RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6714
(303 letters)
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 185 bits (471), Expect = 1e-57
Identities = 50/133 (37%), Positives = 80/133 (60%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G T DN EV N++++IL++KP + +N+IK + +++++A G I++ E
Sbjct: 48 KYGLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN 107
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
A K +++R MPNTPALV +G S +++D + V+N+F S G E V E L+D
Sbjct: 108 AFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMDV 167
Query: 281 ITGLSGSGPAYRY 293
+T +SGS PAY Y
Sbjct: 168 VTSVSGSSPAYVY 180
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 178 bits (454), Expect = 5e-55
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
N+E+ + ++I+ AVKP I LN+IKP + LLIS+ GG+ I +E+ +
Sbjct: 45 TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSS-KLLISICGGLNIGKLEEMV 103
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGIT 282
++I+ MPNTP LV +G+ ++ + + D + V ++F S G E+ E +D T
Sbjct: 104 GSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIAT 163
Query: 283 GLSGSGPAYRY 293
+SG GPAY Y
Sbjct: 164 AISGCGPAYVY 174
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 176 bits (449), Expect = 1e-53
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Query: 157 KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK 216
A MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I
Sbjct: 65 SALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS 124
Query: 217 NMEQALP---KNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273
++E+ L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV
Sbjct: 125 SIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEV 184
Query: 274 PEYLLDGITGLSGSGPAYRY 293
E L+D +TGLSGSGPAY +
Sbjct: 185 EEDLIDAVTGLSGSGPAYAF 204
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 173 bits (442), Expect = 3e-53
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
+ ++++ +++IL +KP + L + +IS+A G+ ++ +
Sbjct: 45 QLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLAT 100
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
+ ++ ++R MPN A + Q ++ + S + V +L S G+ ++ E D
Sbjct: 101 FVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDT 160
Query: 281 ITGLSGSGPAYRY 293
T L+GS PAY Y
Sbjct: 161 FTALAGSSPAYIY 173
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 170 bits (434), Expect = 7e-52
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESN-LLISVAGGVPIKNME 219
G T DN++ LN++V++LAVKPH + + ++K + +E+ L+IS+A GV +E
Sbjct: 48 KCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIE 107
Query: 220 QALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP-EYLL 278
+ L K SRI+RAMPNTP+ VR GA+ + ++ ++VG V E +
Sbjct: 108 KWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQI 167
Query: 279 DGITGLSGSGPAY 291
+ I LSGSGPAY
Sbjct: 168 EKIAALSGSGPAY 180
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 156 bits (398), Expect = 1e-46
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 137 IAGTTERGPGALIAS---LNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193
G ++G + + + +G + + E+ + +V+ILAVKP + A
Sbjct: 16 AGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAAC 74
Query: 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253
+I+ L++SVA G+ + + + L RI+R MPNTP + G S + S
Sbjct: 75 KNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS 131
Query: 254 DQDAQTVINLFKSVGTCEEVP-EYLLDGITGLSGSGPAY 291
+ D + + KSVG + E + GITG+SGSGPAY
Sbjct: 132 ETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAY 170
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 37.3 bits (86), Expect = 0.004
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 169 DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRI 228
D ++V++LA+ +I+ DI P +++ + P + +
Sbjct: 60 DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPERADITYF 119
Query: 229 IRAMPNTPALVRQGASVFVRGSSASDQDAQTVI 261
I P P L R Q ++
Sbjct: 120 I-GHPCHPPLFNDETDPAARTDYHGGIAKQAIV 151
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 35.6 bits (81), Expect = 0.015
Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 22/171 (12%)
Query: 128 ARWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAK---ITFDNKEVTLNSEVIILAV 184
+ ++ G L +N + ++ IT D + ++V+IL V
Sbjct: 33 TLFADEAERWT--KALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTV 90
Query: 185 KPHIVPVALNDIKPVFNESNLLISVAG--GVPI--KNMEQALPKNSRIIRA--MPNTPAL 238
+ P +S L++ + G +++ ++ +P +
Sbjct: 91 PAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRI 150
Query: 239 VRQGASVFVRG-----------SSASDQDAQTVINLFKSVGTCEEVPEYLL 278
G V V G +A D + + + + ++ L
Sbjct: 151 KEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFL 201
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 33.0 bits (76), Expect = 0.10
Identities = 15/127 (11%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 149 IASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208
S+N+V +T ++ + S+++++ +K V A+ + + ++
Sbjct: 36 YCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILL 95
Query: 209 VAGGVPIKNMEQALPKNSRIIR------AMPNTPALVRQGASVFVRGS-SASDQDAQTVI 261
+ G + +E+ ++ A + ++ + G D D +
