Query psy6716
Match_columns 371
No_of_seqs 318 out of 3385
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 16:36:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 2E-56 4.3E-61 398.8 27.6 299 58-371 188-488 (491)
2 KOG0730|consensus 100.0 1.7E-55 3.7E-60 417.3 26.5 309 14-371 381-693 (693)
3 KOG0733|consensus 100.0 2.2E-52 4.8E-57 391.0 28.5 283 69-369 498-786 (802)
4 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-51 3.4E-56 365.3 23.6 246 73-354 142-394 (406)
5 KOG0736|consensus 100.0 6.6E-49 1.4E-53 376.1 26.2 280 75-371 665-951 (953)
6 KOG0739|consensus 100.0 6.9E-48 1.5E-52 333.3 19.8 295 60-371 111-435 (439)
7 KOG0733|consensus 100.0 6.1E-45 1.3E-49 341.1 24.5 232 76-323 184-419 (802)
8 TIGR01243 CDC48 AAA family ATP 100.0 4E-43 8.7E-48 358.4 31.0 330 14-371 376-729 (733)
9 KOG0737|consensus 100.0 1.8E-43 3.9E-48 315.8 24.0 279 74-369 84-378 (386)
10 KOG0740|consensus 100.0 4.1E-42 8.9E-47 318.0 19.2 289 63-371 134-423 (428)
11 KOG0734|consensus 100.0 5.8E-42 1.3E-46 316.6 20.1 238 78-352 300-541 (752)
12 KOG0727|consensus 100.0 2.4E-41 5.2E-46 286.7 19.5 245 74-354 147-398 (408)
13 COG0464 SpoVK ATPases of the A 100.0 1.2E-40 2.7E-45 327.2 27.2 305 13-367 179-492 (494)
14 COG1223 Predicted ATPase (AAA+ 100.0 8.4E-41 1.8E-45 284.3 20.0 240 77-355 116-358 (368)
15 KOG0735|consensus 100.0 4.7E-40 1E-44 312.7 24.4 283 14-324 604-894 (952)
16 KOG0652|consensus 100.0 1.7E-40 3.7E-45 282.7 17.7 245 73-353 162-413 (424)
17 PTZ00454 26S protease regulato 100.0 3.5E-39 7.6E-44 304.1 25.0 246 74-355 137-389 (398)
18 KOG0728|consensus 100.0 1.8E-39 4E-44 274.9 20.2 257 75-367 140-403 (404)
19 KOG0726|consensus 100.0 3.8E-40 8.3E-45 284.5 14.7 242 75-352 178-426 (440)
20 CHL00195 ycf46 Ycf46; Provisio 100.0 2.4E-38 5.2E-43 304.4 27.4 254 77-370 223-483 (489)
21 PRK03992 proteasome-activating 100.0 3.8E-38 8.3E-43 298.7 24.6 250 74-359 123-379 (389)
22 KOG0731|consensus 100.0 2.5E-38 5.5E-43 309.2 22.9 241 77-353 306-554 (774)
23 KOG0729|consensus 100.0 2.3E-38 5E-43 270.5 16.6 244 73-352 168-418 (435)
24 PTZ00361 26 proteosome regulat 100.0 3.8E-37 8.2E-42 291.9 23.8 244 74-353 175-425 (438)
25 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-35 4.2E-40 289.5 23.9 242 75-353 48-296 (495)
26 COG0465 HflB ATP-dependent Zn 100.0 1.3E-35 2.7E-40 285.8 20.8 240 76-352 144-390 (596)
27 TIGR01242 26Sp45 26S proteasom 100.0 6.1E-35 1.3E-39 275.8 24.6 243 74-352 114-363 (364)
28 CHL00176 ftsH cell division pr 100.0 2.7E-34 5.9E-39 284.5 24.1 239 77-352 178-423 (638)
29 TIGR03689 pup_AAA proteasome A 100.0 7.1E-33 1.5E-37 266.0 25.4 258 72-352 172-478 (512)
30 KOG0730|consensus 100.0 1.8E-33 4E-38 267.6 20.5 221 78-318 181-404 (693)
31 KOG0651|consensus 100.0 7.5E-34 1.6E-38 247.7 12.5 251 68-354 117-375 (388)
32 TIGR01243 CDC48 AAA family ATP 100.0 8.2E-32 1.8E-36 275.4 26.9 262 77-357 173-440 (733)
33 KOG0732|consensus 100.0 2.4E-32 5.3E-37 273.9 19.1 264 76-358 259-531 (1080)
34 KOG0741|consensus 100.0 1.6E-32 3.4E-37 254.1 15.9 273 76-365 213-505 (744)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.7E-32 1E-36 282.5 21.2 204 113-353 1628-1878(2281)
36 PRK10733 hflB ATP-dependent me 100.0 1.4E-31 3.1E-36 268.1 23.8 241 78-355 148-395 (644)
37 PLN00020 ribulose bisphosphate 100.0 5.9E-29 1.3E-33 225.1 19.7 170 113-298 146-330 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 1.4E-23 3E-28 190.7 20.3 216 82-322 23-261 (287)
39 COG2204 AtoC Response regulato 99.9 3.2E-25 7E-30 208.9 7.3 259 13-321 82-365 (464)
40 TIGR02880 cbbX_cfxQ probable R 99.9 2.9E-23 6.3E-28 188.8 19.9 215 83-322 23-260 (284)
41 TIGR02881 spore_V_K stage V sp 99.9 1.2E-22 2.6E-27 183.4 20.9 217 81-322 5-245 (261)
42 KOG0742|consensus 99.9 2.3E-22 4.9E-27 181.9 19.5 227 77-316 350-593 (630)
43 KOG0736|consensus 99.9 2.3E-22 4.9E-27 194.3 17.8 221 116-356 432-657 (953)
44 PF05496 RuvB_N: Holliday junc 99.9 2.4E-22 5.1E-27 171.3 15.5 196 77-310 19-224 (233)
45 KOG0744|consensus 99.9 7.4E-23 1.6E-27 180.0 10.8 248 80-352 140-414 (423)
46 KOG0735|consensus 99.9 1.2E-21 2.7E-26 187.7 18.5 211 115-355 431-651 (952)
47 PF00004 AAA: ATPase family as 99.9 1.4E-21 3E-26 157.9 13.7 129 118-251 1-132 (132)
48 PRK00080 ruvB Holliday junctio 99.9 1.2E-19 2.6E-24 169.4 24.4 220 79-353 22-251 (328)
49 TIGR00635 ruvB Holliday juncti 99.9 7.1E-20 1.5E-24 169.5 21.4 199 80-316 2-210 (305)
50 COG2255 RuvB Holliday junction 99.8 1.5E-19 3.2E-24 157.1 20.3 201 78-316 22-232 (332)
