BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6716
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 154/243 (63%), Gaps = 19/243 (7%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137
NVKW+D+AGL+ AK+ L EA++LP P F R PW+G+LL GPPGTGK+ LAKA AT
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189
Query: 138 ET-KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTD 195
E S FF+I+SS L SKW G+SEKL++ LF LA+E PSI+F DEIDS+C RS ++
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 196 VTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQA 255
RR+K+E L QM G+ N +L+L ATN PW LD A RRR EKRIY+P+P+
Sbjct: 250 AARRIKTEFLVQMQGVGV-----DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304
Query: 256 TRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315
R ++ + L + + N + D + L + +GYS ADI+I+ RDA
Sbjct: 305 ARAAMFRLHLGSTQ----------NSLTEAD--FQELGRKTDGYSGADISIIVRDALMQP 352
Query: 316 LRR 318
+R+
Sbjct: 353 VRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 152/243 (62%), Gaps = 19/243 (7%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137
NVKW+D+AGL+ AK+ L EA++LP P F R PW+G+LL GPPGTGK+ LAKA AT
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 138 ET-KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTD 195
E S FF+I+SS L SKW G+SEKL++ LF LA+E PSI+F DEIDS+C RS ++
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 196 VTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQA 255
RR+K+E L QM G+ N +L+L ATN PW LD A RRR EKRIY+P+P+
Sbjct: 128 AARRIKTEFLVQMQGVGV-----DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182
Query: 256 TRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315
R ++ + L + N + D L + +GYS ADI+I+ RDA
Sbjct: 183 ARAAMFKLHLGTTQ----------NSLTEAD--FRELGRKTDGYSGADISIIVRDALMQP 230
Query: 316 LRR 318
+R+
Sbjct: 231 VRK 233
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 161/263 (61%), Gaps = 21/263 (7%)
Query: 70 SEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKT 129
S +L + NVKW D+AGL+ AK+ L EA++LP P F R+P G+LL GPPGTGK+
Sbjct: 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 98
Query: 130 MLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSH 189
LAKA ATE S FF+++SS L SKW G+SEKL++ LF +A+E PSI+F D++D++
Sbjct: 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158
Query: 190 RSTS-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIY 248
R ++ +RR+K+ELL QM+G+ + S + VL+L ATN PW LD A RRR E+RIY
Sbjct: 159 RGEGESEASRRIKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIY 213
Query: 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308
+P+PD A R ++ I + + VL + + L EGYS +DI +V
Sbjct: 214 IPLPDLAARTTMFEINVGDTP-------SVLTKE-----DYRTLGAMTEGYSGSDIAVVV 261
Query: 309 RDAAFMNLRRYLNQNPAVAMKDI 331
+DA +R+ A KD+
Sbjct: 262 KDALMQPIRKI---QSATHFKDV 281
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 161/263 (61%), Gaps = 21/263 (7%)
Query: 70 SEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKT 129
S +L + NVKW D+AGL+ AK+ L EA++LP P F R+P G+LL GPPGTGK+
Sbjct: 24 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 83
Query: 130 MLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSH 189
LAKA ATE S FF+++SS L SKW G+SEKL++ LF +A+E PSI+F D++D++
Sbjct: 84 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 143
Query: 190 RSTS-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIY 248
R ++ +RR+K+ELL QM+G+ + S + VL+L ATN PW LD A RRR E+RIY
Sbjct: 144 RGEGESEASRRIKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIY 198
Query: 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308
+P+PD A R ++ I + + VL + + L EGYS +DI +V
Sbjct: 199 IPLPDLAARTTMFEINVGDTPC-------VLTKE-----DYRTLGAMTEGYSGSDIAVVV 246
Query: 309 RDAAFMNLRRYLNQNPAVAMKDI 331
+DA +R+ A KD+
Sbjct: 247 KDALMQPIRKI---QSATHFKDV 266
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 21/260 (8%)
Query: 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLA 132
L + NVKW D+AGL+ AK+ L EA++LP P F R+P G+LL GPPGTGK+ LA
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 77
Query: 133 KAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST 192
KA ATE S FF+++SS L SKW G+SEKL++ LF +A+E PSI+F DE+D++ R
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 137
Query: 193 S-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPI 251
++ +RR+K+ELL QM+G+ + S + VL+L ATN PW LD A RRR E+RIY+P+
Sbjct: 138 GESEASRRIKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPL 192
Query: 252 PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311
PD A R ++ ++N+ + K+ + L EGYS +DI +V +DA
Sbjct: 193 PDLAARTTMF-----------EINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDA 240
Query: 312 AFMNLRRYLNQNPAVAMKDI 331
+R+ A KD+
Sbjct: 241 LMQPIRKI---QSATHFKDV 257
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 162/264 (61%), Gaps = 21/264 (7%)
Query: 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGK 128
+ +L + NVKW D+AGL+ AK+ L EA++LP P F R+P G+LL GPPGTGK
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 64
Query: 129 TMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCS 188
+ LAKA ATE S FF+++SS L SKW G+SEKL++ LF +A+E PSI+F D++D++
Sbjct: 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG 124
