RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6714
(303 letters)
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 62.3 bits (150), Expect = 1e-12
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 178 EVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA 237
+V+ILAVKP + A +I+ L++SVA G+ + + + L RI+R MPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIR---TNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 238 LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273
+ G S + S+ D + + KSVG +
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 49.7 bits (117), Expect = 4e-08
Identities = 16/81 (19%), Positives = 38/81 (46%)
Query: 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASD 254
+ + +IS+A G+ ++ + + ++ ++R MPN A + Q ++ + S
Sbjct: 72 TVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131
Query: 255 QDAQTVINLFKSVGTCEEVPE 275
+ V +L S G+ ++ E
Sbjct: 132 ELQARVRDLTDSFGSTFDISE 152
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 49.6 bits (118), Expect = 1e-07
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
Query: 163 GAKITFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
G K+T D++E ++++I + K + P + E ++ K +
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIF 187
Query: 222 LPKNSRIIRAMPNTPALVRQGAS-VFVRGSSASDQDAQTVINLFKSVG 268
+ P V + V++ AS++ + + K
Sbjct: 188 KDLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIAR 235
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase
ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 111
Score = 33.0 bits (75), Expect = 0.011
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 275 EYLLDGITGLSGSGPAYRYEVT 296
E + GITG+SGSGPAY + +
Sbjct: 2 EEKMHGITGISGSGPAYVFYLL 23
>d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase
ProC {Streptococcus pyogenes [TaxId: 1314]}
Length = 104
Score = 29.2 bits (65), Expect = 0.19
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 278 LDGITGLSGSGPAYRYEVT 296
D T L+GS PAY Y
Sbjct: 3 FDTFTALAGSSPAYIYLFI 21
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 30.3 bits (68), Expect = 0.27
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP 223
+ + +A++ I F + +L+ +A G + + L
Sbjct: 503 EDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLN 541
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 205
Score = 28.4 bits (63), Expect = 0.74
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 184 VKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNME-QALPKNSRIIRAMPNTPALVR 240
+ P + P+ L K + + +A V +K E + + P V
Sbjct: 25 IFPLLYPMLLLPSKVRTFIRSGRVYLA--VRLKEKETDEAYSYALLNVPTDGLPRFVE 80
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 27.9 bits (61), Expect = 1.1
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNL-----LISVAGGV--- 213
T D ++ +E+I+ + + ++ G+
Sbjct: 63 SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS 122
Query: 214 ----PIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKS 266
P + + + LP + A P+ V G V +SA A+ + + +
Sbjct: 123 TLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 179
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 27.8 bits (61), Expect = 1.8
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247
L D+ +L+ V VP+++ + + +RI+ ++P L+ GAS+ +
Sbjct: 4 LLDLD--PKGKRVLVRVDYNVPVQDGK--VQDETRILESLPTLRHLLAGGASLVL 54
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 27.5 bits (60), Expect = 2.3
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247
+N+ +LI V VP+KN + + + RI A+P ++ +G S +
Sbjct: 5 INECD--LKGKKVLIRVDFNVPVKNGK--ITNDYRIRSALPTLKKVLTEGGSCVL 55
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 27.0 bits (59), Expect = 3.7
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247
+ D+ +++ V VP+K+ + ++RI A+P + QGA V +
Sbjct: 5 IRDVD--LKGKRVIMRVDFNVPVKD--GVVQDDTRIRAALPTIKYALEQGAKVIL 55
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 26.5 bits (58), Expect = 4.7
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247
+ D+ + V VP++ + ++RI A+P L+ GA V +
Sbjct: 6 IRDVD--VRGKRVFCRVDFNVPMEQGA--ITDDTRIRAALPTIRYLIEHGAKVIL 56
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 25.8 bits (55), Expect = 6.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 139 GTTERGPGALIASLNIVSKATGTMGAKITFDNKEVTL 175
G+ G L S V + TG++ + F N L
Sbjct: 188 GSQYPLEGRLEFSEVSVDEGTGSVTIRAVFPNPNNEL 224
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.125 0.354
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 977,120
Number of extensions: 40444
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 13
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)