51 TIGR02902 spore_lonB ATP-depen 99.8 1.2E-19 2.6E-24 178.5 16.5 222 77-352 60-332 (531)
52 COG3829 RocR Transcriptional r 99.8 1E-20 2.2E-25 178.3 6.8 202 76-319 239-468 (560)
53 PRK14956 DNA polymerase III su 99.8 2.6E-18 5.7E-23 163.4 21.9 186 78-312 14-227 (484)
54 TIGR02639 ClpA ATP-dependent C 99.8 1.4E-18 3E-23 177.8 21.3 245 77-366 177-447 (731)
55 COG2256 MGS1 ATPase related to 99.8 1.5E-18 3.2E-23 157.9 19.0 182 78-310 20-212 (436)
56 PRK12323 DNA polymerase III su 99.8 2.1E-18 4.5E-23 168.0 20.1 186 78-312 12-230 (700)
57 PRK07003 DNA polymerase III su 99.8 4.4E-18 9.5E-23 167.7 21.9 186 78-312 12-225 (830)
58 PRK14962 DNA polymerase III su 99.8 5.7E-18 1.2E-22 163.5 21.3 184 78-310 10-221 (472)
59 TIGR00763 lon ATP-dependent pr 99.8 3.9E-18 8.6E-23 175.3 20.7 217 83-320 321-559 (775)
60 KOG0743|consensus 99.8 1.9E-18 4.1E-23 159.7 16.2 203 79-308 198-413 (457)
61 PRK14960 DNA polymerase III su 99.8 9.6E-18 2.1E-22 163.7 20.1 186 78-312 11-224 (702)
62 KOG2004|consensus 99.8 2.2E-18 4.8E-23 165.8 13.8 172 82-267 411-598 (906)
63 PRK14961 DNA polymerase III su 99.8 1.6E-17 3.4E-22 156.8 19.5 186 78-312 12-225 (363)
64 PRK07994 DNA polymerase III su 99.8 4.5E-17 9.7E-22 161.1 23.4 186 78-312 12-225 (647)
65 COG0466 Lon ATP-dependent Lon 99.8 1E-17 2.3E-22 162.0 18.4 170 82-266 323-509 (782)
66 PRK14958 DNA polymerase III su 99.8 9.9E-18 2.2E-22 163.5 18.5 186 78-312 12-225 (509)
67 PRK14949 DNA polymerase III su 99.8 5E-17 1.1E-21 163.2 23.2 192 78-312 12-225 (944)
68 PRK00149 dnaA chromosomal repl 99.8 4.2E-17 9.2E-22 158.4 21.4 220 77-352 117-349 (450)
69 COG3604 FhlA Transcriptional r 99.8 6.3E-19 1.4E-23 164.1 8.0 208 78-315 219-456 (550)
70 TIGR00362 DnaA chromosomal rep 99.8 8.2E-17 1.8E-21 154.6 22.2 173 115-316 136-319 (405)
71 PRK14964 DNA polymerase III su 99.8 3.1E-17 6.7E-22 157.8 19.2 187 78-313 9-223 (491)
72 PRK11034 clpA ATP-dependent Cl 99.8 5.5E-17 1.2E-21 164.2 22.0 240 70-354 174-435 (758)
73 KOG0989|consensus 99.8 8.7E-17 1.9E-21 141.3 19.8 186 78-310 32-233 (346)
74 PRK06645 DNA polymerase III su 99.8 5E-17 1.1E-21 157.6 20.1 187 78-313 17-235 (507)
75 PRK04195 replication factor C 99.8 4.9E-17 1.1E-21 159.1 19.6 188 78-312 10-204 (482)
76 PRK12402 replication factor C 99.8 1.5E-16 3.3E-21 149.4 21.4 184 79-306 12-225 (337)
77 PRK08691 DNA polymerase III su 99.8 5.3E-17 1.2E-21 159.9 18.8 187 78-313 12-226 (709)
78 PLN03025 replication factor C 99.7 7.6E-17 1.6E-21 149.8 18.5 182 78-309 9-202 (319)
79 PRK13342 recombination factor 99.7 1.3E-16 2.9E-21 153.2 20.2 184 79-312 9-201 (413)
80 PRK14957 DNA polymerase III su 99.7 1.8E-16 3.9E-21 154.6 20.9 186 78-312 12-225 (546)
81 PRK14963 DNA polymerase III su 99.7 2.2E-16 4.8E-21 153.7 21.5 185 78-311 10-221 (504)
82 PRK14951 DNA polymerase III su 99.7 1.3E-16 2.8E-21 157.6 19.2 186 78-312 12-230 (618)
83 PRK14086 dnaA chromosomal repl 99.7 3.9E-16 8.4E-21 152.5 21.4 171 116-315 315-496 (617)
84 PRK14952 DNA polymerase III su 99.7 2.3E-16 5E-21 155.2 19.9 186 78-312 9-224 (584)
85 PRK14969 DNA polymerase III su 99.7 1.3E-16 2.9E-21 156.6 18.2 186 79-313 13-226 (527)
86 PRK14088 dnaA chromosomal repl 99.7 3.7E-16 7.9E-21 150.6 20.7 173 116-315 131-313 (440)
87 PRK05563 DNA polymerase III su 99.7 4.2E-16 9.1E-21 154.1 21.6 186 78-312 12-225 (559)
88 PRK05342 clpX ATP-dependent pr 99.7 3.6E-16 7.8E-21 148.4 20.0 234 84-320 73-383 (412)
89 PRK06893 DNA replication initi 99.7 5.3E-16 1.2E-20 137.2 19.6 191 76-312 10-208 (229)
90 PRK14959 DNA polymerase III su 99.7 2.9E-16 6.3E-21 154.1 19.6 184 78-310 12-223 (624)
91 PRK08903 DnaA regulatory inact 99.7 6E-16 1.3E-20 137.0 19.9 202 77-350 13-224 (227)
92 TIGR03420 DnaA_homol_Hda DnaA 99.7 3.8E-16 8.3E-21 138.2 18.3 191 78-317 11-211 (226)
93 PRK07133 DNA polymerase III su 99.7 1.3E-15 2.7E-20 151.7 23.6 193 77-312 13-224 (725)
94 TIGR03345 VI_ClpV1 type VI sec 99.7 5.7E-16 1.2E-20 159.8 21.5 212 68-312 173-407 (852)
95 PRK07764 DNA polymerase III su 99.7 4.2E-16 9.2E-21 159.0 19.7 186 78-312 11-226 (824)
96 TIGR02974 phageshock_pspF psp 99.7 6.7E-17 1.4E-21 150.0 12.7 205 84-313 1-231 (329)
97 PHA02544 44 clamp loader, smal 99.7 1.2E-15 2.6E-20 142.0 21.2 156 79-266 18-174 (316)
98 PRK07940 DNA polymerase III su 99.7 3.8E-16 8.3E-21 147.5 17.5 186 80-308 3-215 (394)
99 TIGR02928 orc1/cdc6 family rep 99.7 9.4E-16 2E-20 145.6 20.4 227 79-353 12-275 (365)
