL-QIRERLSGRDDIELLSIAPDRRKD-AAERAKLLNAADVAILCLPDDAAREAVSLVD---NPNTCI 76 (310)
T ss_pred CeEEEECCCChhHH-HHHHHHhCCCCeEEEEEecccccC-cCCHhHhhcCCCEEEECCCHHHHHHHHHHHH---hCCCEE
Confidence 3799998 788888 566655443321 10 00 011 1234456678999999999988888877654 257778
Q ss_pred EEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh---CCcEEEEeCCCCCHHHH-HHHHHHHHhcCCcEEcCCCCchhhh
Q psy6714 207 ISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR---QGASVFVRGSSASDQDA-QTVINLFKSVGTCEEVPEYLLDGIT 282 (303)
Q Consensus 207 VSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~---~G~til~~g~~~~~e~~-e~V~~Lfs~iG~~v~vdE~~~Da~t 282 (303)
|++.+..-.+ ..++..+|....... .+..++. .+.+..... -.+..|++. |..-..-.--+|..+
T Consensus 77 IDlSadfRl~---------~~~~yglPEln~~~~~~i~~a~lIA-nPgC~aTa~~LaL~PL~~~-~li~~~~~~~~~a~S 145 (310)
T TIGR01851 77 IDASTAYRTA---------DDWAYGFPELAPGQREKIRNSKRIA-NPGCYPTGFIALMRPLVEA-GILPADFPITINAVS 145 (310)
T ss_pred EECChHHhCC---------CCCeEEccccCHHHHHhhccCCEEE-CCCCHHHHHHHHHHHHHHc-CCccccceEEEEecc
Confidence 8775532111 257778887743222 1222323 334444433 345566553 432111124467777
Q ss_pred hhccchHHH
Q psy6714 283 GLSGSGPAY 291 (303)
Q Consensus 283 AlsGsgPAf 291 (303)
.+||.|=+-
T Consensus 146 G~SGAGr~~ 154 (310)
T TIGR01851 146 GYSGGGKAM 154 (310)
T ss_pred ccCccChhh
Confidence 777766443
No 155
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0055 Score=58.70 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=46.2
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCe--Eec----ChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAK--ITF----DNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~--v~~----d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+||| .|.||.+|..+. .+.|+. ++. +..+++++|||||.||. +..+..++ ++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L--------~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~------lk 221 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLL--------LAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDW------IK 221 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHH--------HhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchhe------ec
Confidence 4468999999 999999743322 233443 332 56788999999999996 55444433 66
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~GavVIDv 229 (296)
T PRK14188 222 PGATVIDV 229 (296)
T ss_pred CCCEEEEc
Confidence 88888865
No 156
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.0083 Score=57.18 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=46.6
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+|||. |.||.+|..+.+ +.|.++ +.+..+.+++||+||.|+. |..+.... ++
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~--------~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~------ik 221 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLL--------DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEF------VK 221 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHH--------HCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHH------cc
Confidence 44679999998 999997443332 233332 2356778999999999995 66665543 66
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~GavVIDv 229 (284)
T PRK14179 222 EGAVVIDV 229 (284)
T ss_pred CCcEEEEe
Confidence 88888865
No 157
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.40 E-value=0.021 Score=55.38 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcH-HHHh-hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVS-KATG-TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~-e~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~e 195 (303)
++||+|||+|+||.. ++..+. +.. +.+. ..++....+..+++.+.|+|++|+|+.. ++.++..
T Consensus 3 kIRVgIVG~GnIGr~-~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~ 80 (324)
T TIGR01921 3 KIRAAIVGYGNLGRS-VEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPY 80 (324)
T ss_pred CcEEEEEeecHHHHH-HHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHH
Confidence 479999999999994 444322 121 2222 2344444566667788999999998544 4333333
No 158
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.022 Score=55.64 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcH--------------HHHh-----hCCC---eE-ecChHHh-hcCCCEEEEeeC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVS--------------KATG-----TMGA---KI-TFDNKEV-TLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~--------------e~l~-----e~Gv---~v-~~d~~ea-v~~ADIVILAVp 185 (303)
+|+||+||| .|--|. -|.+.+.... +.+. ..|. .. ..++.++ .++||+||||+|
T Consensus 1 ~~~kV~IvGasGYtG~-EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGL-ELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHH-HHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecC
Confidence 478999998 676676 5665532211 0111 1121 11 1233333 456999999999
Q ss_pred CccHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCC-------CceEEEecCcHH-hhhCCcEEEEeCCCCCH
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKN-------SRIIRAMPNTPA-LVRQGASVFVRGSSASD 254 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~-------~~VVr~mPn~p~-~v~~G~til~~g~~~~~ 254 (303)
...-.+++.++.. .+..||.+++..-+ +..+++.+.. ...+..+|-... ++.+..-+-.+| +-+
T Consensus 80 hg~s~~~v~~l~~---~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPG--Cyp 154 (349)
T COG0002 80 HGVSAELVPELLE---AGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPG--CYP 154 (349)
T ss_pred chhHHHHHHHHHh---CCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCC--chH
Confidence 9999888887653 45568888776544 3455555421 146667776553 333333333333 333
Q ss_pred H-HHHHHHHHHHhcCCcEEcCC-CCchhhhhhccch
Q psy6714 255 Q-DAQTVINLFKSVGTCEEVPE-YLLDGITGLSGSG 288 (303)
Q Consensus 255 e-~~e~V~~Lfs~iG~~v~vdE-~~~Da~tAlsGsg 288 (303)
. ..-.+..|++. |. +..+- -..|+.+.+||.|
T Consensus 155 Ta~iLal~PL~~~-~l-l~~~~~~ivdakSG~SGaG 188 (349)
T COG0002 155 TAAILALAPLVKA-GL-LDPDSPPIVDAKSGVSGAG 188 (349)
T ss_pred HHHHHHHHHHHHc-CC-cCCCCceEEEEeEecCcCC
Confidence 3 33445555543 21 11111 1366777776654
No 159
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.37 E-value=0.01 Score=56.98 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcH-----HHHhhCCCeEe-cChHHhhc-----CCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVS-----KATGTMGAKIT-FDNKEVTL-----NSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~-----e~l~e~Gv~v~-~d~~eav~-----~ADIVILAVpP~~v 189 (303)
++||||||+|.||...+....+ .+. ...+++|+... .+.+++++ +.|+||+|++...-
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 5789999999999942222211 111 22346788653 56667764 58999999998877
Q ss_pred HHHHHhhccccCCCCEEEE
Q psy6714 190 PVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVS 208 (303)
.+....+.+ .|+.||.
T Consensus 84 ~e~a~~a~e---aGk~VID 99 (302)
T PRK08300 84 VRHAAKLRE---AGIRAID 99 (302)
T ss_pred HHHHHHHHH---cCCeEEE
Confidence 777655543 4566663
No 160
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.35 E-value=0.015 Score=56.62 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhh--cHH----------H----HhhCC--CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNI--VSK----------A----TGTMG--AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r--~~e----------~----l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
+||||+|+| +|.+|. .|...+.+ .+. . +...| +.+.....+.++++|+||+|+|+.....
T Consensus 3 ~~~~IaIvGATG~vG~-eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~ 81 (336)
T PRK05671 3 QPLDIAVVGATGTVGE-ALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRS 81 (336)
T ss_pred CCCEEEEEccCCHHHH-HHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHH
Confidence 468999999 799999 46655432 110 0 11112 1221111223578999999999877777
Q ss_pred HHHhhccccCCCCEEEEecCCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV 213 (303)
++..+.. .|..||+..+..
T Consensus 82 ~v~~~~~---~G~~VIDlS~~f 100 (336)
T PRK05671 82 FAEKARA---AGCSVIDLSGAL 100 (336)
T ss_pred HHHHHHH---CCCeEEECchhh
Confidence 7666543 567788776644
No 161
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.30 E-value=0.0095 Score=57.89 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---H-Hhh------------------CCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---A-TGT------------------MGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~-l~e------------------~Gv~v~~d~~eav~~A 177 (303)
|+||||+|+|.||. .++..+.. ..+ + ++. .++.+..+..+++.++
T Consensus 1 ~ikVaI~G~GrIGr-~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~v 79 (341)
T PRK04207 1 MIKVGVNGYGTIGK-RVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKA 79 (341)
T ss_pred CeEEEEECCCHHHH-HHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccC
Confidence 57999999999999 55554221 111 1 111 2344555667777889
Q ss_pred CEEEEeeCCccHHHHHHhhccccCCCCEEE
Q psy6714 178 EVIILAVKPHIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 178 DIVILAVpP~~v~~VL~eI~~~L~~g~IVV 207 (303)
|+||.|+++....+.+..... .|+.+|
T Consensus 80 DVVIdaT~~~~~~e~a~~~~~---aGk~VI 106 (341)
T PRK04207 80 DIVVDATPGGVGAKNKELYEK---AGVKAI 106 (341)
T ss_pred CEEEECCCchhhHHHHHHHHH---CCCEEE
Confidence 999999999888877765432 445555
No 162
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.29 E-value=0.017 Score=54.93 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..|++|||.|.+|.. ++..++ +..+ .+...|+... .+..+.+.++|+||.|+|+..+. ++.
T Consensus 152 g~kvlViG~G~iG~~-~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~---~~~ 227 (296)
T PRK08306 152 GSNVLVLGFGRTGMT-LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT---KEV 227 (296)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh---HHH
Confidence 578999999999994 444322 2222 2345677643 24567788999999999865332 233
Q ss_pred ccccCCCCEEEEec
Q psy6714 197 KPVFNESNLLISVA 210 (303)
Q Consensus 197 ~~~L~~g~IVVSia 210 (303)
...++++.+||.+.
T Consensus 228 l~~~~~g~vIIDla 241 (296)
T PRK08306 228 LSKMPPEALIIDLA 241 (296)
T ss_pred HHcCCCCcEEEEEc
Confidence 33456788888665
No 163
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.051 Score=50.73 Aligned_cols=140 Identities=13% Similarity=0.027 Sum_probs=82.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHHhhCCCeEecChHHh---hcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKATGTMGAKITFDNKEV---TLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l~e~Gv~v~~d~~ea---v~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.|.+||||+|..|...|.++. .+..++.+.+-=.....+.++ .+-.++||.-||...+..+.....
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa~~~- 88 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAATSL- 88 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHHhcc-
Confidence 578999999999995354442 222333322110111222233 344577777777765666654443
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----hh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCC-c
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----VR--QGASVFVRGSSASDQDAQTVINLFKSVGT-C 270 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~ 270 (303)
..++++|+++++....+.|...-..+|--..+||+.... .. .+..+ +....|+-....+++|...||. .
T Consensus 89 -~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~--~i~eaD~~g~ai~q~la~emgg~~ 165 (289)
T COG5495 89 -NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIF--GITEADDVGYAIVQSLALEMGGEP 165 (289)
T ss_pred -cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEE--EeecccccccHHHHHHHHHhCCCc
Confidence 458999998887777776666544455556788875432 11 22222 2223355566889999999985 5
Q ss_pred EEcCC
Q psy6714 271 EEVPE 275 (303)
Q Consensus 271 v~vdE 275 (303)
+.+.|
T Consensus 166 f~V~~ 170 (289)
T COG5495 166 FCVRE 170 (289)
T ss_pred eeech
Confidence 66654
No 164
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.20 E-value=0.012 Score=56.21 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=44.6
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHHh----hC--------CCeEecChHHhhcCCCEEEEeeCCc-
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKATG----TM--------GAKITFDNKEVTLNSEVIILAVKPH- 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l~----e~--------Gv~v~~d~~eav~~ADIVILAVpP~- 187 (303)
|||+|||+|.+|.. ++..+ ++..+++. ++ ...+..+..+.+++||+||+|+...
T Consensus 1 mkI~IIGaG~VG~~-~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGST-TAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHH-HHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence 79999999999994 44331 11111111 00 1122223346689999999999631
Q ss_pred ----c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 188 ----I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 188 ----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. +.+++++|..+-.++ +|+-..+.++.
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~tNP~d~ 121 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVVTNPVDV 121 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHH
Confidence 1 345555666554344 44434455543
No 165
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.18 E-value=0.011 Score=50.12 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=47.0
Q ss_pred CcEEEEcC-ChhhHHHHHHHH------------hhcHH----------HHh-hC--CCeEecChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGT-TERGPGALIASL------------NIVSK----------ATG-TM--GAKITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al------------~r~~e----------~l~-e~--Gv~v~~d~~eav~~ADIVILAVp- 185 (303)
|||+|||+ |++|. .++..+ +...+ +.. .. ...+..+..+.+++||+||++.-
T Consensus 1 ~KV~IiGa~G~VG~-~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGS-TLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHH-HHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHH-HHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 79999999 99999 455432 11111 111 11 23444566778899999999982
Q ss_pred ---C-ccH-----------HHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---P-HIV-----------PVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P-~~v-----------~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| +.- .++.+.+..+- ++.++|-+.++++.
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~ 123 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDV 123 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHH
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHH
Confidence 2 112 22333444443 55667767777764
No 166
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.05 E-value=0.019 Score=54.83 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHH-------HHhhCCCeE-ecChHHhhcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSK-------ATGTMGAKI-TFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e-------~l~e~Gv~v-~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
...+++|||+|.+|. +.+..+ +++.+ .+...++.+ ..+.++++.++|+||.|++...
T Consensus 124 ~~~~v~IiGaG~qa~-~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~-- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQAR-AHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCEEEEECCcHHHH-HHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence 346899999999998 333321 22222 222334443 3677788999999999998664
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++.. .+++|+.|+.+
T Consensus 201 Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 201 PVYPE---AARAGRLVVAV 216 (304)
T ss_pred ceeCc---cCCCCCEEEec
Confidence 44432 36788866543
No 167
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.98 E-value=0.06 Score=48.32 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=70.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHh-hCCCeEecChHHhh-cCCCEEEEeeCCc-cHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATG-TMGAKITFDNKEVT-LNSEVIILAVKPH-IVPVAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~-e~Gv~v~~d~~eav-~~ADIVILAVpP~-~v~~VL 193 (303)
+..|+|+|+|+|.||.. ++..+. ...+ .+. .+|..... ..++. .+||++|.|..-. .-.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~-~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~ 103 (200)
T cd01075 26 LEGKTVAVQGLGKVGYK-LAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGGVINDDTI 103 (200)
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEecccccccCHHHH
Confidence 34688999999999994 555432 1222 222 34666543 34444 3799999775433 233444
Q ss_pred HhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhhhCCcEEEE---eCCCCCHHHHHHHHHHHHhcCC
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALVRQGASVFV---RGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v~~G~til~---~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+++. .++|+.-.++... ..-.+.|.. ..|.++|..-..- .|+..-+ .+ ...++..+.++.+++.+-.
T Consensus 104 ~~l~-----~~~v~~~AN~~~~~~~~~~~L~~--~Gi~~~Pd~~~Na-GGv~~~~~e~~~-~~~~~~~~~~~~~~~~~~~ 174 (200)
T cd01075 104 PQLK-----AKAIAGAANNQLADPRHGQMLHE--RGILYAPDYVVNA-GGLINVADELYG-GNEARVLAKVEAIYDTLLE 174 (200)
T ss_pred HHcC-----CCEEEECCcCccCCHhHHHHHHH--CCCEEeCceeeeC-cCceeehhHHhC-CcHHHHHHHHHHHHHHHHH
Confidence 4443 4577766665333 233334431 3466666543211 1332211 11 1133556677777766655
Q ss_pred cEEcC
Q psy6714 270 CEEVP 274 (303)
Q Consensus 270 ~v~vd 274 (303)
++...
T Consensus 175 v~~~a 179 (200)
T cd01075 175 IFAQA 179 (200)
T ss_pred HHHHH
Confidence 54443
No 168
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.97 E-value=0.02 Score=55.02 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=53.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH----------Hhh-C---CCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA----------TGT-M---GAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~----------l~e-~---Gv~v~~d~~eav~~ADIVILAVp 185 (303)
++||+|||+|++|. .++..+ +...+. ... . .+..+.+.+ .+++|||||++.-
T Consensus 3 ~~Ki~IiGaG~VG~-~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGVGQVGM-ACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence 57999999999998 454331 111111 110 1 122234555 4899999999762
Q ss_pred ----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecC
Q psy6714 186 ----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPN 234 (303)
Q Consensus 186 ----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn 234 (303)
|.. +.++.+.|..+ .++.++|-+.+++++- .+.+. ++. .+++.+...
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~sg~p~-~~viG~gt~ 147 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLSGLPK-HRVIGSGCN 147 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHhCCCH-HHEEecCch
Confidence 221 23344455555 3556677677777653 23333 442 355555433
No 169
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.96 E-value=0.028 Score=53.60 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=45.4
Q ss_pred CcEEEEcCChhhHHHHHHH-Hh-----------hc-----HHHHhhCCCeEe-cChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS-LN-----------IV-----SKATGTMGAKIT-FDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a-l~-----------r~-----~e~l~e~Gv~v~-~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
+||||||+|.||. .+... ++ .+ .+..+++|+... .+.+++++ +.|+||+|++...-.+.
T Consensus 2 lrVAIIG~G~IG~-~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGSGNIGT-DLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeCcHHHH-HHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 6899999999998 33322 11 11 122346787654 46666664 57999999998777666
Q ss_pred HHhhccccCCCCEEE
Q psy6714 193 LNDIKPVFNESNLLI 207 (303)
Q Consensus 193 L~eI~~~L~~g~IVV 207 (303)
...... .|+.||
T Consensus 81 a~~al~---aGk~VI 92 (285)
T TIGR03215 81 ARLLAE---LGKIVI 92 (285)
T ss_pred HHHHHH---cCCEEE
Confidence 655432 455554
No 170
>KOG2653|consensus
Probab=95.95 E-value=0.019 Score=56.49 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=78.0
Q ss_pred CCcEEEEcCChhhHHHHHHH----------HhhcHHH----Hh--hCCCe--EecChHHhh---cCCCEEEEeeC-CccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS----------LNIVSKA----TG--TMGAK--ITFDNKEVT---LNSEVIILAVK-PHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a----------l~r~~e~----l~--e~Gv~--v~~d~~eav---~~ADIVILAVp-P~~v 189 (303)
.+.||.|||+.||. .|++- +|++..+ +. ..|.. -..+++|.+ +..-+|+|-|+ -..+
T Consensus 6 ~~digLiGLaVMGq-nLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQ-NLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred ccchhhhhHhhhhh-hhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 46799999999999 56643 3333322 21 22333 345666654 57889999998 5557
Q ss_pred HHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
..++++|.++|.++.+||.-=+..- ....+++...+.-+|.+.-+-..+ .+.|.+++..+ ++++...++.+|+
T Consensus 85 D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg---~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 85 DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGG---SKEAWPHIKDIFQ 161 (487)
T ss_pred HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCC---ChHHHHHHHHHHH
Confidence 7788999999999999885433221 223444333333333332111111 11234444433 7778888888888
Q ss_pred hc
Q psy6714 266 SV 267 (303)
Q Consensus 266 ~i 267 (303)
.+
T Consensus 162 ~i 163 (487)
T KOG2653|consen 162 KI 163 (487)
T ss_pred HH
Confidence 76
No 171
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.93 E-value=0.021 Score=54.35 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh------hCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------TG------TMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~------e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+||+|||+|.+|. .++..+ ++..++ +. ..+..+.....+.+++||+||+++...
T Consensus 1 ~kI~IIGaG~vG~-~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGS-SFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 4899999999999 454431 111111 10 112233334445678999999999531
Q ss_pred ----------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 188 ----------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 188 ----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.++.+.+..+- ++.+||-..+++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~ 122 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDV 122 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHH
Confidence 1344445565544 45566666677765
No 172
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.80 E-value=0.013 Score=56.23 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=49.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHH-----HH-----h-hCC--CeE--ecChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSK-----AT-----G-TMG--AKI--TFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e-----~l-----~-e~G--v~v--~~d~~eav~~ADIVILAV 184 (303)
+++||+|||+|.||.. ++..+ +...+ .+ . ..+ ..+ ..+.+ .+++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~-ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGST-VALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHH-HHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 3679999999999984 44321 11111 11 0 112 222 24444 789999999999
Q ss_pred --C--C------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 --K--P------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 --p--P------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+ + ..+.++++.+..+. ++.++|-..+++++
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di 127 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDC 127 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHH
Confidence 2 3 33567777777654 55556656676654
No 173
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.64 E-value=0.095 Score=51.34 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=78.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH---------------HH--hhCCCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK---------------AT--GTMGAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e---------------~l--~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
.+|||||| +|..|. .|...+.. ..+ .+ ....+.+.....+.+.++|+||+|++.....+
T Consensus 5 ~~~VaIvGATG~vG~-ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~ 83 (347)
T PRK06728 5 GYHVAVVGATGAVGQ-KIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ 83 (347)
T ss_pred CCEEEEEeCCCHHHH-HHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence 57999999 799999 45555432 111 00 00112222222334578999999999888888
Q ss_pred HHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH-hhhCCcEEEEeCCCCCHHHH-HHHHHHHHhcCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA-LVRQGASVFVRGSSASDQDA-QTVINLFKSVGT 269 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~-~v~~G~til~~g~~~~~e~~-e~V~~Lfs~iG~ 269 (303)
+...+.. .|..||+..+..-. . ..+-..+|.+.. .+..... ++..+++..... -.+..|++..+.
T Consensus 84 ~~~~~~~---~G~~VID~Ss~fR~-------~--~~vplvvPEvN~e~i~~~~~-iIanPnC~tt~~~laL~PL~~~~~i 150 (347)
T PRK06728 84 FVNQAVS---SGAIVIDNTSEYRM-------A--HDVPLVVPEVNAHTLKEHKG-IIAVPNCSALQMVTALQPIRKVFGL 150 (347)
T ss_pred HHHHHHH---CCCEEEECchhhcC-------C--CCCCeEeCCcCHHHHhccCC-EEECCCCHHHHHHHHHHHHHHcCCc
Confidence 8776543 57788877653322 1 122245555432 2222111 233344544433 345666665554
Q ss_pred cEEcCCCCchhhhhhccchHHHHHH
Q psy6714 270 CEEVPEYLLDGITGLSGSGPAYRYE 294 (303)
Q Consensus 270 ~v~vdE~~~Da~tAlsGsgPAf~~~ 294 (303)
+.-..+...++||.|-.-+-.
T Consensus 151 ----~~v~V~t~qavSGAG~~gv~e 171 (347)
T PRK06728 151 ----ERIIVSTYQAVSGSGIHAIQE 171 (347)
T ss_pred ----cEEEEEEeecccccchhhHHH
Confidence 223345556777777555443
No 174
>KOG2304|consensus
Probab=95.64 E-value=0.016 Score=53.98 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=66.7
Q ss_pred EecChHHhhcCCCEEEEee-CCccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEe--cCcHHhhhC
Q psy6714 166 ITFDNKEVTLNSEVIILAV-KPHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAM--PNTPALVRQ 241 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAV-pP~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~m--Pn~p~~v~~ 241 (303)
.+++..+++.++|+||=++ -.-++ .+++++|-...++++++.|-...+.+..+...+.....+...| .-.|+. +
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvM--K 163 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVM--K 163 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhH--H
Confidence 4567778899999998776 23333 3556666666667888888888888888877665433444433 333321 1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCcE
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~v 271 (303)
=+- ++-.+..+++.+..+..+-+.+|+..
T Consensus 164 LvE-Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 164 LVE-VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred Hhh-hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 111 12345667888888888888888753
No 175
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.63 E-value=0.022 Score=53.90 Aligned_cols=66 Identities=6% Similarity=0.005 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhh--CCCeEecChHHh-hcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGT--MGAKITFDNKEV-TLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e--~Gv~v~~d~~ea-v~~ADIVILAVpP~~v~~VL~ 194 (303)
.+||||||+|.||. .++..+.. ..++..+ ..+.++.+..++ ...+|+|+=|-.++.+.+...
T Consensus 2 ~~rvgiIG~GaIG~-~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~ 80 (267)
T PRK13301 2 THRIAFIGLGAIAS-DVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE 80 (267)
T ss_pred ceEEEEECccHHHH-HHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHH
Confidence 47899999999999 56654321 1112111 125567778885 578999999999999998887
Q ss_pred hhcc
Q psy6714 195 DIKP 198 (303)
Q Consensus 195 eI~~ 198 (303)
.+..
T Consensus 81 ~iL~ 84 (267)
T PRK13301 81 GCLT 84 (267)
T ss_pred HHHh
Confidence 7653
No 176
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.57 E-value=0.058 Score=51.84 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh---h--CCCeEecChHHhhcCCCEEEEeeC-C
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG---T--MGAKITFDNKEVTLNSEVIILAVK-P 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~---e--~Gv~v~~d~~eav~~ADIVILAVp-P 186 (303)
.+||+|||+|.+|. .++..+ +...++ +. . ..+.+..+..+.+++||+||++-- |
T Consensus 6 ~~ki~iiGaG~vG~-~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 6 HNKVVLVGDGAVGS-SYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 46999999999999 455431 111111 11 1 133444455567899999999873 2
Q ss_pred cc---------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 HI---------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 ~~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.. +.+++..+..+- ++.+||-..+++++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~ 127 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDI 127 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHH
Confidence 21 344445555443 44455556666654
No 177
>PRK15076 alpha-galactosidase; Provisional
Probab=95.52 E-value=0.028 Score=56.38 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.4
Q ss_pred eEecChHHhhcCCCEEEEeeCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP 186 (303)
..++|..+++++||+||.++..
T Consensus 64 ~~ttD~~eal~dADfVv~ti~v 85 (431)
T PRK15076 64 TATTDRREALQGADYVINAIQV 85 (431)
T ss_pred EEECCHHHHhCCCCEEeEeeee
Confidence 3456767889999999999953
No 178
>PRK10206 putative oxidoreductase; Provisional
Probab=95.48 E-value=0.13 Score=49.69 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=40.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH-------------hhcHH--H-HhhCC-CeEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL-------------NIVSK--A-TGTMG-AKITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-------------~r~~e--~-l~e~G-v~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
++||||||+|.++....+..+ ++..+ . ..+++ +.+..|.+++++ +.|+|++|+|+..-.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 468999999998752211111 11111 1 23454 556678888885 57999999997766666
Q ss_pred HHhh
Q psy6714 193 LNDI 196 (303)
Q Consensus 193 L~eI 196 (303)
+...
T Consensus 81 ~~~a 84 (344)
T PRK10206 81 AKRA 84 (344)
T ss_pred HHHH
Confidence 5443
No 179
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.47 E-value=0.063 Score=53.61 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.6
Q ss_pred eEecChHHhhcCCCEEEEeeCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP 186 (303)
..++|..+++++||+||.+++.
T Consensus 63 ~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 63 EATTDRREALDGADFVINTIQV 84 (423)
T ss_pred EEeCCHHHHhcCCCEEEEeeEe
Confidence 3567778899999999999985
No 180
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.38 E-value=0.054 Score=51.07 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=47.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-------------hhcHHH----HhhCCCe-EecChHHhhcC--CCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-------------NIVSKA----TGTMGAK-ITFDNKEVTLN--SEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-------------~r~~e~----l~e~Gv~-v~~d~~eav~~--ADIVILAVpP~~v~ 190 (303)
+++||||||+|.++.......+ ++..++ .+++|+. ...|.++++++ .|+|+||+|+..=.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 4789999999977752222221 122222 3467874 77888888875 59999999976655
Q ss_pred HHHHhhccccCCCCEEE
Q psy6714 191 VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVV 207 (303)
+++.. .|..|+-|+
T Consensus 82 e~~~~---AL~aGkhVl 95 (342)
T COG0673 82 ELALA---ALEAGKHVL 95 (342)
T ss_pred HHHHH---HHhcCCEEE
Confidence 55533 233566555
No 181
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.36 E-value=0.049 Score=53.11 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=48.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH--------------HHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK--------------ATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e--------------~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.+||+||| +|..|. .|...+.. ... .+...|. .+.....+.++++|+||+|++.....++
T Consensus 7 ~~kVaVvGAtG~vG~-eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQ-EFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHH-HHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 57999998 888888 45555432 110 0111121 1211223456889999999999988888
Q ss_pred HHhhccccCCCCEEEEecCCC
Q psy6714 193 LNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV 213 (303)
+.++.. .|..||+..+..
T Consensus 86 ~~~~~~---~g~~VIDlS~~f 103 (344)
T PLN02383 86 GPIAVD---KGAVVVDNSSAF 103 (344)
T ss_pred HHHHHh---CCCEEEECCchh
Confidence 776532 577888776543
No 182
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.30 E-value=0.057 Score=53.40 Aligned_cols=78 Identities=5% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHhhCC-----CeE--ecCh-HHhhcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSK--------------ATGTMG-----AKI--TFDN-KEVTLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~e~G-----v~v--~~d~-~eav~~ADIVILAVpP~ 187 (303)
++|||+||| +|..|. .|...+..... .+.... ... ..+. .+.++++|+||+|++..
T Consensus 37 ~~~kVaIvGATG~vG~-eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGA-EVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred cccEEEEECCCChHHH-HHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 578999999 799998 45544322110 011101 000 1111 22357899999999998
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
...+++..+. .+..||++.+..
T Consensus 116 ~s~~i~~~~~----~g~~VIDlSs~f 137 (381)
T PLN02968 116 TTQEIIKALP----KDLKIVDLSADF 137 (381)
T ss_pred HHHHHHHHHh----CCCEEEEcCchh
Confidence 7777777652 467788776543
No 183
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.22 E-value=0.045 Score=52.61 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHHH-------Hh-hCCC--eEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSKA-------TG-TMGA--KITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e~-------l~-e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
..+++|||+|.+|...+... +++..++ +. +.|+ ....+.++++.++|+||.|++..+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~-- 204 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT-- 204 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC--
Confidence 45799999999998322211 1222222 21 2355 345677888999999999998653
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ..+++|+.|+++
T Consensus 205 p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 205 PVFS---EKLKKGVHINAV 220 (325)
T ss_pred cchH---HhcCCCcEEEec
Confidence 3443 346788876654
No 184
>PLN02602 lactate dehydrogenase
Probab=95.19 E-value=0.054 Score=52.98 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=55.0
Q ss_pred ccccccCCCcCCCCCCCCCCCCcccccCCCcEEEEcCChhhHHHHHHHH------------hhcHH----------HHh-
Q psy6714 104 NECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTERGPGALIASL------------NIVSK----------ATG- 160 (303)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIgIIGlG~MG~~~La~al------------~r~~e----------~l~- 160 (303)
+-|..-.|..++.+.- .++ ..+||+|||+|++|. .++..+ +...+ +..
T Consensus 17 ~~~~~~~~~~~~~~~m----~~~----~~~KI~IIGaG~VG~-~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~ 87 (350)
T PLN02602 17 LSQAFFKPIHNSSPPS----PTR----RHTKVSVVGVGNVGM-AIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA 87 (350)
T ss_pred hhhhhhhccccccccc----ccC----CCCEEEEECCCHHHH-HHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh
Confidence 3466666666665511 001 127999999999999 455431 11111 111
Q ss_pred hCC-CeEec-ChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 161 TMG-AKITF-DNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 161 e~G-v~v~~-d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
-.+ ..+.. ..-+.+++|||||++-- |.. +.++.+.|..+- ++.++|-..+++++-
T Consensus 88 ~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~ 160 (350)
T PLN02602 88 FLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVL 160 (350)
T ss_pred cCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHH
Confidence 111 34432 22345899999999962 211 223334455433 555677677777653
No 185
>PRK07589 ornithine cyclodeaminase; Validated
Probab=94.97 E-value=0.039 Score=53.95 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHH-HH----------HhhcHH-------HHhhCC--CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALI-AS----------LNIVSK-------ATGTMG--AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La-~a----------l~r~~e-------~l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
-.+++|||+|..+...+. .. +++..+ .+.+.| +.++.+.++++++||||+.|++...-..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P 208 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT 208 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence 357999999999972221 11 122222 233334 4456888999999999999997543223
Q ss_pred HHHhhccccCCCCEEEEecC
Q psy6714 192 ALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaa 211 (303)
++.. +.+++|+.|. .++
T Consensus 209 vl~~--~~lkpG~hV~-aIG 225 (346)
T PRK07589 209 ILTD--DMVEPGMHIN-AVG 225 (346)
T ss_pred eecH--HHcCCCcEEE-ecC
Confidence 3321 2456777644 443
No 186
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.90 E-value=0.067 Score=51.90 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~ 153 (303)
.++|+|||+|.||. .++..+.
T Consensus 2 ~i~V~IiG~G~VG~-~~~~~L~ 22 (341)
T PRK06270 2 EMKIALIGFGGVGQ-GVAELLA 22 (341)
T ss_pred eEEEEEECCCHHHH-HHHHHHH
Confidence 47899999999999 4555443
No 187
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.89 E-value=0.14 Score=47.69 Aligned_cols=130 Identities=20% Similarity=0.328 Sum_probs=81.2
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC----CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKP-HIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP----KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~----~~~~VVr~mPn~ 235 (303)
+.|+.+++|..++++++|+||.=+|- ..-.++++.+.+-+.+|.||- -..-+...++.+.|. .+.++-.+||..