Query: 189 HRSTS-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRI 247
R ++ +RR+K+ELL QM+G+ + S + VL+L ATN PW LD A RRR E+RI
Sbjct: 125 TRGEGESEASRRIKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRI 179
Query: 248 YVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307
Y+P+PD A R ++ ++N+ + K+ + L EGYS +DI +V
Sbjct: 180 YIPLPDLAARTTMF-----------EINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVV 227
Query: 308 CRDAAFMNLRRYLNQNPAVAMKDI 331
+DA +R+ A KD+
Sbjct: 228 VKDALMQPIRKI---QSATHFKDV 248
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 182/303 (60%), Gaps = 22/303 (7%)
Query: 68 ILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTG 127
I++E++ T VK+ DIAG D AK L E ++LPS+ P F LR P +G+LL GPPG G
Sbjct: 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNG 160
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDS-M 186
KTMLAKA A E+ + FFNI++++LTSK+ G+ EKL+R LF +A+EL PSI+F D++DS +
Sbjct: 161 KTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL 220
Query: 187 CSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKR 246
C R D +RR+K+E L + DG+ S ++ VL++ ATN P +LDEA RR KR
Sbjct: 221 CERREGEHDASRRLKTEFLIEFDGVQSAGDD----RVLVMGATNRPQELDEAVLRRFIKR 276
Query: 247 IYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306
+YV +P++ TR+ LL K + + L LA +GYS +D+T
Sbjct: 277 VYVSLPNEETRLLLLKN--LLCKQGSPLTQKEL----------AQLARMTDGYSGSDLTA 324
Query: 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTD 366
+ +DAA +R + +K++ E+ + I +DF E+++ ++V P+ E +
Sbjct: 325 LAKDAALGPIRELKPEQ----VKNMSASEM-RNIRLSDFTESLKKIKRSVSPQTLEAYIR 379
Query: 367 WIK 369
W K
Sbjct: 380 WNK 382
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 21/301 (6%)
Query: 68 ILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTG 127
IL E+++ V+W DIAG D AK L E ++LPS+ P F LR P KG+LL GPPG G
Sbjct: 7 ILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNG 66
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187
KT+LA+A ATE + F NI++++LTSK+ GD EKL+R LF +A+ + PSI+F DE+DS+
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 188 SHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKR 246
S RS+S + +RR+K+E L + DGL N D ++ +++LAATN P +LDEA RR KR
Sbjct: 127 SERSSSEHEASRRLKTEFLVEFDGLP--GNPDGDR-IVVLAATNRPQELDEAALRRFTKR 183
Query: 247 IYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306
+YV +PD+ TR LL LQ K ++ E L LA+ +GYS +D+T
Sbjct: 184 VYVSLPDEQTRELLLNRLLQ--KQGSPLDTEALR----------RLAKITDGYSGSDLTA 231
Query: 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTD 366
+ +DAA +R LN V D +AI + DF +++ ++V P+ +
Sbjct: 232 LAKDAALEPIRE-LN----VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEK 286
Query: 367 W 367
W
Sbjct: 287 W 287
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 181/303 (59%), Gaps = 22/303 (7%)
Query: 68 ILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTG 127
I++E++ V W DIAG++ AK + E +V P + P F LR P KG+LL GPPGTG
Sbjct: 70 IMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTG 129
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187
KT++ K A+++ + FF+I++S+LTSKW G+ EK++R LF +A+ P+++F DEIDS+
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 188 SHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKR 246
S R + +RR+K+E L Q+DG A+ S+ED +L++ ATN P ++DEA RRRL KR
Sbjct: 190 SQRGDGEHESSRRIKTEFLVQLDG-ATTSSED---RILVVGATNRPQEIDEAARRRLVKR 245
Query: 247 IYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306
+Y+P+P+ + R ++ +N+ + IE + ++ + +S AD+T
Sbjct: 246 LYIPLPEASARKQIV------------INLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293
Query: 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTD 366
+CR+A+ +R + A PD+ + I DF+ A R +V P+D E + +
Sbjct: 294 LCREASLGPIRSLQTADIATI---TPDQV--RPIAYIDFENAFRTVRPSVSPKDLELYEN 348
Query: 367 WIK 369
W K
Sbjct: 349 WNK 351
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 26/251 (10%)
Query: 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTG 127
L E + V W DI GL+D K L E + P P F K P KGVL GPPG G
Sbjct: 464 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 523
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187
KT+LAKA A E ++NF +I L + W+G+SE +R +F A++ AP ++FFDE+DS+
Sbjct: 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Query: 188 SHR----STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR-- 241
R R+ +++L +MDG+++ K+V I+ ATN P +D A R
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFIIGATNRPDIIDPAILRPG 637
Query: 242 RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSS 301
RL++ IY+P+PD+ +RV++L L+ V KDV++E LA+ G+S
Sbjct: 638 RLDQLIYIPLPDEKSRVAILKANLR-------------KSPVAKDVDLEFLAKMTNGFSG 684
Query: 302 ADITIVCRDAA 312
AD+T +C+ A
Sbjct: 685 ADLTEICQRAC 695
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+ G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 26/251 (10%)
Query: 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTG 127
L E + V W DI GL+D K L E + P P F K P KGVL GPPG G
Sbjct: 464 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 523
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187
KT+LAKA A E ++NF +I L + W+G+SE +R +F A++ AP ++FFDE+DS+