100 COG0464 SpoVK ATPases of the A 99.7 1.3E-15 2.9E-20 150.0 21.8 223 101-355 3-229 (494)
101 PRK08084 DNA replication initi 99.7 2.6E-15 5.7E-20 133.2 21.5 208 76-350 16-234 (235)
102 PRK05896 DNA polymerase III su 99.7 6.4E-16 1.4E-20 150.9 18.9 185 78-311 12-224 (605)
103 TIGR02397 dnaX_nterm DNA polym 99.7 6.9E-16 1.5E-20 146.0 18.6 187 77-312 9-223 (355)
104 PRK08451 DNA polymerase III su 99.7 1E-15 2.2E-20 148.6 19.5 188 78-314 10-225 (535)
105 PRK14965 DNA polymerase III su 99.7 7.5E-16 1.6E-20 153.0 18.8 185 78-311 12-224 (576)
106 PRK13341 recombination factor 99.7 1E-15 2.2E-20 154.5 19.6 189 78-312 24-222 (725)
107 PRK10787 DNA-binding ATP-depen 99.7 5.5E-16 1.2E-20 158.2 17.9 242 82-351 322-581 (784)
108 PRK12422 chromosomal replicati 99.7 3.7E-15 8E-20 143.3 22.6 239 76-364 105-360 (445)
109 PRK14953 DNA polymerase III su 99.7 1.5E-15 3.2E-20 147.5 19.8 192 78-312 12-225 (486)
110 PRK15424 propionate catabolism 99.7 2.1E-16 4.6E-21 154.2 13.9 204 79-313 216-463 (538)
111 TIGR02329 propionate_PrpR prop 99.7 2.1E-16 4.5E-21 154.5 13.5 166 78-267 208-403 (526)
112 PRK10865 protein disaggregatio 99.7 6.9E-16 1.5E-20 159.6 18.0 169 77-270 173-359 (857)
113 PRK06647 DNA polymerase III su 99.7 1.6E-15 3.5E-20 149.5 19.7 192 78-312 12-225 (563)
114 PF00308 Bac_DnaA: Bacterial d 99.7 2.6E-15 5.6E-20 131.6 18.8 198 77-312 3-213 (219)
115 PF05673 DUF815: Protein of un 99.7 3.8E-15 8.2E-20 129.0 19.4 193 76-310 21-244 (249)
116 TIGR00382 clpX endopeptidase C 99.7 2E-15 4.3E-20 142.5 19.1 233 84-319 79-388 (413)
117 PRK00411 cdc6 cell division co 99.7 3.8E-15 8.1E-20 142.9 21.2 228 79-354 27-284 (394)
118 CHL00095 clpC Clp protease ATP 99.7 1E-15 2.2E-20 158.6 18.3 213 67-312 164-398 (821)
119 PRK11608 pspF phage shock prot 99.7 2.9E-16 6.2E-21 145.9 13.0 204 81-313 5-238 (326)
120 PRK09111 DNA polymerase III su 99.7 2.6E-15 5.7E-20 148.6 20.1 191 79-312 21-238 (598)
121 PRK06305 DNA polymerase III su 99.7 1.1E-14 2.3E-19 140.7 23.8 185 78-311 13-226 (451)
122 TIGR03346 chaperone_ClpB ATP-d 99.7 2.4E-15 5.2E-20 156.2 20.6 203 77-312 168-393 (852)
123 TIGR00390 hslU ATP-dependent p 99.7 1.5E-15 3.2E-20 141.5 16.9 253 84-352 14-430 (441)
124 TIGR02640 gas_vesic_GvpN gas v 99.7 3.7E-15 8E-20 134.5 19.1 139 115-265 21-198 (262)
125 PRK14087 dnaA chromosomal repl 99.7 6.1E-15 1.3E-19 142.3 21.8 208 114-364 140-364 (450)
126 KOG2028|consensus 99.7 1.8E-15 4E-20 135.7 16.7 194 116-352 163-368 (554)
127 PRK05022 anaerobic nitric oxid 99.7 6E-16 1.3E-20 152.4 14.9 207 80-315 185-420 (509)
128 COG2812 DnaX DNA polymerase II 99.7 1.9E-15 4.1E-20 145.0 17.8 194 78-314 12-227 (515)
129 PRK08727 hypothetical protein; 99.7 1.3E-14 2.9E-19 128.6 21.8 207 77-351 14-230 (233)
130 TIGR02903 spore_lon_C ATP-depe 99.7 7.9E-15 1.7E-19 146.6 22.5 230 77-353 149-431 (615)
131 PRK14970 DNA polymerase III su 99.7 4.7E-15 1E-19 140.8 19.9 191 78-312 13-214 (367)
132 PRK11034 clpA ATP-dependent Cl 99.7 1.2E-15 2.6E-20 154.5 16.8 222 83-320 459-720 (758)
133 TIGR02915 PEP_resp_reg putativ 99.7 1.5E-16 3.2E-21 155.1 9.9 262 17-313 83-370 (445)
134 PRK00440 rfc replication facto 99.7 4.9E-15 1.1E-19 138.1 19.3 183 79-311 14-207 (319)
135 PRK14955 DNA polymerase III su 99.7 5.9E-15 1.3E-19 141.0 19.8 192 78-312 12-233 (397)
136 PRK06620 hypothetical protein; 99.7 1.3E-14 2.8E-19 126.5 19.9 175 76-311 10-193 (214)
137 PRK14948 DNA polymerase III su 99.7 2.5E-14 5.5E-19 142.5 23.5 190 78-310 12-225 (620)
138 TIGR02639 ClpA ATP-dependent C 99.7 3.2E-15 7E-20 153.1 17.6 221 82-320 454-716 (731)
139 PRK05642 DNA replication initi 99.7 1.9E-14 4.1E-19 127.6 20.3 167 114-317 44-218 (234)
140 PRK10820 DNA-binding transcrip 99.7 7.6E-16 1.7E-20 151.7 12.3 208 77-313 199-435 (520)
141 PTZ00112 origin recognition co 99.7 7.5E-15 1.6E-19 145.9 19.1 221 81-356 754-1010(1164)
142 COG0593 DnaA ATPase involved i 99.6 2.2E-14 4.8E-19 133.9 21.1 204 113-363 111-327 (408)
143 COG1221 PspF Transcriptional r 99.6 3.2E-16 6.9E-21 145.8 8.6 209 77-316 73-310 (403)
144 PRK14954 DNA polymerase III su 99.6 4.4E-14 9.6E-19 140.1 23.6 190 78-310 12-231 (620)
145 PRK05201 hslU ATP-dependent pr 99.6 4.6E-15 9.9E-20 138.3 15.0 179 83-261 16-344 (443)
146 PF00158 Sigma54_activat: Sigm 99.6 4.2E-15 9.1E-20 124.4 13.1 126 84-232 1-144 (168)
147 PRK13407 bchI magnesium chelat 99.6 8.4E-15 1.8E-19 135.1 15.4 166 77-265 3-216 (334)
148 TIGR01817 nifA Nif-specific re 99.6 1.1E-15 2.5E-20 151.7 10.4 206 78-313 192-426 (534)