T Consensus 124 d~g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~ 202 (343)
T COG4074 124 DMGIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGT 202 (343)
T ss_pred HceeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCC
Confidence 56888889999999999999988863 333456666666666787654 444577666666553 245677777764
Q ss_pred HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhc-CCcEEcCCCCchhhhhhccchHHHHH
Q psy6714 236 PALVRQGASVFVRGSSASDQDAQTVINLFKSV-GTCEEVPEYLLDGITGLSGSGPAYRY 293 (303)
Q Consensus 236 p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~i-G~~v~vdE~~~Da~tAlsGsgPAf~~ 293 (303)
--+ -+|..-+.-| -.+++....+-+|=+.. |..+.++...+.-+..++|..-|.+|
T Consensus 203 vpe-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivy 259 (343)
T COG4074 203 VPE-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVY 259 (343)
T ss_pred Ccc-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHH
Confidence 222 2444444433 34777766666665554 56777876665555555444444433
No 188
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.055 Score=53.13 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=34.0
Q ss_pred hcCCCEEEEeeCCccHHHHHHhhccccCC--------CCEEEEecCCCcHH-HHHh
Q psy6714 174 TLNSEVIILAVKPHIVPVALNDIKPVFNE--------SNLLISVAGGVPIK-NMEQ 220 (303)
Q Consensus 174 v~~ADIVILAVpP~~v~~VL~eI~~~L~~--------g~IVVSiaaGV~ie-~L~~ 220 (303)
+.++|+|+++|++.....++..|.+.|.. .-.|+|+.+++... .|++
T Consensus 78 ~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~ 133 (381)
T PRK02318 78 IAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKK 133 (381)
T ss_pred hcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHH
Confidence 34789999999999988887776655432 22688999988763 3443
No 189
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.86 E-value=0.087 Score=50.57 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=46.5
Q ss_pred cEEEEcCChhhHHHHHHHH------------hhcHHH-------H---hh---C-CCeEecChHHhhcCCCEEEEeeC--
Q psy6714 134 DKQIAGTTERGPGALIASL------------NIVSKA-------T---GT---M-GAKITFDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al------------~r~~e~-------l---~e---~-Gv~v~~d~~eav~~ADIVILAVp-- 185 (303)
||+|||+|++|. .++..+ +...++ + .. . .+++..+..+.+++|||||++.-
T Consensus 1 Ki~IIGaG~VG~-~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGS-AVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 799999999999 454331 111110 1 11 1 23444444577899999999872
Q ss_pred --CccH---H-----------HHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 --PHIV---P-----------VALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 --P~~v---~-----------~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|..- . ++.+.+..+- ++.++|-+.++++.-
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~ 125 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIA 125 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHH
Confidence 3222 2 2333444443 556677677887763
No 190
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.86 E-value=0.12 Score=49.86 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHH-----HH------hhCC--CeEe--cChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSK-----AT------GTMG--AKIT--FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e-----~l------~e~G--v~v~--~d~~eav~~ADIVILAVp 185 (303)
++||+|||.|.||.+ ++..+ +...+ .+ ...+ ..+. .|. +.+++||+||++.-
T Consensus 6 ~~KI~IIGaG~vG~~-ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 6 RRKISLIGSGNIGGV-MAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 469999999999984 44321 11111 11 1112 2333 444 57899999999772
Q ss_pred ----Ccc-----------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhCCC-CCceEEEe
Q psy6714 186 ----PHI-----------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQALPK-NSRIIRAM 232 (303)
Q Consensus 186 ----P~~-----------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l~~-~~~VVr~m 232 (303)
+.. +.++++.+.++. ++.++|-..+++++- .+.+..+- ..+++.+.
T Consensus 84 ~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 84 LTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 222 445556666655 444555566766542 34333321 13566555
No 191
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.73 E-value=0.051 Score=54.14 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeE--ecChHHhhcCCCEEEEeeC-CccH--
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKI--TFDNKEVTLNSEVIILAVK-PHIV-- 189 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v--~~d~~eav~~ADIVILAVp-P~~v-- 189 (303)
+..++|+|||+|.||. .++..+ ++..++ ..++|..+ ..+..+.+.++|+||.|++ +..+
T Consensus 180 ~~~~~vlViGaG~iG~-~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGE-LVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred ccCCEEEEECchHHHH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 3467899999999998 344332 122222 23455432 2345567889999999996 3322
Q ss_pred HHHHHhhc-cccCCCCEEEEecC
Q psy6714 190 PVALNDIK-PVFNESNLLISVAG 211 (303)
Q Consensus 190 ~~VL~eI~-~~L~~g~IVVSiaa 211 (303)
.+.++... ..-..+.++|.+..
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCC
Confidence 33443321 10013456666644
No 192
>PRK06046 alanine dehydrogenase; Validated
Probab=94.73 E-value=0.084 Score=50.79 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=44.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh-hCCC--eEecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG-TMGA--KITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~-e~Gv--~v~~d~~eav~~ADIVILAVpP~~v 189 (303)
..+|+|||+|.+|... +..+ ++..++ +. ..|+ .+..+.+++++ +|+|++|+|...
T Consensus 129 ~~~vgiiG~G~qa~~h-~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQ-LLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CCEEEEECCcHHHHHH-HHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 3579999999999832 2221 122221 22 1354 44567788887 999999998653
Q ss_pred HHHHHhhccccCCCCEEEEe
Q psy6714 190 PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...+++++.|.++
T Consensus 206 -P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 206 -PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred -cEec--HHHcCCCCEEEec
Confidence 3332 1235678876544
No 193
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.70 E-value=0.047 Score=43.14 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc------------HHHHh--hCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV------------SKATG--TMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~------------~e~l~--e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~e 195 (303)
..+++|+|+|++|.. +....... .++.- -.|+.+..+..++.+. .|+.|||||+..+.+++.+
T Consensus 3 ~~~v~ivGag~~G~a-~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~ 81 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRA-LLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADE 81 (96)
T ss_dssp TEEEEEETTTSHHHH-HHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHH
T ss_pred CCeEEEECCCCcHHH-HHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHH
Confidence 346999999999994 44321111 11111 1256666566666555 9999999999999999887
Q ss_pred hcc
Q psy6714 196 IKP 198 (303)
Q Consensus 196 I~~ 198 (303)
+..
T Consensus 82 ~~~ 84 (96)
T PF02629_consen 82 LVE 84 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 194
>KOG2305|consensus
Probab=94.67 E-value=0.094 Score=49.02 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred EecChHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 166 ITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
.+++..|+++.+=.|==||| .-.++ .+.+++-..+.+.+|+-|-..-+-...+.+-+-+..+++-+||--|--+ --.
T Consensus 74 ~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyf-iPL 152 (313)
T KOG2305|consen 74 GTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYF-IPL 152 (313)
T ss_pred CCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcc-cch
Confidence 35678899998888888887 33444 3335555545455444344444444555444433346667776443211 111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcC
Q psy6714 244 SVFVRGSSASDQDAQTVINLFKSVGT-CEEVP 274 (303)
Q Consensus 244 til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vd 274 (303)
+=+++.+-.+++.++....|+..+|. ++.+.
T Consensus 153 vElVPaPwTsp~tVdrt~~lM~sigq~pV~l~ 184 (313)
T KOG2305|consen 153 VELVPAPWTSPDTVDRTRALMRSIGQEPVTLK 184 (313)
T ss_pred heeccCCCCChhHHHHHHHHHHHhCCCCcccc
Confidence 23456677788999999999999994 56554
No 195
>PRK06823 ornithine cyclodeaminase; Validated
Probab=94.61 E-value=0.095 Score=50.47 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHH-------HHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSK-------ATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e-------~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
-.+++|||+|..+...+... +++..+ .+++.|+. ++.+.++++++||||+.|++... .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~--P 205 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE--P 205 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--c
Confidence 35799999999997322211 122222 22333553 46788899999999999997553 4
Q ss_pred HHHhhccccCCCCEEEEe
Q psy6714 192 ALNDIKPVFNESNLLISV 209 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSi 209 (303)
+++ .+.+++|+.|+.+
T Consensus 206 ~~~--~~~l~~G~hi~~i 221 (315)
T PRK06823 206 LLQ--AEDIQPGTHITAV 221 (315)
T ss_pred eeC--HHHcCCCcEEEec
Confidence 442 1246688876644
No 196
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.60 E-value=0.063 Score=52.29 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhh--cHH--------------HHh--hCCCeEecChHHh-hcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNI--VSK--------------ATG--TMGAKITFDNKEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r--~~e--------------~l~--e~Gv~v~~d~~ea-v~~ADIVILAVpP~~v~ 190 (303)
..+||+||| +|..|. .|...+.. .+. .+. ...+.+. +..+. ..++|+||+|+|.....
T Consensus 3 ~~~~vaIvGATG~vG~-ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGE-ALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASA 80 (336)
T ss_pred CCCEEEEEccCCHHHH-HHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHH
Confidence 368999999 799999 46655433 110 010 0112222 32222 36899999999988777
Q ss_pred HHHHhhccccCCCCEEEEecCCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
+++..+.. .|..||+..+..
T Consensus 81 ~~~~~~~~---~g~~VIDlS~~f 100 (336)
T PRK08040 81 AYAEEATN---AGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---CCCEEEECChHh
Confidence 88776643 577888776533
No 197
>KOG2666|consensus
Probab=94.53 E-value=0.28 Score=47.92 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=40.5
Q ss_pred eEecChHHhhcCCCEEEEeeC-Ccc--------------HHHHHHhhccccCCCCEEE--EecCCCc-HHHHHhhCCCCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVK-PHI--------------VPVALNDIKPVFNESNLLI--SVAGGVP-IKNMEQALPKNS 226 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp-P~~--------------v~~VL~eI~~~L~~g~IVV--SiaaGV~-ie~L~~~l~~~~ 226 (303)
-..+|.+..++++|+||++|. |.- +++...-|.+.-...+||| |++ ++. .+.++..|..+.
T Consensus 67 ffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstv-pv~aaesi~~il~~n~ 145 (481)
T KOG2666|consen 67 FFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTV-PVKAAESIEKILNHNS 145 (481)
T ss_pred eeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccc-cchHHHHHHHHHhcCC
Confidence 346788889999999999994 432 3444455666555778877 443 333 356777775333
Q ss_pred ceE
Q psy6714 227 RII 229 (303)
Q Consensus 227 ~VV 229 (303)
+.+
T Consensus 146 ~~i 148 (481)
T KOG2666|consen 146 KGI 148 (481)
T ss_pred CCc
Confidence 333
No 198
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.50 E-value=0.15 Score=49.58 Aligned_cols=41 Identities=5% Similarity=0.148 Sum_probs=26.2
Q ss_pred ChHHhh--cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 169 DNKEVT--LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 169 d~~eav--~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
+..+++ .++||||=++.++...+++..+ +..++-||+...|
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 344555 4789999999877666666554 3356666655443
No 199
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.49 E-value=0.086 Score=51.32 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=47.9
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHH-------HHhhC-C--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSK-------ATGTM-G--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e-------~l~e~-G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
..++|||+|.++. .-+..+ .+..+ .+.+. + +..+.+.+++++.||||+.|++...
T Consensus 131 ~~laiIGaG~qA~-~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 131 STLAIIGAGAQAR-TQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred cEEEEECCcHHHH-HHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4699999999998 333221 12222 23333 3 3566788999999999999998776
Q ss_pred HHHHhhccccCCCCEEEEecCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaG 212 (303)
.+++ .+++++++.|. .+++
T Consensus 208 Pil~--~~~l~~G~hI~-aiGa 226 (330)
T COG2423 208 PVLK--AEWLKPGTHIN-AIGA 226 (330)
T ss_pred Ceec--HhhcCCCcEEE-ecCC
Confidence 4442 23466787654 4443
No 200
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.41 E-value=0.073 Score=52.53 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc-H--------------HHHhhC-C--CeEec-ChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV-S--------------KATGTM-G--AKITF-DNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~-~--------------e~l~e~-G--v~v~~-d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||+|+||| +|..|..++-+.+... . .+...+ | ..+.. ...+.+.++|+||+|++.....+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 57999999 7999995332232211 0 011111 1 12222 22344578999999999888888
Q ss_pred HHHhhccccCCC--CEEEEecC
Q psy6714 192 ALNDIKPVFNES--NLLISVAG 211 (303)
Q Consensus 192 VL~eI~~~L~~g--~IVVSiaa 211 (303)
+...+.. .| .+||+..+
T Consensus 81 ~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 81 VYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred HHHHHHh---CCCCeEEEECCh
Confidence 8776643 45 45776654
No 201
>KOG0068|consensus
Probab=94.38 E-value=0.11 Score=50.89 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~-eI~ 197 (303)
.+++||||+|.||+ .+++.++- ..+.+..+|++. .+.+|++..||+|-|=+| -...+.++. +-.
T Consensus 146 GKTLgvlG~GrIGs-eVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tf 223 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGS-EVAVRAKAMGMHVIGYDPITPMALAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETF 223 (406)
T ss_pred ccEEEEeecccchH-HHHHHHHhcCceEEeecCCCchHHHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHH
Confidence 36899999999999 57665331 224566788876 567889999999988887 444555552 222
Q ss_pred cccCCCCEEEEec-CCC-cHHHHHhhCC
Q psy6714 198 PVFNESNLLISVA-GGV-PIKNMEQALP 223 (303)
Q Consensus 198 ~~L~~g~IVVSia-aGV-~ie~L~~~l~ 223 (303)
..+++|.-||.++ +|+ +...|-+.+.
T Consensus 224 A~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 224 AKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred HHhhCCcEEEEecCCceechHHHHHHHh
Confidence 2356788888776 343 4445555443
No 202
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=94.34 E-value=0.058 Score=51.69 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=38.8
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcH-------HHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVS-------KATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~-------e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
..+++|||+|..+...+... +++.. +.+.++|+ ..+.+.++++++||||+.|++......
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P 207 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP 207 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence 34799999999998322211 12222 22333455 456788999999999999998665212
Q ss_pred HHHhhccccCCCCEEEEe
Q psy6714 192 ALNDIKPVFNESNLLISV 209 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSi 209 (303)
++. ...+++|+.|+++
T Consensus 208 ~~~--~~~l~~g~hi~~i 223 (313)
T PF02423_consen 208 VFD--AEWLKPGTHINAI 223 (313)
T ss_dssp SB---GGGS-TT-EEEE-
T ss_pred ccc--HHHcCCCcEEEEe
Confidence 322 2346688766544
No 203
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.22 E-value=0.16 Score=51.83 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=49.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
+..++++|||+|.||.+ ++..++ .... .....|+.+ .+..++++.+|+||+|+-... ++ .+
T Consensus 252 LaGKtVgVIG~G~IGr~-vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~---iI~~e 326 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKG-CAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD---IITLE 326 (476)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc---ccCHH
Confidence 34678999999999994 554422 1111 122357654 467788999999999985333 22 12
Q ss_pred hccccCCCCEEEEecCC
Q psy6714 196 IKPVFNESNLLISVAGG 212 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG 212 (303)
....++++.+||.+.-+
T Consensus 327 ~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHhccCCCcEEEEcCCC
Confidence 33345678888866444
No 204
>PRK05442 malate dehydrogenase; Provisional
Probab=94.10 E-value=0.29 Score=47.46 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=33.6
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Cc------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PH------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+.+..+..+.+++|||||++-- |. .+.++.++|..+..++.+||-+.+++++-
T Consensus 68 ~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 136 (326)
T PRK05442 68 VVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTN 136 (326)
T ss_pred cEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHH
Confidence 3444555677899999999873 22 13445556666554466666677777753
No 205
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.98 E-value=0.13 Score=49.72 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=46.9
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH----H----------HhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK----A----------TGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e----~----------l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
+|||+||| .|..|. .|+..+.. ... . +.-.|. .+.....+.++++|+||+|++.....++
T Consensus 1 ~~~V~IvGAtG~vG~-~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGR-EMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHH
Confidence 57999998 899998 56655433 111 0 100121 2211122335789999999998888888
Q ss_pred HHhhccccCCCCEEEEecC
Q psy6714 193 LNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaa 211 (303)
+..+.. .|..||++.+
T Consensus 80 ~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 80 APKAAA---AGAVVIDNSS 95 (334)
T ss_pred HHHHHh---CCCEEEECCc
Confidence 776543 5667886654
No 206
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=93.92 E-value=0.14 Score=48.90 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=46.3
Q ss_pred CCcEEEEcCChhhHHHHHH-H----------HhhcHH-------HHhh-CCC--eEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIA-S----------LNIVSK-------ATGT-MGA--KITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~-a----------l~r~~e-------~l~e-~Gv--~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
-.+++|||+|..|...+.. . ++++.+ .+.+ .|+ .++.+.++++.+||||+.|++...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 3579999999999832211 1 122222 2222 354 456789999999999999998553
Q ss_pred HHHHhhccccCCCCEEEEecC
Q psy6714 191 VALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaa 211 (303)
.++. ..++++++.|. .++
T Consensus 195 P~~~--~~~l~pg~hV~-aiG 212 (301)
T PRK06407 195 PIFN--RKYLGDEYHVN-LAG 212 (301)
T ss_pred cEec--HHHcCCCceEE-ecC
Confidence 3432 12456776654 444
No 207
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.88 E-value=0.26 Score=45.68 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=39.6
Q ss_pred EecChHHhhcCCCEEEEeeCC----------------ccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCC
Q psy6714 166 ITFDNKEVTLNSEVIILAVKP----------------HIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKN 225 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP----------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~ 225 (303)
.++|..+.+++||+||++.-. ..+.++++++..+. ++.++|-..++++.- .+.+. ++.
T Consensus 60 ~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg~~~- 137 (263)
T cd00650 60 ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSGLPK- 137 (263)
T ss_pred ECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhCCCc-
Confidence 345557889999999996622 23556666676655 556666667777653 34444 342
Q ss_pred CceEEEe
Q psy6714 226 SRIIRAM 232 (303)
Q Consensus 226 ~~VVr~m 232 (303)
.+++.+-
T Consensus 138 ~kviG~~ 144 (263)
T cd00650 138 EKVIGLG 144 (263)
T ss_pred hhEEEee
Confidence 3555554
No 208
>PLN00203 glutamyl-tRNA reductase
Probab=93.70 E-value=0.17 Score=52.07 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=49.8
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---Hh-hC-CCe----EecChHHhhcCCCEEEEeeC---C
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA---TG-TM-GAK----ITFDNKEVTLNSEVIILAVK---P 186 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l~-e~-Gv~----v~~d~~eav~~ADIVILAVp---P 186 (303)
+...+|+|||+|.||.. ++..+ ++..++ +. ++ |.. ...+..+++.++|+||.|++ |
T Consensus 264 l~~kkVlVIGAG~mG~~-~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 264 HASARVLVIGAGKMGKL-LVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCEEEEEeCHHHHHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 44678999999999994 44332 222222 22 23 332 12455678899999999973 5
Q ss_pred ccHHHHHHhhcccc---CCCCEEEEecCCCc
Q psy6714 187 HIVPVALNDIKPVF---NESNLLISVAGGVP 214 (303)
Q Consensus 187 ~~v~~VL~eI~~~L---~~g~IVVSiaaGV~ 214 (303)
....+.++.+.+.- ....+||.++-+=+
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 55667777654211 11247777654433
No 209
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.59 E-value=0.52 Score=47.18 Aligned_cols=85 Identities=11% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI~ 197 (303)
..+++|+|+|.+|. .++..++ .+.. .+...|+.+ .+.+++++.+|+||.++.... ++. +..
T Consensus 195 Gk~VvViG~G~IG~-~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~---vI~~~~~ 269 (406)
T TIGR00936 195 GKTVVVAGYGWCGK-GIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKD---VIRGEHF 269 (406)
T ss_pred cCEEEEECCCHHHH-HHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHH---HHHHHHH
Confidence 56899999999999 4554432 1121 223457755 355778899999999886433 332 233
Q ss_pred cccCCCCEEEEecC---CCcHHHHHhh
Q psy6714 198 PVFNESNLLISVAG---GVPIKNMEQA 221 (303)
Q Consensus 198 ~~L~~g~IVVSiaa---GV~ie~L~~~ 221 (303)
..++++.+|+...- .++.+.|.+.
T Consensus 270 ~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 270 ENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred hcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 45667877775432 1455556543
No 210
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.55 E-value=0.15 Score=48.21 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHhhcCCCEEEEeeC-C---c------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK-P---H------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P---~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||+++. | . .+.+++++|..+. ++.++|-..+++++
T Consensus 61 ~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di 120 (300)
T cd01339 61 YEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDV 120 (300)
T ss_pred HHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 456899999999883 1 1 1345666676655 44455556666654
No 211
>PRK05086 malate dehydrogenase; Provisional
Probab=93.42 E-value=0.25 Score=47.37 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh-------------hcHH------HHhhCC--CeEe----cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGT-TERGPGALIASLN-------------IVSK------ATGTMG--AKIT----FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~-------------r~~e------~l~e~G--v~v~----~d~~eav~~ADIVILAVp- 185 (303)
|||+|||. |.+|. .++..+. +... .+...+ ..+. .+..+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~-aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQ-ALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHH-HHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 79999998 99999 4553321 1110 011111 1221 343577889999999983
Q ss_pred ---Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+. .+.++++.+..+ .++.+|+-..+++++
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~ 123 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNT 123 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHH
Confidence 22 344555556554 356677778888865
No 212
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.41 E-value=0.29 Score=47.28 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=31.9
Q ss_pred eEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+.+++|||||++-- |. . +.++..+|..+-.++.+||-+.++++.-
T Consensus 67 ~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~ 134 (322)
T cd01338 67 VITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN 134 (322)
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHH
Confidence 344555677899999999872 22 1 3444555665543355666566777653
No 213
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.39 E-value=0.33 Score=48.82 Aligned_cols=85 Identities=11% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI 196 (303)
...+++|+|+|.||. .++..++ ....+ +...|+.+ .+..++++.+|+||.|+.... ++. +.
T Consensus 211 ~Gk~VlViG~G~IG~-~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~---vI~~~~ 285 (425)
T PRK05476 211 AGKVVVVAGYGDVGK-GCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKD---VITAEH 285 (425)
T ss_pred CCCEEEEECCCHHHH-HHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHH---HHHHHH
Confidence 357899999999998 4554322 12222 23447764 466788899999999985433 332 23
Q ss_pred ccccCCCCEEEEec---CCCcHHHHHh
Q psy6714 197 KPVFNESNLLISVA---GGVPIKNMEQ 220 (303)
Q Consensus 197 ~~~L~~g~IVVSia---aGV~ie~L~~ 220 (303)
...++++.+++..- .-++...|++
T Consensus 286 ~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 286 MEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 33466777776432 1234455554
No 214
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.39 E-value=0.23 Score=48.29 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
.+.+.++|+||+|++.....++++.+.. .+..||+..+
T Consensus 71 ~~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 71 PEAVDDVDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred HHHhcCCCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 3445789999999999877777765543 4566776654
No 215
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.31 E-value=0.25 Score=47.83 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=46.2
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHh------------hcH--HHHhh-----CCCeE--ecCh---HHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLN------------IVS--KATGT-----MGAKI--TFDN---KEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~------------r~~--e~l~e-----~Gv~v--~~d~---~eav~~ADIVILAVp 185 (303)
.|.||+|||+ |++|. .++..+. ... ....+ ....+ .++. .+.+++||+||++.-
T Consensus 7 ~~~KI~IiGaaG~VGs-~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQ-PLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCEEEEECCCCHHHH-HHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 5779999998 99999 4554321 100 00001 01222 2221 578899999999882
Q ss_pred -Ccc---------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PHI---------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|.. +.++++.+..+ ..+.+|+-..++++.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 221 12233344443 345677767777765
No 216
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.20 E-value=0.32 Score=48.45 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---H-hhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKA---T-GTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l-~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
...+++|||+|.||. .++..+ ++..++ + ..+|... ..+..+++.++|+||.|++
T Consensus 179 ~~~~VlViGaG~iG~-~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 179 KGKKALLIGAGEMGE-LVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred cCCEEEEECChHHHH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC
Confidence 457899999999998 444432 122222 2 2445432 2345677889999999995
No 217
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.17 E-value=0.23 Score=47.85 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=47.2
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh------------hcHH-----HHhh--CCCeEe---cC--hHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGT-TERGPGALIASLN------------IVSK-----ATGT--MGAKIT---FD--NKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~------------r~~e-----~l~e--~Gv~v~---~d--~~eav~~ADIVILAVp-- 185 (303)
|||+|||+ |++|. .++..+- .... .+.. ....+. .+ ..+.+++||+||++.-
T Consensus 1 ~KI~IIGaaG~VG~-~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQ-PLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHH-HHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 79999999 99999 4554321 1110 0111 112222 22 2577899999999872
Q ss_pred --Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|.. +.++.+.|.++ .++.+||-..+++++
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 322 22333445554 367778888888865
No 218
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.13 E-value=0.32 Score=47.04 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=48.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-h-----------hcHHHH-------------hhCCCeEec-ChHHhhcCCCEEEEee--
Q psy6714 133 SDKQIAGTTERGPGALIASL-N-----------IVSKAT-------------GTMGAKITF-DNKEVTLNSEVIILAV-- 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-~-----------r~~e~l-------------~e~Gv~v~~-d~~eav~~ADIVILAV-- 184 (303)
|||+|||.|.+|. .++..+ . ...+.+ ......+.. ..-+.++++|+|||+-
T Consensus 1 ~KVaviGaG~VG~-s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGAGNVGS-SLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CeEEEECCChHHH-HHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence 6899999999999 455442 1 111110 011233333 2346688999999988
Q ss_pred --CCc------------cHHHHHHhhccccCCCCEEEEecCCCcHHH
Q psy6714 185 --KPH------------IVPVALNDIKPVFNESNLLISVAGGVPIKN 217 (303)
Q Consensus 185 --pP~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~ 217 (303)
||- .+.++.+++..+- ++.+|+-+.+++++-.
T Consensus 80 prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~t 125 (313)
T COG0039 80 PRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILT 125 (313)
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHH
Confidence 344 1233444555544 4556666778887643
No 219
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.11 E-value=0.31 Score=46.33 Aligned_cols=44 Identities=11% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHhhcCCCEEEEeeC-Cc-c--------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK-PH-I--------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P~-~--------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||++.. |. . +.++.+.|..+- ++.+||-..+++++
T Consensus 61 ~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~ 120 (300)
T cd00300 61 YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDI 120 (300)
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHH
Confidence 567899999999994 22 1 445555666554 55566656666654
No 220
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=93.10 E-value=0.5 Score=47.69 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=41.0
Q ss_pred eEecChHHhhcCCCEEEEeeCCcc------------------------------------HHHHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHI------------------------------------VPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~------------------------------------v~~VL~eI~~~L~~g~IVVS 208 (303)
..++|..+++++||+||..+..-. +.++++.|..+ .++.++|.
T Consensus 63 ~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin 141 (437)
T cd05298 63 VYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILN 141 (437)
T ss_pred EEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEE
Confidence 456888999999999999986443 22334444443 36677788
Q ss_pred ecCCCcH--HHHHhhCCCCCceEE
Q psy6714 209 VAGGVPI--KNMEQALPKNSRIIR 230 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VVr 230 (303)
.++++.. ..+.+.++. .+++.
T Consensus 142 ~tNP~~~vt~~~~~~~~~-~kviG 164 (437)
T cd05298 142 YSNPAAIVAEALRRLFPN-ARILN 164 (437)
T ss_pred ecCcHHHHHHHHHHHCCC-CCEEE
Confidence 8887765 344545553 34443
No 221
>PRK08291 ectoine utilization protein EutC; Validated
Probab=93.07 E-value=0.21 Score=48.15 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=43.7
Q ss_pred CCcEEEEcCChhhHHHHH-HH----------HhhcHHH---H----h-hCCCe--EecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALI-AS----------LNIVSKA---T----G-TMGAK--ITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La-~a----------l~r~~e~---l----~-e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
.++|+|||+|.+|...+. .. ++++.++ + . ++|+. ...+.++++.++|+||.|++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-- 209 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-- 209 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC--
Confidence 468999999999983221 11 1222222 2 1 23554 35677888999999999998653
Q ss_pred HHHHhhccccCCCCEEEE
Q psy6714 191 VALNDIKPVFNESNLLIS 208 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVS 208 (303)
.++.. ..+++++.|..
T Consensus 210 p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 210 PILKA--EWLHPGLHVTA 225 (330)
T ss_pred cEecH--HHcCCCceEEe
Confidence 33321 12456665543
No 222
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.86 E-value=0.22 Score=47.97 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=44.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh-hCCCeE--ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG-TMGAKI--TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~-e~Gv~v--~~d~~eav~~ADIVILAVpP~~v 189 (303)
..+++|||+|.+|.. .+..+ +++.++ +. .+|+.+ ..+.++++.+||+||.|++...
T Consensus 129 ~~~v~iiGaG~qA~~-~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 129 SSVVAIFGAGMQARL-QLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CcEEEEECCCHHHHH-HHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 457999999999973 22221 222222 21 235543 5677888999999999998643
Q ss_pred HHHHHhhccccCCCCEEEEe
Q psy6714 190 PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...++++++|..+
T Consensus 207 -p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 207 -PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred -cEec--HHHcCCCcEEEee
Confidence 3332 1235677766543
No 223
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.85 E-value=2 Score=43.13 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=60.1
Q ss_pred cChHHhhcCCCEEEEeeCCccHHHHHHhhccc-cCCCCEEEEecCCCcHHHH-HhhC---CCCCceEEEecCcHH-----
Q psy6714 168 FDNKEVTLNSEVIILAVKPHIVPVALNDIKPV-FNESNLLISVAGGVPIKNM-EQAL---PKNSRIIRAMPNTPA----- 237 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~-L~~g~IVVSiaaGV~ie~L-~~~l---~~~~~VVr~mPn~p~----- 237 (303)
.+.+++..+=|.+||||+.++..+||++|... |+.=+.||=++......-| +..+ ..+..|+.+-.-...
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 45667777889999999999999999987432 3222233312222222221 2222 223444444211110
Q ss_pred -----h-hhCC--cEEEEeCCCCCHHHHHHHHHHHHhcCCcE-EcC
Q psy6714 238 -----L-VRQG--ASVFVRGSSASDQDAQTVINLFKSVGTCE-EVP 274 (303)
Q Consensus 238 -----~-v~~G--~til~~g~~~~~e~~e~V~~Lfs~iG~~v-~vd 274 (303)
. +-.| .-++.+..+.+.....++..+|+.+|..+ .++
T Consensus 155 ~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 155 GEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 0 0111 12444555667788899999999999754 444
No 224
>PLN02494 adenosylhomocysteinase
Probab=92.81 E-value=0.43 Score=48.68 Aligned_cols=84 Identities=10% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccH--HHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIV--PVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI 196 (303)
..+++|+|+|.||. .++..++ .... .....|+.+ .+..++++.+|+||.++....+ .+.+.
T Consensus 254 GKtVvViGyG~IGr-~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~tTGt~~vI~~e~L~-- 329 (477)
T PLN02494 254 GKVAVICGYGDVGK-GCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVTTTGNKDIIMVDHMR-- 329 (477)
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEECCCCccchHHHHHh--
Confidence 57899999999999 4554432 1221 233557765 3567888999999998764443 33443
Q ss_pred ccccCCCCEEEEecC---CCcHHHHHhh
Q psy6714 197 KPVFNESNLLISVAG---GVPIKNMEQA 221 (303)
Q Consensus 197 ~~~L~~g~IVVSiaa---GV~ie~L~~~ 221 (303)
.++++.+|+.+.- -|+...|.+.
T Consensus 330 --~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 330 --KMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred --cCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 3557778876543 2445566654
No 225
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.79 E-value=0.39 Score=48.17 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
...++.|||.|-||. ..+..+ |++.+++ .++|+.+ ..+..+.+.++||||.|+-
T Consensus 177 ~~~~vlvIGAGem~~-lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGE-LVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHH-HHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 457899999999998 455442 4444443 4667543 3455678899999999984
No 226
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.76 E-value=0.27 Score=49.14 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH---------------------HHhh---CCCeEecChHHhhc--CCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK---------------------ATGT---MGAKITFDNKEVTL--NSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e---------------------~l~e---~Gv~v~~d~~eav~--~ADIVILAVp 185 (303)
++||||||+|.||.+ ++..+.+..+ +... .+..++.|..++++ +.|+|+.|+.
T Consensus 3 ~i~VgiiG~G~VG~~-~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGLGTVGSG-VVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEeeCHHHHH-HHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 478999999999995 4443322211 1111 12234566777775 4699999986
Q ss_pred CccH-HHHHHhhccccCCCCEEEEe
Q psy6714 186 PHIV-PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 186 P~~v-~~VL~eI~~~L~~g~IVVSi 209 (303)
+... .+.+. ..+..|+-||+.
T Consensus 82 ~~~~~~~~~~---~aL~~GkhVVta 103 (426)
T PRK06349 82 GIEPARELIL---KALEAGKHVVTA 103 (426)
T ss_pred CchHHHHHHH---HHHHCCCeEEEc
Confidence 5322 23332 334466667754
No 227
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.69 E-value=0.11 Score=46.98 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-------------hhcHHHHh--hCCCeE--ecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-------------NIVSKATG--TMGAKI--TFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-------------~r~~e~l~--e~Gv~v--~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
++-++.|||.|++|.+ |+... +...+..- -.++.+ .++.+..++ +.|+.|||||.....+
T Consensus 83 ~~tnviiVG~GnlG~A-ll~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~ 161 (211)
T COG2344 83 KTTNVIIVGVGNLGRA-LLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQE 161 (211)
T ss_pred cceeEEEEccChHHHH-HhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHH
Confidence 4668999999999994 55431 11112110 112332 234445555 7899999999888887
Q ss_pred HHHhhc
Q psy6714 192 ALNDIK 197 (303)
Q Consensus 192 VL~eI~ 197 (303)
+++.|.