Sbjct: 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Query: 188 SHR----STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR-- 241
R R+ +++L +MDG+++ K+V I+ ATN P +D A R
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFIIGATNRPDIIDPAILRPG 637
Query: 242 RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSS 301
RL++ IY+P+PD+ +RV++L L+ V KDV++E LA+ G+S
Sbjct: 638 RLDQLIYIPLPDEKSRVAILKANLR-------------KSPVAKDVDLEFLAKMTNGFSG 684
Query: 302 ADITIVCRDAA 312
AD+T +C+ A
Sbjct: 685 ADLTEICQRAC 695
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + DI G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 26/251 (10%)
Query: 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKL-RRPWKGVLLVGPPGTG 127
L E + V W DI GL+D K L E + P P F K P KGVL GPPG G
Sbjct: 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 61
Query: 128 KTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187
KT+LAKA A E ++NF +I L + W+G+SE +R +F A++ AP ++FFDE+DS+
Sbjct: 62 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121
Query: 188 SHR----STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR-- 241
R R+ +++L +MDG+++ K+V I+ ATN P +D A R
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFIIGATNRPDIIDPAILRPG 175
Query: 242 RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSS 301
RL++ IY+P+PD+ +RV++L L+ V KDV++E LA+ G+S
Sbjct: 176 RLDQLIYIPLPDEKSRVAILKANLR-------------KSPVAKDVDLEFLAKMTNGFSG 222
Query: 302 ADITIVCRDAA 312
AD+T +C+ A
Sbjct: 223 ADLTEICQRAC 233
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 139/256 (54%), Gaps = 29/256 (11%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAA 136
NV++ DI GL+ + E + LP P F+K+ P KG+LL GPPGTGKT+LAKA A
Sbjct: 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72
Query: 137 TETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS---TS 193
TET + F + S L K+ G+ L++ +F LAKE APSI+F DEID++ + R+ T
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 194 TDV-TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVP 250
D +R +LL +MDG D V I+ ATN P LD A R R ++ I VP
Sbjct: 133 GDREVQRTLMQLLAEMDGF------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186
Query: 251 IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310
PD+ R+ +L I + + + +DVN+E +A+ EG A++ +C +
Sbjct: 187 APDEKGRLEILKIHTR-------------KMNLAEDVNLEEIAKMTEGCVGAELKAICTE 233
Query: 311 A---AFMNLRRYLNQN 323
A A LR Y+ +
Sbjct: 234 AGMNAIRELRDYVTMD 249
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 141/249 (56%), Gaps = 22/249 (8%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPW-KGVLLVGPPGTGKTMLAKAAA 136
NV WADI L+D ++ L AI+ P P F L GVLL GPPG GKT+LAKA A
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 137 TETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTD 195
E+ NF ++ L + + G+SE+ +R +F AK AP ++FFDE+D++C RS T
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 196 VTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPD 253
+ R+ ++LL +MDGL + + V I+AATN P +D A R RL+K ++V +P
Sbjct: 126 ASVRVVNQLLTEMDGL------EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 254 QATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE--RLEGYSSADITIVCRDA 311
A R+++L +N +D DVN+E +A R + Y+ AD++ + R+A
Sbjct: 180 PADRLAILKTITKNGT----------KPPLDADVNLEAIAGDLRCDCYTGADLSALVREA 229
Query: 312 AFMNLRRYL 320
+ LR+ +
Sbjct: 230 SICALRQEM 238
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + DI G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + DI G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + DI G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 147/269 (54%), Gaps = 29/269 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+ G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 375 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421
Query: 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQA 343
+R+ ++ + D+ D+ +D ++ +
Sbjct: 422 AIRKKMD------LIDLEDETIDAEVMNS 444
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 127/244 (52%), Gaps = 26/244 (10%)
Query: 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATET 139
++DI GL+ + E++ LP P ++++ +P KGV+L G PGTGKT+LAKA A +T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR----STSTD 195
+ F I S L K+ GD +L R +F +A E APSIVF DEID++ + R S
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 196 VTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPD 253
+R ELL Q+DG D V ++ ATN LD A R R++++I PD
Sbjct: 301 EIQRTMLELLNQLDGF------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 254 QATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAF 313
+T+ +L I + + +DVN+E L D S ADI +C +A
Sbjct: 355 LSTKKKILGIHTSKMNLSEDVNLETLVTTKDD-------------LSGADIQAMCTEAGL 401
Query: 314 MNLR 317
+ LR
Sbjct: 402 LALR 405
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 132/247 (53%), Gaps = 25/247 (10%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137
NV++ D+AG ++AK+ + E + Y + + KGVLLVGPPGTGKT+LAKA A
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-----T 192
E FF++ S+ + G +R LF AK+ APSI+F DEID++ R+ +
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 193 STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVP 250
D + ++LL +MDG S N V++LAATN P LD A R R ++++ V