149 KOG0741|consensus 99.6 5.3E-15 1.1E-19 138.4 13.5 231 14-263 435-684 (744)
150 PRK15429 formate hydrogenlyase 99.6 6.9E-15 1.5E-19 150.1 15.6 207 79-314 373-608 (686)
151 PRK14950 DNA polymerase III su 99.6 3.3E-14 7.1E-19 142.0 19.5 186 77-311 11-225 (585)
152 PRK11388 DNA-binding transcrip 99.6 8.7E-15 1.9E-19 148.5 14.7 206 78-313 321-552 (638)
153 PRK09087 hypothetical protein; 99.6 7.5E-14 1.6E-18 122.8 18.4 174 115-352 44-222 (226)
154 CHL00081 chlI Mg-protoporyphyr 99.6 3.8E-14 8.2E-19 131.1 17.1 167 77-265 12-232 (350)
155 PRK14971 DNA polymerase III su 99.6 2.1E-13 4.4E-18 136.1 22.3 185 78-311 13-226 (614)
156 PRK10923 glnG nitrogen regulat 99.6 5.4E-15 1.2E-19 145.0 10.7 254 19-313 87-369 (469)
157 PRK11361 acetoacetate metaboli 99.6 1.6E-14 3.4E-19 141.4 13.3 259 18-313 87-374 (457)
158 COG1224 TIP49 DNA helicase TIP 99.6 3.8E-13 8.1E-18 120.7 20.0 144 175-369 292-447 (450)
159 TIGR02030 BchI-ChlI magnesium 99.6 1.5E-13 3.2E-18 127.2 17.9 161 80-265 2-219 (337)
160 COG2607 Predicted ATPase (AAA+ 99.6 2.7E-13 5.9E-18 115.5 17.7 197 77-311 55-277 (287)
161 COG0542 clpA ATP-binding subun 99.6 1.6E-14 3.6E-19 143.7 12.0 220 83-320 492-759 (786)
162 TIGR02442 Cob-chelat-sub cobal 99.6 5.4E-14 1.2E-18 141.6 15.1 164 80-265 2-214 (633)
163 COG3283 TyrR Transcriptional r 99.6 1.7E-14 3.7E-19 129.3 10.1 160 77-260 199-378 (511)
164 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-13 2.9E-18 143.3 18.4 222 82-321 565-831 (852)
165 PHA02244 ATPase-like protein 99.5 3.8E-13 8.2E-18 123.7 17.8 131 115-257 119-266 (383)
166 cd00009 AAA The AAA+ (ATPases 99.5 1.9E-13 4.1E-18 111.8 14.3 141 86-250 2-150 (151)
167 TIGR03345 VI_ClpV1 type VI sec 99.5 2.1E-13 4.5E-18 141.0 17.8 220 83-320 567-835 (852)
168 PRK05564 DNA polymerase III su 99.5 5.4E-13 1.2E-17 123.8 18.7 152 80-265 2-165 (313)
169 PRK09112 DNA polymerase III su 99.5 2.1E-12 4.6E-17 120.5 21.5 190 78-312 19-245 (351)
170 PRK10865 protein disaggregatio 99.5 7.5E-13 1.6E-17 137.3 20.3 221 82-320 568-833 (857)
171 PRK07471 DNA polymerase III su 99.5 1.7E-12 3.8E-17 121.8 20.4 185 78-309 15-240 (365)
172 TIGR01650 PD_CobS cobaltochela 99.5 2.1E-13 4.6E-18 124.1 13.5 141 115-266 64-234 (327)
173 CHL00095 clpC Clp protease ATP 99.5 5.3E-13 1.1E-17 138.4 18.0 222 82-321 509-787 (821)
174 PRK15115 response regulator Gl 99.5 2.8E-13 6E-18 132.1 15.0 244 19-312 89-364 (444)
175 TIGR01818 ntrC nitrogen regula 99.5 5.7E-14 1.2E-18 137.6 9.2 258 19-313 82-365 (463)
176 COG1474 CDC6 Cdc6-related prot 99.5 3.2E-12 7E-17 119.8 20.4 229 82-361 17-274 (366)
177 TIGR00368 Mg chelatase-related 99.5 9.1E-13 2E-17 128.1 17.2 150 79-255 189-394 (499)
178 KOG2035|consensus 99.5 5.9E-13 1.3E-17 115.6 13.5 176 80-298 11-220 (351)
179 smart00350 MCM minichromosome 99.5 4.2E-13 9.1E-18 132.0 13.8 169 83-266 204-401 (509)
180 PRK13531 regulatory ATPase Rav 99.5 1.7E-12 3.6E-17 123.7 16.9 158 83-264 21-193 (498)
181 PF01078 Mg_chelatase: Magnesi 99.5 1.9E-14 4.2E-19 122.2 3.1 148 81-255 2-205 (206)
182 KOG0991|consensus 99.5 8.3E-13 1.8E-17 112.0 12.7 158 80-271 25-191 (333)
183 PRK07399 DNA polymerase III su 99.5 3.6E-12 7.8E-17 117.4 17.9 183 80-309 2-223 (314)
184 COG0714 MoxR-like ATPases [Gen 99.4 7.6E-13 1.6E-17 123.6 11.7 159 84-266 26-204 (329)
185 PRK10365 transcriptional regul 99.4 5.1E-13 1.1E-17 130.1 10.8 210 19-262 89-320 (441)
186 PRK05707 DNA polymerase III su 99.4 5.7E-12 1.2E-16 116.7 16.7 131 112-264 19-177 (328)
187 PF14532 Sigma54_activ_2: Sigm 99.4 2.2E-13 4.8E-18 110.8 6.4 125 85-250 1-136 (138)
188 PF06068 TIP49: TIP49 C-termin 99.4 1.3E-11 2.8E-16 112.7 18.2 76 175-270 279-366 (398)
189 PF07728 AAA_5: AAA domain (dy 99.4 4.4E-13 9.5E-18 109.3 8.0 115 117-243 1-139 (139)
190 TIGR00678 holB DNA polymerase 99.4 4.5E-12 9.7E-17 108.8 14.6 144 113-298 12-183 (188)
191 TIGR02031 BchD-ChlD magnesium 99.4 2.8E-12 6.1E-17 127.8 14.1 141 116-266 17-175 (589)
192 PRK04132 replication factor C 99.4 7.2E-12 1.6E-16 127.5 16.9 160 114-311 563-735 (846)
193 PRK08058 DNA polymerase III su 99.4 1.4E-11 3E-16 114.8 17.0 148 80-262 3-179 (329)
194 COG0470 HolB ATPase involved i 99.4 3.8E-12 8.2E-17 118.8 13.2 149 83-262 2-178 (325)
195 KOG1969|consensus 99.4 1.8E-11 3.9E-16 119.1 16.9 172 116-317 327-517 (877)
196 PRK09862 putative ATP-dependen 99.4 1.4E-11 2.9E-16 119.5 16.0 149 80-255 189-391 (506)
197 PRK11331 5-methylcytosine-spec 99.4 1.6E-11 3.4E-16 116.1 14.9 147 81-251 174-357 (459)