T Consensus 162 vad~Lv 167 (211)
T COG2344 162 VADRLV 167 (211)
T ss_pred HHHHHH
Confidence 776653
No 228
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.67 E-value=0.55 Score=47.55 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHHH--HHhhCCC-
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIKN--MEQALPK- 224 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~--L~~~l~~- 224 (303)
+.+..+..+.+++|||||++-- |.. +.++.+.|..+..++.+||-+.+++++-. +.+..+.
T Consensus 164 v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~ 243 (444)
T PLN00112 164 VSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNI 243 (444)
T ss_pred eEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCC
Confidence 4444566678999999999872 221 34455556663345666666777777643 2232211
Q ss_pred CCceEEEecC
Q psy6714 225 NSRIIRAMPN 234 (303)
Q Consensus 225 ~~~VVr~mPn 234 (303)
..+++.+...
T Consensus 244 ~~rViGtgT~ 253 (444)
T PLN00112 244 PAKNFHALTR 253 (444)
T ss_pred CcceEEeecc
Confidence 1356665544
No 229
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.62 E-value=0.26 Score=43.37 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=43.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES 203 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g 203 (303)
+...+|.|||.|.|.+..++.. +.+.|+.+ . .+..+.+.++|+||.|+....+ +-.+ .++++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~-------L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~i--i~~~---~~~~~ 109 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAAL-------LLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGL--VKGD---MVKPG 109 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHH-------HhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCce--ecHH---HccCC
Confidence 4568999999999844234433 33344322 1 3455678999999999975433 1122 24456
Q ss_pred CEEEEecCC
Q psy6714 204 NLLISVAGG 212 (303)
Q Consensus 204 ~IVVSiaaG 212 (303)
.+||.+...
T Consensus 110 ~viIDla~p 118 (168)
T cd01080 110 AVVIDVGIN 118 (168)
T ss_pred eEEEEccCC
Confidence 778866443
No 230
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.61 E-value=0.27 Score=47.00 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHhhcCCCEEEEeeC-Cc----c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 171 KEVTLNSEVIILAVK-PH----I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P~----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+.+++||+||+|+- |. . +.++++.|..+. ++.+||-..+.++.-
T Consensus 67 ~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~ 127 (309)
T cd05294 67 LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVM 127 (309)
T ss_pred HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHH
Confidence 456899999999994 11 1 344455566554 444556566766653
No 231
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.38 E-value=0.63 Score=46.66 Aligned_cols=73 Identities=10% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI~ 197 (303)
..+++|+|.|.||. .++..++ .. .+.+...|+.+. +..++++.+|+||.|+.... ++. ...
T Consensus 202 GktVvViG~G~IG~-~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~i~~~~l 276 (413)
T cd00401 202 GKVAVVAGYGDVGK-GCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---IITGEHF 276 (413)
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---HHHHHHH
Confidence 56899999999998 3443322 11 123456788643 45678889999999986433 222 223
Q ss_pred cccCCCCEEEEe
Q psy6714 198 PVFNESNLLISV 209 (303)
Q Consensus 198 ~~L~~g~IVVSi 209 (303)
..++++.+|+.+
T Consensus 277 ~~mk~Ggilvnv 288 (413)
T cd00401 277 EQMKDGAIVCNI 288 (413)
T ss_pred hcCCCCcEEEEe
Confidence 346677777644
No 232
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.36 E-value=0.37 Score=46.68 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=32.7
Q ss_pred eEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+.+++|||||++-- |.. +.++.++|..+-.++.+||-..++++.-
T Consensus 68 ~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 135 (323)
T TIGR01759 68 VATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN 135 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH
Confidence 344455677899999999872 221 3445556666543366666677777653
No 233
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.35 E-value=0.67 Score=46.44 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=57.9
Q ss_pred CcEEEEcCChhhHHHHHHH---------------Hhhc-HHHH-----------hhCC----CeEecChHHhhcCCCEEE
Q psy6714 133 SDKQIAGTTERGPGALIAS---------------LNIV-SKAT-----------GTMG----AKITFDNKEVTLNSEVII 181 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------------l~r~-~e~l-----------~e~G----v~v~~d~~eav~~ADIVI 181 (303)
|||.|||.|..-++.|... ++.+ .+++ ++.| +..++|..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 7999999998766434332 1222 3332 2334 245678899999999999
Q ss_pred EeeCCc------------------------------------cHHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCC
Q psy6714 182 LAVKPH------------------------------------IVPVALNDIKPVFNESNLLISVAGGVPI--KNMEQALP 223 (303)
Q Consensus 182 LAVpP~------------------------------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~ 223 (303)
.+...- .+.++++.+.++ .++.++|..++++.+ ..+.+..+
T Consensus 81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~a~~k~~~ 159 (419)
T cd05296 81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTEAVLRHTG 159 (419)
T ss_pred EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHHHHhcc
Confidence 998422 122333444443 367778888887765 34444442
Q ss_pred CCCceEEE
Q psy6714 224 KNSRIIRA 231 (303)
Q Consensus 224 ~~~~VVr~ 231 (303)
.+++.+
T Consensus 160 --~rviGl 165 (419)
T cd05296 160 --DRVIGL 165 (419)
T ss_pred --CCEEee
Confidence 355555
No 234
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.22 E-value=0.4 Score=45.83 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=44.4
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|.+ |.+ |+..+ ...|.++ +.+..+.+++||+||.+++ |..+.. +.++
T Consensus 156 l~Gk~vvViGrs~iVGkP-la~lL-------~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~------~~ik 221 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKP-MAMLL-------LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA------DMVK 221 (285)
T ss_pred CCCCEEEEECCCCccHHH-HHHHH-------HHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH------HHcC
Confidence 34678999998887 886 44332 2234433 2356678999999999996 443322 4567
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 222 ~gavVIDV 229 (285)
T PRK14189 222 PGATVIDV 229 (285)
T ss_pred CCCEEEEc
Confidence 88888865
No 235
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.12 E-value=0.67 Score=40.80 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHHH---HhhCCCeEecChHHhhcCCCEEEEeeCCccH--HHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSKA---TGTMGAKITFDNKEVTLNSEVIILAVKPHIV--PVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI 196 (303)
.+++.|+|.|.+|.+ ++..++. ++-+ +...|+.+ .+..+++..+|++|.++-...+ .+-+.+
T Consensus 23 Gk~vvV~GYG~vG~g-~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~~~- 99 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKG-IARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDVITGEHFRQ- 99 (162)
T ss_dssp TSEEEEE--SHHHHH-HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHHHH-
T ss_pred CCEEEEeCCCcccHH-HHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccccCHHHHHH-
Confidence 468999999999995 6665432 2222 23458876 4678899999999999965543 344555
Q ss_pred ccccCCCCEEEEecCCC----cHHHHHhh
Q psy6714 197 KPVFNESNLLISVAGGV----PIKNMEQA 221 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV----~ie~L~~~ 221 (303)
++++.+|. -++.. +++.|++.
T Consensus 100 ---mkdgail~-n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 100 ---MKDGAILA-NAGHFDVEIDVDALEAN 124 (162)
T ss_dssp ---S-TTEEEE-ESSSSTTSBTHHHHHTC
T ss_pred ---hcCCeEEe-ccCcCceeEeecccccc
Confidence 44666554 44443 44566554
No 236
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.52 Score=44.61 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH------------H--------HH---hhCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS------------K--------AT---GTMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~------------e--------~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+|||+|.|. |.||. .+........ . .+ ...|+.+..+...+..++|++|=-+.|.
T Consensus 2 ~iki~V~Ga~GRMG~-~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGR-TLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred CceEEEEcCCChHHH-HHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch
Confidence 789999995 99999 5666533211 0 11 2345666666666778999999999898
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
...+.++-...+ +-.+|| -..|.+-+.++.
T Consensus 81 ~~~~~l~~~~~~--~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 81 ATLENLEFALEH--GKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred hhHHHHHHHHHc--CCCeEE-ECCCCCHHHHHH
Confidence 888887654432 223555 445787765544
No 237
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.05 E-value=0.4 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=33.8
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+.+..+..+.+++|||||++-- |. . +.++.+.|..+-+++.+||-+.+++++-
T Consensus 108 v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~ 176 (387)
T TIGR01757 108 VSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTN 176 (387)
T ss_pred eEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHH
Confidence 4445566678999999999762 22 2 3444455666554666666677777764
No 238
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.04 E-value=0.59 Score=35.96 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=35.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhC-CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEE
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTM-GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVS 208 (303)
+..++++|+|.|.+|.+ ++..+ .+. +.++.-.+. |++|-|++...+..-- .+. .++++.+|+.
T Consensus 21 ~~~~~v~i~G~G~~g~~-~a~~l-------~~~~~~~v~v~~r------di~i~~~~~~~~~~~~-~~~-~~~~~~~v~~ 84 (86)
T cd05191 21 LKGKTVVVLGAGEVGKG-IAKLL-------ADEGGKKVVLCDR------DILVTATPAGVPVLEE-ATA-KINEGAVVID 84 (86)
T ss_pred CCCCEEEEECCCHHHHH-HHHHH-------HHcCCCEEEEEcC------CEEEEcCCCCCCchHH-HHH-hcCCCCEEEe
Confidence 34678999999999994 43332 222 222211111 9999999754433210 122 2346777775
Q ss_pred e
Q psy6714 209 V 209 (303)
Q Consensus 209 i 209 (303)
+
T Consensus 85 ~ 85 (86)
T cd05191 85 L 85 (86)
T ss_pred c
Confidence 4
No 239
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.91 E-value=0.8 Score=41.88 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=46.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHHHH----h-hCCCeEe---cCh----HHh-hcCCCEEEEeeCCccH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSKAT----G-TMGAKIT---FDN----KEV-TLNSEVIILAVKPHIV 189 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e~l----~-e~Gv~v~---~d~----~ea-v~~ADIVILAVpP~~v 189 (303)
|+|.|||+|.+|. .++..+.. +.++. . +.+..+. .+. .++ +.++|+++.++..+.+
T Consensus 1 m~iiIiG~G~vG~-~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGR-SVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHH-HHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 7899999999999 57765422 22222 2 2333221 222 233 5689999999999888
Q ss_pred HHHHHhhccc-cCCCCEEE
Q psy6714 190 PVALNDIKPV-FNESNLLI 207 (303)
Q Consensus 190 ~~VL~eI~~~-L~~g~IVV 207 (303)
..++..+... +.-..+|.
T Consensus 80 N~i~~~la~~~~gv~~via 98 (225)
T COG0569 80 NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 8888776533 43334444
No 240
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.87 E-value=0.31 Score=47.57 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=44.9
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh-cHH---------------HHhhCC---CeEec--ChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI-VSK---------------ATGTMG---AKITF--DNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r-~~e---------------~l~e~G---v~v~~--d~~eav~~ADIVILAVpP~~v 189 (303)
+++|||+| +|.+|.- |...+.+ ... +..+++ +.+.. ......+++|++|.|.+...-
T Consensus 1 ~~~VavvGATG~VG~~-~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQV-LLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHH-HHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 47899998 9999994 4433322 210 111111 11212 122345689999999987777
Q ss_pred HHHHHhhccccCCCCEEEEec
Q psy6714 190 PVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSia 210 (303)
+++...+.. .|.+||+-+
T Consensus 80 ~~~~p~~~~---~G~~VIdns 97 (334)
T COG0136 80 KEVEPKAAE---AGCVVIDNS 97 (334)
T ss_pred HHHHHHHHH---cCCEEEeCC
Confidence 777776653 566777543
No 241
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.65 E-value=0.38 Score=48.13 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---H-hhCC-CeE--ecChHHhhcCCCEEEEeeC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA---T-GTMG-AKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l-~e~G-v~v--~~d~~eav~~ADIVILAVp 185 (303)
+..+||.|||+|.||. .++..+ +++.++ + .++| ..+ ..+..+.+.++|+||.|+.
T Consensus 179 l~~kkvlviGaG~~a~-~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~ 251 (414)
T PRK13940 179 ISSKNVLIIGAGQTGE-LLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVN 251 (414)
T ss_pred ccCCEEEEEcCcHHHH-HHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcC
Confidence 4567899999999999 444432 233332 2 2344 332 2444677889999999996
No 242
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=91.64 E-value=0.15 Score=45.93 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
..+|+|||+|.+|. .++..
T Consensus 84 ~~rV~IIGaG~iG~-~l~~~ 102 (213)
T PRK05472 84 TWNVALVGAGNLGR-ALLNY 102 (213)
T ss_pred CcEEEEECCCHHHH-HHHHh
Confidence 35799999999999 56543
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.30 E-value=0.71 Score=45.54 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=39.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHH---HHhh-CCCeEe-c---C---hHHh-hcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSK---ATGT-MGAKIT-F---D---NKEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e-~Gv~v~-~---d---~~ea-v~~ADIVILAVpP~~v~ 190 (303)
|+|.|+|.|.+|. .++..+.. ..+ .+.+ .|+.+. . + ..++ ++++|.||++++.....
T Consensus 1 m~viIiG~G~ig~-~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGY-TLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence 7899999999999 56665321 222 2333 455432 1 1 1233 67899999999887776
Q ss_pred HHHHhh
Q psy6714 191 VALNDI 196 (303)
Q Consensus 191 ~VL~eI 196 (303)
.++...
T Consensus 80 ~~~~~~ 85 (453)
T PRK09496 80 MVACQI 85 (453)
T ss_pred HHHHHH
Confidence 655333
No 244
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=91.23 E-value=2.2 Score=42.88 Aligned_cols=66 Identities=6% Similarity=0.139 Sum_probs=43.1
Q ss_pred eEecChHHhhcCCCEEEEeeCCccHH------------------------------------HHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHIVP------------------------------------VALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~v~------------------------------------~VL~eI~~~L~~g~IVVS 208 (303)
..++|.++++++||+||..+..-..+ ++++.|..+ .++.++|.
T Consensus 63 ~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin 141 (425)
T cd05197 63 EKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLN 141 (425)
T ss_pred EEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEe
Confidence 45788999999999999998644332 333444443 36777888
Q ss_pred ecCCCcH--HHHHhhCCCCCceEEEe
Q psy6714 209 VAGGVPI--KNMEQALPKNSRIIRAM 232 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VVr~m 232 (303)
.++++.+ ..+.+.++. .+++.+-
T Consensus 142 ~TNP~di~t~a~~~~~p~-~rviG~c 166 (425)
T cd05197 142 FTNPAGEVTEAVRRYVPP-EKAVGLC 166 (425)
T ss_pred cCChHHHHHHHHHHhCCC-CcEEEEC
Confidence 8887765 345555542 4565553
No 245
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=90.89 E-value=0.66 Score=44.91 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=26.4
Q ss_pred HhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 172 EVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 172 eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
+...++|+||+|+|.....++...+.. .|..||...+
T Consensus 69 ~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 69 VASKDVDIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred HHhccCCEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 345789999999999988877765533 4555665543
No 246
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.65 E-value=0.72 Score=44.03 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=44.4
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+++ |.++..+.+ ..+.++ + .+..+.+++|||||.|| +|..+. .+.++
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~--------~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~------~d~vk 219 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLL--------NANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIK------ADMVK 219 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHH--------hCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccc------ccccc
Confidence 34678999998866 555333222 234433 2 46778899999999999 577665 44567
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 220 ~gavVIDV 227 (283)
T COG0190 220 PGAVVIDV 227 (283)
T ss_pred CCCEEEec
Confidence 88888754
No 247
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=2.8 Score=41.41 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----------HHHhhCCC---eEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----------KATGTMGA---KITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----------e~l~e~Gv---~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..+|+|||+|.+|. ++++.+++.. ..+...+. ....+...+.+++|+||++.....-.+.+++.
T Consensus 3 ~~~i~iiGlG~~G~-slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A 79 (418)
T PRK00683 3 LQRVVVLGLGVTGK-SIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAA 79 (418)
T ss_pred CCeEEEEEECHHHH-HHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHH
Confidence 35799999999999 5776654321 00000000 01122233346789888887544445555444
No 248
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.40 E-value=0.5 Score=39.53 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=35.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHHHh----hC---CCe--EecChHHhhcCCCEEEEeeCCc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKATG----TM---GAK--ITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l~----e~---Gv~--v~~d~~eav~~ADIVILAVpP~ 187 (303)
+...++.|||.|.||.+ ++..+ +|+.+++. .+ .+. ...+..+.+.++|+||-|++..
T Consensus 10 l~~~~vlviGaGg~ar~-v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARA-VAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp GTTSEEEEESSSHHHHH-HHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred cCCCEEEEECCHHHHHH-HHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 45688999999999994 44332 33333322 22 232 2345556788999999999743
No 249
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.35 E-value=1.8 Score=42.36 Aligned_cols=83 Identities=10% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH----HhhCCCeEecChHHhhcCCCEEEEeeCC----ccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA----TGTMGAKITFDNKEVTLNSEVIILAVKP----HIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP----~~v~ 190 (303)
..||||||+ .||. ..+..+.. ..++ .+++|+....|.++++++.|+++++++. ..=.
T Consensus 3 ~~rVgViG~-~~G~-~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~ 80 (343)
T TIGR01761 3 VQSVVVCGT-RFGQ-FYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS 80 (343)
T ss_pred CcEEEEEeH-HHHH-HHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH
Confidence 578999999 6786 34433221 1122 3467887778899999888999998852 2323
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
++.... +..|+-|+ +-..+..++.++
T Consensus 81 e~a~~a---L~aGkHVL-~EKPla~~Ea~e 106 (343)
T TIGR01761 81 ALARAL---LARGIHVL-QEHPLHPRDIQD 106 (343)
T ss_pred HHHHHH---HhCCCeEE-EcCCCCHHHHHH
Confidence 444333 33555555 334444444444
No 250
>PLN00106 malate dehydrogenase
Probab=90.21 E-value=0.71 Score=44.73 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=45.6
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh------------hcH--H---HHhh--CCCeEe-----cChHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGT-TERGPGALIASLN------------IVS--K---ATGT--MGAKIT-----FDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~------------r~~--e---~l~e--~Gv~v~-----~d~~eav~~ADIVILAVp-- 185 (303)
.||+|||+ |++|. .++..+- ... . .+.. ....+. ++..+++++||+||++--
T Consensus 19 ~KV~IiGaaG~VG~-~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQ-PLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHH-HHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 58999998 99999 4554321 111 0 0100 011221 223678999999999872
Q ss_pred --C-ccHHHHH-----------HhhccccCCCCEEEEecCCCc
Q psy6714 186 --P-HIVPVAL-----------NDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 186 --P-~~v~~VL-----------~eI~~~L~~g~IVVSiaaGV~ 214 (303)
| ..-.+++ +.+..+- ++.+||-..++++
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 2 1233333 3344332 5667787888887
No 251
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.07 E-value=0.84 Score=44.00 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||++.- |. . +.++.+.|..+ .++.+||-+.++++.
T Consensus 62 ~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred HHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 578999999999873 21 1 22333445544 367778888888874
No 252
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=90.03 E-value=0.74 Score=44.94 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=17.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP 186 (303)
+.+..+..+++.++|+|+.|++.
T Consensus 63 l~v~g~~eeLl~~vDiVve~Tp~ 85 (333)
T TIGR01546 63 IEVAGTLEDLLEKVDIVVDATPG 85 (333)
T ss_pred eEecCCHHHHhhcCCEEEECCCC
Confidence 33445678888999999999974
No 253
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.97 E-value=0.61 Score=45.30 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=45.8
Q ss_pred cEEEEc-CChhhHHHHHHHHhh--cHH-H-------------HhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 134 DKQIAG-TTERGPGALIASLNI--VSK-A-------------TGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r--~~e-~-------------l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||+||| .|..|. .|+..+.. ... . +...|.. +..-..+.++++|+||+|++...-.+++.
T Consensus 1 ~VaIvGAtG~vG~-eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQ-EMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHH-HHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHH
Confidence 689999 999999 56655433 111 0 1111221 11112344588999999999998888877
Q ss_pred hhccccCCCCEEEEecC
Q psy6714 195 DIKPVFNESNLLISVAG 211 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaa 211 (303)
.+.. .|..||+..+
T Consensus 80 ~~~~---~G~~VID~ss 93 (339)
T TIGR01296 80 KAAK---CGAIVIDNTS 93 (339)
T ss_pred HHHH---CCCEEEECCH
Confidence 6543 5667786654
No 254
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.91 E-value=5.9 Score=39.07 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=63.6
Q ss_pred cChHHhhcCCCEEEEeeCCccHHHHHHhhcc-ccC--CCCEEEEecCCCc--HHHHHhhCCCCCceEEE-----------
Q psy6714 168 FDNKEVTLNSEVIILAVKPHIVPVALNDIKP-VFN--ESNLLISVAGGVP--IKNMEQALPKNSRIIRA----------- 231 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVpP~~v~~VL~eI~~-~L~--~g~IVVSiaaGV~--ie~L~~~l~~~~~VVr~----------- 231 (303)
.+.+++..+=|-+|+||+.++.-+|+++|-- .|+ +..++||-.=|.. ++.+-..++.+..|+.+
T Consensus 77 kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id 156 (431)
T COG4408 77 KDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYID 156 (431)
T ss_pred hhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeec
Confidence 4677788889999999999999999988632 222 3345555433333 23332223323334333
Q ss_pred --ecCcHH--hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 232 --MPNTPA--LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 232 --mPn~p~--~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
-||+.- ++.+. ++.+....+....+.+..+|...|..+++
T Consensus 157 ~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~ 200 (431)
T COG4408 157 AEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEP 200 (431)
T ss_pred ccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEE
Confidence 144432 23332 44455566677788999999999986554
No 255
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=89.89 E-value=1.2 Score=42.75 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=54.4
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc--HH------H--H-hhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV--SK------A--T-GTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~--~e------~--l-~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~eI~ 197 (303)
+.||.|.| +|.+|. .+...+.+. .. + . .-.|+.+..+..|+-+. .|++|++||+..+.+++++..
T Consensus 8 ~~~~~v~~~~~~~g~-~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~ 86 (291)
T PRK05678 8 DTKVIVQGITGKQGT-FHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAI 86 (291)
T ss_pred CCeEEEeCCCchHHH-HHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHH
Confidence 56899999 688998 454443321 10 1 1 12366677777787776 899999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .- +.+|=+.+|...+
T Consensus 87 ~~-gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 87 DA-GI-DLIVCITEGIPVL 103 (291)
T ss_pred HC-CC-CEEEEECCCCCHH
Confidence 42 11 2333366777654
No 256
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.79 E-value=0.79 Score=44.30 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=32.0
Q ss_pred eEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+..+..+.+++||+||++-- |. . ++++..+|.++-+++.+||-+.+++++
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 131 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT 131 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence 333456678999999999762 22 2 445555666653355566656777765
No 257
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.67 E-value=0.9 Score=43.44 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=43.2
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|. +|.+ ++..+. ..|.++ + .+..+.+++||+||.||. |..+.. +.++
T Consensus 156 l~Gk~vvVIGrs~~VG~p-la~lL~-------~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~------~~vk 221 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQP-VSKLLL-------QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTK------DVVK 221 (286)
T ss_pred CCCCEEEEECCCchhHHH-HHHHHH-------HCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCH------HHcC
Confidence 3457899999988 9985 544322 233332 2 345678899999999996 443322 2356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 222 ~gavVIDv 229 (286)
T PRK14175 222 EGAVIIDV 229 (286)
T ss_pred CCcEEEEc
Confidence 78888865
No 258
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.58 E-value=1.4 Score=37.62 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=44.7
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--ec----ChHHhhcCCCEEEEeeCCccHHHHHHhhccccCC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--TF----DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~~----d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~ 202 (303)
+..++|.|+|-+. .|.+ |+..+ .+.|+++ +. +.++.+++||||+.++....+ ++ .+.+++
T Consensus 26 ~~gk~v~VvGrs~~vG~p-la~lL-------~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp 92 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAP-LQCLL-------QRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK---VP--TEWIKP 92 (140)
T ss_pred CCCCEEEEECCCchHHHH-HHHHH-------HHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc---cC--HHHcCC
Confidence 4567899999654 4553 44332 2345543 33 667889999999999953332 21 234678
Q ss_pred CCEEEEecCCCcH
Q psy6714 203 SNLLISVAGGVPI 215 (303)
Q Consensus 203 g~IVVSiaaGV~i 215 (303)
|.+|++. |+..
T Consensus 93 Ga~Vidv--g~~~ 103 (140)
T cd05212 93 GATVINC--SPTK 103 (140)
T ss_pred CCEEEEc--CCCc
Confidence 9888854 4444
No 259
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.13 E-value=1.1 Score=42.82 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=44.3
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-|. +|.+ |+..+. ..|.++ +.+..+.+++|||||.++ +|..+.. ++++
T Consensus 157 l~Gk~vvViGrs~iVG~P-la~lL~-------~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~------~~vk 222 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRP-MSLELL-------LAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPG------EWIK 222 (285)
T ss_pred CCCCEEEEECCCcccHHH-HHHHHH-------HCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccH------HHcC
Confidence 3457899999887 7886 443322 233432 234667899999999999 4664432 3466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 223 ~gavVIDv 230 (285)
T PRK10792 223 PGAIVIDV 230 (285)
T ss_pred CCcEEEEc
Confidence 88888865
No 260
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.12 E-value=1 Score=40.47 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...||+|||+|.||..
T Consensus 19 L~~~~V~IvG~GglGs~ 35 (200)
T TIGR02354 19 LEQATVAICGLGGLGSN 35 (200)
T ss_pred HhCCcEEEECcCHHHHH
Confidence 45678999999999984
No 261
>PRK06392 homoserine dehydrogenase; Provisional
Probab=88.78 E-value=1 Score=43.72 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~ 153 (303)
|||+|||+|++|.+ ++..+.
T Consensus 1 mrVaIiGfG~VG~~-va~~L~ 20 (326)
T PRK06392 1 IRISIIGLGNVGLN-VLRIIK 20 (326)
T ss_pred CEEEEECCCHHHHH-HHHHHH
Confidence 68999999999994 665543
No 262
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=88.65 E-value=0.52 Score=38.71 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=52.9
Q ss_pred CcEEEEc----CChhhHHHHHHHHhhcH-H------HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcccc
Q psy6714 133 SDKQIAG----TTERGPGALIASLNIVS-K------ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVF 200 (303)
Q Consensus 133 mkIgIIG----lG~MG~~~La~al~r~~-e------~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L 200 (303)
++|+||| -+..|. .+...+.+.. + +.. -.|..+..+..|.-...|+++++++++.+.++++++...
T Consensus 1 ksiAVvGaS~~~~~~g~-~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~- 78 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGY-RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL- 78 (116)
T ss_dssp -EEEEET--SSTTSHHH-HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHH-HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-
Confidence 3699999 567776 4444433321 1 011 135666677777437899999999999999999998753
Q ss_pred CCCCEEEEecCCCcHHHHHhhCCCCCceEEEe-cCcH
Q psy6714 201 NESNLLISVAGGVPIKNMEQALPKNSRIIRAM-PNTP 236 (303)
Q Consensus 201 ~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~m-Pn~p 236 (303)
.-+.+| +..|...+++.+.+.. .-++++ ||..
T Consensus 79 g~~~v~--~~~g~~~~~~~~~a~~--~gi~vigp~C~ 111 (116)
T PF13380_consen 79 GVKAVW--LQPGAESEELIEAARE--AGIRVIGPNCL 111 (116)
T ss_dssp T-SEEE--E-TTS--HHHHHHHHH--TT-EEEESS-H
T ss_pred CCCEEE--EEcchHHHHHHHHHHH--cCCEEEeCCcc
Confidence 334444 3445555556555432 224444 6643
No 263
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.63 E-value=0.8 Score=45.64 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=46.4
Q ss_pred CCcEEEEcCChhhHHHHHHH-H----------hhcHHH---HhhC---CCeEe-------cChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIAS-L----------NIVSKA---TGTM---GAKIT-------FDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-l----------~r~~e~---l~e~---Gv~v~-------~d~~eav~~ADIVILAVpP~ 187 (303)
||||-|||+|.+|.. .+.. . ++..++ +.+. +++.. ....+++++.|+||-|.|+.
T Consensus 1 m~~ilviGaG~Vg~~-va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSV-VAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389)
T ss_pred CCcEEEECCchhHHH-HHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence 689999999999994 3322 1 222222 2222 23211 12347788999999999988
Q ss_pred cHHHHHHhhccccCCCCEEEEecC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
.-..+++... +.+.-+|.++.
T Consensus 80 ~~~~i~ka~i---~~gv~yvDts~ 100 (389)
T COG1748 80 VDLTILKACI---KTGVDYVDTSY 100 (389)
T ss_pred hhHHHHHHHH---HhCCCEEEccc
Confidence 8877775432 23444554443
No 264
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=88.51 E-value=1.5 Score=38.42 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=38.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.+++ .+.++.+++|||||.++. |..+. .+.++
T Consensus 34 l~Gk~v~VvGrs~~VG~P-la~lL~-------~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~------~~~ik 99 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKP-LAMLLL-------NKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIK------ADWIK 99 (160)
T ss_dssp TTT-EEEEE-TTTTTHHH-HHHHHH-------HTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-------GGGS-
T ss_pred CCCCEEEEECCcCCCChH-HHHHHH-------hCCCeEEeccCCCCcccceeeeccEEeeeeccccccc------ccccc
Confidence 346789999976 57886 443322 2355432 456788999999999995 55432 23467
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 100 ~gavVIDv 107 (160)
T PF02882_consen 100 PGAVVIDV 107 (160)
T ss_dssp TTEEEEE-
T ss_pred CCcEEEec
Confidence 88888854
No 265
>PRK06199 ornithine cyclodeaminase; Validated
Probab=88.34 E-value=0.8 Score=45.30 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=44.3
Q ss_pred CCcEEEEcCChhhHHHHHHH------------HhhcHH-------HHhh-C-C---CeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIAS------------LNIVSK-------ATGT-M-G---AKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a------------l~r~~e-------~l~e-~-G---v~v~~d~~eav~~ADIVILAVpP~ 187 (303)
-.+++|||+|.++...+... ++++.+ .+.+ + | +.++.+.++++++||||+.|++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 35799999999998322111 112222 2222 2 2 456788999999999999999632
Q ss_pred c----HHHHHHhhccccCCCCEEE
Q psy6714 188 I----VPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 188 ~----v~~VL~eI~~~L~~g~IVV 207 (303)
. ...++. ...+++|+.|+
T Consensus 235 ~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 235 TGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred CCCCCcCcEec--HHHcCCCcEEe
Confidence 2 123332 12456787665
No 266
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=88.17 E-value=1.2 Score=40.48 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHH---------HHHHhhcc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVP---------VALNDIKP 198 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~---------~VL~eI~~ 198 (303)
||||+|| |.|+++. +... ++..|+. +..+. +.++++|.||++=+ .... .++..|..
T Consensus 1 ~~~v~iid~~~GN~~s--l~~a-------l~~~g~~v~vv~~~-~~l~~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~ 69 (210)
T CHL00188 1 MMKIGIIDYSMGNLHS--VSRA-------IQQAGQQPCIINSE-SELAQVHALVLPGV-GSFDLAMKKLEKKGLITPIKK 69 (210)
T ss_pred CcEEEEEEcCCccHHH--HHHH-------HHHcCCcEEEEcCH-HHhhhCCEEEECCC-CchHHHHHHHHHCCHHHHHHH
Confidence 6899999 7778866 4333 3344543 33443 44678999987542 2222 12233455
Q ss_pred ccCCCCEEEEecCCCcH
Q psy6714 199 VFNESNLLISVAGGVPI 215 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~i 215 (303)
.+..+..|+-++.|..+
T Consensus 70 ~~~~~~pvlGIClG~Ql 86 (210)
T CHL00188 70 WIAEGNPFIGICLGLHL 86 (210)
T ss_pred HHHcCCCEEEECHHHHH
Confidence 55566778888877744
No 267
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=88.11 E-value=0.87 Score=45.02 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=42.9
Q ss_pred CcEEEEc-CChhhHHHHHHHH-hhcHH----------H-------HhhCCCeEec-ChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIASL-NIVSK----------A-------TGTMGAKITF-DNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al-~r~~e----------~-------l~e~Gv~v~~-d~~eav~~ADIVILAVpP~~v~~V 192 (303)
|+||||| +|.+|..++-+.. .+... + +......+.. ++.+.+.+.|++|+|.+....+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 5799999 7999995444232 11111 0 0011112221 222357789999999988877766
Q ss_pred HHhhccccCCC--CEEEEec
Q psy6714 193 LNDIKPVFNES--NLLISVA 210 (303)
Q Consensus 193 L~eI~~~L~~g--~IVVSia 210 (303)
...+.. .| .+||+-+
T Consensus 81 ~p~~~~---aG~~~~VIDnS 97 (366)
T TIGR01745 81 YPKLRE---SGWQGYWIDAA 97 (366)
T ss_pred HHHHHh---CCCCeEEEECC
Confidence 655543 45 5666543
No 268
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.02 E-value=1.1 Score=42.85 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=31.5
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.+..+.-+.+++||+||++.- |.. +.++.+.+..+ .++.+||-..+++++
T Consensus 52 ~~i~~~~~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~ 118 (299)
T TIGR01771 52 KKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDI 118 (299)
T ss_pred eEEecCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHH
Confidence 3454455678899999999873 211 33444556554 355566667676654
No 269
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=87.71 E-value=1.5 Score=42.49 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=30.2
Q ss_pred ChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 169 DNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 169 d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+..+.+++||+||++-- +.. +.++.++|..+-+++.+||-..+++++-
T Consensus 68 ~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~ 131 (324)
T TIGR01758 68 DPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTN 131 (324)
T ss_pred ChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH
Confidence 44577899999999872 222 3344455665433555666677877763
No 270
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.45 E-value=0.73 Score=41.28 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=36.4
Q ss_pred cEEEEcCChhhHHHHHHH-H--------------hhcHHH-----------HhhCCC----eEecChHHhhcCCCEEEEe
Q psy6714 134 DKQIAGTTERGPGALIAS-L--------------NIVSKA-----------TGTMGA----KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~a-l--------------~r~~e~-----------l~e~Gv----~v~~d~~eav~~ADIVILA 183 (303)
||+|||.|..-.+.+... + +.+.++ +++.|. ..++|..+++++||+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999998877543332 1 111121 123333 4578889999999999999
Q ss_pred eCCccHHHHH
Q psy6714 184 VKPHIVPVAL 193 (303)
Q Consensus 184 VpP~~v~~VL 193 (303)
+.+-..+...
