RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6714
(303 letters)
>gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase.
Length = 266
Score = 147 bits (372), Expect = 1e-42
Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
++G K N EV +S+VIILAVKP +V L +++P+ ++ LL+SVA G+ + ++++
Sbjct: 46 SLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE 105
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
R++R MPNTP LV + ASV G +A+ D V LF +VG V E LLD
Sbjct: 106 WAGGR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDA 164
Query: 281 ITGLSGSGPAYRY 293
+TGLSGSGPAY +
Sbjct: 165 VTGLSGSGPAYIF 177
>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 142 bits (362), Expect = 5e-41
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
G + DN+E ++V++LAVKP ++ L+++K + L++S+A GV + +E+ L
Sbjct: 49 GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLD--KLVVSIAAGVTLARLERLL 106
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP-EYLLDGI 281
+ ++RAMPNTPALV G + + S +D + V NL + G V E +D +
Sbjct: 107 GADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAV 166
Query: 282 TGLSGSGPAY 291
T +SGSGPAY
Sbjct: 167 TAVSGSGPAY 176
>gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase. This enzyme
catalyzes the final step in proline biosynthesis. Among
the four paralogs in Bacillus subtilis (proG, proH,
proI, and comER), ComER is the most divergent and does
not prevent proline auxotrophy from mutation of the
other three. It is excluded from the seed and scores
between the trusted and noise cutoffs [Amino acid
biosynthesis, Glutamate family].
Length = 245
Score = 142 bits (360), Expect = 5e-41
Identities = 52/135 (38%), Positives = 80/135 (59%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
+G + D +E ++V+ LAVKP + L+++K + LLIS+A GV ++ + Q
Sbjct: 28 ELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQ 87
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L R++R MPNTPA V G + ++ S++D V+ LFK+VG E+PE L+D
Sbjct: 88 LLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDA 147
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY +
Sbjct: 148 VTALSGSGPAYVFLF 162
>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid
transport and metabolism].
Length = 266
Score = 135 bits (343), Expect = 3e-38
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G T DN+E ++V+ LAVKP + L+ +KP+ + L+IS+A GV I+ +E+
Sbjct: 47 EYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDK-LVISIAAGVSIETLER 105
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L R++R MPNTPALV G + ++ S++D V L +VG EV E L+D
Sbjct: 106 LLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA 164
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY +
Sbjct: 165 VTALSGSGPAYVFLF 179
>gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional.
Length = 260
Score = 106 bits (265), Expect = 4e-27
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
N+E+ ++I+LAVKP + L +IKP S LLIS+ GG+ +K +E+ + ++I+
Sbjct: 51 NEELAKTCDIIVLAVKPDLAGKVLLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIV 109
Query: 230 RAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289
R MPNTP+LV QG+ VF ++ D + VI++F + G +E+ E +D T +SG GP
Sbjct: 110 RVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGP 169
Query: 290 AYRY 293
AY +
Sbjct: 170 AYVF 173
>gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed.
Length = 279
Score = 106 bits (266), Expect = 5e-27
Identities = 49/135 (36%), Positives = 73/135 (54%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G K T + KE+ ++ ++ LA+KP V AL K + + L+IS+ GV ++
Sbjct: 50 KYGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN 109
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L K+ IIRAMPNT A + + A+ A+ + QT LF+++G V E +
Sbjct: 110 LLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHA 169
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY Y V
Sbjct: 170 VTALSGSGPAYIYYV 184
>gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed.
Length = 272
Score = 100 bits (249), Expect = 9e-25
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 145 PGALIAS-LNIVS--KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFN 201
P +I S LN+ + A+ G IT +N EV +++++IL++KP + +N IK
Sbjct: 29 PDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIK 88
Query: 202 ESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVI 261
+++++A G IK+ E + ++IR MPNTP LV +G S +++D + V+
Sbjct: 89 NDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVL 148
Query: 262 NLFKSVGTCEEVPEYLLDGITGLSGSGPAYRY 293
N+F G E V E L+D +T +SGS PAY Y
Sbjct: 149 NIFNIFGQTEVVNEKLMDVVTSISGSSPAYVY 180
>gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed.