198 TIGR00764 lon_rel lon-related 99.4 3.2E-11 7E-16 120.5 17.5 145 175-353 218-392 (608)
199 PRK06871 DNA polymerase III su 99.3 1.1E-10 2.3E-15 107.5 18.6 144 87-264 7-178 (325)
200 PF07724 AAA_2: AAA domain (Cd 99.3 1.9E-12 4.2E-17 108.7 6.6 117 114-232 2-130 (171)
201 PF07726 AAA_3: ATPase family 99.3 5E-13 1.1E-17 104.3 2.7 114 117-243 1-129 (131)
202 TIGR03015 pepcterm_ATPase puta 99.3 3.5E-10 7.6E-15 102.7 21.8 197 116-353 44-267 (269)
203 COG0542 clpA ATP-binding subun 99.3 7.4E-11 1.6E-15 118.0 17.5 215 68-314 156-392 (786)
204 PTZ00111 DNA replication licen 99.3 9E-11 1.9E-15 119.1 18.1 170 83-266 451-658 (915)
205 COG1219 ClpX ATP-dependent pro 99.3 1.6E-11 3.5E-16 108.8 10.8 128 84-211 63-203 (408)
206 PRK07993 DNA polymerase III su 99.3 2.2E-10 4.7E-15 106.5 18.4 128 113-262 22-177 (334)
207 PF13177 DNA_pol3_delta2: DNA 99.3 5.9E-11 1.3E-15 99.1 12.4 134 86-252 1-161 (162)
208 smart00382 AAA ATPases associa 99.3 3.8E-11 8.3E-16 97.2 11.0 121 116-252 3-147 (148)
209 COG3284 AcoR Transcriptional a 99.3 1.1E-11 2.3E-16 119.7 8.5 152 85-260 316-491 (606)
210 PRK13765 ATP-dependent proteas 99.2 1.4E-10 3.1E-15 115.5 14.6 156 175-365 227-412 (637)
211 PRK06964 DNA polymerase III su 99.2 7.1E-10 1.5E-14 102.8 18.0 132 113-263 19-202 (342)
212 PRK08769 DNA polymerase III su 99.2 6.1E-10 1.3E-14 102.4 16.8 146 87-262 9-182 (319)
213 COG1220 HslU ATP-dependent pro 99.2 1.8E-10 4E-15 103.0 12.6 89 174-262 250-346 (444)
214 PRK08116 hypothetical protein; 99.2 1.8E-10 3.8E-15 104.1 12.3 123 115-254 114-251 (268)
215 COG1239 ChlI Mg-chelatase subu 99.2 2E-10 4.3E-15 106.4 12.5 168 78-267 13-234 (423)
216 KOG1942|consensus 99.2 1.3E-09 2.7E-14 95.9 16.6 93 174-298 296-401 (456)
217 PF05621 TniB: Bacterial TniB 99.2 1.7E-09 3.7E-14 97.0 17.5 184 116-319 62-273 (302)
218 COG0606 Predicted ATPase with 99.2 8.2E-12 1.8E-16 117.0 2.6 151 79-256 176-383 (490)
219 smart00763 AAA_PrkA PrkA AAA d 99.2 1E-09 2.2E-14 101.3 15.6 171 80-267 48-329 (361)
220 PRK06090 DNA polymerase III su 99.2 1E-09 2.2E-14 100.9 15.2 144 86-262 7-177 (319)
221 KOG0990|consensus 99.2 4.4E-10 9.5E-15 100.0 12.0 158 79-270 38-208 (360)
222 PRK12377 putative replication 99.1 2.9E-10 6.3E-15 100.9 9.8 140 77-243 69-222 (248)
223 KOG0745|consensus 99.1 5.2E-10 1.1E-14 103.1 11.3 137 116-252 227-386 (564)
224 TIGR00602 rad24 checkpoint pro 99.1 2.1E-09 4.6E-14 106.9 16.3 205 78-315 80-328 (637)
225 PRK08181 transposase; Validate 99.1 1.2E-09 2.6E-14 98.2 12.8 123 115-255 106-245 (269)
226 KOG1514|consensus 99.1 8.7E-09 1.9E-13 100.5 18.9 233 83-361 397-664 (767)
227 KOG2680|consensus 99.1 1.6E-08 3.5E-13 89.2 18.7 132 175-355 289-432 (454)
228 PRK08699 DNA polymerase III su 99.0 2E-09 4.4E-14 99.7 11.9 131 113-262 19-182 (325)
229 KOG1051|consensus 99.0 1.4E-09 3.1E-14 110.3 11.5 131 83-231 563-710 (898)
230 PRK06835 DNA replication prote 99.0 3.2E-09 6.9E-14 98.3 10.9 112 115-243 183-305 (329)
231 PRK06526 transposase; Provisio 99.0 1.9E-09 4.1E-14 96.4 9.0 126 115-258 98-240 (254)
232 PRK13406 bchD magnesium chelat 99.0 6.2E-09 1.4E-13 103.2 13.5 195 116-352 26-250 (584)
233 PRK07952 DNA replication prote 99.0 5.2E-09 1.1E-13 92.7 10.8 69 116-186 100-174 (244)
234 KOG2227|consensus 98.9 1.5E-07 3.3E-12 88.1 19.5 239 81-355 149-418 (529)
235 COG1241 MCM2 Predicted ATPase 98.9 3.3E-08 7.1E-13 98.4 16.0 169 83-266 287-484 (682)
236 KOG0480|consensus 98.9 5.2E-08 1.1E-12 94.0 16.4 173 81-267 344-544 (764)
237 PF01637 Arch_ATPase: Archaeal 98.9 2.1E-08 4.5E-13 88.7 11.0 186 84-305 1-232 (234)
238 PF13173 AAA_14: AAA domain 98.8 1.7E-08 3.8E-13 80.8 9.2 118 116-256 3-126 (128)
239 COG1484 DnaC DNA replication p 98.8 4.6E-08 1E-12 87.6 11.6 71 114-186 104-179 (254)
240 PF01695 IstB_IS21: IstB-like 98.8 3.1E-09 6.7E-14 90.0 3.9 100 115-232 47-150 (178)
241 PRK05917 DNA polymerase III su 98.8 8E-08 1.7E-12 86.7 12.7 118 113-252 17-154 (290)
242 PRK06921 hypothetical protein; 98.8 2.2E-08 4.8E-13 90.3 9.2 68 115-185 117-188 (266)
243 PRK09183 transposase/IS protei 98.8 5E-08 1.1E-12 87.7 11.1 101 115-232 102-206 (259)
244 COG4650 RtcR Sigma54-dependent 98.8 8.3E-09 1.8E-13 90.9 5.3 135 116-261 209-368 (531)
245 PF00493 MCM: MCM2/3/5 family 98.8 8.3E-09 1.8E-13 96.2 5.1 168 83-269 25-225 (331)
246 PRK07276 DNA polymerase III su 98.8 7E-07 1.5E-11 81.0 17.2 142 87-261 7-171 (290)
247 KOG0478|consensus 98.7 1.3E-07 2.9E-12 91.9 13.2 171 83-266 430-627 (804)