T Consensus 81 irvGg~~~r~ 90 (183)
T PF02056_consen 81 IRVGGLEARE 90 (183)
T ss_dssp --TTHHHHHH
T ss_pred eeecchHHHH
Confidence 9876655443
No 271
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=87.33 E-value=0.83 Score=45.99 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=51.9
Q ss_pred CcEEEEcC----ChhhHHHHHHHHhhcH--H-------HH-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGT----TERGPGALIASLNIVS--K-------AT-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGl----G~MG~~~La~al~r~~--e-------~l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.+|+|||. |.+|. .+...+.+.. . +. .-.|+.+..+..++-...|+++++||++.+.++++++..
T Consensus 8 ~siavvGaS~~~~~~g~-~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~ 86 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGY-AIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGE 86 (447)
T ss_pred CEEEEEccCCCCCchHH-HHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHh
Confidence 56999998 78888 5554433211 0 11 124667777777777788999999999999999998765
Q ss_pred ccCCCCEEEEecCCC
Q psy6714 199 VFNESNLLISVAGGV 213 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV 213 (303)
. +-..+|| +.+|.
T Consensus 87 ~-gv~~~vi-~s~gf 99 (447)
T TIGR02717 87 K-GVKGAVV-ITAGF 99 (447)
T ss_pred c-CCCEEEE-ECCCc
Confidence 2 2233433 44454
No 272
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.32 E-value=2.7 Score=46.87 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=38.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------------------cHHH---Hh-hC-CC---eE-ecChHHh---hc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------------------VSKA---TG-TM-GA---KI-TFDNKEV---TL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------------------~~e~---l~-e~-Gv---~v-~~d~~ea---v~ 175 (303)
++||+|||+|.||. ..+..+.+ ..+. +. .. ++ .+ ..|.+++ ++
T Consensus 569 ~~rIlVLGAG~VG~-~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCR-PAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHH-HHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 56899999999998 34433211 0112 21 22 43 23 3444443 36
Q ss_pred CCCEEEEeeCCccHHHHHHhh
Q psy6714 176 NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI 196 (303)
++|+||.|+|+..-..++...
T Consensus 648 ~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHH
Confidence 899999999987666666543
No 273
>KOG2741|consensus
Probab=87.17 E-value=2.7 Score=41.30 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHH----HHhhCCC---eEecChHHhhcCC--CEEEEeeC-Cc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSK----ATGTMGA---KITFDNKEVTLNS--EVIILAVK-PH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e----~l~e~Gv---~v~~d~~eav~~A--DIVILAVp-P~ 187 (303)
-.++||+|+|.|+. -+++.+.. ..+ -++.+++ ++..+.++++++. |+|.++.+ |+
T Consensus 6 ~ir~Gi~g~g~ia~-~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 6 TIRWGIVGAGRIAR-DFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQ 84 (351)
T ss_pred eeEEEEeehhHHHH-HHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCcc
Confidence 35799999999999 46654321 112 2345566 5677888988765 99999997 77
Q ss_pred cHHHHHH
Q psy6714 188 IVPVALN 194 (303)
Q Consensus 188 ~v~~VL~ 194 (303)
+.+-+..
T Consensus 85 H~evv~l 91 (351)
T KOG2741|consen 85 HYEVVML 91 (351)
T ss_pred HHHHHHH
Confidence 7765543
No 274
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.93 E-value=1.8 Score=41.74 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=29.4
Q ss_pred cChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 168 FDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+.+++||+||++-- +.. +.++...|..+..++.++|-..++++.-
T Consensus 70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~ 134 (325)
T cd01336 70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN 134 (325)
T ss_pred CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHH
Confidence 444577899999999872 222 1334445555543455566566777653
No 275
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.82 E-value=2.4 Score=40.61 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-|. +|.+ |+..+. ..|.++ +.+..+.+++|||||.|+ +|..+. .+.+++
T Consensus 163 ~Gk~vvViGrs~iVGkP-la~lL~-------~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~------~~~vk~ 228 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKP-MAAMLL-------NRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIK------ADMVKE 228 (287)
T ss_pred CCCEEEEECCCcccHHH-HHHHHH-------HCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccC------HHHcCC
Confidence 457899999887 7886 443322 234432 235677889999999999 566442 124668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 229 gavVIDv 235 (287)
T PRK14176 229 GAVIFDV 235 (287)
T ss_pred CcEEEEe
Confidence 8888865
No 276
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=86.77 E-value=2.3 Score=40.64 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc---------HH--HHhhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV---------SK--ATGTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~---------~e--~l~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~eI~ 197 (303)
+.||.|.| +|.+|. .+...+..+ +. .-.-.|+.+..+..|+-+. .|++|++||+..+.+++++..
T Consensus 6 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~ 84 (286)
T TIGR01019 6 DTKVIVQGITGSQGS-FHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAI 84 (286)
T ss_pred CCcEEEecCCcHHHH-HHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHH
Confidence 45799999 899998 454332211 11 1112466777777777665 799999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .-. .+|=+.+|....
T Consensus 85 ~~-Gvk-~avIis~Gf~e~ 101 (286)
T TIGR01019 85 DA-GIE-LIVCITEGIPVH 101 (286)
T ss_pred HC-CCC-EEEEECCCCCHH
Confidence 42 112 333366777543
No 277
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.41 E-value=2.5 Score=34.94 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.+.++++|+||.|+........+.++.
T Consensus 87 ~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 87 EELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp HHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCHHHHHHHHHHH
Confidence 356678899988887766666665543
No 278
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=86.33 E-value=2.1 Score=38.94 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=32.9
Q ss_pred CcEEEEc-CChhhHHHHHHHHhh---------cHHHHhh-CCCeEe-------cChHHhhcCCCEEEEeeCC
Q psy6714 133 SDKQIAG-TTERGPGALIASLNI---------VSKATGT-MGAKIT-------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r---------~~e~l~e-~Gv~v~-------~d~~eav~~ADIVILAVpP 186 (303)
|||+||| .|..|...+..++++ +..++.+ .++.+. +...+.+..-|+||.++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 8999999 899999433334333 2233333 344321 1223567788999999853
No 279
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=86.00 E-value=1.8 Score=34.82 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred cCChhhHHHHHHHHhhcHHH------------------H--hhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhh
Q psy6714 139 GTTERGPGALIASLNIVSKA------------------T--GTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 139 GlG~MG~~~La~al~r~~e~------------------l--~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI 196 (303)
|+|.||. .|+..+.+.... . ...+.....+..++++ +.||||=|..++.+.+.+..+
T Consensus 1 G~G~VG~-~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGR-GLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHH-HHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999 576655433321 0 0112345567777777 789999998777777666554
Q ss_pred ccccCCCCEEEEecC
Q psy6714 197 KPVFNESNLLISVAG 211 (303)
Q Consensus 197 ~~~L~~g~IVVSiaa 211 (303)
|..|.-||+...
T Consensus 80 ---L~~G~~VVt~nk 91 (117)
T PF03447_consen 80 ---LERGKHVVTANK 91 (117)
T ss_dssp ---HHTTCEEEES-H
T ss_pred ---HHCCCeEEEECH
Confidence 335666775543
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.93 E-value=2.7 Score=40.01 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=41.8
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|. .|.+ ++..+ .+.|+++ + .+..+.++++|+||-|+. |..+. .+.++
T Consensus 157 l~Gk~vvViG~gg~vGkp-ia~~L-------~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~------~~~lk 222 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKP-MAMML-------LNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIK------KDWIK 222 (283)
T ss_pred CCCCEEEEECCcHHHHHH-HHHHH-------HhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCC------HHHcC
Confidence 3467899999998 8985 44332 2233332 2 345567889999999994 44221 12356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+|+.+
T Consensus 223 ~gavViDv 230 (283)
T PRK14192 223 QGAVVVDA 230 (283)
T ss_pred CCCEEEEE
Confidence 78887754
No 281
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.85 E-value=9.9 Score=38.02 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEe-cChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKIT-FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~-~d~~eav~~ADIVILAV 184 (303)
+++|.|||+|..|-+.+++.+.. ..+.+.+.|+.+. ....+.++++|+||++-
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 56899999999998435654321 1123455677653 22334456788888775
No 282
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.73 E-value=3.9 Score=40.19 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hh-hCCCeEe------cChHHhhcCCCEEEEeeC------
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TG-TMGAKIT------FDNKEVTLNSEVIILAVK------ 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~-e~Gv~v~------~d~~eav~~ADIVILAVp------ 185 (303)
..++.|||.|.+|.. .+..+ ++..++ +. .+|..+. .+..+.+.++|+||.|++
T Consensus 167 ~~~VlViGaG~vG~~-aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 167 PGDVTIIGGGVVGTN-AAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CceEEEEcCCHHHHH-HHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 356999999999984 33322 222222 22 3343221 223566789999999983
Q ss_pred Cc-cHHHHHHhhccccCCCCEEEEec
Q psy6714 186 PH-IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 186 P~-~v~~VL~eI~~~L~~g~IVVSia 210 (303)
|. ...+.++. ++++.+||.+.
T Consensus 246 p~lit~~~l~~----mk~g~vIvDva 267 (370)
T TIGR00518 246 PKLVSNSLVAQ----MKPGAVIVDVA 267 (370)
T ss_pred CcCcCHHHHhc----CCCCCEEEEEe
Confidence 11 12344433 45677787654
No 283
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.60 E-value=2.5 Score=40.48 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=42.9
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-| .+|.+ ++..+ .+.|.++ + .+..+.+++|||||.|+. |..+. .++++
T Consensus 155 l~Gk~vvVvGrs~~VG~P-la~lL-------~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~------~~~vk 220 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKP-LAMLM-------LNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIK------ASMVK 220 (285)
T ss_pred CCCCEEEEECCCchhHHH-HHHHH-------HHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCC------HHHcC
Confidence 346789999988 78886 43332 2334433 2 234567899999999995 55432 12356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 221 ~GavVIDv 228 (285)
T PRK14191 221 KGAVVVDI 228 (285)
T ss_pred CCcEEEEe
Confidence 88888865
No 284
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=85.47 E-value=1.5 Score=40.78 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHH-------hhCCCeEecChHH-hhcCCCEEEEeeCCcc---HH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKAT-------GTMGAKITFDNKE-VTLNSEVIILAVKPHI---VP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l-------~e~Gv~v~~d~~e-av~~ADIVILAVpP~~---v~ 190 (303)
.+++.|+|.|.||.+ ++..+ ++..++. ...|.....+..+ ...++|+||-|++... +.
T Consensus 117 ~k~vliiGaGg~g~a-ia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~ 195 (270)
T TIGR00507 117 NQRVLIIGAGGAARA-VALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID 195 (270)
T ss_pred CCEEEEEcCcHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence 567999999999984 44332 2222221 1223222222222 3357999999998532 21
Q ss_pred HHHHhhccccCCCCEEEEecC-CCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 191 VALNDIKPVFNESNLLISVAG-GVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaa-GV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
++.-. ...++++.+|+.++- ..... |.+.... ..+.++....+.+.|+
T Consensus 196 ~~~~~-~~~l~~~~~v~D~~y~p~~T~-ll~~A~~--~G~~~vdG~~Ml~~Qa 244 (270)
T TIGR00507 196 EPPVP-AEKLKEGMVVYDMVYNPGETP-FLAEAKS--LGTKTIDGLGMLVAQA 244 (270)
T ss_pred CCCCC-HHHcCCCCEEEEeccCCCCCH-HHHHHHH--CCCeeeCCHHHHHHHH
Confidence 11000 123557778886642 22232 3332221 1234555566666655
No 285
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.41 E-value=3.1 Score=39.86 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=42.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.+++ .+..+.+++|||||.|+ +|..+. .++++
T Consensus 155 l~Gk~vvVvGrS~iVGkP-la~lL~-------~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~------~~~vk 220 (284)
T PRK14170 155 IEGKRAVVIGRSNIVGKP-VAQLLL-------NENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK------KDYIK 220 (284)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcC
Confidence 346789999955 55765 443322 2344432 35677899999999999 466432 22456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 221 ~GavVIDv 228 (284)
T PRK14170 221 PGAIVIDV 228 (284)
T ss_pred CCCEEEEc
Confidence 88888864
No 286
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.39 E-value=2.5 Score=43.61 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=22.4
Q ss_pred HhhcCCCEEEEee-----CCc--cHHHHHHhhccccCCCCEEEEec
Q psy6714 172 EVTLNSEVIILAV-----KPH--IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 172 eav~~ADIVILAV-----pP~--~v~~VL~eI~~~L~~g~IVVSia 210 (303)
+.++++||||-|+ |.. ..++.++ .+++|.+||.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~----~MKpGsvIVDlA 284 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVD----SMKAGSVIVDLA 284 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHh----hCCCCCEEEEee
Confidence 4467899999999 321 2334433 455788888654
No 287
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=85.21 E-value=3 Score=37.90 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=24.5
Q ss_pred hHHhhcCCCEEEEeeC-Ccc-HHHHHHhhccccCCCCEEEEe
Q psy6714 170 NKEVTLNSEVIILAVK-PHI-VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 170 ~~eav~~ADIVILAVp-P~~-v~~VL~eI~~~L~~g~IVVSi 209 (303)
..+.+++|||||.|+. |.. +. .+.+++|.+||.+
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~------~d~ik~GavVIDV 155 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVP------TELLKDGAICINF 155 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccC------HHHcCCCcEEEEc
Confidence 4577899999999995 554 22 2235688888865
No 288
>PRK06153 hypothetical protein; Provisional
Probab=85.20 E-value=2 Score=42.93 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=28.7
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.+.+.++|+||.|+.....+.++.+.... .+..+|+.--++.+
T Consensus 260 n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~ 303 (393)
T PRK06153 260 NVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL 303 (393)
T ss_pred HHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence 345678999999999877777777554321 34556665334433
No 289
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.11 E-value=3.6 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred cCCCcEEEEcCChhhHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALI 149 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La 149 (303)
+...||.|||+|.+|. .++
T Consensus 19 l~~~~VlviG~GglGs-~ia 37 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGS-PAA 37 (202)
T ss_pred hcCCCEEEECCCHHHH-HHH
Confidence 5567999999999999 444
No 290
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.11 E-value=3.2 Score=39.92 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=42.6
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+ ...|+++ + .+..+.+++|||||.|| +|..+. .++++
T Consensus 156 l~Gk~vvVIGrS~iVGkP-la~lL-------~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~ik 221 (297)
T PRK14186 156 IAGKKAVVVGRSILVGKP-LALML-------LAANATVTIAHSRTQDLASITREADILVAAAGRPNLIG------AEMVK 221 (297)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 3457899999 4566776 33332 1234443 2 35677889999999999 465432 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (297)
T PRK14186 222 PGAVVVDV 229 (297)
T ss_pred CCCEEEEe
Confidence 88888865
No 291
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.87 E-value=2.2 Score=43.22 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCcEEEEcCChhhHHHHHHH-Hh--------------hcH----------HHH-hhCCC----eEecChHHhhcCCCEEE
Q psy6714 132 RSDKQIAGTTERGPGALIAS-LN--------------IVS----------KAT-GTMGA----KITFDNKEVTLNSEVII 181 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-l~--------------r~~----------e~l-~e~Gv----~v~~d~~eav~~ADIVI 181 (303)
++||+|||.|..+.+-+... +. ... +++ ++.|. ..++|..+++++||+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 57899999999997544332 11 011 112 23443 34678899999999999
Q ss_pred EeeCCccHH
Q psy6714 182 LAVKPHIVP 190 (303)
Q Consensus 182 LAVpP~~v~ 190 (303)
.++.+-.++
T Consensus 83 ~~~rvG~l~ 91 (442)
T COG1486 83 TQIRVGGLE 91 (442)
T ss_pred EEEeeCCcc
Confidence 999876665
No 292
>PRK06813 homoserine dehydrogenase; Validated
Probab=84.80 E-value=2.7 Score=41.16 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=19.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKAT 159 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l 159 (303)
+++|+|+|+|++|.+ ++..+.+..+.+
T Consensus 2 ~i~I~liG~G~VG~~-~~~~L~~~~~~l 28 (346)
T PRK06813 2 KIKVVLSGYGTVGRE-FIKLLNEKYLYI 28 (346)
T ss_pred eeEEEEEecChhHHH-HHHHHHHhHHHH
Confidence 478999999999994 666655444433
No 293
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.74 E-value=16 Score=36.63 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------c--------HHHHhhCCCeEec--ChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------V--------SKATGTMGAKITF--DNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~--------~e~l~e~Gv~v~~--d~~eav~~ADIVILAV 184 (303)
..+||+|+|+|..|. .++..+.. . .+.+.+.|+.+.. +..+.+.++|+||.+.
T Consensus 13 ~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 356899999999998 46544321 1 0235556776532 2234457788888774
No 294
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.67 E-value=17 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=16.7
Q ss_pred ccCC-CcEEEEcCChhhHHHHHH
Q psy6714 129 RWNR-SDKQIAGTTERGPGALIA 150 (303)
Q Consensus 129 ~~~~-mkIgIIGlG~MG~~~La~ 150 (303)
||.. ++|.|||+|..|-+.+..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~ 25 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKH 25 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHH
Confidence 5666 789999999999854443
No 295
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.60 E-value=3.4 Score=39.51 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=44.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+..++|||||.|+ +|..+. .+.++
T Consensus 155 l~Gk~vvVvGrS~iVGkP-la~lL~-------~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~------~~~vk 220 (282)
T PRK14166 155 LEGKDAVIIGASNIVGRP-MATMLL-------NAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLR------SDMVK 220 (282)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 345789999955 56776 433321 234443 245667889999999999 566543 22356
Q ss_pred CCCEEEEecCCCcH
Q psy6714 202 ESNLLISVAGGVPI 215 (303)
Q Consensus 202 ~g~IVVSiaaGV~i 215 (303)
+|.+||.+ |++.
T Consensus 221 ~GavVIDv--Gin~ 232 (282)
T PRK14166 221 EGVIVVDV--GINR 232 (282)
T ss_pred CCCEEEEe--cccc
Confidence 88888865 5443
No 296
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=84.50 E-value=2.5 Score=41.28 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV 155 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~ 155 (303)
.++|+|+|+|.+|++ ++..+.+.
T Consensus 3 ~v~v~l~G~G~VG~~-~~~il~~~ 25 (333)
T COG0460 3 TVKVGLLGLGTVGSG-VLEILAEK 25 (333)
T ss_pred eEEEEEEccCchhHH-HHHHHHHh
Confidence 578999999999995 66554443
No 297
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.20 E-value=3.6 Score=39.49 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=42.0
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+ .+.|+++ + .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 158 ~GK~vvViGrS~iVGkP-la~lL-------~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~------~~~vk~ 223 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKP-LSALL-------LKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLT------AEYFNP 223 (288)
T ss_pred CCCEEEEECCCCcchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccC------HHHcCC
Confidence 45789999955 56776 33332 1234433 2 35677889999999999 566443 224568
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 224 GavVIDv 230 (288)
T PRK14171 224 ESIVIDV 230 (288)
T ss_pred CCEEEEe
Confidence 8888865
No 298
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.09 E-value=3.7 Score=39.13 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=42.7
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+ .+.|+++ + .+..+.+++|||||.|+ +|..+. .++++
T Consensus 156 l~Gk~vvViGrS~~VGkP-la~lL-------~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~ik 221 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKP-VAQLL-------LNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFID------EEYVK 221 (278)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 34678999994 466776 43332 1234433 2 35677889999999999 466432 22356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (278)
T PRK14172 222 EGAIVIDV 229 (278)
T ss_pred CCcEEEEe
Confidence 88888865
No 299
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.05 E-value=3.7 Score=39.46 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=42.8
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 158 l~Gk~vvViGrS~iVGkP-la~lL~-------~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~------~~~ik 223 (294)
T PRK14187 158 LSGSDAVVIGRSNIVGKP-MACLLL-------GENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVK------YSWIK 223 (294)
T ss_pred CCCCEEEEECCCccchHH-HHHHHh-------hCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 446789999955 56776 433321 234443 235677899999999999 466433 22456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 224 ~gaiVIDV 231 (294)
T PRK14187 224 KGAIVIDV 231 (294)
T ss_pred CCCEEEEe
Confidence 88888865
No 300
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=83.86 E-value=1.3 Score=43.88 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=16.9
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
+++|||||-|..|. |++.+
T Consensus 1 ~~tvgIlGGGQLgr-Mm~~a 19 (375)
T COG0026 1 MKTVGILGGGQLGR-MMALA 19 (375)
T ss_pred CCeEEEEcCcHHHH-HHHHH
Confidence 57899999999999 88876
No 301
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=83.45 E-value=2.4 Score=38.22 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCC----eEecChHHhhcCCCEEEEeeCCccHHH--HH------Hhhc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGA----KITFDNKEVTLNSEVIILAVKPHIVPV--AL------NDIK 197 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v~~--VL------~eI~ 197 (303)
||||+|| |+|+++. +..+ +++.|. .+..++.+ ++++|.|||.=......+ .+ ..+.
T Consensus 1 ~~~~~iid~g~gn~~s--~~~a-------l~~~g~~~~v~~~~~~~~-l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~ 70 (209)
T PRK13146 1 MMTVAIIDYGSGNLRS--AAKA-------LERAGAGADVVVTADPDA-VAAADRVVLPGVGAFADCMRGLRAVGLGEAVI 70 (209)
T ss_pred CCeEEEEECCCChHHH--HHHH-------HHHcCCCccEEEECCHHH-hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHH
Confidence 6899999 6777866 3333 334444 34444444 689999999543222221 11 1222
Q ss_pred cc-cCCCCEEEEecCCCc
Q psy6714 198 PV-FNESNLLISVAGGVP 214 (303)
Q Consensus 198 ~~-L~~g~IVVSiaaGV~ 214 (303)
.. ...+.-|+.++.|..
T Consensus 71 ~~~~~~~~PvlGiC~G~q 88 (209)
T PRK13146 71 EAVLAAGRPFLGICVGMQ 88 (209)
T ss_pred HHHHhCCCcEEEECHHHH
Confidence 22 234566777776653
No 302
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.16 E-value=4.6 Score=38.64 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=42.8
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+ .+.|.++ + .+..+..++|||||.|+ +|..+. .++++
T Consensus 157 l~Gk~vvViGrS~iVGkP-la~lL-------~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~------~~~ik 222 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKP-MAMLL-------TEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIK------ADWIS 222 (284)
T ss_pred CCCCEEEEECCCCcchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccC------HHHcC
Confidence 34578999994 466776 43332 2234433 2 35667899999999999 466543 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 223 ~gavVIDv 230 (284)
T PRK14177 223 EGAVLLDA 230 (284)
T ss_pred CCCEEEEe
Confidence 88888865
No 303
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.05 E-value=3.2 Score=37.32 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=40.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh-----------cHH---HHhhCC-CeEecC--hHHhhcCCCEEEEeeCCccHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI-----------VSK---ATGTMG-AKITFD--NKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r-----------~~e---~l~e~G-v~v~~d--~~eav~~ADIVILAVpP~~v~~V 192 (303)
+..++|.|||.|.||. ..+..+-. ..+ .+.+.| +..... ..+.+.++|+||.|+....+...
T Consensus 8 l~~k~vLVIGgG~va~-~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~ 86 (202)
T PRK06718 8 LSNKRVVIVGGGKVAG-RRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ 86 (202)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence 4567999999999998 44433211 011 122223 322111 12346789999999998888877
Q ss_pred HHhhc
Q psy6714 193 LNDIK 197 (303)
Q Consensus 193 L~eI~ 197 (303)
+.+..
T Consensus 87 i~~~a 91 (202)
T PRK06718 87 VKEDL 91 (202)
T ss_pred HHHHH
Confidence 75544
No 304
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.99 E-value=4.4 Score=38.81 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=42.6
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.||| ...+|.+ |+..+ ...|.+++ .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 154 ~Gk~vvViGrS~iVGkP-la~lL-------~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~vk~ 219 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKP-LAALL-------LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLIT------PEMVRP 219 (287)
T ss_pred CCCEEEEECCCCccHHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcCC
Confidence 457899999 5566776 43332 12344332 35677899999999999 465442 234668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 220 GavVIDV 226 (287)
T PRK14173 220 GAVVVDV 226 (287)
T ss_pred CCEEEEc
Confidence 8888864
No 305
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.72 E-value=2.9 Score=40.98 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCCCcccccC---CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecC--hH---Hhh-cCCCE
Q psy6714 122 TPSSREARWN---RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFD--NK---EVT-LNSEV 179 (303)
Q Consensus 122 ~~~~~~~~~~---~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d--~~---eav-~~ADI 179 (303)
|--++.++|+ ..+|+|+|+|-+|. |.+... .+.. +.++++|.....+ .. +.+ +.+|+
T Consensus 154 T~y~alk~~~~~pG~~V~I~G~GGlGh-~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 154 TTYRALKKANVKPGKWVAVVGAGGLGH-MAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred eEeeehhhcCCCCCCEEEEECCcHHHH-HHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcE
Confidence 3334444444 46899999997776 433221 1222 2345777643211 12 222 23899
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEE
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLL 206 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IV 206 (303)
||.++++..+...++-++. .|+++
T Consensus 233 ii~tv~~~~~~~~l~~l~~---~G~~v 256 (339)
T COG1064 233 IIDTVGPATLEPSLKALRR---GGTLV 256 (339)
T ss_pred EEECCChhhHHHHHHHHhc---CCEEE
Confidence 8888887667766665542 45543
No 306
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.42 E-value=4.8 Score=38.51 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=42.8
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+. +.|+++ +.|..+..++|||||.|+ +|..+.. +.++
T Consensus 156 l~Gk~vvViGrS~~VGkP-la~lL~-------~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~------~~vk 221 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKP-VSQLLL-------NAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITA------DMVK 221 (282)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCH------HHcC
Confidence 4467899999 4566876 433321 224433 245667899999999999 4665432 2456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (282)
T PRK14180 222 EGAVVIDV 229 (282)
T ss_pred CCcEEEEe
Confidence 88888865
No 307
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.23 E-value=2.2 Score=41.66 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHHHHh----hCCCeE--e----cChHHhhcCCCEEEEee--CCccHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSKATG----TMGAKI--T----FDNKEVTLNSEVIILAV--KPHIVPV 191 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e~l~----e~Gv~v--~----~d~~eav~~ADIVILAV--pP~~v~~ 191 (303)
-|+.|||-|.+|.....++ ++.+.++++ .++.++ . .+.++.+..+|+||=+| |-.....
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 4899999999998422222 123333433 234432 2 23457788999999998 3222222
Q ss_pred HH-HhhccccCCCCEEEEec--CCCcHHHHHh--hC-C---CCCceEEEecCcHHhhh
Q psy6714 192 AL-NDIKPVFNESNLLISVA--GGVPIKNMEQ--AL-P---KNSRIIRAMPNTPALVR 240 (303)
Q Consensus 192 VL-~eI~~~L~~g~IVVSia--aGV~ie~L~~--~l-~---~~~~VVr~mPn~p~~v~ 240 (303)
++ +++...++++.+||.++ -|=.++.++- +- | .+-.+-.++||.|..+-
T Consensus 249 Lvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVp 306 (371)
T COG0686 249 LVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAVP 306 (371)
T ss_pred ehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCCCcccc
Confidence 22 44444567899888654 2223444422 11 1 01133466799887654
No 308
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.18 E-value=4.8 Score=38.48 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+ ...|.++ + .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 155 ~Gk~vvViGrS~iVGkP-la~lL-------~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~------~~~vk~ 220 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRP-LAGLM-------VNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIG------ADAVKP 220 (282)
T ss_pred CCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcCC
Confidence 45789999954 66776 33332 1234433 2 35677889999999999 466543 224668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 221 GavVIDv 227 (282)
T PRK14169 221 GAVVIDV 227 (282)
T ss_pred CcEEEEe
Confidence 8888865
No 309
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.16 E-value=4.6 Score=38.59 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=42.7
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+ +|..+. .+++++
T Consensus 156 ~Gk~vvViGrS~~VG~P-la~lL~-------~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~------~~~vk~ 221 (281)
T PRK14183 156 KGKDVCVVGASNIVGKP-MAALLL-------NANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLIT------EDMVKE 221 (281)
T ss_pred CCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccC------HHHcCC
Confidence 45789999977 77886 433321 223332 235677899999999999 466443 224568
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 222 gavvIDv 228 (281)
T PRK14183 222 GAIVIDI 228 (281)
T ss_pred CcEEEEe
Confidence 8888865
No 310
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.97 E-value=2.1 Score=37.06 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHhhcCCCEEEEee--CCccHHHHH-HhhccccCCCCEEEEec
Q psy6714 171 KEVTLNSEVIILAV--KPHIVPVAL-NDIKPVFNESNLLISVA 210 (303)
Q Consensus 171 ~eav~~ADIVILAV--pP~~v~~VL-~eI~~~L~~g~IVVSia 210 (303)
.+.+..+|+||.++ +......++ ++....++++.+|+.++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 45667899999866 333343333 22333456787777654
No 311
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.95 E-value=5.6 Score=38.69 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.7
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..++++++|+||.|+......-++.++.
T Consensus 110 ~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 110 LEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 3567889999999997766666665554
No 312
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.92 E-value=4.3 Score=39.94 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=43.9
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|+++ +.+..+.+++|||||.|+ +|..+. .+.++
T Consensus 212 l~GK~vvVIGRS~iVGkP-la~LL~-------~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~------~d~vk 277 (345)
T PLN02897 212 IAGKNAVVIGRSNIVGLP-MSLLLQ-------RHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVR------GSWLK 277 (345)
T ss_pred CCCCEEEEECCCccccHH-HHHHHH-------HCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 345789999954 56776 333221 233432 245678899999999999 466433 22466
Q ss_pred CCCEEEEecCCCc
Q psy6714 202 ESNLLISVAGGVP 214 (303)
Q Consensus 202 ~g~IVVSiaaGV~ 214 (303)
+|.+||.+ |+.
T Consensus 278 ~GavVIDV--Gin 288 (345)
T PLN02897 278 PGAVVIDV--GTT 288 (345)
T ss_pred CCCEEEEc--ccc
Confidence 88888865 554
No 313
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.89 E-value=3.7 Score=39.72 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++++++|+||.|+.....+-++..+... .++++|+.+-|.
T Consensus 103 ~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~aalGf 143 (307)
T cd01486 103 EELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVINAALGF 143 (307)
T ss_pred HHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEEEEecc
Confidence 46789999999999777776565554322 345666543333
No 314
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.82 E-value=2.4 Score=40.57 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.||| .+.+|.+ |+..+.+. ..|+++ +.+..+.+++|||||.|+ +|..+. .+++++
T Consensus 157 ~Gk~vvViGrS~~VGkP-la~lL~~~-----~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~------~~~ik~ 224 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRP-IGLLLTRR-----SENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVT------ADMVKP 224 (284)
T ss_pred CCCEEEEECCCCcchHH-HHHHHhhc-----cCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccC------HHHcCC
Confidence 457899999 5567876 43332110 023332 235677899999999999 465432 234668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 225 GavVIDv 231 (284)
T PRK14193 225 GAAVLDV 231 (284)
T ss_pred CCEEEEc
Confidence 8888864
No 315
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.62 E-value=5.3 Score=38.20 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+. |..+. .+++++
T Consensus 156 ~Gk~vvViGrS~iVGkP-la~lL~-------~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~------~~~ik~ 221 (282)
T PRK14182 156 KGKRALVVGRSNIVGKP-MAMMLL-------ERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVK------GAWVKE 221 (282)
T ss_pred CCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcCC
Confidence 45789999954 66776 333321 223432 2356778899999999994 55432 224668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 222 gaiVIDv 228 (282)
T PRK14182 222 GAVVIDV 228 (282)
T ss_pred CCEEEEe
Confidence 8888864
No 316
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=81.60 E-value=5.1 Score=38.60 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+ .+.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 165 l~Gk~vvVIGRS~iVGkP-la~lL-------~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~------~~~vk 230 (299)
T PLN02516 165 IKGKKAVVVGRSNIVGLP-VSLLL-------LKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIK------GDWIK 230 (299)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 446899999955 56776 43332 1224433 235677899999999999 454332 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 231 ~gavVIDv 238 (299)
T PLN02516 231 PGAAVIDV 238 (299)
T ss_pred CCCEEEEe
Confidence 88888865
No 317
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.43 E-value=3.4 Score=38.27 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=19.3
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.++
T Consensus 117 ~~~~~~~DiVi~~~D~~~~r~~ln~~ 142 (245)
T PRK05690 117 AALIAGHDLVLDCTDNVATRNQLNRA 142 (245)
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHH
Confidence 35678999999999766666666554
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.43 E-value=9.9 Score=29.97 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=34.3
Q ss_pred EEEEcCChhhHHHHHHHHhhcH-------------HHHhhCCCeEe-cCh--HH-----hhcCCCEEEEeeCCccHHHHH
Q psy6714 135 KQIAGTTERGPGALIASLNIVS-------------KATGTMGAKIT-FDN--KE-----VTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 135 IgIIGlG~MG~~~La~al~r~~-------------e~l~e~Gv~v~-~d~--~e-----av~~ADIVILAVpP~~v~~VL 193 (303)
|-|+|.|.+|. .++..+.... +.+.+.|+.+. .|. .+ -++++|.||++++.+...-.+
T Consensus 1 vvI~G~g~~~~-~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 1 VVIIGYGRIGR-EIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp EEEES-SHHHH-HHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred eEEEcCCHHHH-HHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 56899999999 5776643321 23456676542 221 11 246899999998766554333
No 319
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.11 E-value=4.6 Score=39.96 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=43.8
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+ .+.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 229 l~GK~vvVIGRS~iVGkP-La~LL-------~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~------~d~vK 294 (364)
T PLN02616 229 IKGKRAVVIGRSNIVGMP-AALLL-------QREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVR------GSWIK 294 (364)
T ss_pred CCCCEEEEECCCccccHH-HHHHH-------HHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCC------HHHcC
Confidence 3457899999 4466776 33322 1234433 245678899999999999 466433 22466
Q ss_pred CCCEEEEecCCCc
Q psy6714 202 ESNLLISVAGGVP 214 (303)
Q Consensus 202 ~g~IVVSiaaGV~ 214 (303)
+|.+||.+ |+.