Sbjct: 127 GNDEREQTLNQLLAEMDGFGS-----ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181
Query: 251 IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310
PD RV +L + ++ VK+ DVN++ +A+ G + AD+ + +
Sbjct: 182 KPDFNGRVEILKVHIK-------------GVKLANDVNLQEVAKLTAGLAGADLANIINE 228
Query: 311 AAFMNLR 317
AA + R
Sbjct: 229 AALLAGR 235
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 28/242 (11%)
Query: 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPW-KGVLLVGPPGTGKTMLAKAAATETKSN 142
+ GL + E I LP P F+ L KGV+L GPPGTGKT+LA+A A T
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR-----STSTDVT 197
F ++ + L K+ G+ +++R LF++A+E APSI+F DEIDS+ S R ++V
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQA 255
R M ELL Q+DG + +K++ I+ ATN LD A R R++++I P P A
Sbjct: 270 RTM-LELLNQLDGF------ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
Query: 256 TRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315
R +L I + + + + +N+ +AE++ G S AD+ VC +A
Sbjct: 323 ARAEILRIHSR-------------KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369
Query: 316 LR 317
LR
Sbjct: 370 LR 371
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 26/249 (10%)
Query: 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKA 134
+ + + I GL + L E I LP P F ++ +P KGVLL GPPGTGKT+LAKA
Sbjct: 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234
Query: 135 AATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR-STS 193
A +NF +S + K+ G+S ++IR +F AKE P I+F DE+D++ R S
Sbjct: 235 VAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG 294
Query: 194 TDVTRRMKS---ELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIY 248
T R ++ ELL QMDG ++ I+ ATN P LD A R RL++++
Sbjct: 295 TSADREIQRTLMELLTQMDGFDNLGQ------TKIIMATNRPDTLDPALLRPGRLDRKVE 348
Query: 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308
+P+P++A R+ + I VK + + E VK+ +G++ ADI
Sbjct: 349 IPLPNEAGRLEIFKIHTAKVKKTGEFDFEAA-VKMS------------DGFNGADIRNCA 395
Query: 309 RDAAFMNLR 317
+A F +R
Sbjct: 396 TEAGFFAIR 404
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 130/245 (53%), Gaps = 28/245 (11%)
Query: 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATET 139
++D+ GLD + L EAIVLP F + R KG L+ GPPGTGKT+LA+A A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR-----STST 194
+ F + + L + G+ KL+R F LAKE AP+I+F DE+D++ + R S
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 195 DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIP 252
+V R M ELL Q+DG +S + V +LAATN LD A R RL+++I P+P
Sbjct: 300 EVQRTM-LELLNQLDGFSS------DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352
Query: 253 DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312
+ +R +L I + + D D+N + L D+ ++ A + V +A
Sbjct: 353 SEDSRAQILQIHSRKMTTDDDINWQELARSTDE-------------FNGAQLKAVTVEAG 399
Query: 313 FMNLR 317
+ LR
Sbjct: 400 MIALR 404
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 31/269 (11%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+ G ++A + L E + P+ F+++ R KG+LLVGPPGTGKT+LA+A A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKD-PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----S 193
E FF+I+ S + G +R LF AK AP IVF DEID++ HR
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 194 TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPI 251
D + ++LL +MDG D + ++++AATN P LD A R R +K+I V
Sbjct: 132 HDEREQTLNQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 252 PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311
PD R +L I + N + +DVN+E++A+R G+ AD+ + +A
Sbjct: 186 PDMLGRKKILEIHTR-------------NKPLAEDVNLEIIAKRTPGFVGADLENLVNEA 232
Query: 312 AFMNLRRYLNQNPAVAMKDIPDKELDKAI 340
A + R ++ + MKD ++ +D+ I
Sbjct: 233 ALLAAREGRDK---ITMKDF-EEAIDRVI 257
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 140/269 (52%), Gaps = 31/269 (11%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+ G ++A + L E + P+ F+++ R KG+LLVGPPGTG T+LA+A A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKD-PSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----S 193
E FF+I+ S + G +R LF AK AP IVF DEID++ HR
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 194 TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPI 251
D + ++LL +MDG D + ++++AATN P LD A R R +K+I V
Sbjct: 132 HDEREQTLNQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 252 PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311
PD R +L I + N + +DVN+E++A+R G+ AD+ + +A
Sbjct: 186 PDMLGRKKILEIHTR-------------NKPLAEDVNLEIIAKRTPGFVGADLENLVNEA 232
Query: 312 AFMNLRRYLNQNPAVAMKDIPDKELDKAI 340
A + R ++ + MKD ++ +D+ I
Sbjct: 233 ALLAAREGRDK---ITMKDF-EEAIDRVI 257
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAA 136
+V +AD+ GLD K + EA+ LP + ++++ P +GVLL GPPGTGKTML KA A
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 137 TETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR---STS 193
TK+ F + S K+ G+ +++R +F LA+E APSI+F DE+DS+ + R T
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 194 TDV-TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVP 250
+D +R+ ELL QMDG D + +V ++ ATN LD A R RL+++I P
Sbjct: 288 SDREVQRILIELLTQMDGF------DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 341