248 PF12774 AAA_6: Hydrolytic ATP 98.7 4.3E-07 9.3E-12 79.9 14.7 134 116-270 33-182 (231)
249 PRK08939 primosomal protein Dn 98.7 9.3E-08 2E-12 87.9 9.3 71 114-186 155-229 (306)
250 PF03215 Rad17: Rad17 cell cyc 98.7 8.9E-07 1.9E-11 86.8 16.3 206 80-316 17-269 (519)
251 PRK07132 DNA polymerase III su 98.6 1.2E-06 2.5E-11 80.1 15.2 127 113-263 16-160 (299)
252 PF12775 AAA_7: P-loop contain 98.6 1.1E-07 2.3E-12 86.1 8.2 141 115-267 33-195 (272)
253 PRK05818 DNA polymerase III su 98.6 4.2E-07 9.1E-12 80.4 11.6 121 113-252 5-147 (261)
254 PF13401 AAA_22: AAA domain; P 98.6 3.4E-07 7.5E-12 73.4 9.5 72 116-187 5-100 (131)
255 PF05729 NACHT: NACHT domain 98.6 1.3E-06 2.9E-11 72.8 12.9 140 117-267 2-165 (166)
256 KOG0482|consensus 98.6 4.4E-07 9.6E-12 85.5 10.4 249 83-353 343-639 (721)
257 KOG2228|consensus 98.5 6.4E-06 1.4E-10 74.4 15.1 162 83-266 25-220 (408)
258 PLN03210 Resistant to P. syrin 98.5 1.5E-05 3.3E-10 86.5 21.2 172 61-267 160-366 (1153)
259 PF00931 NB-ARC: NB-ARC domain 98.5 7.5E-06 1.6E-10 75.0 15.6 164 113-309 17-204 (287)
260 COG3267 ExeA Type II secretory 98.5 1.8E-05 3.9E-10 69.1 16.7 180 117-319 53-257 (269)
261 COG5271 MDN1 AAA ATPase contai 98.4 1.7E-06 3.7E-11 91.3 11.7 141 115-266 1543-1704(4600)
262 cd01120 RecA-like_NTPases RecA 98.4 2.1E-06 4.5E-11 71.3 9.8 72 118-189 2-100 (165)
263 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.1E-06 2.4E-11 82.5 8.0 102 113-232 60-168 (362)
264 KOG2170|consensus 98.4 3.3E-06 7.1E-11 75.1 10.2 131 84-232 84-225 (344)
265 KOG1970|consensus 98.3 4.3E-05 9.4E-10 73.3 17.9 175 116-315 111-320 (634)
266 KOG0477|consensus 98.3 1.7E-05 3.6E-10 76.9 14.9 147 83-249 450-629 (854)
267 PHA00729 NTP-binding motif con 98.3 1.5E-06 3.2E-11 75.5 6.7 25 116-140 18-42 (226)
268 PF14516 AAA_35: AAA-like doma 98.3 4.3E-05 9.3E-10 71.4 16.7 176 113-313 29-245 (331)
269 KOG1968|consensus 98.3 2.1E-06 4.6E-11 88.3 7.5 163 117-312 359-533 (871)
270 PF00910 RNA_helicase: RNA hel 98.2 2.3E-06 4.9E-11 66.2 5.4 23 118-140 1-23 (107)
271 PF09336 Vps4_C: Vps4 C termin 98.2 1.7E-06 3.6E-11 59.2 3.9 34 338-371 28-61 (62)
272 KOG0481|consensus 98.2 4.6E-05 9.9E-10 72.4 14.5 161 83-259 332-521 (729)
273 COG1618 Predicted nucleotide k 98.2 5.5E-05 1.2E-09 61.4 12.8 24 116-139 6-29 (179)
274 KOG1051|consensus 98.2 4.7E-05 1E-09 78.1 15.5 139 116-267 209-365 (898)
275 PF05707 Zot: Zonular occluden 98.2 3.3E-06 7.2E-11 72.6 5.8 122 118-251 3-145 (193)
276 TIGR02688 conserved hypothetic 98.2 3.7E-05 7.9E-10 72.6 12.9 100 114-231 208-314 (449)
277 PRK06581 DNA polymerase III su 98.2 0.00051 1.1E-08 59.9 18.9 137 114-269 14-165 (263)
278 COG1373 Predicted ATPase (AAA+ 98.1 0.00023 5.1E-09 68.1 18.6 133 117-271 39-186 (398)
279 PF06309 Torsin: Torsin; Inte 98.1 3E-05 6.6E-10 60.7 9.6 50 83-139 26-77 (127)
280 TIGR01618 phage_P_loop phage n 98.1 7E-06 1.5E-10 71.5 6.7 24 113-136 10-33 (220)
281 PRK00771 signal recognition pa 98.1 0.00015 3.3E-09 69.8 16.4 37 114-150 94-133 (437)
282 cd01124 KaiC KaiC is a circadi 98.1 2.9E-05 6.3E-10 66.2 10.3 71 118-188 2-109 (187)
283 PF13207 AAA_17: AAA domain; P 98.1 3.3E-06 7.2E-11 66.7 3.8 31 118-148 2-32 (121)
284 COG1485 Predicted ATPase [Gene 98.1 1.6E-05 3.4E-10 72.6 8.4 102 112-232 62-171 (367)
285 TIGR02237 recomb_radB DNA repa 98.0 3.2E-05 7E-10 67.4 9.8 75 114-188 11-111 (209)
286 PRK15455 PrkA family serine pr 98.0 7.3E-06 1.6E-10 79.9 5.7 62 80-147 74-136 (644)
287 PHA02624 large T antigen; Prov 98.0 4.5E-05 9.7E-10 74.9 10.9 123 115-250 431-560 (647)
288 PF03266 NTPase_1: NTPase; In 98.0 1.4E-05 3.1E-10 66.9 6.0 23 117-139 1-23 (168)
289 PRK08118 topology modulation p 98.0 1.5E-05 3.3E-10 66.8 6.2 32 117-148 3-34 (167)
290 PRK04296 thymidine kinase; Pro 98.0 8.4E-05 1.8E-09 63.7 10.7 31 117-147 4-37 (190)
291 KOG2543|consensus 98.0 0.00015 3.3E-09 66.7 12.8 157 83-265 7-193 (438)
292 PRK13949 shikimate kinase; Pro 98.0 7.1E-05 1.5E-09 62.9 10.0 31 117-147 3-33 (169)
293 PRK12723 flagellar biosynthesi 97.9 0.00029 6.3E-09 66.8 14.8 173 115-303 174-374 (388)
294 PF07693 KAP_NTPase: KAP famil 97.9 0.00081 1.7E-08 62.7 17.8 80 175-270 173-268 (325)
295 PRK10536 hypothetical protein; 97.9 0.00018 4E-09 63.7 12.2 23 116-138 75-97 (262)
296 COG5271 MDN1 AAA ATPase contai 97.9 8E-05 1.7E-09 79.4 11.0 139 116-266 889-1048(4600)
297 PRK11823 DNA repair protein Ra 97.9 5E-05 1.1E-09 73.8 9.1 77 113-189 78-171 (446)