T Consensus 295 ~GAvVIDV--GIn 305 (364)
T PLN02616 295 PGAVVIDV--GIN 305 (364)
T ss_pred CCCEEEec--ccc
Confidence 88888864 554
No 320
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.86 E-value=2.2 Score=40.34 Aligned_cols=108 Identities=8% Similarity=0.040 Sum_probs=55.1
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHHHHh----h----CC-CeE--ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSKATG----T----MG-AKI--TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e~l~----e----~G-v~v--~~d~~eav~~ADIVILAVpP~~v 189 (303)
.+++.|||+|.+|.+ ++.. ++++.++.+ . .+ ..+ ..+..+.+.++|+||-|+|.-.-
T Consensus 127 ~k~vlIlGaGGaara-ia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~ 205 (284)
T PRK12549 127 LERVVQLGAGGAGAA-VAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMA 205 (284)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCC
Confidence 467999999999994 3332 123322211 1 11 222 12334467789999999863311
Q ss_pred HHHHHhh-ccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 190 PVALNDI-KPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 190 ~~VL~eI-~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...-..+ ...+.++.+|+.++ .+....-|+..-..+ .+++....+.+.|+.
T Consensus 206 ~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G---~~~~~G~~ML~~Qa~ 258 (284)
T PRK12549 206 KHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALG---CRTLDGGGMAVFQAV 258 (284)
T ss_pred CCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCC---CeEecCHHHHHHHHH
Confidence 0000001 12255666777654 444444444432222 345666677776653
No 321
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=80.55 E-value=6.4 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=28.8
Q ss_pred ChHHhhcCCCEEEEeeCCccH-HHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 169 DNKEVTLNSEVIILAVKPHIV-PVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 169 d~~eav~~ADIVILAVpP~~v-~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+..++++++|+||=++++..+ +++++.+. ++.+|+.+.+....
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~----~~~ivf~lsnP~~e 133 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVVKKEMIKKMA----KDPIVFALANPVPE 133 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCCCHHHHHhhC----CCCEEEEeCCCCCc
Confidence 555788899999999975544 34555443 56677777766643
No 322
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.49 E-value=4.6 Score=38.85 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=42.8
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.++..+.+++. -..++++ + .+..+.+++|||||.|+ +|..+. .+.++
T Consensus 155 l~GK~vvViGrS~iVGkPla~lL~~~~----~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~------~~~vk 224 (293)
T PRK14185 155 TSGKKCVVLGRSNIVGKPMAQLMMQKA----YPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVK------ADMVK 224 (293)
T ss_pred CCCCEEEEECCCccchHHHHHHHHcCC----CCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 345789999955 56776322222221 0013332 2 45677889999999999 466543 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 225 ~gavVIDv 232 (293)
T PRK14185 225 EGAVVIDV 232 (293)
T ss_pred CCCEEEEe
Confidence 88888865
No 323
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=80.41 E-value=4.7 Score=35.88 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEEc-CChhhHHHHHHHHhh---------------cHHHHhhCCCeEe-------cChHHhhcCCCEEEEeeCC
Q psy6714 135 KQIAG-TTERGPGALIASLNI---------------VSKATGTMGAKIT-------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 135 IgIIG-lG~MG~~~La~al~r---------------~~e~l~e~Gv~v~-------~d~~eav~~ADIVILAVpP 186 (303)
|.|+| +|.+|.+ ++..+.. ..+.+...|+.+. .+..++++++|.||+++++
T Consensus 1 I~V~GatG~~G~~-v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRS-VVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHH-HHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHH-HHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68898 6999994 5544211 1124556788643 1234578999999999983
No 324
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.13 E-value=6.5 Score=35.15 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=14.4
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...||.|||+|.+|..
T Consensus 19 L~~s~VlIiG~gglG~e 35 (197)
T cd01492 19 LRSARILLIGLKGLGAE 35 (197)
T ss_pred HHhCcEEEEcCCHHHHH
Confidence 44679999999999994
No 325
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=80.03 E-value=3.4 Score=37.74 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=41.9
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH---------hhcc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN---------DIKP 198 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~---------eI~~ 198 (303)
||+|+|| |+|++.. +. ..++..|+. ++.|+ +.+..||-|||.= .-.+.+..+ .|++
T Consensus 1 m~~i~IIDyg~GNL~S--v~-------~Aler~G~~~~vs~d~-~~i~~AD~liLPG-VGaf~~am~~L~~~gl~~~i~~ 69 (204)
T COG0118 1 MMMVAIIDYGSGNLRS--VK-------KALERLGAEVVVSRDP-EEILKADKLILPG-VGAFGAAMANLRERGLIEAIKE 69 (204)
T ss_pred CCEEEEEEcCcchHHH--HH-------HHHHHcCCeeEEecCH-HHHhhCCEEEecC-CCCHHHHHHHHHhcchHHHHHH
Confidence 6889999 8888776 22 234455554 44444 4577899999862 122222222 2333
Q ss_pred ccCCCCEEEEecCCCcH
Q psy6714 199 VFNESNLLISVAGGVPI 215 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~i 215 (303)
.+..++-++-++-|+.+
T Consensus 70 ~~~~~kP~LGIClGMQl 86 (204)
T COG0118 70 AVESGKPFLGICLGMQL 86 (204)
T ss_pred HHhcCCCEEEEeHhHHh
Confidence 33345667777666654
No 326
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.03 E-value=6.2 Score=35.85 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.+.
T Consensus 106 ~~~~~~~DvVi~~~d~~~~r~~l~~~ 131 (228)
T cd00757 106 EELIAGYDLVLDCTDNFATRYLINDA 131 (228)
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHH
Confidence 35677899999998765555555544
No 327
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.86 E-value=38 Score=33.41 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hc--------HHHHhhCCCeEe-cC-hHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IV--------SKATGTMGAKIT-FD-NKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~--------~e~l~e~Gv~v~-~d-~~eav~~ADIVILAVp 185 (303)
..+++.|+|.|.+|. .++..+- .. .+.+.+.|+.+. .+ ..+....+|+||.+.-
T Consensus 4 ~~k~v~iiG~g~~G~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 4 KGKKVLVVGAGVSGL-ALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 357899999999887 4554321 11 012334466532 12 2234566888888774
No 328
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=79.56 E-value=3.7 Score=39.94 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=23.4
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEE
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVS 208 (303)
.++++++|+||-|++|..-..+++.... .+.-+|+
T Consensus 62 ~~~~~~~dvVin~~gp~~~~~v~~~~i~---~g~~yvD 96 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPFFGEPVARACIE---AGVHYVD 96 (386)
T ss_dssp HHHHTTSSEEEE-SSGGGHHHHHHHHHH---HT-EEEE
T ss_pred HHHHhcCCEEEECCccchhHHHHHHHHH---hCCCeec
Confidence 4578899999999998877677654332 3445665
No 329
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.16 E-value=7.9 Score=30.76 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCcEEEE-cCChhhHHHHHHHHhhcHHHHhhCCCeE--e-c---ChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIA-GTTERGPGALIASLNIVSKATGTMGAKI--T-F---DNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgII-GlG~MG~~~La~al~r~~e~l~e~Gv~v--~-~---d~~eav~~ADIVILAVpP~ 187 (303)
++||-++ |.| |++.+++ ++-.+.+++.|+.+ . . +..+...+.|+|+++-.-.
T Consensus 3 ~~~ILl~C~~G-~sSS~l~---~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 3 ETNILLLCAAG-MSTSLLV---NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred ccEEEEECCCc-hhHHHHH---HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH
Confidence 5678777 777 8884333 34455566777743 1 1 2234567899998886433
No 330
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.11 E-value=7.1 Score=37.44 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=42.4
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.++..+.+++... .+.++ + .+..+.+++|||||.|+. |..+. .++++
T Consensus 151 l~Gk~vvViGrS~iVGkPla~lL~~~~~~----~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~------~~~ik 220 (287)
T PRK14181 151 LHGRHVAIVGRSNIVGKPLAALLMQKHPD----TNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIK------EEMIA 220 (287)
T ss_pred CCCCEEEEECCCccchHHHHHHHHhCcCC----CCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 346789999954 6677633222222000 03332 2 456778999999999994 65432 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 221 ~GavVIDv 228 (287)
T PRK14181 221 EKAVIVDV 228 (287)
T ss_pred CCCEEEEe
Confidence 88888865
No 331
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.11 E-value=2.8 Score=35.55 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=31.2
Q ss_pred EEEEc-CChhhHHHHHHHH-h---------hcHHHHh-hCCCeEe----cC---hHHhhcCCCEEEEeeC
Q psy6714 135 KQIAG-TTERGPGALIASL-N---------IVSKATG-TMGAKIT----FD---NKEVTLNSEVIILAVK 185 (303)
Q Consensus 135 IgIIG-lG~MG~~~La~al-~---------r~~e~l~-e~Gv~v~----~d---~~eav~~ADIVILAVp 185 (303)
|.|+| .|.+|. .++..+ + +..+++. ..++++. .+ ..++++++|.||.++.
T Consensus 1 I~V~GatG~vG~-~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGR-ALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHH-HHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHH-HHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 67898 699999 455543 2 2223333 3455432 22 3456789999999996
No 332
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.90 E-value=4.7 Score=40.67 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred CCCCcccccCCCcEEEEcCChhhHHHHHHHHh----------hcH----HHHhhCCCeEec--ChHHhhcCCCEEEEee-
Q psy6714 122 TPSSREARWNRSDKQIAGTTERGPGALIASLN----------IVS----KATGTMGAKITF--DNKEVTLNSEVIILAV- 184 (303)
Q Consensus 122 ~~~~~~~~~~~mkIgIIGlG~MG~~~La~al~----------r~~----e~l~e~Gv~v~~--d~~eav~~ADIVILAV- 184 (303)
.|+.+.-+..++||.|+|+|..|. +++..+. +.. +.+.+.|+.+.. +..+.++++|+||.+-
T Consensus 5 ~~~~~~~~~~~~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spg 83 (473)
T PRK00141 5 VPLSALPQELSGRVLVAGAGVSGR-GIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPG 83 (473)
T ss_pred ChhhhcccccCCeEEEEccCHHHH-HHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCC
Confidence 345555556678899999999998 5555432 111 112456886643 3345567899999874
Q ss_pred -CCcc
Q psy6714 185 -KPHI 188 (303)
Q Consensus 185 -pP~~ 188 (303)
++..
T Consensus 84 i~~~~ 88 (473)
T PRK00141 84 WRPDS 88 (473)
T ss_pred CCCCC
Confidence 5543
No 333
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=78.89 E-value=8 Score=42.12 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVSKAT 159 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~e~l 159 (303)
+.++|+|+|+|++|.+ ++..+.+..+.+
T Consensus 464 ~~~~i~l~G~G~VG~~-~~~~l~~~~~~l 491 (819)
T PRK09436 464 QVLDVFVIGVGGVGGA-LLEQIKRQQPWL 491 (819)
T ss_pred ccccEEEEecCHHHHH-HHHHHHHHHHHH
Confidence 4689999999999994 766655444444
No 334
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=78.87 E-value=6.7 Score=36.01 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=52.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh---------------------cHHHH----hhCC-------CeEecChHHhh-cC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI---------------------VSKAT----GTMG-------AKITFDNKEVT-LN 176 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r---------------------~~e~l----~e~G-------v~v~~d~~eav-~~ 176 (303)
++.++|+|.|+|++|.. ++..+.+ +.+.+ .+.| ... .++.+++ .+
T Consensus 29 l~~~~v~I~G~G~VG~~-~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~-~~~~~i~~~~ 106 (227)
T cd01076 29 LAGARVAIQGFGNVGSH-AARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAER-ITNEELLELD 106 (227)
T ss_pred ccCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCcee-cCCccceeec
Confidence 35789999999999994 5543211 11111 1222 111 1223322 37
Q ss_pred CCEEEEeeCCccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcH
Q psy6714 177 SEVIILAVKPHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 177 ADIVILAVpP~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p 236 (303)
|||+|-|.....+. +.+.++. -++|+--+++--...-.+.|.. +-|.++|..-
T Consensus 107 ~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~t~~a~~~L~~--rGi~~~PD~~ 160 (227)
T cd01076 107 CDILIPAALENQITADNADRIK-----AKIIVEAANGPTTPEADEILHE--RGVLVVPDIL 160 (227)
T ss_pred ccEEEecCccCccCHHHHhhce-----eeEEEeCCCCCCCHHHHHHHHH--CCCEEEChHH
Confidence 99999999766654 3334442 3466755543332444444432 3566666643
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.84 E-value=8.4 Score=33.71 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.7
Q ss_pred cEEEEcCChhhHH
Q psy6714 134 DKQIAGTTERGPG 146 (303)
Q Consensus 134 kIgIIGlG~MG~~ 146 (303)
||.|||+|.||+.
T Consensus 1 ~VlViG~GglGs~ 13 (174)
T cd01487 1 KVGIAGAGGLGSN 13 (174)
T ss_pred CEEEECcCHHHHH
Confidence 5899999999994
No 336
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=78.81 E-value=3.6 Score=40.28 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=16.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~a 151 (303)
+...++.|||+|.||. ..+..
T Consensus 172 l~~k~vLvIGaGem~~-l~a~~ 192 (338)
T PRK00676 172 SKKASLLFIGYSEINR-KVAYY 192 (338)
T ss_pred ccCCEEEEEcccHHHH-HHHHH
Confidence 4578999999999999 45444
No 337
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.73 E-value=2.4 Score=33.80 Aligned_cols=68 Identities=7% Similarity=-0.056 Sum_probs=35.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH-------H-HHhhCCCeEe-cChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS-------K-ATGTMGAKIT-FDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~-------e-~l~e~Gv~v~-~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
+...++.|||.|.+|...+...++... + ...+..++.. ....+.++++|+||+|+....+.+.+.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a 81 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADA 81 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHH
Confidence 456789999999999842222211100 0 0111122221 122345778999999998777776665443
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=78.28 E-value=4.1 Score=35.19 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=41.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-hh----------cHHHHhhCC-CeEecC-h-HHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-NI----------VSKATGTMG-AKITFD-N-KEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-~r----------~~e~l~e~G-v~v~~d-~-~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+..++|.|||.|.+|. ..+..+ +. ..+.+.+++ +.+... . .+-++++|+||.|+..+.+...+.+
T Consensus 11 l~~~~vlVvGGG~va~-rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~ 89 (157)
T PRK06719 11 LHNKVVVIIGGGKIAY-RKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQ 89 (157)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHH
Confidence 4567899999999998 344332 11 112233332 222111 1 2236789999999998888877766
Q ss_pred hcc
Q psy6714 196 IKP 198 (303)
Q Consensus 196 I~~ 198 (303)
...
T Consensus 90 ~a~ 92 (157)
T PRK06719 90 AAH 92 (157)
T ss_pred HHH
Confidence 553
No 339
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.05 E-value=6.4 Score=40.63 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.0
Q ss_pred CCcEEEEcCChhhHH
Q psy6714 132 RSDKQIAGTTERGPG 146 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~ 146 (303)
..|+.|||.|.+|-.
T Consensus 165 g~kVlViGaG~iGL~ 179 (509)
T PRK09424 165 PAKVLVIGAGVAGLA 179 (509)
T ss_pred CCEEEEECCcHHHHH
Confidence 458999999999983
No 340
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.81 E-value=4.4 Score=43.02 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEe
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSi 209 (303)
.++++++|+||.|+.....+-++..+.- ..++++|+.
T Consensus 443 ~~Li~~~DvV~d~tDn~esR~L~n~~c~--~~~kplI~a 479 (664)
T TIGR01381 443 EQLIKDHDVVFLLLDSREARWLPTVLCS--RHKKIAISA 479 (664)
T ss_pred HHHHhhCCEEEECCCCHHHHHHHHHHHH--HhCCCEEEE
Confidence 4578899999999987766655544321 134455544
No 341
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.63 E-value=8 Score=37.26 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=44.8
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+.+. ....+.++ + .+..+.+++|||||.|+ +|..+.. ++++
T Consensus 155 l~Gk~vvViGrS~iVGkP-la~lL~~~---~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~------~~ik 224 (297)
T PRK14167 155 TEGADVVVVGRSDIVGKP-MANLLIQK---ADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDG------SMLS 224 (297)
T ss_pred CCCCEEEEECCCcccHHH-HHHHHhcC---ccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCH------HHcC
Confidence 34678999994 466876 44332110 00013332 2 34567889999999999 6774432 3466
Q ss_pred CCCEEEEecCCCcH
Q psy6714 202 ESNLLISVAGGVPI 215 (303)
Q Consensus 202 ~g~IVVSiaaGV~i 215 (303)
+|.+||.+ |++.
T Consensus 225 ~gaiVIDv--Gin~ 236 (297)
T PRK14167 225 EGATVIDV--GINR 236 (297)
T ss_pred CCCEEEEc--cccc
Confidence 88888865 5443
No 342
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=77.43 E-value=4.9 Score=35.20 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCCcEEEEc-CChhhHHHHHHHH----------hhcHHHH-------h-hCCCeE--e--cC---hHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAG-TTERGPGALIASL----------NIVSKAT-------G-TMGAKI--T--FD---NKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al----------~r~~e~l-------~-e~Gv~v--~--~d---~~eav~~ADIVILAV 184 (303)
..+++.|+| .|.+|. .++..+ .+..+++ . ..+..+ . .+ ..++++++|+||.++
T Consensus 27 ~~~~vlVlGgtG~iG~-~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGGTGPVGQ-RAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECCCCHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 467899998 599998 344331 1222221 1 123221 1 12 235678899999998
Q ss_pred CCcc
Q psy6714 185 KPHI 188 (303)
Q Consensus 185 pP~~ 188 (303)
+...
T Consensus 106 ~~g~ 109 (194)
T cd01078 106 AAGV 109 (194)
T ss_pred CCCc
Confidence 7554
No 343
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.34 E-value=13 Score=36.49 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=42.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------cHH---HHhhC--CCeE-ecCh--H-----HhhcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------VSK---ATGTM--GAKI-TFDN--K-----EVTLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e~--Gv~v-~~d~--~-----eav~~ADIVILAVpP~ 187 (303)
.+++|.|+|+|.+|. .++..+.. ..+ .+.+. ++.+ ..|. . .-++++|.||++++.+
T Consensus 230 ~~~~iiIiG~G~~g~-~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 230 PVKRVMIVGGGNIGY-YLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCEEEEECCCHHHH-HHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 367899999999999 57665432 222 23322 4432 2221 1 1246899999888766
Q ss_pred cHHHHHHhhccccCCCCEEE
Q psy6714 188 IVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVV 207 (303)
...-++..+...+....+|+
T Consensus 309 ~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 EANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred HHHHHHHHHHHHhCCCeEEE
Confidence 54433333333343444444
No 344
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.11 E-value=8.8 Score=36.91 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=41.8
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCe--Ee----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAK--IT----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~--v~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+.. ++...|.+ ++ .+..+.+++||+||.||. |..+. .++++
T Consensus 157 l~Gk~vvViGrS~iVG~P-la~lL~~---~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~------~~~vk 226 (295)
T PRK14174 157 TKGKHCVVVGRSNIVGKP-MANLMLQ---KLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFIT------ADMVK 226 (295)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHHh---ccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccC------HHHcC
Confidence 34578999994 466876 3332211 11123333 22 345778999999999994 43221 22356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 227 ~GavVIDV 234 (295)
T PRK14174 227 PGAVVIDV 234 (295)
T ss_pred CCCEEEEe
Confidence 88888865
No 345
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=76.96 E-value=6.2 Score=38.34 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc---------H----HHHhhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV---------S----KATGTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~---------~----e~l~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~e 195 (303)
..||.|-| +|.-|. .-+.....+ + +.....|+.+..+..|+.+. +|+.+|+||+..+.+.+.+
T Consensus 29 ~t~v~vqGitg~~g~-~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~E 107 (317)
T PTZ00187 29 NTKVICQGITGKQGT-FHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIE 107 (317)
T ss_pred CCeEEEecCCChHHH-HHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEEEecCHHHHHHHHHH
Confidence 46799999 788887 222221111 1 11112377777888888887 9999999999999999987
Q ss_pred hccccCCCCEEEEecCCCcHH
Q psy6714 196 IKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie 216 (303)
..+. .=+.+|-+..|+...
T Consensus 108 a~~a--GI~~~ViiteGfpe~ 126 (317)
T PTZ00187 108 AIEA--EIPLVVCITEGIPQH 126 (317)
T ss_pred HHHc--CCCEEEEECCCCchh
Confidence 6542 124555577787654
No 346
>KOG0023|consensus
Probab=76.75 E-value=41 Score=33.15 Aligned_cols=135 Identities=15% Similarity=0.175 Sum_probs=66.7
Q ss_pred CCCCcccccC---CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEe---c---ChHHhhc--CCCEEEEee-CCccH
Q psy6714 122 TPSSREARWN---RSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT---F---DNKEVTL--NSEVIILAV-KPHIV 189 (303)
Q Consensus 122 ~~~~~~~~~~---~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~---~---d~~eav~--~ADIVILAV-pP~~v 189 (303)
|--+|.++.+ .+++||+|+|.+|. |-. +.++++|..++ . .-+|+++ .+|..|... .++.+
T Consensus 169 TvYspLk~~g~~pG~~vgI~GlGGLGh-~aV-------q~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~ 240 (360)
T KOG0023|consen 169 TVYSPLKRSGLGPGKWVGIVGLGGLGH-MAV-------QYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIM 240 (360)
T ss_pred EEeehhHHcCCCCCcEEEEecCcccch-HHH-------HHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHH
Confidence 3344555533 37899999988887 322 13445665432 1 2345555 578777777 35555
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceE-EEecCcHHhhh-----CCcEEEEeCCCCCHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII-RAMPNTPALVR-----QGASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VV-r~mPn~p~~v~-----~G~til~~g~~~~~e~~e~V~~L 263 (303)
.++.+.+ +.+ .+ .++++ +-..++.+-..+..+..+| -.+|..+.... -+...+....-.+..+.+.+.++
T Consensus 241 ~~~~~~~-dg~-~~-~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf 316 (360)
T KOG0023|consen 241 KAIMKTT-DGG-ID-TVSNL-AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDF 316 (360)
T ss_pred HHHHHhh-cCc-ce-eeeec-cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHH
Confidence 5544332 222 11 12233 4555666666665433443 44565443221 11122222222244555666666
Q ss_pred HHhcC
Q psy6714 264 FKSVG 268 (303)
Q Consensus 264 fs~iG 268 (303)
+..=+
T Consensus 317 ~a~~~ 321 (360)
T KOG0023|consen 317 VARGL 321 (360)
T ss_pred HHcCC
Confidence 65544
No 347
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=76.60 E-value=32 Score=34.42 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCCcEEEEcCChhhHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALI 149 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La 149 (303)
+-.|||+||.|.||.+++.
T Consensus 16 ~PiRVGlIGAG~mG~~ivt 34 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVT 34 (438)
T ss_pred CceEEEEecccccchHHHH
Confidence 3468999999999996544
No 348
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.58 E-value=6.9 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.6
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...+|.|||+|.||..
T Consensus 26 L~~~~V~ViG~GglGs~ 42 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSN 42 (212)
T ss_pred HhCCCEEEECcCHHHHH
Confidence 45678999999999994
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.34 E-value=39 Score=33.84 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------c-------HHHHhhCCCeEec-ChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------V-------SKATGTMGAKITF-DNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~-------~e~l~e~Gv~v~~-d~~eav~~ADIVILAV 184 (303)
..++|.|||.|.+|-. ++..+.. . .+.+++.|+.+.. +..+....+|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~-~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFA-AADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 3568999999999983 4544211 0 1234566876542 2222345689888887
No 350
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=76.24 E-value=9.5 Score=36.38 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=50.0
Q ss_pred cEEEEc-CChhhHHHHHHHHhhc-HH-------------H---HhhCCCeE------ecChHHhhcC-CC-EEEEeeCCc
Q psy6714 134 DKQIAG-TTERGPGALIASLNIV-SK-------------A---TGTMGAKI------TFDNKEVTLN-SE-VIILAVKPH 187 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r~-~e-------------~---l~e~Gv~v------~~d~~eav~~-AD-IVILAVpP~ 187 (303)
||.|.| .|.||. ..+...... .+ . +...++.+ ..+..++++. +| |+|=-+.|+
T Consensus 2 ~V~V~Ga~GkMG~-~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGK-AVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHH-HHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChH
Confidence 688999 899999 455543221 00 0 11113444 4556666665 88 666566788
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l 222 (303)
.+.+.++.... .+.-+|.-..|.+.+.++++.
T Consensus 81 ~~~~n~~~~~~---~gv~~ViGTTG~~~~~~~~l~ 112 (275)
T TIGR02130 81 AVNDNAAFYGK---HGIPFVMGTTGGDREALAKLV 112 (275)
T ss_pred HHHHHHHHHHH---CCCCEEEcCCCCCHHHHHHHH
Confidence 88777655432 344445555678877776654
No 351
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.91 E-value=8.8 Score=36.73 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=42.1
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+. ..|.++ + .+..+.+++|||||.++. |..+. .++++
T Consensus 156 l~Gk~vvViGrS~iVG~P-la~lL~-------~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~------~~~ik 221 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKP-VGQLLL-------NENATVTYCHSKTKNLAELTKQADILIVAVGKPKLIT------ADMVK 221 (284)
T ss_pred CCCCEEEEECCCCccHHH-HHHHHH-------HCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCC------HHHcC
Confidence 3467899999 5567876 433321 223432 2 345678999999999994 55322 22456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (284)
T PRK14190 222 EGAVVIDV 229 (284)
T ss_pred CCCEEEEe
Confidence 88888865
No 352
>PRK04148 hypothetical protein; Provisional
Probab=75.19 E-value=9.2 Score=32.64 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=49.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCeEe-----cChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAKIT-----FDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~v~-----~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
.+||..||+| -|. .++..+.+ +. +.+++.++.+. ..+.+..+++|+|.-+=||..+..-+
T Consensus 17 ~~kileIG~G-fG~-~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 17 NKKIVELGIG-FYF-KVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred CCEEEEEEec-CCH-HHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 4789999999 665 34443321 11 23445565432 23457788999988888888887777
Q ss_pred HhhccccCCCCEEEEec
Q psy6714 194 NDIKPVFNESNLLISVA 210 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia 210 (303)
.+++..++.+-+|..+.
T Consensus 95 ~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 95 LELAKKINVPLIIKPLS 111 (134)
T ss_pred HHHHHHcCCCEEEEcCC
Confidence 77877775554444443
No 353
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.10 E-value=9.8 Score=36.65 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=42.5
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHH-hhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhcccc
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASL-NIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVF 200 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al-~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L 200 (303)
+..+++.||| ...+|.+ |+..+ ++.. ..+.++ + .+..+.+++|||||.|+ +|..+. .+.+
T Consensus 159 l~Gk~vvViGrS~iVGkP-la~lL~~~~~----~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~------~~~i 227 (297)
T PRK14168 159 TSGAEVVVVGRSNIVGKP-IANMMTQKGP----GANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVK------PEWI 227 (297)
T ss_pred CCCCEEEEECCCCcccHH-HHHHHHhccc----CCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccC------HHHc
Confidence 3457899999 5567876 43332 2100 013332 2 35677889999999999 466432 2246
Q ss_pred CCCCEEEEe
Q psy6714 201 NESNLLISV 209 (303)
Q Consensus 201 ~~g~IVVSi 209 (303)
++|.+||.+
T Consensus 228 k~gavVIDv 236 (297)
T PRK14168 228 KPGATVIDV 236 (297)
T ss_pred CCCCEEEec
Confidence 688888865
No 354
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=73.98 E-value=11 Score=33.72 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.4
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...+|.|||+|.+|..
T Consensus 17 L~~s~VlviG~gglGse 33 (198)
T cd01485 17 LRSAKVLIIGAGALGAE 33 (198)
T ss_pred HhhCcEEEECCCHHHHH
Confidence 44679999999999984
No 355
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.91 E-value=14 Score=38.55 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=44.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe-cC--hHHh-----hcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT-FD--NKEV-----TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~-~d--~~ea-----v~~ADIVILAVpP~~v~ 190 (303)
.+.|-|+|.|.+|. .++..+. .+.+ .+++.|..+. .| ..++ +++||+||++++.+...
T Consensus 400 ~~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 45799999999999 5765532 2222 3456776542 22 2222 46899999999865544
Q ss_pred -HHHHhhccccCCCCEEEE
Q psy6714 191 -VALNDIKPVFNESNLLIS 208 (303)
Q Consensus 191 -~VL~eI~~~L~~g~IVVS 208 (303)
.++..++... ++.-||.
T Consensus 479 ~~i~~~~r~~~-p~~~Iia 496 (601)
T PRK03659 479 MKIVELCQQHF-PHLHILA 496 (601)
T ss_pred HHHHHHHHHHC-CCCeEEE
Confidence 4444455433 4433443
No 356
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=73.88 E-value=14 Score=35.27 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=22.7
Q ss_pred hcCCCEEEEeeCCc----cHHHHHHhhccccCCCCEEE
Q psy6714 174 TLNSEVIILAVKPH----IVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 174 v~~ADIVILAVpP~----~v~~VL~eI~~~L~~g~IVV 207 (303)
+.++|+|||+--.. .=.+++..|..++++|.+|+
T Consensus 190 l~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 190 LKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp ----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred cccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 46899999998765 66789999988888898766
No 357
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=73.53 E-value=9.6 Score=32.21 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCC
Q psy6714 156 SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALP 223 (303)
Q Consensus 156 ~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~ 223 (303)
.+.+.+.|+.+..+..+++.+||||+-.-+|. ..++ ..+++++++|+....... +.++.++.
T Consensus 44 D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~-----~~e~-~~l~~g~~li~~~~~~~~~~~~~~l~~ 106 (136)
T PF05222_consen 44 DEEYEEAGAEIVSRAEEVYSDADIILKVKPPS-----EEEL-ALLKPGQTLIGFLHPAQNKELLEALAK 106 (136)
T ss_dssp HHHHHHTTEEEESSHHHHHTTSSEEEESS--------GGGG-GGS-TTCEEEEE--GGGHHHHHHHHHH
T ss_pred HHHHhhCCcEEecCchhhcccCCEEEEECCCC-----HHHH-hhcCCCcEEEEeeccccCHHHHHHHHH
Confidence 34677889999888889999999765444453 1223 346789999988766643 33444443
No 358
>PRK07411 hypothetical protein; Validated
Probab=72.69 E-value=14 Score=36.65 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.+.++|+||.|+.....+-++.++
T Consensus 123 ~~~~~~~D~Vvd~~d~~~~r~~ln~~ 148 (390)
T PRK07411 123 LDILAPYDVVVDGTDNFPTRYLVNDA 148 (390)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 45788999999999776666666544
No 359
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=72.52 E-value=13 Score=34.41 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.++
T Consensus 109 ~~~~~~~DlVvd~~D~~~~r~~ln~~ 134 (240)
T TIGR02355 109 AALIAEHDIVVDCTDNVEVRNQLNRQ 134 (240)
T ss_pred HHHhhcCCEEEEcCCCHHHHHHHHHH
Confidence 35678899999999766666666554
No 360
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=72.51 E-value=15 Score=36.20 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||-|+.....+-++.++
T Consensus 126 ~~~~~~~DlVid~~Dn~~~r~~in~~ 151 (370)
T PRK05600 126 VELLNGVDLVLDGSDSFATKFLVADA 151 (370)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 45788999999999877666666544
No 361
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=72.44 E-value=2.8 Score=33.56 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=34.7
Q ss_pred CCCeEecChHHhhcCCCEEEEeeCCccHHHH-HHhhccccCCCCEEEEecC
Q psy6714 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVA-LNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 162 ~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V-L~eI~~~L~~g~IVVSiaa 211 (303)
.++....+..++++.+|+||+++....+..+ .+.+...+.++.+||.+-+
T Consensus 52 ~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 52 EGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred cceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 4677778888999999999999987777653 3445544556677776543
No 362
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=72.22 E-value=5 Score=40.81 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=49.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHHH----hhCCCeEe-cChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKAT----GTMGAKIT-FDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~l----~e~Gv~v~-~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
..++++|+|.|.||.+ ++..+ ++..++. ...+.... .+..+.+.++|+||.|+|...- +...