Length = 245
Score = 72.9 bits (179), Expect = 4e-15
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
T D K+ + + I+LA+ P L ++ P+ + + L+++VA G+ +E+
Sbjct: 51 RYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE 109
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
LPK + + MPNT A + + S++ G S ++ +T+ + K +GT + E +
Sbjct: 110 RLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQ 169
Query: 281 ITGLSGSGPAYRYE 294
+T ++GS PA+ Y
Sbjct: 170 LTAVTGSAPAFLYY 183
>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
Length = 273
Score = 58.1 bits (141), Expect = 8e-10
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
G + +EV S++I + VKP + L + P + + L+S+ + ++ +E +
Sbjct: 49 GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLV 108
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGIT 282
P ++ R +P+ GAS+F GS S++D Q + LF ++ T P + + IT
Sbjct: 109 P--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST----PLVIEEDIT 162
Query: 283 ----GLSGSGPAY 291
+ GPA+
Sbjct: 163 RVSSDIVSCGPAF 175
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 40.3 bits (95), Expect = 1e-04
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 129 RWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT-FDNKEVTLNSEVIILAVKPH 187
+ ++ R P A + G K T N+E ++V+ LAVKP
Sbjct: 17 GLAAAGHEVVIANSRNPEKAAALAEEL-------GVKATAVSNEEAVEEADVVFLAVKPE 69
Query: 188 IVPVALNDIKPVFNESNLLISVAGG 212
P L ++ + L+IS+ G
Sbjct: 70 DAPEVLAELADLLKGK-LVISITNG 93
>gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed.
Length = 277
Score = 40.5 bits (95), Expect = 5e-04
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
E+ + + V P V L D PV ++S+A GV + ++ + P +
Sbjct: 58 EAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQ-VS 116
Query: 230 RAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289
R +P+ + V G S+ + ++ + + + E +D + L+ S P
Sbjct: 117 RLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSP 176
Query: 290 AY 291
+
Sbjct: 177 GF 178
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.9 bits (80), Expect = 0.057
Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 6/152 (3%)
Query: 32 ASATREGPEAPYPTAQARSARKNASATTREAPEAPQHVLQREARGNKWQRDAREGSRTRP 91
++ A PT + RSAR A+ R Q + + P
Sbjct: 369 SAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAP 428
Query: 92 KQRNIPAQKREGNECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTER----GPGA 147
P E P AP T + + + + K + ER PGA
Sbjct: 429 PPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGA 488
Query: 148 LIASLNIVSKATGTMGAKITFDNKEVTLNSEV 179
+A L + + T G + +E + EV
Sbjct: 489 DLAEL--LGRHPDTAGTVVRLAAREAAIAREV 518
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 34.3 bits (78), Expect = 0.071
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 8 PARRARATETSQHTYASAKREGTNASATREGPEAPYPTAQARSARKNASATTREAPEAPQ 67
PA + T T+ +S + GT + T P P + +++ S + + P
Sbjct: 199 PATQGHQTATANQRLSSTEPVGTQGTTT---SSNPEPQTEPPPSQRGPSGSPQHPPSTTS 255
Query: 68 HVLQREARGNKWQRDAREGSRTRPKQRNIPAQKREGNECASRTPTRADATEAPTT 122
G + R + R P R T T PT
Sbjct: 256 QDQSTTGDGQE--HTQRRKTPPATSNRRSPHSTATPPPTTKRQETGR-PTPRPTA 307
>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
Length = 437
Score = 33.8 bits (78), Expect = 0.091
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNME 219
+G + DN + +++++I++V ++ + ++ P E +LL+ V P++ ME
Sbjct: 44 LGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME 103
Query: 220 QALPKNSRIIRA--M--PNTPALVRQ 241
+ P+ I+ M P TP+L Q
Sbjct: 104 EYAPEGVEILPTHPMFGPRTPSLKGQ 129
>gnl|CDD|216906 pfam02153, PDH, Prephenate dehydrogenase. Members of this family
are prephenate dehydrogenases EC:1.3.1.12 involved in
tyrosine biosynthesis.