298 TIGR02012 tigrfam_recA protein 97.9 9.2E-05 2E-09 68.2 10.4 75 115-189 55-148 (321)
299 PRK07261 topology modulation p 97.9 3.7E-05 7.9E-10 64.8 6.8 33 117-149 2-34 (171)
300 cd01121 Sms Sms (bacterial rad 97.8 7.4E-05 1.6E-09 70.6 9.0 77 113-189 80-173 (372)
301 PRK04841 transcriptional regul 97.8 0.00051 1.1E-08 73.2 16.2 152 116-300 33-219 (903)
302 PHA02774 E1; Provisional 97.8 0.00016 3.5E-09 70.8 11.1 110 116-250 435-553 (613)
303 PRK00131 aroK shikimate kinase 97.8 2E-05 4.3E-10 66.4 4.3 33 114-146 3-35 (175)
304 PRK09361 radB DNA repair and r 97.8 0.00017 3.6E-09 63.6 10.0 36 114-149 22-60 (225)
305 PRK14974 cell division protein 97.8 0.00062 1.3E-08 63.4 13.9 35 115-149 140-177 (336)
306 PF13191 AAA_16: AAA ATPase do 97.8 2.4E-05 5.2E-10 66.5 4.3 59 84-151 2-63 (185)
307 cd00983 recA RecA is a bacter 97.8 0.00021 4.5E-09 65.9 10.5 74 116-189 56-148 (325)
308 PRK05800 cobU adenosylcobinami 97.8 0.00017 3.8E-09 60.5 9.2 34 117-150 3-36 (170)
309 KOG3347|consensus 97.8 2.1E-05 4.7E-10 62.7 3.3 31 116-146 8-38 (176)
310 PRK04040 adenylate kinase; Pro 97.7 0.00069 1.5E-08 57.9 12.7 28 116-143 3-32 (188)
311 PRK08533 flagellar accessory p 97.7 0.00033 7.1E-09 62.0 11.0 74 114-187 23-130 (230)
312 PF13671 AAA_33: AAA domain; P 97.7 8.1E-05 1.8E-09 60.5 6.5 33 118-152 2-34 (143)
313 PRK10867 signal recognition pa 97.7 0.0029 6.3E-08 60.9 18.0 184 113-313 98-309 (433)
314 PF06745 KaiC: KaiC; InterPro 97.7 0.00029 6.3E-09 62.1 10.5 94 113-208 17-147 (226)
315 cd01131 PilT Pilus retraction 97.7 0.00017 3.7E-09 62.3 8.4 67 117-183 3-83 (198)
316 PRK03839 putative kinase; Prov 97.7 3.1E-05 6.8E-10 65.8 3.8 31 117-147 2-32 (180)
317 PRK13947 shikimate kinase; Pro 97.7 3.6E-05 7.9E-10 64.7 4.0 31 117-147 3-33 (171)
318 PRK00625 shikimate kinase; Pro 97.7 3.7E-05 8.1E-10 64.7 3.9 31 117-147 2-32 (173)
319 PF13604 AAA_30: AAA domain; P 97.7 0.0001 2.3E-09 63.5 6.7 98 116-231 19-132 (196)
320 cd00544 CobU Adenosylcobinamid 97.6 0.00032 6.8E-09 58.8 8.8 71 118-190 2-89 (169)
321 cd00464 SK Shikimate kinase (S 97.6 5.4E-05 1.2E-09 62.4 4.0 31 117-147 1-31 (154)
322 COG3854 SpoIIIAA ncharacterize 97.6 0.00039 8.5E-09 59.9 9.1 72 115-186 137-230 (308)
323 PRK06067 flagellar accessory p 97.6 0.0005 1.1E-08 61.0 10.3 74 114-187 24-133 (234)
324 PTZ00202 tuzin; Provisional 97.6 0.0019 4.1E-08 61.4 14.2 59 81-149 261-320 (550)
325 KOG2383|consensus 97.6 0.00032 6.9E-09 65.1 8.9 27 113-139 112-138 (467)
326 PRK06762 hypothetical protein; 97.6 0.00016 3.5E-09 60.5 6.5 37 116-152 3-39 (166)
327 PRK09354 recA recombinase A; P 97.6 0.00057 1.2E-08 63.6 10.5 73 116-188 61-152 (349)
328 PRK06217 hypothetical protein; 97.6 6.6E-05 1.4E-09 64.0 4.0 31 117-147 3-33 (183)
329 PRK14722 flhF flagellar biosyn 97.6 0.00048 1E-08 64.8 10.0 25 115-139 137-161 (374)
330 KOG0479|consensus 97.6 0.00039 8.5E-09 67.2 9.3 152 83-249 302-481 (818)
331 COG4619 ABC-type uncharacteriz 97.6 0.00057 1.2E-08 56.1 8.9 27 113-139 27-53 (223)
332 TIGR00064 ftsY signal recognit 97.6 0.0028 6E-08 57.5 14.5 36 114-149 71-109 (272)
333 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00059 1.3E-08 60.7 10.0 37 113-149 19-58 (237)
334 cd00227 CPT Chloramphenicol (C 97.6 6.2E-05 1.3E-09 63.7 3.6 35 116-150 3-37 (175)
335 PRK14532 adenylate kinase; Pro 97.6 6.6E-05 1.4E-09 64.2 3.8 35 117-153 2-36 (188)
336 TIGR02858 spore_III_AA stage I 97.6 0.00019 4E-09 64.8 6.8 25 116-140 112-136 (270)
337 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 6.8E-05 1.5E-09 63.8 3.8 33 118-152 2-34 (183)
338 TIGR01425 SRP54_euk signal rec 97.6 0.0052 1.1E-07 58.9 16.8 37 114-150 99-138 (429)
339 PRK13695 putative NTPase; Prov 97.6 0.0021 4.4E-08 54.3 12.7 23 117-139 2-24 (174)
340 COG0563 Adk Adenylate kinase a 97.6 7.7E-05 1.7E-09 63.0 3.9 34 117-152 2-35 (178)
341 PRK13948 shikimate kinase; Pro 97.5 9.5E-05 2.1E-09 62.7 4.4 35 113-147 8-42 (182)
342 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00047 1E-08 61.1 9.1 37 114-150 18-63 (235)
343 TIGR00959 ffh signal recogniti 97.5 0.0042 9.1E-08 59.8 16.0 37 114-150 98-138 (428)
344 COG0703 AroK Shikimate kinase 97.5 7.8E-05 1.7E-09 61.8 3.5 32 116-147 3-34 (172)
345 COG5245 DYN1 Dynein, heavy cha 97.5 0.00053 1.1E-08 72.9 10.1 146 113-269 1492-1662(3164)
346 cd03283 ABC_MutS-like MutS-lik 97.5 0.00063 1.4E-08 58.7 9.4 22 116-137 26-47 (199)
347 PRK11889 flhF flagellar biosyn 97.5 0.0035 7.7E-08 59.0 14.7 35 115-149 241-278 (436)