T Consensus 331 ~~k~vlIiGaGgiG~a-ia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--~~~~ 407 (477)
T PRK09310 331 NNQHVAIVGAGGAAKA-IATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--IPKA 407 (477)
T ss_pred CCCEEEEEcCcHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc--chhH
Confidence 3568999999999994 44332 2222222 12222211 1111225689999999986541 1111
Q ss_pred hccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 196 IKPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 196 I~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
+. .+|+.++ ++....-++..-. ..+.++....+.+.++.
T Consensus 408 ----l~--~~v~D~~Y~P~~T~ll~~A~~---~G~~~~~G~~Ml~~Qa~ 447 (477)
T PRK09310 408 ----FP--PCVVDINTLPKHSPYTQYARS---QGSSIIYGYEMFAEQAL 447 (477)
T ss_pred ----Hh--hhEEeccCCCCCCHHHHHHHH---CcCEEECcHHHHHHHHH
Confidence 21 2555443 2332222222211 22456666677776654
No 363
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.10 E-value=11 Score=36.04 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=42.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+...++.|||-+ ..|.+ |+..+. ..|.++ + .+..+.+++||+||.+|. +..+. .+ .++
T Consensus 150 l~Gk~V~ViGrs~~vGrp-la~lL~-------~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~---~~---~vk 215 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRP-MAALLL-------NADATVTICHSKTENLKAELRQADILVSAAGKAGFIT---PD---MVK 215 (279)
T ss_pred CCCCEEEEECCCccccHH-HHHHHH-------hCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccC---HH---HcC
Confidence 345789999988 77875 443321 233432 2 345678899999999996 54322 22 256
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 216 ~GavVIDV 223 (279)
T PRK14178 216 PGATVIDV 223 (279)
T ss_pred CCcEEEEe
Confidence 89998865
No 364
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=71.51 E-value=58 Score=32.38 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred cEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEec-ChHHhhcCCCEEEEee
Q psy6714 134 DKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITF-DNKEVTLNSEVIILAV 184 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~-d~~eav~~ADIVILAV 184 (303)
+|.|||+|..|-+.+++.+.. ..+.+.+.|+.+.. ...+.++++|+||++-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 489999999887436655321 11234556776532 2334456788888764
No 365
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=71.38 E-value=9.3 Score=37.15 Aligned_cols=20 Identities=0% Similarity=-0.202 Sum_probs=15.8
Q ss_pred CCCEEEEeeCCccHHHHHHh
Q psy6714 176 NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~e 195 (303)
++|+||.|+......+.+..
T Consensus 89 gvDiVie~tG~~~s~e~a~~ 108 (325)
T TIGR01532 89 GVDLVLDCTGVYGNREQGER 108 (325)
T ss_pred CCCEEEEccchhccHHHHHH
Confidence 79999999987776666544
No 366
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=70.58 E-value=11 Score=34.14 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEE--cCChhhHHHHHHHHhhcHHHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHH--------HHHHhhccccCC
Q psy6714 135 KQIA--GTTERGPGALIASLNIVSKATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVP--------VALNDIKPVFNE 202 (303)
Q Consensus 135 IgII--GlG~MG~~~La~al~r~~e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~--------~VL~eI~~~L~~ 202 (303)
|+|| |+|+++. +.++ ++..+. ....+.. .++++|.|||.-.-..-. .+...|+..+..
T Consensus 2 i~iidyg~gNl~s--~~~a-------l~~~~~~~~~~~~~~-~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~ 71 (210)
T PRK14004 2 IAILDYGMGNIHS--CLKA-------VSLYTKDFVFTSDPE-TIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVES 71 (210)
T ss_pred EEEEECCCchHHH--HHHH-------HHHcCCeEEEECCHH-HhccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHc
Confidence 8888 8999977 3333 223333 3334444 457899999776542211 122334444556
Q ss_pred CCEEEEecCCCcH
Q psy6714 203 SNLLISVAGGVPI 215 (303)
Q Consensus 203 g~IVVSiaaGV~i 215 (303)
+..|+.++.|..+
T Consensus 72 ~~pilGiC~G~Q~ 84 (210)
T PRK14004 72 GKPLFGICIGFQI 84 (210)
T ss_pred CCCEEEECHhHHH
Confidence 6778888887754
No 367
>KOG1495|consensus
Probab=70.54 E-value=33 Score=33.16 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=36.2
Q ss_pred hhcCCCEEEEeeC--Cc--c------------HHHHHHhhccccCCCCEEEEecCCCcHHHHHh----hCCCCCceEEEe
Q psy6714 173 VTLNSEVIILAVK--PH--I------------VPVALNDIKPVFNESNLLISVAGGVPIKNMEQ----ALPKNSRIIRAM 232 (303)
Q Consensus 173 av~~ADIVILAVp--P~--~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~----~l~~~~~VVr~m 232 (303)
+-+++++||+..- .+ . ++.++.++..+ .++++++-..+++++-.... -||. .+|+...
T Consensus 85 ~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLSgfP~-nRViGsG 162 (332)
T KOG1495|consen 85 VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLSGFPK-NRVIGSG 162 (332)
T ss_pred ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHcCCcc-cceeccC
Confidence 4568999999883 22 1 12223334433 47777777888888765443 2453 4666666
Q ss_pred cCcH
Q psy6714 233 PNTP 236 (303)
Q Consensus 233 Pn~p 236 (303)
.|..
T Consensus 163 cnLD 166 (332)
T KOG1495|consen 163 CNLD 166 (332)
T ss_pred cCcc
Confidence 5544
No 368
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=69.97 E-value=9.4 Score=35.72 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHHH---h-hCC----CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKAT---G-TMG----AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l---~-e~G----v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
...++.|+|.|.+|.+ ++..+ ++..+++ . +++ +.+..+..+.+.++|+||-|+|...-.+
T Consensus 122 ~~k~vlVlGaGg~a~a-i~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~ 200 (278)
T PRK00258 122 KGKRILILGAGGAARA-VILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGE 200 (278)
T ss_pred CCCEEEEEcCcHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCC
Confidence 3567999999999984 44432 2222222 1 221 1221123456788999999997443211
Q ss_pred --HHHhhccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 192 --ALNDIKPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 192 --VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...-....+.++.+|+.++ .+....-|+..-..+ +.++....+.+.|+.
T Consensus 201 ~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G---~~~~~G~~Ml~~Qa~ 252 (278)
T PRK00258 201 LPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQG---ARTIDGLGMLVHQAA 252 (278)
T ss_pred CCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCc---CeecCCHHHHHHHHH
Confidence 0000012345677777664 333333333332222 345556666666653
No 369
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=69.96 E-value=5.6 Score=38.76 Aligned_cols=75 Identities=9% Similarity=-0.046 Sum_probs=42.7
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH--H-------HHhhCC---------CeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS--K-------ATGTMG---------AKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~--e-------~l~e~G---------v~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.++|+| | +|.+|..||-..-.+.. + .+...| +.+..-..+..++.|++|+ ......+..
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s~~~ 80 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQAEH 80 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHHHHH
Confidence 368999 9 79999954443311111 0 111111 1222222345688999999 877766666
Q ss_pred HHhhccccCCCCEEEEecC
Q psy6714 193 LNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaa 211 (303)
..... ..|.+||+-.+
T Consensus 81 ap~a~---~aG~~VIDnSs 96 (322)
T PRK06901 81 LAQAA---EAGCIVIDLYG 96 (322)
T ss_pred HHHHH---HCCCEEEECCh
Confidence 55433 36788886543
No 370
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=69.89 E-value=4 Score=35.12 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.8
Q ss_pred CcEEEEcCChhhHHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a 151 (303)
|||+|+|+|.||. .++..
T Consensus 1 ikv~I~G~GriGr-~v~~~ 18 (149)
T smart00846 1 IKVGINGFGRIGR-LVLRA 18 (149)
T ss_pred CEEEEECcCHHHH-HHHHH
Confidence 6899999999999 55544
No 371
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=69.45 E-value=25 Score=29.04 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=11.7
Q ss_pred cEEEEcCChhhHH
Q psy6714 134 DKQIAGTTERGPG 146 (303)
Q Consensus 134 kIgIIGlG~MG~~ 146 (303)
||.|||+|.+|..
T Consensus 1 ~VliiG~GglGs~ 13 (143)
T cd01483 1 RVLLVGLGGLGSE 13 (143)
T ss_pred CEEEECCCHHHHH
Confidence 5899999999994
No 372
>PLN03075 nicotianamine synthase; Provisional
Probab=68.49 E-value=24 Score=34.02 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.9
Q ss_pred hcCCCEEEEeeC----CccHHHHHHhhccccCCCCEEE
Q psy6714 174 TLNSEVIILAVK----PHIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 174 v~~ADIVILAVp----P~~v~~VL~eI~~~L~~g~IVV 207 (303)
..+.|+||+.+- ...=..+++.+...+++|-+++
T Consensus 193 l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 193 LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEE
Confidence 357999999972 2455688888888888887666
No 373
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=68.25 E-value=12 Score=40.79 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=20.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKAT 159 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l 159 (303)
..+|+++|+|++|.+ ++..+.+..+.+
T Consensus 458 ~i~i~l~G~G~VG~~-l~~~l~~~~~~l 484 (810)
T PRK09466 458 RIGLVLFGKGNIGSR-WLELFAREQSTL 484 (810)
T ss_pred eEEEEEEecCCChHH-HHHHHHHHHHHH
Confidence 568999999999994 776655554444
No 374
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=68.14 E-value=21 Score=35.39 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=19.0
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+-++.++
T Consensus 127 ~~~~~~~D~Vvd~~d~~~~r~~ln~~ 152 (392)
T PRK07878 127 VELFSQYDLILDGTDNFATRYLVNDA 152 (392)
T ss_pred HHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 45788999999998766666555544
No 375
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.77 E-value=18 Score=35.32 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=18.9
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+-++..+
T Consensus 113 ~~~~~~~DvVvd~~d~~~~r~~~n~~ 138 (355)
T PRK05597 113 LDELRDADVILDGSDNFDTRHLASWA 138 (355)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 46788999999999765555555443
No 376
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=67.76 E-value=14 Score=31.88 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=17.0
Q ss_pred CeEecChHHhhcCCCEEEEeeCC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP 186 (303)
+.++.+..++++++|+|..-.=.
T Consensus 61 i~~~~~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 61 ITITDDIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp EEEESSHHHHHTT-SEEEEESSS
T ss_pred eEEEeCHHHhcCCCCEEEEcCcc
Confidence 46678888999999998776643
No 377
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=67.40 E-value=16 Score=35.58 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.0
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.++++++|+||.|+.......++.++.
T Consensus 111 ~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 111 EELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456889999999997666666665543
No 378
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.36 E-value=17 Score=34.84 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCe--Ee----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAK--IT----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~--v~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+.... .. .|.+ ++ .+..+.+++||+||.|+. |..+. .+++++
T Consensus 156 ~Gk~vvViGrS~iVG~P-la~lL~~~~-~~--~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~------~~~vk~ 225 (286)
T PRK14184 156 AGKKAVVVGRSNIVGKP-LALMLGAPG-KF--ANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVT------ADMVKP 225 (286)
T ss_pred CCCEEEEECCCccchHH-HHHHHhCCc-cc--CCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCC------HHHcCC
Confidence 35789999955 56776 443322100 00 2232 22 345678899999999995 54432 123568
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 226 GavVIDV 232 (286)
T PRK14184 226 GAVVVDV 232 (286)
T ss_pred CCEEEEe
Confidence 8888865
No 379
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.33 E-value=10 Score=37.82 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=31.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------c---HHHHhhCCCeEecChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------V---SKATGTMGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~---~e~l~e~Gv~v~~d~~eav~~ADIVILAV 184 (303)
..+||.|||+|..|- +++..+.. . ...+.+.|+.......+.+.++|+||.+-
T Consensus 8 ~~~~i~viG~G~~G~-~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp 73 (460)
T PRK01390 8 AGKTVAVFGLGGSGL-ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSP 73 (460)
T ss_pred CCCEEEEEeecHhHH-HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECC
Confidence 356899999999998 34544321 1 11244567764332223456899998753
No 380
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=66.75 E-value=5.9 Score=37.32 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=31.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHHHh----hCC----CeEec---ChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKATG----TMG----AKITF---DNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~l~----e~G----v~v~~---d~~eav~~ADIVILAVpP~ 187 (303)
.+++.|||.|.+|.+ ++..+ +++.++.+ .++ +.... +..+.+.++|+||-|+|..
T Consensus 125 ~k~vlvlGaGGaara-i~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 125 GFRGLVIGAGGTSRA-AVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred CceEEEEcCcHHHHH-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 457999999999994 44331 23333322 111 11111 1224457899999999743
No 381
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=66.17 E-value=14 Score=34.71 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=9.8
Q ss_pred CCcEEEEcCCh
Q psy6714 132 RSDKQIAGTTE 142 (303)
Q Consensus 132 ~mkIgIIGlG~ 142 (303)
.||+.|||.|.
T Consensus 2 ~~~VyFIGAGP 12 (254)
T COG2875 2 AMKVYFIGAGP 12 (254)
T ss_pred CceEEEEccCC
Confidence 58999999987
No 382
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.11 E-value=61 Score=32.13 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=13.3
Q ss_pred cEEEEcCChhhHHHHHHH
Q psy6714 134 DKQIAGTTERGPGALIAS 151 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~a 151 (303)
||.|||+|..|-. .+..
T Consensus 2 ~v~viG~G~sG~s-~a~~ 18 (459)
T PRK02705 2 IAHVIGLGRSGIA-AARL 18 (459)
T ss_pred eEEEEccCHHHHH-HHHH
Confidence 6999999999983 4443
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=65.04 E-value=23 Score=31.90 Aligned_cols=64 Identities=8% Similarity=0.005 Sum_probs=35.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------c---HHHHhhC-CCeEec-C-hHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------V---SKATGTM-GAKITF-D-NKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~---~e~l~e~-Gv~v~~-d-~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+...++.|||.|.+|...+...++. . ...+.+. .+.+.. + ..+.++++|+||+|+....+..-+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i 86 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRV 86 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHH
Confidence 3457899999999998432222111 0 1122233 233311 1 134567899999998766554433
No 384
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.02 E-value=28 Score=36.66 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=43.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCeEe-cC--hHHh-----hcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAKIT-FD--NKEV-----TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~v~-~d--~~ea-----v~~ADIVILAVpP~~v~ 190 (303)
..+|-|+|.|.+|. .++..+.+ +. +.+++.|..+. .| ..++ ++++|.||+++..+...
T Consensus 400 ~~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGFGRFGQ-IVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEecChHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 35699999999999 57665332 22 23456677543 22 2222 45899999999765443
Q ss_pred -HHHHhhccccCCCCEEE
Q psy6714 191 -VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 -~VL~eI~~~L~~g~IVV 207 (303)
.++..++....+-++++
T Consensus 479 ~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIA 496 (621)
T ss_pred HHHHHHHHHhCCCCeEEE
Confidence 34444444332224444
No 385
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=64.91 E-value=1e+02 Score=30.32 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=30.2
Q ss_pred cEEEEcCChhhHHHHHHHHhhc---------------HH---HHh-hCCCeEec-ChHHhhcCCCEEEEee
Q psy6714 134 DKQIAGTTERGPGALIASLNIV---------------SK---ATG-TMGAKITF-DNKEVTLNSEVIILAV 184 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~r~---------------~e---~l~-e~Gv~v~~-d~~eav~~ADIVILAV 184 (303)
||.|||+|..|- .+++.+.+. .. .+. ..|+.+.. ...+.+.++|+||.+-
T Consensus 1 ~~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGR-AVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 589999999998 566553211 11 122 24776532 2244567788888876
No 386
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.48 E-value=41 Score=26.29 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=18.0
Q ss_pred hHHhhcCCCEEEEeeC--CccHHHHHHhh
Q psy6714 170 NKEVTLNSEVIILAVK--PHIVPVALNDI 196 (303)
Q Consensus 170 ~~eav~~ADIVILAVp--P~~v~~VL~eI 196 (303)
....++++|+||+.+. ...+...+++.
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKA 70 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHH
Confidence 3567889999999995 44444444444
No 387
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=64.47 E-value=15 Score=34.13 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEe-----cChHHhhcCCCEEEEeeC-CccHHHHHH------hhccc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT-----FDNKEVTLNSEVIILAVK-PHIVPVALN------DIKPV 199 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~-----~d~~eav~~ADIVILAVp-P~~v~~VL~------eI~~~ 199 (303)
.+||+||-+-.... ......++..+.+.++|+.+. .+..+.+.+||+|+++-- ...+..+++ .|+..
T Consensus 31 ~~~v~fIPtAs~~~-~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 31 RRKAVFIPYAGVTQ-SWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCeEEEECCCCCCC-CHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 57899998754332 112222345556777887642 334556889999999874 444444443 24444
Q ss_pred cCCCCEEEEecCCCcH
Q psy6714 200 FNESNLLISVAGGVPI 215 (303)
Q Consensus 200 L~~g~IVVSiaaGV~i 215 (303)
+..|.+++-+++|--+
T Consensus 110 ~~~G~~~~G~SAGAii 125 (233)
T PRK05282 110 VKNGTPYIGWSAGANV 125 (233)
T ss_pred HHCCCEEEEECHHHHh
Confidence 5578888877776543
No 388
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.22 E-value=6.5 Score=38.85 Aligned_cols=84 Identities=8% Similarity=0.085 Sum_probs=46.7
Q ss_pred cEEEEcCChhhHHHHHHH---HhhcHHHHhhCCCeEecCh----HHhhcCCCEEEE--eeCCccHHHHHHhhccccCCCC
Q psy6714 134 DKQIAGTTERGPGALIAS---LNIVSKATGTMGAKITFDN----KEVTLNSEVIIL--AVKPHIVPVALNDIKPVFNESN 204 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~a---l~r~~e~l~e~Gv~v~~d~----~eav~~ADIVIL--AVpP~~v~~VL~eI~~~L~~g~ 204 (303)
+|-+||.|.||.+-|-+. ++-..+++ .+ -|+ ...+.+-.|=|+ ++.++...+||.++..-....-
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~-----~v-iDp~ek~~k~~~~~girfV~e~it~~Nyk~vL~pll~~~~gqg 88 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRM-----VV-IDPREKDRKILDERGIRFVQEAITRDNYKDVLKPLLKGVGGQG 88 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhhe-----EE-echhHHHHHHHHhhhhHHHHHhcChhhHHHHHHHHhhcCCCce
Confidence 699999999998543322 22222111 11 111 112222222233 4568888999888765444455
Q ss_pred EEEEecCCCcHHHHHhhCC
Q psy6714 205 LLISVAGGVPIKNMEQALP 223 (303)
Q Consensus 205 IVVSiaaGV~ie~L~~~l~ 223 (303)
++|.++-.++...|-+++.
T Consensus 89 f~vnLSvd~~s~Dlmr~cr 107 (481)
T COG5310 89 FCVNLSVDTSSLDLMRLCR 107 (481)
T ss_pred EEEEeEeccchhHHHHHHH
Confidence 7887766666666666664
No 389
>PRK07877 hypothetical protein; Provisional
Probab=63.99 E-value=16 Score=39.31 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.8
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..++++++|+||=|+.....+-++.+.
T Consensus 190 ~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 190 VDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred HHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 345678999999999877777666544
No 390
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=63.80 E-value=19 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHH---------------Hh-------hcHHHHhhCC--CeEecChHHhhcCCCEEEEee
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIAS---------------LN-------IVSKATGTMG--AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~a---------------l~-------r~~e~l~e~G--v~v~~d~~eav~~ADIVILAV 184 (303)
+..+|+.++|-| +|+. +|... +. ...+.+++.| +.++.|+.++++++|+|.-=|
T Consensus 151 l~g~k~a~vGDgNNv~n-Sl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDv 229 (310)
T COG0078 151 LKGLKLAYVGDGNNVAN-SLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDV 229 (310)
T ss_pred ccCcEEEEEcCcchHHH-HHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecC
Confidence 567899999955 6776 33322 01 1111233446 567789999999999998766
No 391
>PLN02775 Probable dihydrodipicolinate reductase
Probab=63.37 E-value=67 Score=30.87 Aligned_cols=88 Identities=9% Similarity=0.045 Sum_probs=48.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc-HH------------H----HhhCCCeEe--cChHHhh-----cCCC-EEEEeeC
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV-SK------------A----TGTMGAKIT--FDNKEVT-----LNSE-VIILAVK 185 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~-~e------------~----l~e~Gv~v~--~d~~eav-----~~AD-IVILAVp 185 (303)
.++|.|.| .|.||. .++...... .+ . +...++.+. .|..+++ +.+| |+|=-+.
T Consensus 11 ~i~V~V~Ga~G~MG~-~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~ 89 (286)
T PLN02775 11 AIPIMVNGCTGKMGH-AVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTL 89 (286)
T ss_pred CCeEEEECCCChHHH-HHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCC
Confidence 36899999 899999 455543221 00 0 001133444 5666655 2478 4444456
Q ss_pred CccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP 223 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~ 223 (303)
|..+.+.++.... .+.-+|.-..|.+.++++++..
T Consensus 90 P~a~~~~~~~~~~---~g~~~VvGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 90 PDAVNDNAELYCK---NGLPFVMGTTGGDRDRLLKDVE 124 (286)
T ss_pred hHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHh
Confidence 7777777665432 2333343445777777766544
No 392
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=63.17 E-value=14 Score=39.92 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=34.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEe-cChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKIT-FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~-~d~~eav~~ADIVILAV 184 (303)
+++|.|||+|..|-+.|++.+.. ..+.+.+.|+.+. ....+.+..+|+||++-
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSS 71 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECC
Confidence 34599999999998555655321 1124566788763 23345567899999875
No 393
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.04 E-value=16 Score=37.02 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=34.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cH---HHHhhC--CCeEec--ChHHhhcCCCEEEEe--eCCc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VS---KATGTM--GAKITF--DNKEVTLNSEVIILA--VKPH 187 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~---e~l~e~--Gv~v~~--d~~eav~~ADIVILA--VpP~ 187 (303)
.+++|+|||+|..|- +++..+.. .. +.+.+. |+.+.. ...+.++++|+||++ +++.
T Consensus 6 ~~~~i~v~G~G~sG~-s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~ 82 (498)
T PRK02006 6 QGPMVLVLGLGESGL-AMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPL 82 (498)
T ss_pred CCCEEEEEeecHhHH-HHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCc
Confidence 356799999999998 46655321 11 224444 444422 244567789999997 4553
No 394
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=62.23 E-value=61 Score=29.78 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=20.0
Q ss_pred HHhhcCCCEEEEeeC--CccHHHHHHhhcccc
Q psy6714 171 KEVTLNSEVIILAVK--PHIVPVALNDIKPVF 200 (303)
Q Consensus 171 ~eav~~ADIVILAVp--P~~v~~VL~eI~~~L 200 (303)
.+.++.+|-||+++| -..+..+|+...+++
T Consensus 85 ~~~v~~ADgvii~TPEYn~sipg~LKNaiDwl 116 (219)
T TIGR02690 85 RQLSEWSEGQVWCSPERHGAITGSQKDQIDWI 116 (219)
T ss_pred HHHHHhCCEEEEeCCccccCcCHHHHHHHHhc
Confidence 356778999999998 334556665544433
No 395
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=62.15 E-value=18 Score=33.46 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------cHH---HHhhCC-CeEecC--hHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------VSK---ATGTMG-AKITFD--NKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e~G-v~v~~d--~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
..+++-|||.|.++..-+...++. ..+ .+.+.| +++... ..+.++.+++||.|+....+..-+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~ 103 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIR 103 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHH
Confidence 467899999999997322222111 001 122222 332211 1234678999999999888877766
Q ss_pred hhc
Q psy6714 195 DIK 197 (303)
Q Consensus 195 eI~ 197 (303)
...
T Consensus 104 ~~a 106 (223)
T PRK05562 104 KHC 106 (223)
T ss_pred HHH
Confidence 554
No 396
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.96 E-value=40 Score=34.68 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=42.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCeE-ecC--hHHh-----hcCCCEEEEeeCCccHH-
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAKI-TFD--NKEV-----TLNSEVIILAVKPHIVP- 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~v-~~d--~~ea-----v~~ADIVILAVpP~~v~- 190 (303)
-.|-|+|+|.+|. .++..+.+ +. +.+++.|..+ ..| ..++ ++++|.|+++++.+.-.
T Consensus 418 ~hiiI~G~G~~G~-~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGS-LLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 4599999999999 57766432 22 2345667643 222 2222 45889899888755433
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++..++... ++.-||.-
T Consensus 497 ~iv~~~~~~~-~~~~iiar 514 (558)
T PRK10669 497 EIVASAREKR-PDIEIIAR 514 (558)
T ss_pred HHHHHHHHHC-CCCeEEEE
Confidence 2333333322 34344443
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.07 E-value=1.6e+02 Score=29.07 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCCcEEEEcCChhhHHHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a 151 (303)
..++|.|+|.|.+|.+ ++..
T Consensus 4 ~~~~~~v~G~g~~G~~-~a~~ 23 (445)
T PRK04308 4 QNKKILVAGLGGTGIS-MIAY 23 (445)
T ss_pred CCCEEEEECCCHHHHH-HHHH
Confidence 3568999999988873 4443
No 398
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=60.74 E-value=18 Score=33.31 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=31.7
Q ss_pred hhCCCeEecChHHhh-cCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 160 GTMGAKITFDNKEVT-LNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 160 ~e~Gv~v~~d~~eav-~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.++|+.+..+.++++ .+.|+|++|+++....++..++..
T Consensus 20 ~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~ 59 (229)
T TIGR03855 20 ERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK 59 (229)
T ss_pred HHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 456787788888876 579999999999999888877653
No 399
>PRK08328 hypothetical protein; Provisional
Probab=60.43 E-value=32 Score=31.42 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.5
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...+|.|||+|.+|..
T Consensus 25 L~~~~VlIiG~GGlGs~ 41 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSP 41 (231)
T ss_pred HhCCcEEEECCCHHHHH
Confidence 45678999999999984
No 400
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.74 E-value=1.4e+02 Score=29.40 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.6
Q ss_pred CCcEEEEcCChhhHHHH
Q psy6714 132 RSDKQIAGTTERGPGAL 148 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~L 148 (303)
.++|+|||+|..|-+.+
T Consensus 6 ~~~i~v~G~G~sG~s~~ 22 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCV 22 (438)
T ss_pred CCEEEEEeeCHHHHHHH
Confidence 45799999999998433
No 401
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.05 E-value=1.5e+02 Score=29.41 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=30.5
Q ss_pred CcEEEEcCChhhHHHHHHHHhh------------c---HHHHhh--CCCeEec--ChHHhhcCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASLNI------------V---SKATGT--MGAKITF--DNKEVTLNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r------------~---~e~l~e--~Gv~v~~--d~~eav~~ADIVILAV 184 (303)
-.|.|||+|..|- +++..+.. . .+.+.+ .|+.+.. ...+.+.++|+||.+-
T Consensus 7 ~~~~v~G~G~sG~-s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGL-SVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHH-HHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 3599999999998 46655321 1 122433 3665532 2344566788887764
No 402
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.84 E-value=24 Score=35.86 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=33.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEec--ChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITF--DNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~--d~~eav~~ADIVILAV 184 (303)
.+++.|+|+|..|.+ .+..+. .. .+.+++.|+.+.. +..+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~a-a~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRA-VLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 468999999999984 443321 11 1234556876532 3345577899999987
No 403
>CHL00194 ycf39 Ycf39; Provisional
Probab=58.14 E-value=22 Score=33.38 Aligned_cols=52 Identities=15% Similarity=0.028 Sum_probs=32.3
Q ss_pred CcEEEEc-CChhhHHHHHHHHh----------hcHHH---HhhCCCeEe----cC---hHHhhcCCCEEEEeeC
Q psy6714 133 SDKQIAG-TTERGPGALIASLN----------IVSKA---TGTMGAKIT----FD---NKEVTLNSEVIILAVK 185 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~----------r~~e~---l~e~Gv~v~----~d---~~eav~~ADIVILAVp 185 (303)
|||.|+| +|.+|. .++..+. +..+. +...|+.+. .+ ..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~-~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGR-QIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHH-HHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 7899998 899999 4654431 12111 223466532 12 3456789999998864
No 404
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=57.96 E-value=45 Score=34.13 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=29.9
Q ss_pred cEEEEcCChhhHHHHHHHHh--------------hcHHHHhhCCCeEecC-hHHhhcCCCEEEEee
Q psy6714 134 DKQIAGTTERGPGALIASLN--------------IVSKATGTMGAKITFD-NKEVTLNSEVIILAV 184 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~--------------r~~e~l~e~Gv~v~~d-~~eav~~ADIVILAV 184 (303)
+|.|||-|.+|-+.|+.-+. ..-+++++.|+.+... .++-+.+.|+||.+.
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~ 74 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSN 74 (459)
T ss_pred eEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEec
Confidence 69999988877544554321 1224567778765432 223355667666655
No 405
>PLN02700 homoserine dehydrogenase family protein
Probab=55.73 E-value=13 Score=37.10 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcHHHHhhCC
Q psy6714 133 SDKQIAGTTERGPGALIASLNIVSKATGTMG 163 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~~e~l~e~G 163 (303)
.+|+|||+|++|. .|+..+....+.+++.|
T Consensus 4 i~i~liG~G~VG~-~ll~ql~~~~~~~~~~g 33 (377)
T PLN02700 4 IPVLLLGCGGVGR-HLLRHIVSCRSLHAKQG 33 (377)
T ss_pred EEEEEEecChHHH-HHHHHHHHHHHHHHhcC
Confidence 4799999999999 46665444333333333
No 406
>KOG4777|consensus
Probab=55.65 E-value=16 Score=35.08 Aligned_cols=36 Identities=6% Similarity=0.125 Sum_probs=22.0
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEe
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSi 209 (303)
.+-+..|||||.....+...++=+... ..+.+|||-
T Consensus 72 ~~~F~ecDIvfsgldad~ageiek~f~---eag~iiVsN 107 (361)
T KOG4777|consen 72 ADSFNECDIVFSGLDADIAGEIEKLFA---EAGTIIVSN 107 (361)
T ss_pred hhhcccccEEEecCCchhhhhhhHHHH---hcCeEEEeC
Confidence 455789999999987655444433222 245566653
No 407
>PRK14852 hypothetical protein; Provisional
Probab=55.61 E-value=31 Score=38.55 Aligned_cols=17 Identities=35% Similarity=0.184 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...||+|||+|.+|+.
T Consensus 330 L~~srVlVvGlGGlGs~ 346 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGI 346 (989)
T ss_pred HhcCcEEEECCcHHHHH
Confidence 55689999999999983
No 408
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=55.36 E-value=34 Score=33.08 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=34.5
Q ss_pred cEEEEcCChhhHHHHHHHH-----------hhcHH---HHhh-CCCeEecChH---------Hhh--cCCCEEEEeeC-C
Q psy6714 134 DKQIAGTTERGPGALIASL-----------NIVSK---ATGT-MGAKITFDNK---------EVT--LNSEVIILAVK-P 186 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al-----------~r~~e---~l~e-~Gv~v~~d~~---------eav--~~ADIVILAVp-P 186 (303)
++.|+|+|.||- +.+... +...+ .+++ .|.....++. +.- ..+|++|-|+- +
T Consensus 171 ~V~V~GaGpIGL-la~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 171 TVVVVGAGPIGL-LAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred EEEEECCCHHHH-HHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 799999999998 433221 22222 3345 4555433221 111 24899999996 3
Q ss_pred ccHHHHHHhhc
Q psy6714 187 HIVPVALNDIK 197 (303)
Q Consensus 187 ~~v~~VL~eI~ 197 (303)
..+...++-++
T Consensus 250 ~~~~~ai~~~r 260 (350)
T COG1063 250 PALDQALEALR 260 (350)
T ss_pred HHHHHHHHHhc
Confidence 33444444333
No 409
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=55.11 E-value=45 Score=31.88 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.1
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...+|.|+|+|.+|..
T Consensus 17 L~~s~VLIvG~gGLG~E 33 (286)
T cd01491 17 LQKSNVLISGLGGLGVE 33 (286)
T ss_pred HhcCcEEEEcCCHHHHH
Confidence 34568999999999984
No 410
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=54.98 E-value=45 Score=32.64 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.++
T Consensus 220 ~~~~~~~D~Vv~~~d~~~~r~~ln~~ 245 (376)
T PRK08762 220 EALLQDVDVVVDGADNFPTRYLLNDA 245 (376)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 34678899999999765555555444
No 411
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=54.81 E-value=32 Score=36.51 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=34.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH--------------------h---hcHHHHhhC--CCeE-------ecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL--------------------N---IVSKATGTM--GAKI-------TFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--------------------~---r~~e~l~e~--Gv~v-------~~d~~eav~~ADI 179 (303)
..||+|||+|.+|. .++.++ + +..+.++++ ++.+ ..+..++++..|+
T Consensus 129 ~akVlVlG~Gg~~s-~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~Di 207 (637)
T TIGR03693 129 NAKILAAGSGDFLT-KLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADW 207 (637)
T ss_pred cccEEEEecCchHH-HHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcE
Confidence 56899999999998 455431 1 111222222 2321 2345678889999
Q ss_pred EEEeeCCccHH
Q psy6714 180 IILAVKPHIVP 190 (303)
Q Consensus 180 VILAVpP~~v~ 190 (303)
||..+......