Length = 258
Score = 33.1 bits (76), Expect = 0.14
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 179 VIILAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMP 233
+++LAV + L ++ P E L+ V +++ EQ L I P
Sbjct: 48 IVVLAVPIEVTLEVLKELAPHLKEGALITDVGSVKVKIVEDAEQLLCDGVGFIGGHP 104
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 32.2 bits (74), Expect = 0.17
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 165 KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213
+ T D +E +++I+LAV + L +K + + +L+S+ G+
Sbjct: 58 RATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGI 106
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 31.0 bits (71), Expect = 0.51
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
+D+K V + ++VAGG+ + + + I+
Sbjct: 146 PEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIV 183
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 31.7 bits (72), Expect = 0.62
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 11 RARATETSQH-----TYASAKREGTNASATREGPEAPY---PTAQARSARKNASATTREA 62
R R E + A RE +A R G + P A A +
Sbjct: 367 RRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAAL--AAQELQELGALD 424
Query: 63 P---EAPQHVLQREARGNKWQRDAREGSRTRPKQRNIPAQKREGNECASRTPTRADATEA 119
+A + + QR + +R R A++ E +E A + RA+ +
Sbjct: 425 ARRQDADRVIAQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADE 484
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 31.1 bits (71), Expect = 0.64
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMP 233
++++I+AV L ++ P + ++ V ++ ME+ LP + R + P
Sbjct: 64 EADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP 123
Query: 234 NT-PALVR---QGASVFV-RGSSASDQDAQTVINLFKSVG 268
P + A V + + + V L++++G
Sbjct: 124 MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALG 163
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 30.7 bits (70), Expect = 0.87
Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 152 LNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211
L I + + + E ++++I+ VK + + AL + P+ + +++ +
Sbjct: 43 LRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQN 102
Query: 212 GVPIKNMEQALPKNSRIIRAM---------PNTPALVRQGASVFVRGSSASDQDAQTVIN 262
G+ + + + ++ + P G +V D+ + +
Sbjct: 103 GLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAE 162
Query: 263 LFKSVG 268
LFK G
Sbjct: 163 LFKEAG 168
>gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed.
Length = 258
Score = 30.4 bits (69), Expect = 0.88
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 166 ITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKN 225
I DN+ V S+V+ LAV+P I L ++ F +ISV + + + +
Sbjct: 51 IAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHD 108
Query: 226 SRIIRAMPNTPALVRQG 242
+++RA+P R+G
Sbjct: 109 VKLVRAIPLPFVAERKG 125
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 29.5 bits (66), Expect = 2.1
Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 26 KREGTNASATREGPEAPYPTAQARSARKNASA--TTREAPEAPQHVLQREARGNKWQRDA 83
+R+G A P +A +A A A +AP V A G + R
Sbjct: 453 RRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVA---ADGERAPRKR 509
Query: 84 REGSRTRPKQRNIPAQKREGNECASRTPTRADATEAPTTPSS 125
R RP + P A R PT+ AT S
Sbjct: 510 RRRRNGRPVEGAEPVSTPVPAPAAPRKPTQVVATPVRAAAKS 551
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 29.5 bits (67), Expect = 2.5
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 2 RPQRIWPARRARATETSQHTYASAKREGTNASATREGPEAPYPTAQARSARKNASATTRE 61
+R AR + + + A+ R + R+ R+
Sbjct: 127 ARERRERGEAARRGAARK----AGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ 182
Query: 62 APEAPQHVLQREARGNKWQRDAREGSRTRPKQRN 95