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 19/240 (7%)
Query: 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATET 139
+AD+AG D+AK+ + E +V P+ F KL + KGVL+VGPPGTGKT+LAKA A E
Sbjct: 11 FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRR 199
K FF I+ S + G +R +F AK+ AP I+F DEID++ R
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 200 MKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATR 257
+ + L QM L + + N+ ++++AATN P LD A R R ++++ V +PD R
Sbjct: 130 EREQTLNQM--LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187
Query: 258 VSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLR 317
+L + ++ V + D++ ++A G+S AD+ + +AA R
Sbjct: 188 EQILKVHMR-------------RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAA 136
+V ++D+ G D + L E + LP + P F L P KG+LL GPPGTGKT+ A+A A
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 137 TETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR----ST 192
T + F + S L K+ G+ +++R LF +A+ I+FFDEID++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 193 STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVP 250
+ +R EL+ Q+DG DP ++ ++ ATN P LD A R R+++++
Sbjct: 325 GDNEVQRTMLELITQLDGF------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS 378
Query: 251 IPDQATRVSLLTIFLQNVKVDKDVNIEVLN 280
+PD R ++ I +++ V++ + E+++
Sbjct: 379 LPDLEGRANIFRIHSKSMSVERGIRWELIS 408
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 28/249 (11%)
Query: 78 NVKWADIAGLDDAKDLLYEAI-VLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAA 135
V + D+AG+ +AK + E + L S P F +L + KG LL+GPPG GKT+LAKA
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKS--PERFLQLGAKVPKGALLLGPPGCGKTLLAKAV 59
Query: 136 ATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195
ATE + F + + G +R LF A+ AP IV+ DEID++ RST+
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 196 VTRRMKSE-----LLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIY 248
+ E LL +MDG+ + + V++LA+TN LD A R RL++ ++
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGMGTTDH------VIVLASTNRADILDGALMRPGRLDRHVF 173
Query: 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308
+ +P R + L+++K+ + + LAE G+S ADI +C
Sbjct: 174 IDLPTLQERREIFEQHLKSLKLTQSSTF-----------YSQRLAELTPGFSGADIANIC 222
Query: 309 RDAAFMNLR 317
+AA R
Sbjct: 223 NEAALHAAR 231
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGK 128
L VL V + D+AG ++AK+ L E + + + R KGVLLVGPPG GK
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 129 TMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCS 188
T LA+A A E + F + S + G +R LF AK AP IVF DEID++
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122
Query: 189 HRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--R 242
R + D + ++LL +MDG + + +++++AATN P LD A R R
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGR 176
Query: 243 LEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSA 302
+++I + PD R +L I + + +DV++ +LA+R G+ A
Sbjct: 177 FDRQIAIDAPDVKGREQILRIHAR-------------GKPLAEDVDLALLAKRTPGFVGA 223
Query: 303 D 303
D
Sbjct: 224 D 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 26/206 (12%)
Query: 105 PAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLI 163
P+ F ++ R KGVLLVGPPG GKT LA+A A E + F + S + G +
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121
Query: 164 RLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDP 219
R LF AK AP IVF DEID++ R + D + ++LL +MDG +
Sbjct: 122 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------EK 175
Query: 220 NKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIE 277
+ +++++AATN P LD A R R +++I + PD R +L I +
Sbjct: 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------- 224
Query: 278 VLNVKVDKDVNIEVLAERLEGYSSAD 303
+ +DV++ +LA+R G+ AD
Sbjct: 225 --GKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 26/206 (12%)
Query: 105 PAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLI 163
P+ F ++ R KGVLLVGPPG GKT LA+A A E + F + S + G +
Sbjct: 53 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 112
Query: 164 RLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDP 219
R LF AK AP IVF DEID++ R + D + ++LL +MDG +
Sbjct: 113 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------EK 166
Query: 220 NKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIE 277
+ +++++AATN P LD A R R +++I + PD R +L I +
Sbjct: 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------- 215
Query: 278 VLNVKVDKDVNIEVLAERLEGYSSAD 303
+ +DV++ +LA+R G+ AD
Sbjct: 216 --GKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 26/206 (12%)
Query: 105 PAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLI 163
P+ F ++ R KGVLLVGPPG GKT LA+A A E + F + S + G +
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121
Query: 164 RLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDP 219
R LF AK AP IVF DEID++ R + D + ++LL +MDG +
Sbjct: 122 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------EK 175
Query: 220 NKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIE 277
+ +++++AATN P LD A R R +++I + PD R +L I +
Sbjct: 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----------- 224
Query: 278 VLNVKVDKDVNIEVLAERLEGYSSAD 303