T Consensus 208 Vi~vsDdy~~~ 218 (637)
T TIGR03693 208 VLYVSDNGDID 218 (637)
T ss_pred EEEECCCCChH
Confidence 88888644433
No 412
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=54.55 E-value=80 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=13.2
Q ss_pred CCcEEEEc-CChhhHH
Q psy6714 132 RSDKQIAG-TTERGPG 146 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~ 146 (303)
|++|+|+| +|.||..
T Consensus 1 mk~VaILGsTGSIG~~ 16 (385)
T PRK05447 1 MKRITILGSTGSIGTQ 16 (385)
T ss_pred CceEEEEcCChHHHHH
Confidence 46899999 9999994
No 413
>PRK14982 acyl-ACP reductase; Provisional
Probab=54.36 E-value=20 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=43.2
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHh------------hcHHHHh----hCCCeEecChHHhhcCCCEEEEeeC-CccH-H
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLN------------IVSKATG----TMGAKITFDNKEVTLNSEVIILAVK-PHIV-P 190 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~------------r~~e~l~----e~Gv~v~~d~~eav~~ADIVILAVp-P~~v-~ 190 (303)
+..++|.|+|. |.||. .+++.+. +..+++. +++.....+..+++.++|+||.++- +..+ .
T Consensus 153 l~~k~VLVtGAtG~IGs-~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~~I 231 (340)
T PRK14982 153 LSKATVAVVGATGDIGS-AVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGVEI 231 (340)
T ss_pred cCCCEEEEEccChHHHH-HHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCCcC
Confidence 45678999997 89999 5665542 1112221 2221111345577889999999885 3332 1
Q ss_pred HHHHhhccccCCCCEEEEecCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaG 212 (303)
+- +. ++++.+||.+.-+
T Consensus 232 ~~-~~----l~~~~~viDiAvP 248 (340)
T PRK14982 232 DP-ET----LKKPCLMIDGGYP 248 (340)
T ss_pred CH-HH----hCCCeEEEEecCC
Confidence 11 12 2356677766433
No 414
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=54.26 E-value=50 Score=31.96 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=19.2
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.+++.|+||.|+.....+..+.++
T Consensus 85 ~~f~~~~DvVv~a~Dn~~ar~~in~~ 110 (312)
T cd01489 85 VEFFKQFDLVFNALDNLAARRHVNKM 110 (312)
T ss_pred HHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 36678999999999766666555544
No 415
>PRK10637 cysG siroheme synthase; Provisional
Probab=53.92 E-value=38 Score=34.21 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=36.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCC-CeEecC--hHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VS---KATGTMG-AKITFD--NKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~G-v~v~~d--~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+..+++.|||.|.++..-+...++. .. ..+.+.| +..... ..+.++++++||.|+....+..-+
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i 89 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRV 89 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHHH
Confidence 4568999999999997322222110 00 1122222 222211 124467899999999877776554
No 416
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=53.55 E-value=26 Score=34.83 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=34.5
Q ss_pred cEEEEcCChhhHHHHHHHHhh---------------cHHHHhhCCCeEe--cChHHhhcCCCEEEEee--CCc
Q psy6714 134 DKQIAGTTERGPGALIASLNI---------------VSKATGTMGAKIT--FDNKEVTLNSEVIILAV--KPH 187 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~r---------------~~e~l~e~Gv~v~--~d~~eav~~ADIVILAV--pP~ 187 (303)
+|.|||.|.+|-..|++.+.+ ..+.+++.|+.+. .+.....+++|+||++- ++.
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~ 73 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRG 73 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCC
Confidence 489999999997556665321 1123556788764 33444455799998875 544
No 417
>PRK08223 hypothetical protein; Validated
Probab=53.30 E-value=61 Score=31.09 Aligned_cols=17 Identities=29% Similarity=0.163 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...+|.|||+|.+|+.
T Consensus 25 L~~s~VlIvG~GGLGs~ 41 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGI 41 (287)
T ss_pred HhcCCEEEECCCHHHHH
Confidence 45679999999999984
No 418
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=53.19 E-value=38 Score=32.97 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=33.8
Q ss_pred ccCCCcEEEEcCC--hhhHHHHHHHHhh------------------cH----HHHhhCC--CeEecChHHhhcCCCEEEE
Q psy6714 129 RWNRSDKQIAGTT--ERGPGALIASLNI------------------VS----KATGTMG--AKITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 129 ~~~~mkIgIIGlG--~MG~~~La~al~r------------------~~----e~l~e~G--v~v~~d~~eav~~ADIVIL 182 (303)
.+...||+|||-+ ++.. +++..+.. .. +.+++.| +.++.|..++++++|+|..
T Consensus 152 ~l~g~kia~vGD~~~~v~~-Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~ 230 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVAN-ALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYT 230 (332)
T ss_pred CcCCcEEEEecCCCcchHH-HHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEE
Confidence 4567899999965 4444 44433111 01 1123456 4567888999999999988
Q ss_pred e
Q psy6714 183 A 183 (303)
Q Consensus 183 A 183 (303)
-
T Consensus 231 ~ 231 (332)
T PRK04284 231 D 231 (332)
T ss_pred C
Confidence 4
No 419
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=52.97 E-value=17 Score=35.68 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.8
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
++||||-|.|-||. .++++
T Consensus 1 ~ikV~INGfGrIGR-~v~ra 19 (335)
T COG0057 1 MIKVAINGFGRIGR-LVARA 19 (335)
T ss_pred CcEEEEecCcHHHH-HHHHH
Confidence 47999999999999 56554
No 420
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=52.95 E-value=12 Score=36.03 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH---------HH--HhhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS---------KA--TGTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~---------e~--l~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~eI~ 197 (303)
..||.|.| +|.-|. ........+- .. -.-.|+.+..+..|+-+. .|+.+|+||+..+.+++++..
T Consensus 12 ~~~v~~~gi~~~~~~-~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~al~e~~ 90 (300)
T PLN00125 12 NTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAM 90 (300)
T ss_pred CCeEEEecCCCHHHH-HHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHH
Confidence 57899999 888887 3332221111 11 112466777777777765 799999999999999998876
Q ss_pred cccCCCCEEEEecCCCcH
Q psy6714 198 PVFNESNLLISVAGGVPI 215 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~i 215 (303)
.. .=+.+|=+.+|+..
T Consensus 91 ~~--Gvk~~vIisaGf~e 106 (300)
T PLN00125 91 EA--ELDLVVCITEGIPQ 106 (300)
T ss_pred Hc--CCCEEEEECCCCCc
Confidence 42 11233435667753
No 421
>PLN02477 glutamate dehydrogenase
Probab=52.62 E-value=28 Score=35.06 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred cCCCEEEEeeCCccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcH
Q psy6714 175 LNSEVIILAVKPHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p 236 (303)
.+|||+|-|=-...+. +.+.. + .-++|+--+++-....-.+.|.. +-|.++|..-
T Consensus 280 ~~~DvliP~Al~~~I~~~na~~----i-~ak~I~egAN~p~t~ea~~~L~~--rGI~~~PD~~ 335 (410)
T PLN02477 280 EPCDVLIPAALGGVINKENAAD----V-KAKFIVEAANHPTDPEADEILRK--KGVVVLPDIY 335 (410)
T ss_pred ccccEEeeccccccCCHhHHHH----c-CCcEEEeCCCCCCCHHHHHHHHH--CCcEEEChHH
Confidence 4899999985433332 23333 3 33577777665544444455532 3566667654
No 422
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=52.34 E-value=27 Score=31.83 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=37.7
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHHHH----hhCCCeEe---cChHHhhcCCCEEEEeeCCccHHH
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSKAT----GTMGAKIT---FDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l----~e~Gv~v~---~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
++..+++.|||.|..|.--+-..++ ...+.+ .+.++... .+..+ +.++++||.|+....+.+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~ 87 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNE 87 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHH
Confidence 4567899999999999732221111 111111 12232221 22233 445999999999887776
Q ss_pred HHHh
Q psy6714 192 ALND 195 (303)
Q Consensus 192 VL~e 195 (303)
-+.+
T Consensus 88 ~i~~ 91 (210)
T COG1648 88 RIAK 91 (210)
T ss_pred HHHH
Confidence 6543
No 423
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.78 E-value=32 Score=32.00 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL 152 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al 152 (303)
+.|++|||.|+||+..+.+.+
T Consensus 4 k~kvaiigsgni~tdlm~k~l 24 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKIL 24 (310)
T ss_pred cceEEEEccCcccHHHHHHHH
Confidence 568999999999996555544
No 424
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=51.77 E-value=1.2e+02 Score=28.84 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=20.8
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCC
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP 186 (303)
..|+.+..+.+++++++|+||+.+|+
T Consensus 40 ~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 40 FTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred cCCceeeccHHHHhccCCEEEECCcc
Confidence 34666666777889999999999876
No 425
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=51.72 E-value=54 Score=31.03 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=42.7
Q ss_pred CCcEEEEcCChhhHHHHH-HHHhhcHHH--H----hhCCCeEecChHH-----h--hcCCCEEEEeeC------CccHHH
Q psy6714 132 RSDKQIAGTTERGPGALI-ASLNIVSKA--T----GTMGAKITFDNKE-----V--TLNSEVIILAVK------PHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La-~al~r~~e~--l----~e~Gv~v~~d~~e-----a--v~~ADIVILAVp------P~~v~~ 191 (303)
+.|||||=+|++|.+.+. +.+++..++ + .-.|.+......+ . -.+.|++|+--| |...++
T Consensus 2 vvKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE 81 (277)
T PRK00994 2 VVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKARE 81 (277)
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHH
Confidence 569999999999994333 223332221 1 0112221111111 1 136898887665 344556
Q ss_pred HHHhhccccCCCCEEEEecCCCcHH
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
++.... --+||||...+.+..
T Consensus 82 ~l~~~~----iP~IvI~D~p~~K~~ 102 (277)
T PRK00994 82 ILKAAG----IPCIVIGDAPGKKVK 102 (277)
T ss_pred HHHhcC----CCEEEEcCCCccchH
Confidence 655421 236888887777653
No 426
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=51.53 E-value=80 Score=29.16 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=19.5
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.+++.|+||.|+.....+..+.++
T Consensus 86 ~~f~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 86 DTFFEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred HHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 35678999999999766666666554
No 427
>PRK09271 flavodoxin; Provisional
Probab=51.43 E-value=55 Score=27.89 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=18.0
Q ss_pred hcCCCEEEEeeC-------CccHHHHHHhhccc
Q psy6714 174 TLNSEVIILAVK-------PHIVPVALNDIKPV 199 (303)
Q Consensus 174 v~~ADIVILAVp-------P~~v~~VL~eI~~~ 199 (303)
+.++|+|||+++ |..+..++..+...
T Consensus 49 ~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~ 81 (160)
T PRK09271 49 PEDYDLYLLGTWTDNAGRTPPEMKRFIAELAET 81 (160)
T ss_pred cccCCEEEEECcccCCCcCCHHHHHHHHHHHHH
Confidence 346899999995 33466777666553
No 428
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=51.23 E-value=14 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL 152 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al 152 (303)
|++|||||.|..|. ||+.+.
T Consensus 2 ~~~igilG~Gql~~-ml~~aa 21 (372)
T PRK06019 2 MKTIGIIGGGQLGR-MLALAA 21 (372)
T ss_pred CCEEEEECCCHHHH-HHHHHH
Confidence 57899999999999 787653
No 429
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=50.54 E-value=20 Score=33.49 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.5
Q ss_pred CcEEEEc-CChhhHHHHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIAS 151 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~a 151 (303)
|||.|+| .|.+|. .|...
T Consensus 1 MriLI~GasG~lG~-~l~~~ 19 (286)
T PF04321_consen 1 MRILITGASGFLGS-ALARA 19 (286)
T ss_dssp EEEEEETTTSHHHH-HHHHH
T ss_pred CEEEEECCCCHHHH-HHHHH
Confidence 8999999 799999 45433
No 430
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=49.43 E-value=36 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=26.6
Q ss_pred CcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEE
Q psy6714 133 SDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 133 mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVIL 182 (303)
|||+|| |.|+... +.. .+++.|+. +..+. +.+.++|.|||
T Consensus 1 m~i~iid~g~gn~~s--~~~-------~l~~~g~~~~~v~~~-~~~~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSS--VKF-------AIERLGYEPVVSRDP-DVILAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHH--HHH-------HHHHCCCeEEEECCH-HHhCCCCEEEE
Confidence 789999 7888877 443 33345553 44444 44677999998
No 431
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=48.40 E-value=60 Score=31.14 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=18.4
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+.+.+++.|+||.|+.....+..+.+
T Consensus 82 ~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 82 DEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred hHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 35678899999999976555544433
No 432
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=48.29 E-value=53 Score=31.10 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=14.1
Q ss_pred cCCCcEEEEcCChhhH
Q psy6714 130 WNRSDKQIAGTTERGP 145 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~ 145 (303)
+...+|.|||+|.+|.
T Consensus 28 L~~s~VlVvG~GGVGs 43 (268)
T PRK15116 28 FADAHICVVGIGGVGS 43 (268)
T ss_pred hcCCCEEEECcCHHHH
Confidence 4567899999999999
No 433
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.18 E-value=62 Score=26.04 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=32.3
Q ss_pred cEEEE-cCChhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 134 DKQIA-GTTERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 134 kIgII-GlG~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
||-++ |.| |-+.+++. +-++.+++.|+.+. .+..+.++++|+|+++-......+-+++
T Consensus 2 ~Ill~C~~G-aSSs~la~---km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~ 66 (99)
T cd05565 2 NVLVLCAGG-GTSGLLAN---ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKK 66 (99)
T ss_pred EEEEECCCC-CCHHHHHH---HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHH
Confidence 45555 777 77755553 33445556666321 2334567889988888654443333333
No 434
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.17 E-value=43 Score=33.05 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=32.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hc-------HHHHhhCCCeEe--cChHHhhcC-CCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IV-------SKATGTMGAKIT--FDNKEVTLN-SEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~-------~e~l~e~Gv~v~--~d~~eav~~-ADIVILAV 184 (303)
.+++.|+|.|.+|.+ .++.+. .. .+.+.+.|+.+. .+..++... +|+||.+.
T Consensus 5 ~k~v~v~G~g~~G~s-~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYA-AAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHH-HHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 467999999999984 454431 11 123456687654 344455554 89998876
No 435
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=47.07 E-value=49 Score=29.38 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=41.3
Q ss_pred CcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeC--Ccc-H---HHHHHhhccccCC
Q psy6714 133 SDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVK--PHI-V---PVALNDIKPVFNE 202 (303)
Q Consensus 133 mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVp--P~~-v---~~VL~eI~~~L~~ 202 (303)
|||.|| |.|+++. + .+.+++.|+. +..+ .+.+.++|.|||.=. +.. . ..+.+.+...+..
T Consensus 1 ~~~~v~~~~~~~~~~--~-------~~~l~~~G~~~~~~~~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~ 70 (200)
T PRK13143 1 MMIVIIDYGVGNLRS--V-------SKALERAGAEVVITSD-PEEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARS 70 (200)
T ss_pred CeEEEEECCCccHHH--H-------HHHHHHCCCeEEEECC-HHHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 789999 6777644 3 2345556654 3333 344678999999642 111 1 1122334444556
Q ss_pred CCEEEEecCCCcH
Q psy6714 203 SNLLISVAGGVPI 215 (303)
Q Consensus 203 g~IVVSiaaGV~i 215 (303)
++.|+-++.|..+
T Consensus 71 ~~PilgIC~G~q~ 83 (200)
T PRK13143 71 GKPFLGICLGMQL 83 (200)
T ss_pred CCCEEEECHHHHH
Confidence 6777777777643
No 436
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=47.07 E-value=58 Score=31.85 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=32.9
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhh------------------cHHH----HhhCC--CeEecChHHhhcCCCEEEEe
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNI------------------VSKA----TGTMG--AKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r------------------~~e~----l~e~G--v~v~~d~~eav~~ADIVILA 183 (303)
+...||+|||=+ ++.. +++..+.+ ..+. ++..| +.++.|..++++++|||..-
T Consensus 152 l~glkv~~vGD~~~v~~-Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 152 LEDCKVVFVGDATQVCV-SLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCEEEEECCCchHHH-HHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 557899999954 4444 44433211 0111 22345 45678889999999999883
No 437
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.80 E-value=27 Score=33.73 Aligned_cols=30 Identities=40% Similarity=0.481 Sum_probs=21.1
Q ss_pred CCCCCCCcccccCCCcEEEEcCChhhHHHHHHHH
Q psy6714 119 APTTPSSREARWNRSDKQIAGTTERGPGALIASL 152 (303)
Q Consensus 119 ~~~~~~~~~~~~~~mkIgIIGlG~MG~~~La~al 152 (303)
||+-+++.. ..++|.|||.|.-|. +++..+
T Consensus 8 ~~~~~~~~~---~~~dV~IvGaG~aGl-~~A~~L 37 (415)
T PRK07364 8 SPTLPSTRS---LTYDVAIVGGGIVGL-TLAAAL 37 (415)
T ss_pred CCCCCCCCc---cccCEEEECcCHHHH-HHHHHH
Confidence 455555554 356899999999998 566553
No 438
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=46.70 E-value=56 Score=31.92 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=33.8
Q ss_pred cCCCcEEEEcCC--hhhHHHHHHHHhh---------------c-------HHHHhhCC--CeEecChHHhhcCCCEEEEe
Q psy6714 130 WNRSDKQIAGTT--ERGPGALIASLNI---------------V-------SKATGTMG--AKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 130 ~~~mkIgIIGlG--~MG~~~La~al~r---------------~-------~e~l~e~G--v~v~~d~~eav~~ADIVILA 183 (303)
+..+||++||-+ ++.. ++...+.. . .+.+++.| +.++.+..++++++|+|..-
T Consensus 154 l~g~~ia~vGD~~~~v~~-Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGN-SLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHH-HHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 557899999965 3444 44433110 0 01223456 45678889999999999875
Q ss_pred e
Q psy6714 184 V 184 (303)
Q Consensus 184 V 184 (303)
+
T Consensus 233 ~ 233 (336)
T PRK03515 233 V 233 (336)
T ss_pred C
Confidence 4
No 439
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=46.32 E-value=1.2e+02 Score=30.04 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=77.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNL 205 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~I 205 (303)
..|+-.+|.|-.|.. ++. .++.+|+.+. .-+.--+.+.-+||-.+.++.+..|++..+| + .
T Consensus 12 a~kvmLLGSGELGKE-vaI-------e~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekP----d-~ 78 (394)
T COG0027 12 ATKVMLLGSGELGKE-VAI-------EAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKP----D-Y 78 (394)
T ss_pred CeEEEEecCCccchH-HHH-------HHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCC----C-e
Confidence 567999999999993 432 3456677542 1233335677889989999999999988765 3 4
Q ss_pred EEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh--------------hCCc--EEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 206 LISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV--------------RQGA--SVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 206 VVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v--------------~~G~--til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
||.-.-.|..+.|.++=.. ...++||.-+.- .-|. +-+.+.+ ..+.+....+.+|.
T Consensus 79 IVpEiEAI~td~L~elE~~---G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~-----s~~e~~~a~~~iGf 150 (394)
T COG0027 79 IVPEIEAIATDALVELEEE---GYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFAD-----SLEELRAAVEKIGF 150 (394)
T ss_pred eeehhhhhhHHHHHHHHhC---CceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccc-----cHHHHHHHHHHcCC
Confidence 6776667777777664332 345677754310 0122 2333432 34567778888888
Q ss_pred cEEcCC
Q psy6714 270 CEEVPE 275 (303)
Q Consensus 270 ~v~vdE 275 (303)
+..+.+
T Consensus 151 PcvvKP 156 (394)
T COG0027 151 PCVVKP 156 (394)
T ss_pred Ceeccc
Confidence 766543
No 440
>KOG1494|consensus
Probab=45.65 E-value=14 Score=35.74 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH--HH-----h-hCCC----------------eEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK--AT-----G-TMGA----------------KITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e--~l-----~-e~Gv----------------~v~~d~~eav~~ADIVILAV 184 (303)
..|++|+| .|.||.+ |.+.++.... .+ . ..|+ .-....+++++++|+|+|.-
T Consensus 28 ~~KVAvlGAaGGIGQP-LSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA 104 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQP-LSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA 104 (345)
T ss_pred cceEEEEecCCccCcc-HHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence 57999999 7899985 5555443221 01 0 1121 11234577899999999975
No 441
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=45.19 E-value=56 Score=33.35 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~a 151 (303)
.++|||.|+|+|.-|. +++..
T Consensus 5 ~~~~kv~V~GLG~sG~-a~a~~ 25 (448)
T COG0771 5 FQGKKVLVLGLGKSGL-AAARF 25 (448)
T ss_pred ccCCEEEEEecccccH-HHHHH
Confidence 3478999999999998 45543
No 442
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.09 E-value=40 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=37.9
Q ss_pred EEEE--cCChhhHHHHHHHHhhcHHHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHH--HHHH------hhccccCC
Q psy6714 135 KQIA--GTTERGPGALIASLNIVSKATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVP--VALN------DIKPVFNE 202 (303)
Q Consensus 135 IgII--GlG~MG~~~La~al~r~~e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~--~VL~------eI~~~L~~ 202 (303)
|+|| |.|++.. +..+ ++..|+ .+..+.. .+.++|.|||.=.-.... ..++ .|+. ..
T Consensus 2 i~iidyg~gN~~s--~~~a-------l~~~g~~~~~v~~~~-~l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~--~~ 69 (192)
T PRK13142 2 IVIVDYGLGNISN--VKRA-------IEHLGYEVVVSNTSK-IIDQAETIILPGVGHFKDAMSEIKRLNLNAILAK--NT 69 (192)
T ss_pred EEEEEcCCccHHH--HHHH-------HHHcCCCEEEEeCHH-HhccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH--hC
Confidence 7888 8888866 3333 333454 3444544 467899998854312111 1221 1222 24
Q ss_pred CCEEEEecCCCcH
Q psy6714 203 SNLLISVAGGVPI 215 (303)
Q Consensus 203 g~IVVSiaaGV~i 215 (303)
++.|+-++.|..+
T Consensus 70 g~PvlGIClGmQl 82 (192)
T PRK13142 70 DKKMIGICLGMQL 82 (192)
T ss_pred CCeEEEECHHHHH
Confidence 5667888877754
No 443
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=44.84 E-value=17 Score=35.48 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
.|||||.|.|-||. ++.+.
T Consensus 2 ~ikigInG~GRiGr-~v~r~ 20 (334)
T PRK08955 2 TIKVGINGFGRIGR-LALRA 20 (334)
T ss_pred CeEEEEECcCHHHH-HHHHH
Confidence 37999999999999 55543
No 444
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=44.77 E-value=18 Score=31.35 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.0
Q ss_pred CcEEEEcCChhhHHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a 151 (303)
|||||-|+|-||. .+++.
T Consensus 1 ikVgINGfGRIGR-~v~r~ 18 (151)
T PF00044_consen 1 IKVGINGFGRIGR-LVLRA 18 (151)
T ss_dssp EEEEEESTSHHHH-HHHHH
T ss_pred CEEEEECCCcccH-HHHHh
Confidence 5899999999999 56554
No 445
>PRK00536 speE spermidine synthase; Provisional
Probab=44.59 E-value=1.9e+02 Score=27.27 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=54.5
Q ss_pred cCCCEEEEee-CCccHHHHHHhhccccCCCCEEEEecCCCcH----------HHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 175 LNSEVIILAV-KPHIVPVALNDIKPVFNESNLLISVAGGVPI----------KNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 175 ~~ADIVILAV-pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i----------e~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
+.-|+||+=. .+. +..+.++..|+++-++| +.+|... ..|++.++. +.-++..+|.- |.
T Consensus 138 ~~fDVIIvDs~~~~---~fy~~~~~~L~~~Gi~v-~Qs~sp~~~~~~~~~i~~~l~~~F~~---v~~y~~~vp~~---g~ 207 (262)
T PRK00536 138 KKYDLIICLQEPDI---HKIDGLKRMLKEDGVFI-SVAKHPLLEHVSMQNALKNMGDFFSI---AMPFVAPLRIL---SN 207 (262)
T ss_pred CcCCEEEEcCCCCh---HHHHHHHHhcCCCcEEE-ECCCCcccCHHHHHHHHHHHHhhCCc---eEEEEecCCCc---ch
Confidence 4689999873 343 33444555677777766 4444332 233444441 22333333322 22
Q ss_pred EEEEeC-CCCCHHHHHHHHHHHHhcCCcEEcCCCCchhhhhhccchHHHHHHHHHhhhhc
Q psy6714 244 SVFVRG-SSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGPAYRYEVTSNEVIN 302 (303)
Q Consensus 244 til~~g-~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~~ 302 (303)
+.++.+ ...++........ +...+..-+.+++.|.++. ..|.|+-..+++.+.|
T Consensus 208 wgf~~aS~~~~p~~~~~~~~-~~~~~~lryy~~~~h~a~F----~lP~~v~~~l~~~~~~ 262 (262)
T PRK00536 208 KGYIYASFKTHPLKDLMLQK-IEALKSVRYYNEDIHRAAF----ALPKNLQEVFKDNIKS 262 (262)
T ss_pred hhhheecCCCCCccchhhhh-hcccCCceeeCHHHHHHHh----cCcHHHHHHHHHhhcC
Confidence 222222 1111111111122 2222334566776666655 4599998888877654
No 446
>PRK09414 glutamate dehydrogenase; Provisional
Probab=43.13 E-value=2.3e+02 Score=28.90 Aligned_cols=57 Identities=5% Similarity=0.007 Sum_probs=32.8
Q ss_pred CCCEEEEeeCCccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcH
Q psy6714 176 NSEVIILAVKPHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 176 ~ADIVILAVpP~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p 236 (303)
+|||+|-|-....+. +....+.+ ..-++|+--+++-....-.+.|.. +-|.++|..-
T Consensus 311 d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~--rGI~~vPD~l 368 (445)
T PRK09414 311 PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLE--AGVLFAPGKA 368 (445)
T ss_pred CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHH--CCcEEECchh
Confidence 799999998755554 33444431 123577776665544444444432 3466667654
No 447
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.10 E-value=74 Score=30.56 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=33.5
Q ss_pred cCCCcEEEEcCC---hhhHHHHHHHHhh------------------cHHHHhhCCCe--EecChHHhhcCCCEEEE
Q psy6714 130 WNRSDKQIAGTT---ERGPGALIASLNI------------------VSKATGTMGAK--ITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 130 ~~~mkIgIIGlG---~MG~~~La~al~r------------------~~e~l~e~Gv~--v~~d~~eav~~ADIVIL 182 (303)
....||+|+|=| ++.. ++...+.+ ..+.+++.|.. ++.|..++++++|||..
T Consensus 148 l~g~~va~vGD~~~~~v~~-Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVH-SLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCEEEEEccCCCCcHHH-HHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 456899999975 5665 44433211 01223345654 57888999999998876
No 448
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=42.89 E-value=69 Score=30.16 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=33.7
Q ss_pred ChHHh-hcCCCEEEEeeCCccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcH
Q psy6714 169 DNKEV-TLNSEVIILAVKPHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 169 d~~ea-v~~ADIVILAVpP~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p 236 (303)
++.++ ..+|||++.|=--..+. +.+..|.+ ..-++|+.-+++-....-.+.|.. +-|.++|..-
T Consensus 113 ~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~--rGI~vvPD~l 178 (254)
T cd05313 113 EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQ--AGVLFAPGKA 178 (254)
T ss_pred CCcchhcCCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHH--CCcEEECchh
Confidence 34443 34799999995433332 23334421 123577777765544444445532 3466667653
No 449
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=42.43 E-value=74 Score=31.06 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=18.0
Q ss_pred hCCC--eEecChHHhhcCCCEEEEe
Q psy6714 161 TMGA--KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 161 e~Gv--~v~~d~~eav~~ADIVILA 183 (303)
..|. .++.|..++++++|||..=
T Consensus 207 ~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 207 ETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred HcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3564 4678888999999999884
No 450
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=42.32 E-value=42 Score=31.49 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=41.7
Q ss_pred CCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeC-CccHHHH------HHhhccccC
Q psy6714 132 RSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVK-PHIVPVA------LNDIKPVFN 201 (303)
Q Consensus 132 ~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVp-P~~v~~V------L~eI~~~L~ 201 (303)
||||||+.+. ..-. . ...++..|+. ...++ +.+.++|.|||.=- +..+..+ .+.|+....
T Consensus 1 ~m~igVLa~qG~~~e--~-------~~aL~~lG~ev~~v~~~-~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~ 70 (248)
T PLN02832 1 MMAIGVLALQGSFNE--H-------IAALRRLGVEAVEVRKP-EQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVK 70 (248)
T ss_pred CcEEEEEeCCCchHH--H-------HHHHHHCCCcEEEeCCH-HHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHH
Confidence 6899999864 3332 1 2334455654 33444 55678999999762 2222222 122333334
Q ss_pred CCCEEEEecCCCcH
Q psy6714 202 ESNLLISVAGGVPI 215 (303)
Q Consensus 202 ~g~IVVSiaaGV~i 215 (303)
.+..|+-+++|.-+
T Consensus 71 ~g~PvLGiC~Gmql 84 (248)
T PLN02832 71 SGKPVWGTCAGLIF 84 (248)
T ss_pred cCCCEEEEChhHHH
Confidence 56667777777754
No 451
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.22 E-value=83 Score=27.70 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred EEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHH--------HHHHhhccccCC
Q psy6714 135 KQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVP--------VALNDIKPVFNE 202 (303)
Q Consensus 135 IgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~--------~VL~eI~~~L~~ 202 (303)
|.|| |.|+... ++. .++..|+. +..+.. .+.++|.||+.=+...-. .+...|+..+..
T Consensus 2 i~vid~g~gn~~~--~~~-------~l~~~g~~v~~~~~~~-~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~ 71 (199)
T PRK13181 2 IAIIDYGAGNLRS--VAN-------ALKRLGVEAVVSSDPE-EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK 71 (199)
T ss_pred EEEEeCCCChHHH--HHH-------HHHHCCCcEEEEcChH-HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC
Confidence 7888 7777755 332 34455654 334444 457899999855332111 112334444445
Q ss_pred CCEEEEecCCCc
Q psy6714 203 SNLLISVAGGVP 214 (303)
Q Consensus 203 g~IVVSiaaGV~ 214 (303)
+..|+-++.|..
T Consensus 72 ~~PvlGiC~G~Q 83 (199)
T PRK13181 72 KQPVLGICLGMQ 83 (199)
T ss_pred CCCEEEECHhHH
Confidence 667787877754
No 452
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.44 E-value=59 Score=32.80 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc--------------H---HHHhhCCCeEe-cChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV--------------S---KATGTMGAKIT-FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~--------------~---e~l~e~Gv~v~-~d~~eav~~ADIVILAV 184 (303)
.++||+|+|+|.-|. +.++.+.+. . ..+.+.+..+. ....+.+.++|+||++-
T Consensus 7 ~~~~v~v~G~G~sG~-~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGR-AAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhH-HHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 356899999999998 344443210 0 12333222222 23345567899999876
No 453
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=40.87 E-value=58 Score=26.88 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q psy6714 251 SASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 251 ~~~~e~~e~V~~Lfs~iG~ 269 (303)
.........++.+|..+|.
T Consensus 119 ~g~~~~~~~l~~~~~~~~~ 137 (152)
T PF03358_consen 119 RGGLRALEQLRQILDYLGM 137 (152)
T ss_dssp STTHHHHHHHHHHHHHTTB
T ss_pred cHHHHHHHHHHHHHHHCCC
Confidence 3445566677777777765
No 454
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.25 E-value=80 Score=31.56 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChhhHHHHHHH-HhhcHHHHhhCCCeEecChHHhhcCCCEEEE---eeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIAS-LNIVSKATGTMGAKITFDNKEVTLNSEVIIL---AVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a-l~r~~e~l~e~Gv~v~~d~~eav~~ADIVIL---AVpP~~v~~VL 193 (303)
+|||+.|+-+| +. +-.. .......+.+.|...+.+ .++||+||+ +|.-.+-.+++
T Consensus 2 ~~~~~~i~t~G---C~-~N~~ds~~~~~~l~~~g~~~~~~----~~~aDvviinTC~v~~~a~~~~~ 60 (444)
T PRK14325 2 MMKKLYIKTYG---CQ-MNEYDSSKMADLLGAEGYELTDD----PEEADLILLNTCSIREKAQEKVF 60 (444)
T ss_pred CCcEEEEEEcC---CC-CcHHHHHHHHHHHHHCcCEECCC----cCCCCEEEEEcceeeehHHHHHH
Confidence 46789999776 21 1000 012234566788887655 346899999 55555554443
No 455
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=40.20 E-value=42 Score=35.09 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL 152 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al 152 (303)
|.++||||||.|..|. |++...
T Consensus 20 ~~~k~IgIIGgGqlg~-mla~aA 41 (577)
T PLN02948 20 VSETVVGVLGGGQLGR-MLCQAA 41 (577)
T ss_pred CCCCEEEEECCCHHHH-HHHHHH
Confidence 5678999999999999 777653
No 456
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=39.91 E-value=3.1e+02 Score=25.95 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=33.1
Q ss_pred cChHHhhc--CCCEEEEeeC-C-ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 168 FDNKEVTL--NSEVIILAVK-P-HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 168 ~d~~eav~--~ADIVILAVp-P-~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+..|+++ ++|++|=... + -.-+++++.+..+. +..||..++++.+.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~~ 146 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTSK 146 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCCc
Confidence 57788888 8997664332 3 34568888887654 66788888888863
No 457
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.80 E-value=1.7e+02 Score=23.40 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=22.0
Q ss_pred hcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 174 TLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 174 v~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
+.+-|++|+.-..-.-.++++.+...-..+..+|++.+.