Sbjct: 96 IHNG--MGTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153
Query: 262 NLFKSVG 268
++ ++V
Sbjct: 154 DILQTVL 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.94
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Query: 215 IKNMEQALPKNSRIIRAMPNT-PALVRQGASV 245
+K ++ +L K + A ++ PAL + A++
Sbjct: 22 LKKLQASL-K----LYA-DDSAPALAIK-ATM 46
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 29.2 bits (66), Expect = 1.6
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 178 EVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIR------ 230
++II K + I+P+ E ++ + G+ +E+ +PK I+
Sbjct: 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKE-NILVGITMWT 134
Query: 231 AMPNTPALVRQ---GASVFVRGSSASDQDAQTVINLFKSVG 268
A P V+ G + + A V+++F+ G
Sbjct: 135 AGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAG 175
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 179 VIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL 238
V+I+AVK + I P+ ++ GVP ++ P + ++A+ +
Sbjct: 73 VVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRI 132
Query: 239 VR 240
+
Sbjct: 133 AQ 134
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 28.7 bits (65), Expect = 2.1
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 165 KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPK 224
D + +++++I V + + +K + IS+ GV L
Sbjct: 79 VAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLI- 137
Query: 225 NSRIIRAMPNTPALVRQGASV---FVRG-------SSASDQDAQTVINLFKS 266
S +I P V GA++ Q + L ++
Sbjct: 138 -SEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQT 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.5
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 54/162 (33%)
Query: 135 KQIAGTTERGPG----ALIAS-------LNIVSKATGTM---G--AKITFDNKEVTLNSE 178
+ G T G IA V KA + G + N
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN-------- 316
Query: 179 VIILAVKPHIV--PVALNDIKPVFNESNLLISVAGGVP-------IKNMEQALPKNSRII 229
++ P I+ + N+ P S +L S++ + + LP ++
Sbjct: 317 ---TSLPPSILEDSLENNEGVP----SPML-SISN-LTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 230 RAMPNTP----------ALVRQGASVFVRGSSASDQDAQTVI 261
++ N +L G ++ +R + A Q+ I
Sbjct: 368 ISLVNGAKNLVVSGPPQSL--YGLNLTLRKAKAPSGLDQSRI 407
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 27.9 bits (63), Expect = 3.6
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 234 NTPALVRQGASVFVRGSSA---SDQDAQTVINLFKS 266
L+ GA VF+ G+S ++ + +
Sbjct: 180 TYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTA 215
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 27.6 bits (62), Expect = 5.2
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 16/116 (13%)
Query: 165 KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFN----ESNLLISVAGGVPIKNMEQ 220
D V +++++I V + L IK + IS+ G +K +
Sbjct: 92 VAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQM 151
Query: 221 ALPKNSRIIRAMPNTPALVRQGASV---FVRG-------SSASDQDAQTVINLFKS 266
L S I N P GA++ +F
Sbjct: 152 KLC--SNYISDFLNIPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDL 205
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 27.3 bits (61), Expect = 6.7
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 169 DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQALPKN 225
+ + N++V+I++V ++ + +KP E+ LL + P+ M +
Sbjct: 58 VAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGA 116
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 26.8 bits (60), Expect = 8.0
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 147 ALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL 206
+ L I+ + T ++ K + + ++L+ + + +E +
Sbjct: 40 SKAVDLGIIDEGTTSI-------AKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATV 92
Query: 207 I---SVAGGVPIKNMEQALPKN 225
SV G + + ++E L K
Sbjct: 93 TDQGSVKGKL-VYDLENILGKR 113
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.3 bits (60), Expect = 8.1
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 204 NLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242
NL++ V G + + K +R+ +P A + +G
Sbjct: 831 NLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG 869
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia
coli} PDB: 2adn_A 2h3a_A 2h3c_A
Length = 72
Score = 25.3 bits (55), Expect = 8.2
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 46 AQARSARKNASATTREAPEAPQHVLQREARGNKWQRDAREG 86
++ N S + L+ E +W+ + +EG
Sbjct: 15 QLLKAYDVNISGLVSTTMQNEARRLRAE----RWKVENQEG 51
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 26.8 bits (60), Expect = 9.7
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 147 ALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL 206
+ L I+ + T ++ K + + ++L+ + + +E +
Sbjct: 72 SKAVDLGIIDEGTTSI-------AKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATV 124
Query: 207 I---SVAGGVPIKNMEQALPKN 225
SV G + + ++E L K
Sbjct: 125 TDQGSVKGKL-VYDLENILGKR 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.125 0.354
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,210,764
Number of extensions: 238268
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 32
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.0 bits)