+ +DV++ +LA+R G+ AD
Sbjct: 225 --GKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE--KLIRLLFLLAKEL 173
K +L++GP G GKT +A+ A + F + ++ T Y E +IR L A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 174 APS-----IVFFDEIDSMCSHRSTS-TDVTRR-MKSELLCQMDGLASVSNEDPNKS--VL 224
+ IVF DEID +C S DV+R ++ +LL ++G + K+ +L
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170
Query: 225 ILAATNF----PWDLDEAFRRRLEKRI 247
+A+ F P DL + RL R+
Sbjct: 171 FIASGAFQVARPSDLIPELQGRLPIRV 197
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY--GDSEKLIRLLFLLA----K 171
+LL+GP G+GKT+LA+ A F ++TLT Y D E +I+ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 172 ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207
+ IV+ D+ID + S +S + +TR + E + Q
Sbjct: 114 KAQRGIVYIDQIDKI-SRKSDNPSITRDVSGEGVQQ 148
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY--GDSEKLIRLLFLLA----K 171
+LL+GP G+GKT+LA+ A F ++TLT Y D E +I+ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 172 ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207
+ IV+ D+ID + S +S + +TR + E + Q
Sbjct: 114 KAQRGIVYIDQIDKI-SRKSDNPSITRDVSGEGVQQ 148
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY--GDSEKLIRLLFLLA----K 171
+LL+GP G+GKT++A+ A +++LT Y D E ++ L + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 172 ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207
+ IVF DEID + S S + +TR + E + Q
Sbjct: 135 KAQKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQ 169
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTSKWYGDSEKLI----RL 165
+ + VLL GPPGTGKT LA A A E S F S + S +E L R
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRA 133
Query: 166 LFLLAKELAPSIV 178
+ L KE P I+
Sbjct: 134 IGLRIKEGPPGII 146
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 42/171 (24%)
Query: 118 VLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKE 172
+L GPPGTGKT A A A + + NF + +S E+ I ++ KE
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 173 LAPS---------IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV 223
A + I+F DE D++ + + T M S KS
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS------------------KSC 133
Query: 224 LILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF-LQNVKVDKD 273
+ + N+ + E + R + P+P +A + LL I + VK+ +D
Sbjct: 134 RFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL 173
P + +LL GPPG GKT LA A E N +TS K GD L +LA L
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GD------LAAILANSL 88
Query: 174 APS-IVFFDEIDSMC 187
I+F DEI +
Sbjct: 89 EEGDILFIDEIHRLS 103
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAK 171
+ P + +LL GPPG GKT LA A E N +TS K GD L +LA
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GD------LAAILAN 86
Query: 172 ELAPS-IVFFDEIDSMC 187
L I+F DEI +
Sbjct: 87 SLEEGDILFIDEIHRLS 103
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAK 171
+ P + +LL GPPG GKT LA A E N +TS K GD L +LA
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GD------LAAILAN 86
Query: 172 ELAPS-IVFFDEIDSMC 187
L I+F DEI +
Sbjct: 87 SLEEGDILFIDEIHRLS 103
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 42/171 (24%)
Query: 118 VLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKE 172
+L GPPGTGKT A A A + + NF + +S E+ I ++ KE
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 173 LAPS---------IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV 223
A + I+F DE D++ + + T M S KS
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS------------------KSC 133
Query: 224 LILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF-LQNVKVDKD 273
+ + N+ + E + R + P+P +A + LL I + VK+ +D
Sbjct: 134 RFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG GKT LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG GKT LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG GKT LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG GKT LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG GKT LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKG--VLLVGPPGTGKTMLAKAAATETKSNF 143
GL+ K+ + E + + KL + KG + L GPPG GKT LAK+ A F
Sbjct: 85 GLEKVKERILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136
Query: 144 FNITSSTL--TSKWYGDSEKLI-----RLLFLLAK--ELAPSIVFFDEIDSMCS 188
I+ + S+ G + R++ + K +L P + DEID M S
Sbjct: 137 VRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSS 189
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTSKWYGDSEKLI 163
+ + VLL GPPGTGKT LA A A E S F + S + S +E L+
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 89 DAKDLLYEAIVLPSIIPAYFDK----LRRPWKGVLLVGPPGTGKTMLAKAA 135
+A +++ IV+P+I +K L +G++L GPPG+GKTM+ A
Sbjct: 1018 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNA 1068
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAA------------TETKSNFFNITSSTLTSKWYGDS 159
RR LLVG G GKT +A+ A + +I S +K+ GD
Sbjct: 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263
Query: 160 EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS 193
EK + L ++ SI+F DEI ++ + S
Sbjct: 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS 297
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
VLL GPPG G+T LA A+E ++N ++TS + K GD + +L +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVKQ-GD------MAAILTSLERGDV 105