T Consensus 41 ~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 41 VDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445677777777666666654433222345556666643
No 458
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=39.60 E-value=23 Score=34.64 Aligned_cols=20 Identities=5% Similarity=-0.157 Sum_probs=15.5
Q ss_pred CCCEEEEeeCCccHHHHHHh
Q psy6714 176 NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~e 195 (303)
++|+||.|+.....++.+..
T Consensus 91 gvDiVle~tG~~~s~~~a~~ 110 (336)
T PRK13535 91 GVDVVLDCTGVYGSREDGEA 110 (336)
T ss_pred CCCEEEEccchhhhHHHHHH
Confidence 79999999987766666544
No 459
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=39.46 E-value=62 Score=28.13 Aligned_cols=73 Identities=8% Similarity=0.159 Sum_probs=36.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH---HH-----hhC-------CCeEecChHHhhc-CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK---AT-----GTM-------GAKITFDNKEVTL-NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e---~l-----~e~-------Gv~v~~d~~eav~-~ADIVILAVpP~~v~~VL~e 195 (303)
..+|++.|.|.-|. +|...+....+ .+ .+. ++.+ .+++++.+ ..|+||+ +.+....+++++
T Consensus 68 gk~I~~yGA~~kg~-tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI-~~p~~l~~~~pd~viv-law~y~~EI~~~ 144 (160)
T PF08484_consen 68 GKRIAGYGAGAKGN-TLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPI-VSPEELKERKPDYVIV-LAWNYKDEIIEK 144 (160)
T ss_dssp T--EEEE---SHHH-HHHHHHT--TTTS--EEES-GGGTTEE-TTT--EE-EEGGG--SS--SEEEE-S-GGGHHHHHHH
T ss_pred CCEEEEECcchHHH-HHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeE-CCHHHHhhCCCCEEEE-cChhhHHHHHHH
Confidence 56799999999999 66665443221 11 122 2333 34555444 4798877 678888899888
Q ss_pred hccccCC-CCEEE
Q psy6714 196 IKPVFNE-SNLLI 207 (303)
Q Consensus 196 I~~~L~~-g~IVV 207 (303)
+..++.. +++|+
T Consensus 145 ~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 145 LREYLERGGKFIV 157 (160)
T ss_dssp THHHHHTT-EEEE
T ss_pred HHHHHhcCCEEEE
Confidence 8766544 44444
No 460
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=39.41 E-value=22 Score=34.85 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.2
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
++||||+|+|.||. ..++.
T Consensus 5 ~lrVaI~G~GrIGr-~~~r~ 23 (338)
T PLN02358 5 KIRIGINGFGRIGR-LVARV 23 (338)
T ss_pred ceEEEEEeecHHHH-HHHHH
Confidence 47999999999999 44443
No 461
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=38.93 E-value=1.5e+02 Score=30.38 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=14.9
Q ss_pred cCCCcEEEEcC-ChhhHHHH
Q psy6714 130 WNRSDKQIAGT-TERGPGAL 148 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~L 148 (303)
...+||+|+|. |.||...|
T Consensus 55 ~~~KkI~ILGSTGSIGtqtL 74 (454)
T PLN02696 55 DGPKPISLLGSTGSIGTQTL 74 (454)
T ss_pred CCccEEEEecCCcHhhHHHH
Confidence 34578999996 99999544
No 462
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=37.95 E-value=1.7e+02 Score=27.28 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=43.1
Q ss_pred CCcEEEEcCChhhHHHHHH-HHhhcHHHHhhCCCe--Ee-----cChH-------Hhh--cCCCEEEEeeC------Ccc
Q psy6714 132 RSDKQIAGTTERGPGALIA-SLNIVSKATGTMGAK--IT-----FDNK-------EVT--LNSEVIILAVK------PHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~-al~r~~e~l~e~Gv~--v~-----~d~~-------eav--~~ADIVILAVp------P~~ 188 (303)
.-|||||-+|++|...+.. .++.. +...++. +. .+++ +.+ .+.|+||.--| |..
T Consensus 2 vvkig~ik~GniGts~v~dlllDEr---AdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~k 78 (277)
T COG1927 2 VVKIGFIKCGNIGTSPVVDLLLDER---ADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKK 78 (277)
T ss_pred eeEEEEEEecccchHHHHHHHHHhh---cccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchH
Confidence 3489999999999943321 22222 2122221 11 1222 112 25788887664 344
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHH-HHHh
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIK-NMEQ 220 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie-~L~~ 220 (303)
.++++.+- .--.+||+..-|.... .|++
T Consensus 79 ARE~l~~s----~~PaiiigDaPg~~vkdelee 107 (277)
T COG1927 79 AREILSDS----DVPAIIIGDAPGLKVKDELEE 107 (277)
T ss_pred HHHHHhhc----CCCEEEecCCccchhHHHHHh
Confidence 45555431 1235788888877763 4544
No 463
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=37.59 E-value=96 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.1
Q ss_pred hCCC--eEecChHHhhcCCCEEEEe
Q psy6714 161 TMGA--KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 161 e~Gv--~v~~d~~eav~~ADIVILA 183 (303)
+.|. .+.+|+.++++++|+|..-
T Consensus 208 ~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 208 ESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred HcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3564 4678889999999999874
No 464
>PRK06756 flavodoxin; Provisional
Probab=37.48 E-value=2.4e+02 Score=23.33 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=33.0
Q ss_pred CCcEEEE-c--CChhhHHHHHHHHhhcHHHHhhCCCeEe-----cC-hHHhhcCCCEEEEeeCCc-------cHHHHHHh
Q psy6714 132 RSDKQIA-G--TTERGPGALIASLNIVSKATGTMGAKIT-----FD-NKEVTLNSEVIILAVKPH-------IVPVALND 195 (303)
Q Consensus 132 ~mkIgII-G--lG~MG~~~La~al~r~~e~l~e~Gv~v~-----~d-~~eav~~ADIVILAVpP~-------~v~~VL~e 195 (303)
||||.|| + .|+--. ++.. ..+.+.+.|+.+. .. ....+.++|.|+|++|.. .+.+++.+
T Consensus 1 mmkv~IiY~S~tGnTe~--vA~~---ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~ 75 (148)
T PRK06756 1 MSKLVMIFASMSGNTEE--MADH---IAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDA 75 (148)
T ss_pred CceEEEEEECCCchHHH--HHHH---HHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHH
Confidence 5788888 4 443222 3322 2233445565421 11 123467899999998754 25555665
Q ss_pred hc
Q psy6714 196 IK 197 (303)
Q Consensus 196 I~ 197 (303)
+.
T Consensus 76 l~ 77 (148)
T PRK06756 76 MD 77 (148)
T ss_pred Hh
Confidence 54
No 465
>PLN00135 malate dehydrogenase
Probab=37.41 E-value=71 Score=30.80 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCeEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+.+..+..+.+++|||||++-- |.. +.++.++|..+..++.+||-+.+++++-
T Consensus 45 ~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~ 114 (309)
T PLN00135 45 GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114 (309)
T ss_pred CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHH
Confidence 44444554677899999999872 221 3455566666434666777677888764
No 466
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=37.12 E-value=93 Score=29.40 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=36.7
Q ss_pred cChHHhhcCC--CEEEEee--CCccHHHHHHhhccccCCCCEEEEecCCCcH-----HHHHhhCC
Q psy6714 168 FDNKEVTLNS--EVIILAV--KPHIVPVALNDIKPVFNESNLLISVAGGVPI-----KNMEQALP 223 (303)
Q Consensus 168 ~d~~eav~~A--DIVILAV--pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-----e~L~~~l~ 223 (303)
.+..|+++.+ |++|=+. +--.-+++++.+..+. +..||..++++.+. +...++-.
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHHTTT
T ss_pred cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHhhCC
Confidence 5788889887 9776553 4555678888887654 56688888888873 45555543
No 467
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=37.10 E-value=86 Score=27.50 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=38.3
Q ss_pred EEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHH--------HHHHhhccccCC
Q psy6714 135 KQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVP--------VALNDIKPVFNE 202 (303)
Q Consensus 135 IgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~--------~VL~eI~~~L~~ 202 (303)
|+|| |.|+++. +. +.+++.|+. +..+ .+.+++.|.|||+=+...-. ...+.++.....
T Consensus 1 i~i~d~g~~~~~~--~~-------~~l~~~g~~v~v~~~-~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~ 70 (198)
T cd01748 1 IAIIDYGMGNLRS--VA-------NALERLGAEVIITSD-PEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIAS 70 (198)
T ss_pred CEEEeCCCChHHH--HH-------HHHHHCCCeEEEEcC-hHHhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHC
Confidence 4566 7777776 32 345556654 3333 33467899999965422111 122334444445
Q ss_pred CCEEEEecCCCc
Q psy6714 203 SNLLISVAGGVP 214 (303)
Q Consensus 203 g~IVVSiaaGV~ 214 (303)
+..|+-++.|..
T Consensus 71 ~~pilGiC~G~q 82 (198)
T cd01748 71 GKPFLGICLGMQ 82 (198)
T ss_pred CCcEEEECHHHH
Confidence 666777776653
No 468
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=36.75 E-value=37 Score=30.91 Aligned_cols=100 Identities=15% Similarity=0.199 Sum_probs=52.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh-----------cH----------HH---HhhC-CCeEe-----cChHHhh-cCCC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI-----------VS----------KA---TGTM-GAKIT-----FDNKEVT-LNSE 178 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r-----------~~----------e~---l~e~-Gv~v~-----~d~~eav-~~AD 178 (303)
+..++|.|.|+|++|.. ++..+.+ .. +. .++. ++... .+..++. .+||
T Consensus 21 l~g~~vaIqGfGnVG~~-~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 21 LEGLTVAVQGLGNVGWG-LAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 35689999999999994 5544211 11 11 1122 12111 1222322 3799
Q ss_pred EEEEeeCCccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH
Q psy6714 179 VIILAVKPHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA 237 (303)
Q Consensus 179 IVILAVpP~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~ 237 (303)
|+|.|.....+. +...++. -++|+.-+++-....-.+.|.. +.+.+.|..-+
T Consensus 100 VlipaA~~~~i~~~~a~~l~-----a~~V~e~AN~p~t~~a~~~L~~--~Gi~v~Pd~~~ 152 (217)
T cd05211 100 IFAPCALGNVIDLENAKKLK-----AKVVAEGANNPTTDEALRILHE--RGIVVAPDIVA 152 (217)
T ss_pred EEeeccccCccChhhHhhcC-----ccEEEeCCCCCCCHHHHHHHHH--CCcEEEChHHh
Confidence 999998766543 2223332 3567766654433344444532 34667776543
No 469
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=36.61 E-value=1e+02 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=33.1
Q ss_pred ccCCCcEEEEcC-ChhhHHHHHHHHhhc------------------HHH----HhhCCC--eEecChHHhhcCCCEEEEe
Q psy6714 129 RWNRSDKQIAGT-TERGPGALIASLNIV------------------SKA----TGTMGA--KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 129 ~~~~mkIgIIGl-G~MG~~~La~al~r~------------------~e~----l~e~Gv--~v~~d~~eav~~ADIVILA 183 (303)
.+...||+++|- +.+-. +++..+.+. .+. ..+.|. .+..|..++++++|+|..-
T Consensus 145 ~l~g~~v~~vGd~~~v~~-Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCN-SLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCCcEEEEEeCCCchHH-HHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 356789999984 44444 444332110 111 234564 4567888999999999873
No 470
>PRK06988 putative formyltransferase; Provisional
Probab=36.37 E-value=1.9e+02 Score=27.76 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=15.6
Q ss_pred CCCcEEEEcCChhhHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALI 149 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La 149 (303)
|||||.|+|.+.+|...|-
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~ 19 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQ 19 (312)
T ss_pred CCcEEEEEeCcHHHHHHHH
Confidence 4689999999999985443
No 471
>KOG0022|consensus
Probab=36.23 E-value=1.1e+02 Score=30.43 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-----------hhcH---HHHhhCCCeEecChH-------Hhh-----cCCCEEEEee-C
Q psy6714 133 SDKQIAGTTERGPGALIASL-----------NIVS---KATGTMGAKITFDNK-------EVT-----LNSEVIILAV-K 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-----------~r~~---e~l~e~Gv~v~~d~~-------eav-----~~ADIVILAV-p 185 (303)
..++|.|||.+|- +.+... +.+. ++.+++|++-.-++. |++ ...|+-|=|+ .
T Consensus 194 stvAVfGLG~VGL-av~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~ 272 (375)
T KOG0022|consen 194 STVAVFGLGGVGL-AVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGN 272 (375)
T ss_pred CEEEEEecchHHH-HHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCC
Confidence 5799999999998 343321 1122 345688887554443 222 1467777777 4
Q ss_pred CccHHHHHHhhc
Q psy6714 186 PHIVPVALNDIK 197 (303)
Q Consensus 186 P~~v~~VL~eI~ 197 (303)
++.+.+.+....
T Consensus 273 ~~~m~~al~s~h 284 (375)
T KOG0022|consen 273 VSTMRAALESCH 284 (375)
T ss_pred HHHHHHHHHHhh
Confidence 666666665544
No 472
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=36.18 E-value=99 Score=30.23 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.4
Q ss_pred hCC--CeEecChHHhhcCCCEEEEee
Q psy6714 161 TMG--AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 161 e~G--v~v~~d~~eav~~ADIVILAV 184 (303)
..| +.++.|..++++++|||..-+
T Consensus 208 ~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 208 KHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred HcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 346 455788889999999988754
No 473
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.07 E-value=1.3e+02 Score=26.55 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=38.9
Q ss_pred EEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHH---H------Hhhccc-c
Q psy6714 135 KQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVA---L------NDIKPV-F 200 (303)
Q Consensus 135 IgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~V---L------~eI~~~-L 200 (303)
|+|| |.|+++. +... ++..|+. +..+..+ +.++|.|||.=+ ....+. + ..|... +
T Consensus 2 i~iid~g~~n~~~--v~~~-------l~~~g~~~~~~~~~~~-l~~~d~lilPG~-g~~~~~~~~l~~~~~~~~l~~~~~ 70 (201)
T PRK13152 2 IALIDYKAGNLNS--VAKA-------FEKIGAINFIAKNPKD-LQKADKLLLPGV-GSFKEAMKNLKELGFIEALKEQVL 70 (201)
T ss_pred EEEEECCCCcHHH--HHHH-------HHHCCCeEEEECCHHH-HcCCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHH
Confidence 8888 8888887 3333 2334543 3444444 577999999433 222221 1 223332 3
Q ss_pred CCCCEEEEecCCCcH
Q psy6714 201 NESNLLISVAGGVPI 215 (303)
Q Consensus 201 ~~g~IVVSiaaGV~i 215 (303)
..+.-|+-++.|.-+
T Consensus 71 ~~~~pvlGiC~G~Q~ 85 (201)
T PRK13152 71 VQKKPILGICLGMQL 85 (201)
T ss_pred hCCCcEEEECHhHHH
Confidence 456667777777643
No 474
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=35.88 E-value=72 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.228 Sum_probs=11.6
Q ss_pred CcEEEEcCChhhH
Q psy6714 133 SDKQIAGTTERGP 145 (303)
Q Consensus 133 mkIgIIGlG~MG~ 145 (303)
.++.|+|+|.+|.
T Consensus 146 ~~vlV~G~G~vG~ 158 (308)
T TIGR01202 146 LPDLIVGHGTLGR 158 (308)
T ss_pred CcEEEECCCHHHH
Confidence 4699999999998
No 475
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.56 E-value=1e+02 Score=25.19 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=32.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVpP~~v 189 (303)
|+||.++=.+.|-+++|+.- -.+.++..|..+ ..+..+.+.+.|+|+|+-.....
T Consensus 1 Mk~IlLvC~aGmSTSlLV~K---m~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~ 61 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTK---MKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRYM 61 (102)
T ss_pred CceEEEEecCCCcHHHHHHH---HHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHHH
Confidence 57888886666777455533 233344455432 13445677899999998533333
No 476
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=35.50 E-value=40 Score=32.57 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred CCCCcccccCCCcEEEEcCChhhHHHHHHH
Q psy6714 122 TPSSREARWNRSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 122 ~~~~~~~~~~~mkIgIIGlG~MG~~~La~a 151 (303)
|++.+ +.|||+|||.|..|. +++.+
T Consensus 6 ~~~~~----~~~~ilIiG~g~~~~-~~~~a 30 (395)
T PRK09288 6 TPLSP----SATRVMLLGSGELGK-EVAIE 30 (395)
T ss_pred CCCCC----CCCEEEEECCCHHHH-HHHHH
Confidence 45555 368999999999888 56654
No 477
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=35.25 E-value=45 Score=34.22 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=16.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~ 153 (303)
+..|.|||.|.||. +++..+.
T Consensus 45 ~~DVvIIGGGI~G~-a~A~~La 65 (497)
T PTZ00383 45 VYDVVIVGGGVTGT-ALFYTLS 65 (497)
T ss_pred cccEEEECccHHHH-HHHHHHH
Confidence 45899999999999 5665543
No 478
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=35.25 E-value=88 Score=32.92 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=12.8
Q ss_pred CCcEEEEcCChhhH
Q psy6714 132 RSDKQIAGTTERGP 145 (303)
Q Consensus 132 ~mkIgIIGlG~MG~ 145 (303)
.+||.|||.|..|-
T Consensus 310 ~kkVaIIG~GpaGl 323 (639)
T PRK12809 310 SEKVAVIGAGPAGL 323 (639)
T ss_pred CCEEEEECcCHHHH
Confidence 57899999999997
No 479
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=34.97 E-value=1.9e+02 Score=26.11 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHH
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNME 219 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~ 219 (303)
..|.||+.=- ..+.++++....+++++--|| ++.++++.+.
T Consensus 102 ~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV--~naitlE~~~ 142 (187)
T COG2242 102 SPDAIFIGGG-GNIEEILEAAWERLKPGGRLV--ANAITLETLA 142 (187)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHcCcCCeEE--EEeecHHHHH
Confidence 5899999977 889999988877777654443 2335555443
No 480
>PLN02342 ornithine carbamoyltransferase
Probab=34.93 E-value=1.1e+02 Score=30.22 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=33.9
Q ss_pred ccCCCcEEEEcCC-hhhHHHHHHHHhh------------------cHHHHhhCC---CeEecChHHhhcCCCEEEEee
Q psy6714 129 RWNRSDKQIAGTT-ERGPGALIASLNI------------------VSKATGTMG---AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 129 ~~~~mkIgIIGlG-~MG~~~La~al~r------------------~~e~l~e~G---v~v~~d~~eav~~ADIVILAV 184 (303)
.+...||+|||=+ ++-. +++..+.. ..+.+++.| +.+++|+.++++++|||..-+
T Consensus 191 ~l~glkva~vGD~~nva~-Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVH-SWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred CcCCCEEEEECCCchhHH-HHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 4567899999964 3333 44433211 111233344 456788899999999998764
No 481
>KOG1370|consensus
Probab=34.88 E-value=1e+02 Score=30.43 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=40.6
Q ss_pred cEEEE-cCChhhHHHHHHHHhhc----------H-HHH--hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 134 DKQIA-GTTERGPGALIASLNIV----------S-KAT--GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 134 kIgII-GlG~MG~~~La~al~r~----------~-e~l--~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
|+.+| |.|.+|.+ -+.+++-. + ..+ .-.|+.+ .+.+|++++.||++.++--.++. ..+....
T Consensus 215 Kv~Vv~GYGdVGKg-CaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc~dii--~~~H~~~ 290 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKG-CAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGCKDII--TGEHFDQ 290 (434)
T ss_pred cEEEEeccCccchh-HHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCCcchh--hHHHHHh
Confidence 66666 99999975 23332211 1 112 2347766 56788999999999998544332 1222223
Q ss_pred cCCCCEEE
Q psy6714 200 FNESNLLI 207 (303)
Q Consensus 200 L~~g~IVV 207 (303)
++.+.||.
T Consensus 291 mk~d~IvC 298 (434)
T KOG1370|consen 291 MKNDAIVC 298 (434)
T ss_pred CcCCcEEe
Confidence 44565544
No 482
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=34.85 E-value=62 Score=33.08 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=36.2
Q ss_pred eEecChHHhhcCCCEEEEeeCCccHHHH-HHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHIVPVA-LNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~v~~V-L~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
..+.+..++++++|+||+++....+.++ .+.+...+....+|+..-+-++.+.+++
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~ 457 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLRE 457 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHh
Confidence 4455667889999999999987766643 2344333433447787665555555543
No 483
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=34.85 E-value=29 Score=34.05 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.7
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
|+||||-|.|-||. ++.+.
T Consensus 1 ~~ki~INGfGRIGR-~~~R~ 19 (337)
T PRK07403 1 MIRVAINGFGRIGR-NFLRC 19 (337)
T ss_pred CeEEEEEccChHHH-HHHHH
Confidence 67999999999999 55543
No 484
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=34.58 E-value=1.1e+02 Score=29.38 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=32.7
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhh------------cH--------HHHhhCC-CeEecChHHhhcCCCEEEEe
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNI------------VS--------KATGTMG-AKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r------------~~--------e~l~e~G-v~v~~d~~eav~~ADIVILA 183 (303)
+...||++||- +++.. ++...+.. .. +.+++.| +.+..|..++++++|+|..=
T Consensus 151 l~g~~va~vGd~~rv~~-Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVN-SLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCEEEEECCCCcHHH-HHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 45689999996 45554 44433211 00 1122334 56678889999999999883
No 485
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=34.56 E-value=2.4e+02 Score=26.01 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=10.5
Q ss_pred cCCCcEEEEcCCh
Q psy6714 130 WNRSDKQIAGTTE 142 (303)
Q Consensus 130 ~~~mkIgIIGlG~ 142 (303)
|.|.+|.|||+|.
T Consensus 5 ~~~~~l~iVG~Gp 17 (257)
T PRK15473 5 FDPRCVWFVGAGP 17 (257)
T ss_pred CCCCEEEEEEeCC
Confidence 3467899999987
No 486
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=33.86 E-value=1e+02 Score=28.13 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=11.9
Q ss_pred CCcEEEEcCChhhH
Q psy6714 132 RSDKQIAGTTERGP 145 (303)
Q Consensus 132 ~mkIgIIGlG~MG~ 145 (303)
..++.|+|.|.+|.
T Consensus 121 g~~VlV~G~G~vG~ 134 (280)
T TIGR03366 121 GRRVLVVGAGMLGL 134 (280)
T ss_pred CCEEEEECCCHHHH
Confidence 34799999999998
No 487
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.84 E-value=1e+02 Score=32.41 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.7
Q ss_pred CCcEEEEcCChhhH
Q psy6714 132 RSDKQIAGTTERGP 145 (303)
Q Consensus 132 ~mkIgIIGlG~MG~ 145 (303)
.++|.|||.|..|-
T Consensus 327 ~~~VaIIGaGpAGL 340 (654)
T PRK12769 327 DKRVAIIGAGPAGL 340 (654)
T ss_pred CCEEEEECCCHHHH
Confidence 57899999999997
No 488
>PLN02527 aspartate carbamoyltransferase
Probab=33.74 E-value=1.3e+02 Score=28.94 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=33.1
Q ss_pred cCCCcEEEEcCC-h--hhHHHHHHHHhhc-------------------HHHHhhCCC--eEecChHHhhcCCCEEEE
Q psy6714 130 WNRSDKQIAGTT-E--RGPGALIASLNIV-------------------SKATGTMGA--KITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 130 ~~~mkIgIIGlG-~--MG~~~La~al~r~-------------------~e~l~e~Gv--~v~~d~~eav~~ADIVIL 182 (303)
+...||+|||-+ + +.. +++..+... .+.+.+.|. .++.|+.++++++|||..
T Consensus 149 l~g~kva~vGD~~~~rv~~-Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt 224 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVR-SLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQ 224 (306)
T ss_pred cCCCEEEEECCCCCChhHH-HHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEE
Confidence 456899999976 3 444 454432111 112234455 456888999999999888
No 489
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=33.65 E-value=55 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=18.1
Q ss_pred cCCCEEEEeeCCcc----HHHHHHhhc--cccCCCCEEE
Q psy6714 175 LNSEVIILAVKPHI----VPVALNDIK--PVFNESNLLI 207 (303)
Q Consensus 175 ~~ADIVILAVpP~~----v~~VL~eI~--~~L~~g~IVV 207 (303)
...|+||+- ||+. +.+++..+. +.++++.+||
T Consensus 113 ~~fDiIflD-PPY~~~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 113 EKFDIIFLD-PPYAKGLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp S-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCceEEEEC-CCcccchHHHHHHHHHHHCCCCCCCEEEE
Confidence 467999888 5444 255666664 4566666555
No 490
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=33.63 E-value=35 Score=34.25 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.4
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
.+||||.|.|.||. .+.+.
T Consensus 60 ~~kVaInGfGrIGR-~vlr~ 78 (395)
T PLN03096 60 KIKVAINGFGRIGR-NFLRC 78 (395)
T ss_pred ccEEEEECcCHHHH-HHHHH
Confidence 37999999999999 45544
No 491
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=33.18 E-value=73 Score=26.75 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEe--cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCCCCEEEE
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT--FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~--~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVS 208 (303)
..+|||+|--.++. .|... .........+.+. .+..+ +.+||+++++-. +..+.+++..+.. .+.+.||
T Consensus 27 ~~~icv~g~~~~~~-~L~~l---~~~~~~~~~i~v~~~~~~~~-~~~C~ilyi~~~~~~~~~~i~~~~~~---~~vLtIs 98 (145)
T PF13689_consen 27 PFRICVLGDDPFAE-ALSTL---AGKQVGGRPIRVRRLSSPNE-ISGCHILYISSSESSQLPEILRKLPG---KPVLTIS 98 (145)
T ss_pred CeEEEEECChHHHH-HHHHh---hhcccCCCcEEEEECCCCcc-cccccEEEECCCChHHHHHHHHhcCC---CceEEEE
Confidence 56799999877776 33311 1112223334332 33333 689999999985 4455566655432 3455565
Q ss_pred ecCC
Q psy6714 209 VAGG 212 (303)
Q Consensus 209 iaaG 212 (303)
...+
T Consensus 99 d~~~ 102 (145)
T PF13689_consen 99 DGEG 102 (145)
T ss_pred CCCC
Confidence 5443
No 492
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=33.12 E-value=98 Score=24.65 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHhhCCCeEecChHHhhcCCCEEEEee---CCccHHHHHHhhcccc--C-CCC-EEE-EecCCCcHHHHHhhCC
Q psy6714 157 KATGTMGAKITFDNKEVTLNSEVIILAV---KPHIVPVALNDIKPVF--N-ESN-LLI-SVAGGVPIKNMEQALP 223 (303)
Q Consensus 157 e~l~e~Gv~v~~d~~eav~~ADIVILAV---pP~~v~~VL~eI~~~L--~-~g~-IVV-SiaaGV~ie~L~~~l~ 223 (303)
..+.+.|+..+.++ ++||+|||=+ ....-.+++..|.... + ++. +|| -+++....+.|.+..|
T Consensus 21 ~~l~~~G~~~~~~~----e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~~p 91 (98)
T PF00919_consen 21 SILQAAGYEIVDDP----EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKEFP 91 (98)
T ss_pred HHHHhcCCeeeccc----ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHhhCC
Confidence 45678899876664 5789999844 5666666665544332 1 333 444 3566666777877766
No 493
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=33.05 E-value=1.2e+02 Score=29.76 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=33.6
Q ss_pred ccCCCcEEEEcCC---hhhHHHHHHHHh-------------------hcHHHHhhCC--CeEecChHHhhcCCCEEEEe
Q psy6714 129 RWNRSDKQIAGTT---ERGPGALIASLN-------------------IVSKATGTMG--AKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 129 ~~~~mkIgIIGlG---~MG~~~La~al~-------------------r~~e~l~e~G--v~v~~d~~eav~~ADIVILA 183 (303)
.+...||++||-| ++.. ++...+. ...+.+.+.| +.+++|+.++++++|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~-Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVH-SLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHH-HHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 3557899999975 5554 4443211 0011233445 45678889999999998873
No 494
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=32.43 E-value=1.4e+02 Score=29.23 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCCEEE--------EecCCCcHHHHHh---hCCCCCceEEEecCcHHhhhCCcE
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLI--------SVAGGVPIKNMEQ---ALPKNSRIIRAMPNTPALVRQGAS 244 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVV--------SiaaGV~ie~L~~---~l~~~~~VVr~mPn~p~~v~~G~t 244 (303)
++|+|++| -.+.+.+.. ..|++++.|+ |+..+++.+.+.+ ..| +..+|.++ |+.+++..-.-
T Consensus 69 ~Ad~IVf~-GV~FMaETA----kiLnPeK~VL~Pd~~AgCsmA~~~~~~~~~~~~~~~P-~~~vV~Yv-NtsA~vKA~~D 141 (324)
T COG0379 69 DADTIVFA-GVHFMAETA----KILNPEKTVLLPDLEAGCSMADMITAEEVRAFKEKHP-DAPVVTYV-NTSAEVKAEAD 141 (324)
T ss_pred CCCEEEEe-ceeehHhhH----hhcCCCCeEecCCCCCCCCcccCCCHHHHHHHHHHCC-CCceEEEe-eChHHHHhhcC
Confidence 68999888 333343333 3345555444 5666777776655 455 46777777 44445554333
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcC-CcEEcCCCCchhhhh
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSVG-TCEEVPEYLLDGITG 283 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~iG-~~v~vdE~~~Da~tA 283 (303)
+.|.+ ..+.+.|+.+ .-| .++++++..+-..++
T Consensus 142 i~cTS----sNAvkvVe~~--~~~~~Iif~PD~~Lg~yva 175 (324)
T COG0379 142 ICCTS----SNAVKVVESA--LDGDKILFLPDKNLGRYVA 175 (324)
T ss_pred eEEec----chHHHHHHhc--cCCCcEEEcCcHHHHHHHH
Confidence 44443 2345566665 223 356777766554444
No 495
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=32.31 E-value=1.6e+02 Score=29.40 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=37.5
Q ss_pred CcEEEEcCChhhHHHHHHH----------HhhcH---HHHhhCCCeEecChHHh----------hc-CCCEEEEee-CCc
Q psy6714 133 SDKQIAGTTERGPGALIAS----------LNIVS---KATGTMGAKITFDNKEV----------TL-NSEVIILAV-KPH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a----------l~r~~---e~l~e~Gv~v~~d~~ea----------v~-~ADIVILAV-pP~ 187 (303)
-.++|+|+|.+|-+.+..+ .+.+. +.++++|.+...++.+. -. .+|++|-|+ ...
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~ 266 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVE 266 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHH
Confidence 3689999999987322221 11222 33468898755443322 23 689999999 466
Q ss_pred cHHHHHHhh
Q psy6714 188 IVPVALNDI 196 (303)
Q Consensus 188 ~v~~VL~eI 196 (303)
.++..++-.
T Consensus 267 ~~~~al~~~ 275 (366)
T COG1062 267 VMRQALEAT 275 (366)
T ss_pred HHHHHHHHH
Confidence 566555433
No 496
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.26 E-value=1.9e+02 Score=27.57 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred CCCEEEEee-CCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEE
Q psy6714 176 NSEVIILAV-KPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRA 231 (303)
Q Consensus 176 ~ADIVILAV-pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~ 231 (303)
.+|+|.|=- .|..+.+++..+...-.+.++.+-.++||+.+.+++....+..++.+
T Consensus 202 gaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 202 GADIIMLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 589888766 68888888876654322346778899999999999877644444433
No 497
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=32.20 E-value=1.2e+02 Score=30.43 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=19.0
Q ss_pred hhCCC--eEecChHHhhcCCCEEEEee
Q psy6714 160 GTMGA--KITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 160 ~e~Gv--~v~~d~~eav~~ADIVILAV 184 (303)
++.|. .++.|..++++++|+|..=+
T Consensus 244 ~~~G~~i~~~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 244 KASGGSFRQVNSMEEAFKDADIVYPKS 270 (395)
T ss_pred HHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 34564 55788899999999998764
No 498
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=32.18 E-value=68 Score=29.22 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=12.8
Q ss_pred cEEEEc-CChhhHHHHHHH
Q psy6714 134 DKQIAG-TTERGPGALIAS 151 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~a 151 (303)
+|.|+| +|.+|.. ++..
T Consensus 1 ~ilVtGatG~iG~~-vv~~ 18 (285)
T TIGR03649 1 TILLTGGTGKTASR-IARL 18 (285)
T ss_pred CEEEEcCCChHHHH-HHHH
Confidence 478887 6999994 5554
No 499
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=32.08 E-value=44 Score=33.84 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
|+||||.|.|-||. .+.+.
T Consensus 85 ~~kvgInGFGRIGR-~v~R~ 103 (421)
T PLN02272 85 KTKIGINGFGRIGR-LVLRI 103 (421)
T ss_pred ceEEEEECcCHHHH-HHHHH
Confidence 46999999999999 45443
No 500
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=31.23 E-value=42 Score=32.41 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=15.1
Q ss_pred CcEEEEcCChhhHHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a 151 (303)
|+|.|||.|.+|. +.+..
T Consensus 1 ~~v~IVG~Gi~Gl-s~A~~ 18 (416)
T PRK00711 1 MRVVVLGSGVIGV-TSAWY 18 (416)
T ss_pred CEEEEECCcHHHH-HHHHH
Confidence 6899999999998 56654
Done!