A +R RG + +R R R +R
Sbjct: 183 AEA------ERGERGRREERGRDGDDRDRRDRRE 210
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 29.4 bits (66), Expect = 2.7
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 8 PARRARATETSQHTYASAKREGTNASATREGPEAPYPTAQARS-----------ARKNAS 56
PA+ ++ E+++ ++ +K T + E E P P A A AS
Sbjct: 83 PAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGGWWSLWGSITSTATSTAS 142
Query: 57 ATTREAPEAPQHVLQREARGNKWQRDARE 85
A ++A +A + Q EA W R
Sbjct: 143 AAVKQAEQAVNEIQQEEA--QLWAEQVRG 169
>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 291
Score = 29.1 bits (65), Expect = 3.1
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASD 254
+++ + ++ S G+ I + AL + R I PA V + V VR + S+
Sbjct: 106 ELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEV-VRAALTSE 164
Query: 255 QDAQTVINLFKSVG 268
+ T + L K +G
Sbjct: 165 ETFNTTVELSKKIG 178
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 29.3 bits (65), Expect = 3.1
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 12 ARATETSQHTYASAKREGTNASATREGPEAPYPTAQARSARKNASATTREAPEAPQHVLQ 71
A+ + S+ S K E + PE P + RSA++ T ++P+ P+ L
Sbjct: 564 AKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQR---PTRPKSPKLPE--LL 618
Query: 72 REARGNKWQRDAREGSRTRPKQRNIPAQKREGNECASRTPTRADATEAPTTPSSREARWN 131
+ K + R P QR ++ EG + ++P + + P P +E ++
Sbjct: 619 DIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK-IIKSPKPPKSPKPPFDPKFKEKFYD 677
Query: 132 RSDKQIAGTTE 142
A + E
Sbjct: 678 DYLDAAAKSKE 688
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 29.0 bits (65), Expect = 3.5
Identities = 24/125 (19%), Positives = 33/125 (26%), Gaps = 5/125 (4%)
Query: 8 PARRARATETSQHTYASAKREGTNASATREGPEAPYPTAQARSARKNASATTREAPEAPQ 67
A +A A + A A+A R A A ASA +R Q
Sbjct: 410 LAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQ 469
Query: 68 HVLQREARGNKWQRDAREGSRTRPKQRNIP----AQKREGNECASRTPTRADATEAPTTP 123
+ DA + P R + A +R DA A P
Sbjct: 470 PPADSGSASAPAS-DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
Query: 124 SSREA 128
+
Sbjct: 529 APEAR 533
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.0 bits (65), Expect = 4.2
Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 17 TSQHTYASAKREGTNASATREGPEAPYPTAQARSARKNASATTREAPEAPQHVLQREARG 76
T Q Y S+ N S R P P + PE + R
Sbjct: 3 TKQQHYRSS----DNYSGNRPIPTIPKFFRSRGQRAEKKEEEQEMQPEDEKLFAPIAQRT 58
Query: 77 NKWQRDAREGSRT-RPKQRNIPAQKREGNECASRTPTRADATEAPTTPSSREARWNRS-- 133
+ +G++ +P Q E S +P ++D + T PS
Sbjct: 59 VQIADVNFQGAKGIDDLSFTVPKQSIE-----SSSPEKSDVDTSNTRPSVSRELHKDDYV 113
Query: 134 -DKQIAGTTERGP 145
Q G +
Sbjct: 114 GPDQDGGWQRKVE 126
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 28.4 bits (64), Expect = 4.4
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 182 LAVKPHIVPV-----------ALNDIKPVFN-ESNLLISVAGGVPIKNMEQALPKNSRII 229
L VKP +V + A +IK + +L++VAGGV ++N+E+AL + I+
Sbjct: 296 LKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADIL 355
>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis.
Length = 211
Score = 28.2 bits (64), Expect = 4.6
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 30/108 (27%)
Query: 182 LAVKPHIVPVALNDIKPVFNESN--LLISV---AGGVPIKNMEQALPKNSRIIRAM---- 232
+A+ P PV ++P +E + L++SV GG K + + L K R +R +
Sbjct: 110 VALNPG-TPV--EVLEPYLDEVDLVLVMSVNPGFGGQ--KFIPEVLEK-IRKLRELIPEN 163
Query: 233 --------------PNTPALVRQGASVFVRGSSA-SDQDAQTVINLFK 265
P L GA V V GS+ D I +
Sbjct: 164 NLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211
>gnl|CDD|236281 PRK08517, PRK08517, DNA polymerase III subunit epsilon;
Provisional.