Query: 178 VFFDEIDSM 186
+F DEI +
Sbjct: 106 LFIDEIHRL 114
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 89 DAKDLLYEAIVLPSIIPAYFDK----LRRPWKGVLLVGPPGTGKTMLAKAA 135
+A +++ IV+P+I +K L +G++L GPPG+GKTM+ A
Sbjct: 1237 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNA 1287
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE----KLIRLLF 167
R P VLL GPP +GKT LA A E+ F I S K G SE + ++ +F
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 116
Query: 168 LLAKELAPSIVFFDEIDSMCSH 189
A + S V D+I+ + +
Sbjct: 117 DDAYKSQLSCVVVDDIERLLDY 138
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE----KLIRLLF 167
R P VLL GPP +GKT LA A E+ F I S K G SE + ++ +F
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 117
Query: 168 LLAKELAPSIVFFDEIDSMCSH 189
A + S V D+I+ + +
Sbjct: 118 DDAYKSQLSCVVVDDIERLLDY 139
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE 160
K +L++GP G GKT +A+ A + F + ++ T Y E
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 176 SIVFFDEIDSMCSH-RSTSTDVTRR-MKSELLCQMDGLASVSNEDPNKS--VLILAATNF 231
IVF DEID +C S+ DV+R ++ +LL ++G + K+ +L +A+ F
Sbjct: 251 GIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAF 310
Query: 232 ----PWDLDEAFRRRLEKRI 247
P DL + RL R+
Sbjct: 311 QIAKPSDLIPELQGRLPIRV 330
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE 160
K +L++GP G GKT +A+ A + F + ++ T Y E
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 176 SIVFFDEIDSMCSH-RSTSTDVTRR-MKSELLCQMDGLASVSNEDPNKS--VLILAATNF 231
IVF DEID +C S+ DV+R ++ +LL ++G + K+ +L +A+ F
Sbjct: 250 GIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAF 309
Query: 232 ----PWDLDEAFRRRLEKRI 247
P DL + RL R+
Sbjct: 310 QIAKPSDLIPELQGRLPIRV 329
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE 160
K +L++GP G GKT +A+ A + F + ++ T Y E
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 101
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 176 SIVFFDEIDSMCSH-RSTSTDVTRR-MKSELLCQMDGLASVSNEDPNKS--VLILAATNF 231
IVF DEID +C S+ DV+R ++ +LL ++G + K+ +L +A+ F
Sbjct: 257 GIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAF 316
Query: 232 ----PWDLDEAFRRRLEKRI 247
P DL + RL R+
Sbjct: 317 QIAKPSDLIPELQGRLPIRV 336
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 16/54 (29%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRL 165
+RP + +GP G GKT LA+A L +GD E +IR+
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARA----------------LAESIFGDEESMIRI 555
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFF-------NITSSTLTSKWYGDSEKLIR 164
RR +L+G PG GKT +A+ A + +N + + + +K+ G+ E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 165 LLFLLAKELAPSIVFFD 181
+ ++ I+F D
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156
K +L++GP G GKT +A+ A + F + ++ T Y
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 118 VLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKE 172
+L GPPG GKT A A A E + NF + +S E+ I ++ KE
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS---------DERGINVIREKVKE 99
Query: 173 LAPS---------IVFFDEIDSMCSHRSTSTDVTRRMKS 202
A + I+F DE D++ + T M S
Sbjct: 100 FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS 138
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 63 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 110
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
VLL+G PGTGK+ML +A A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSN------------FFNITSSTLTSKWYGD- 158
RR +L+G PG GKT + + A + ++ + +K+ G+
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99
Query: 159 SEKLIRLLFLLAKELAPSIVFFDEIDSMCS 188
E+L +L LAK+ I+F DE+ +M
Sbjct: 100 EERLKGVLNDLAKQEGNVILFIDELHTMVG 129
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNI 146
+LL G PG GKT L K A+++ + N+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 259 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 306
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 258 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 305
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 567 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 614
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 263 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 310
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 98 IVLPSIIPAYFDKLRRPWK-GV---LLVGPPGTGKTMLAKAAATE-----TKSNFFNITS 148
I +PS YF LRR K G+ L+V P K+ML AA T+S F ++
Sbjct: 680 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTP---KSMLRNKAAVSDIRDFTESKFRSVLE 736
Query: 149 STLTSKWYGDSEKLIRLLFLLAK 171
+ + GD K+ RLL K
Sbjct: 737 EPMYTDGEGDRNKVTRLLLTSGK 759
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 258 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 305
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNI 146
+LL G PG GKT L K A+++ + N+
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 98 IVLPSIIPAYFDKLRRPWK-GV---LLVGPPGTGKTMLAKAAATE-----TKSNFFNITS 148
I +PS YF LRR K G+ L+V P K+ML AA T+S F ++
Sbjct: 925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTP---KSMLRNKAAVSDIRDFTESKFRSVLE 981
Query: 149 STLTSKWYGDSEKLIRLLFLLAK 171
+ + GD K+ RLL K
Sbjct: 982 EPMYTDGEGDRNKVTRLLLTSGK 1004