Length = 257
Score = 28.1 bits (63), Expect = 4.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 259 TVINLFKSVGTCEEVPEYL--LDGIT 282
+I+ F+S +EVPEY+ L GIT
Sbjct: 99 EIIDRFESFVKAKEVPEYITELTGIT 124
>gnl|CDD|235821 PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.
Length = 304
Score = 28.3 bits (64), Expect = 5.1
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 177 SEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV-PIKNMEQALPKNSRIIRAMPNT 235
+++ILAVK + +P AL + P+ ++ + GV ++ + + R++
Sbjct: 67 QDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPE-RVL------ 119
Query: 236 PALVRQGASV 245
+V A +
Sbjct: 120 GGVVTHAAEL 129
>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D.
Length = 1068
Score = 28.6 bits (64), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Query: 183 AVKPHIVPVALN-----DIKPVFNES 203
+V+ H+V L+ D++PVFNES
Sbjct: 1033 SVRGHLVSFPLDFMCQEDLRPVFNES 1058
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 28.5 bits (64), Expect = 6.0
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 23 ASAKREGTNASATREGPEAPYPTAQARSARKNASATTREAPEAPQHVLQREARGNKWQRD 82
A+ +A P P ++ A K + E Q + EA+
Sbjct: 547 AAPVVAAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKPE----- 601
Query: 83 AREGSRTRPKQRNIPAQKREGNECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTE 142
R+ R +P+Q N +R+ NE R TR + T + E R NR Q
Sbjct: 602 -RQQDRRKPRQNN----RRDRNE---RRDTRDNRTRREGRENREENRRNRRQAQQQTAET 653
Query: 143 R 143
R
Sbjct: 654 R 654
>gnl|CDD|226350 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 28.0 bits (63), Expect = 7.0
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSS 251
L D+ +S LL + G PI+++ Q N I+ N + G + G
Sbjct: 161 HLLDVVSAGEDSTLLEVLRTGKPIRDVVQTYNGNKIIV----NVAPVYADGQ---LIGVV 213
Query: 252 ASDQDAQTVINLFKSVGTCEEVP----EYLLDGITGLS 285
+D + L + + E + +Y D I G S
Sbjct: 214 GISKDVSELERLTRELEESEGLLRLKAKYTFDDIIGES 251
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.9 bits (62), Expect = 7.4
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 47 QARSARKNASATTREAPEAPQHVLQREARGNKWQRDAREGSRTRPKQRNIPAQKREGNEC 106
+ R+A KN + ++ + +RE Q A +R R ++ + A+K+ +
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393
Query: 107 ASRTPTRADATEAPTTPSSREA 128
+ T ++ E+ +P EA
Sbjct: 394 SPNEDTPSENEESKGSPPQVEA 415
>gnl|CDD|184851 PRK14849, PRK14849, putative lipoprotein/autotransporter
domain-containing protein; Provisional.
Length = 1806
Score = 27.8 bits (61), Expect = 9.7
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 226 SRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLS 285
+RI R + N V Q S R + + +NL KS G + L + LS
Sbjct: 2 NRIYRVIWNCTLQVFQACSELTRRVGKT-----STVNLRKSSGLTTKFSRLTLGVLLALS 56
Query: 286 GSGPAYRYEVTSNEVINL 303
GS EV ++++ N+
Sbjct: 57 GSASGASLEVDNDQITNI 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.125 0.354
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,677,657
Number of extensions: 1351113
Number of successful extensions: 1103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 84
Length of query: 303
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 207
Effective length of database: 6,679,618
Effective search space: 1382680926
Effective search space used: 1382680926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.0 bits)