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 198 RRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEK 245
R + ++C M G+ V N D +++ A + P + E F+R L K
Sbjct: 322 RHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIK 369
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156
K +L +GP G GKT +A+ A + F + ++ T Y
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|4GGI|A Chain A, Structure Of Lpxi D225a Mutant
Length = 283
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 234 DLDEAFRRRLEKRIYV----PIPDQATRVSLLTIFLQNV 268
DL EA R R E+R+ V P P Q TRV+L TI + +
Sbjct: 199 DLPEAIRGRAERRLGVLAKAPKPIQETRVALPTIGVATI 237
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 PSIIPAYFDKLRRPWKGVLLVGPPGTGKTM-LAKAAATETKSNFFNITSSTLTSKWYGD 158
P I D LRR K L+G GTGKT ++ A K + TL + Y +
Sbjct: 18 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSE 76
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 PSIIPAYFDKLRRPWKGVLLVGPPGTGKTM-LAKAAATETKSNFFNITSSTLTSKWYGD 158
P I D LRR K L+G GTGKT ++ A K + TL + Y +
Sbjct: 18 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSE 76
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 PSIIPAYFDKLRRPWKGVLLVGPPGTGKTM-LAKAAATETKSNFFNITSSTLTSKWYGD 158
P I D LRR K L+G GTGKT ++ A K + TL + Y +
Sbjct: 18 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSE 76
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 PSIIPAYFDKLRRPWKGVLLVGPPGTGKTM-LAKAAATETKSNFFNITSSTLTSKWYGD 158
P I D LRR K L+G GTGKT ++ A K + TL + Y +
Sbjct: 18 PQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSE 76
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150
++L GPPGTGKT LA+ A ++ I++ T
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVT 85
>pdb|4GGM|X Chain X, Structure Of Lpxi
Length = 283
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 234 DLDEAFRRRLEKRIYV----PIPDQATRVSLLTIFLQNV 268
DL EA R R E+R+ V P P Q TRV L TI + +
Sbjct: 199 DLPEAIRGRAERRLGVLAKAPKPIQETRVDLPTIGVATI 237
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154
++ +L GPPG GKT A A E + +S + SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 119 LLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRL 165
LL G PG+GKT L A ET+ N I + T + + + ++L++L
Sbjct: 37 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPNFDELVKL 82
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 115 WKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTSKWYGDSEKLI----RLLFL 168
+ VL+ G PGTGKT +A A + F I S + S +E L R + +
Sbjct: 85 GRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGV 144
Query: 169 LAKELAPSIVF---FDEIDSMCS 188
KE P +V EID + S
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINS 167
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFF-------NITSSTLTSKWYGDSEKLIR 164
RR +L+G PG GKT +A+ A + +N + + + +K+ G+ E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 165 LLFLLAKELAPSIVFFD 181
+ ++ I+F D
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 100 LPSIIPAYFD-KLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF-FNITSSTLT 152
+P+ YF + RP +++ GP GTGK+ L K E +F F++ S+T T
Sbjct: 4 IPTTENLYFQGSMSRP---IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRT 55
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 118 VLLVGPPGTGKTMLAKAAATE 138
+L+ G PGTGKT +A+ A E
Sbjct: 13 ILITGTPGTGKTSMAEMIAAE 33
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 127 GKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLI 163
G+TM A +AT T NFF + +++ SE++I
Sbjct: 382 GRTMGAYTSATATDFNFFKRAQTIALNEFVASSERMI 418
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNF-FNITSSTLT 152
+++ GP GTGK+ L K E +F F+++S+T T
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 40
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNF-FNITSSTLT 152
+++ GP GTGK+ L K E +F F+++S+T T
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39
>pdb|4FD4|A Chain A, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
pdb|4FD4|B Chain B, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
Length = 217
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 66 RNILSEVLKAETNVKWADIAG----LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLV 121
R IL + E + + + G LDD + L + V + D + + GV +
Sbjct: 21 REILHRIYYPEEGITISYVHGKSHTLDDERFSL--SFVEQGTVVVAEDSAAKKFIGVSIA 78
Query: 122 GP--PGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLL 166
GP PG M+ +AA TETK KW GD KL+ LL
Sbjct: 79 GPIQPGDPDAMVEEAATTETK-------------KW-GDILKLLALL 111
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSN 142
V L GPPG GKT L A+ KS+
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSS 28
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAATET------------KSNFFNITSSTLTSKWYGDS 159
RR +L+G PG GKT + + A + K +++S +K+ GD
Sbjct: 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF 99
Query: 160 EKLIRLLFLLAKELAPSIVFF-DEIDSMCS 188
E+ ++ + ++ +V F DEI ++
Sbjct: 100 EERLKSILKEVQDAEGQVVMFIDEIHTVVG 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,443,649
Number of Sequences: 62578
Number of extensions: 398128
Number of successful extensions: 1292
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 112
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)