348 TIGR00416 sms DNA repair prote 97.5 0.00046 9.9E-09 67.2 9.2 77 113-189 92-185 (454)
349 cd01394 radB RadB. The archaea 97.5 0.00059 1.3E-08 59.8 9.2 35 115-149 19-56 (218)
350 cd02021 GntK Gluconate kinase 97.5 8.9E-05 1.9E-09 60.9 3.7 28 118-145 2-29 (150)
351 PRK14531 adenylate kinase; Pro 97.5 0.00011 2.3E-09 62.7 4.1 35 116-152 3-37 (183)
352 KOG3928|consensus 97.5 0.0035 7.5E-08 58.6 13.9 57 242-309 402-458 (461)
353 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.001 2.2E-08 58.1 10.1 22 116-137 30-51 (213)
354 PLN02674 adenylate kinase 97.5 0.0002 4.3E-09 63.5 5.6 37 115-153 31-67 (244)
355 cd00046 DEXDc DEAD-like helica 97.5 0.00077 1.7E-08 53.7 8.7 23 117-139 2-24 (144)
356 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00083 1.8E-08 60.7 9.7 93 80-185 58-160 (264)
357 PRK05973 replicative DNA helic 97.5 0.00093 2E-08 59.0 9.7 37 113-149 62-101 (237)
358 PRK14530 adenylate kinase; Pro 97.5 0.00012 2.6E-09 64.1 4.1 30 116-145 4-33 (215)
359 PF01745 IPT: Isopentenyl tran 97.5 0.00053 1.1E-08 58.6 7.7 134 118-270 4-144 (233)
360 PF04665 Pox_A32: Poxvirus A32 97.5 0.0034 7.5E-08 55.3 13.1 131 115-264 13-169 (241)
361 PRK09376 rho transcription ter 97.5 0.00038 8.2E-09 65.3 7.5 25 116-140 170-194 (416)
362 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0026 5.7E-08 52.5 11.6 114 118-249 5-152 (159)
363 cd02027 APSK Adenosine 5'-phos 97.5 0.0005 1.1E-08 56.5 7.4 34 118-151 2-38 (149)
364 cd01428 ADK Adenylate kinase ( 97.5 0.00011 2.4E-09 63.0 3.8 33 118-152 2-34 (194)
365 COG1102 Cmk Cytidylate kinase 97.5 0.00011 2.4E-09 59.6 3.4 28 118-145 3-30 (179)
366 TIGR01313 therm_gnt_kin carboh 97.4 0.0001 2.3E-09 61.4 3.4 27 118-144 1-27 (163)
367 cd02020 CMPK Cytidine monophos 97.4 0.00012 2.7E-09 59.6 3.7 30 118-147 2-31 (147)
368 PRK06547 hypothetical protein; 97.4 0.00014 3.1E-09 61.1 4.1 35 113-147 13-47 (172)
369 TIGR02782 TrbB_P P-type conjug 97.4 0.0004 8.8E-09 63.8 7.3 71 114-184 131-214 (299)
370 cd01393 recA_like RecA is a b 97.4 0.00079 1.7E-08 59.3 8.9 37 114-150 18-63 (226)
371 PRK14529 adenylate kinase; Pro 97.4 0.00022 4.8E-09 62.4 5.2 35 117-153 2-36 (223)
372 COG4178 ABC-type uncharacteriz 97.4 0.0008 1.7E-08 66.5 9.5 26 113-138 417-442 (604)
373 PTZ00088 adenylate kinase 1; P 97.4 0.00015 3.2E-09 63.9 4.0 35 116-152 7-41 (229)
374 cd01128 rho_factor Transcripti 97.4 0.00046 1E-08 61.5 7.2 26 116-141 17-42 (249)
375 PRK03731 aroL shikimate kinase 97.4 0.00018 3.8E-09 60.5 4.1 32 116-147 3-34 (171)
376 PRK10416 signal recognition pa 97.4 0.0048 1E-07 57.2 13.9 36 114-149 113-151 (318)
377 PRK05057 aroK shikimate kinase 97.4 0.00019 4.1E-09 60.5 4.1 32 116-147 5-36 (172)
378 PRK13946 shikimate kinase; Pro 97.4 0.00016 3.5E-09 61.6 3.7 32 116-147 11-42 (184)
379 TIGR02525 plasmid_TraJ plasmid 97.4 0.00091 2E-08 63.1 9.0 70 116-185 150-236 (372)
380 PRK13900 type IV secretion sys 97.4 0.00054 1.2E-08 63.8 7.4 71 114-184 159-245 (332)
381 COG4088 Predicted nucleotide k 97.4 0.001 2.3E-08 56.3 8.3 24 118-141 4-27 (261)
382 COG1936 Predicted nucleotide k 97.4 0.00013 2.9E-09 60.0 2.9 30 117-147 2-31 (180)
383 cd00984 DnaB_C DnaB helicase C 97.4 0.0013 2.8E-08 58.6 9.6 36 114-149 12-51 (242)
384 PRK14528 adenylate kinase; Pro 97.3 0.00019 4.1E-09 61.3 3.9 34 116-151 2-35 (186)
385 PF00437 T2SE: Type II/IV secr 97.3 0.00021 4.5E-09 64.9 4.3 71 115-185 127-208 (270)
386 PF13245 AAA_19: Part of AAA d 97.3 0.00034 7.5E-09 50.2 4.5 23 117-139 12-35 (76)
387 PF10236 DAP3: Mitochondrial r 97.3 0.0049 1.1E-07 57.0 13.3 91 175-270 157-282 (309)
388 PF05970 PIF1: PIF1-like helic 97.3 0.00092 2E-08 63.4 8.7 28 114-141 21-48 (364)
389 cd03243 ABC_MutS_homologs The 97.3 0.0023 5.1E-08 55.3 10.6 22 116-137 30-51 (202)
390 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0022 4.9E-08 57.8 10.7 36 114-149 35-73 (259)
391 COG0529 CysC Adenylylsulfate k 97.3 0.0012 2.5E-08 54.7 7.9 40 113-152 21-63 (197)
392 cd03216 ABC_Carb_Monos_I This 97.3 0.0012 2.6E-08 55.1 8.3 73 113-185 24-111 (163)
393 COG2805 PilT Tfp pilus assembl 97.3 0.00044 9.6E-09 61.9 5.8 83 104-186 113-210 (353)
394 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00068 1.5E-08 60.8 7.1 34 118-151 2-38 (249)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0013 2.9E-08 53.6 8.3 71 113-185 24-99 (144)
396 TIGR01351 adk adenylate kinase 97.3 0.00022 4.7E-09 62.2 3.8 33 118-152 2-34 (210)
397 COG1116 TauB ABC-type nitrate/ 97.3 0.0023 5.1E-08 56.1 10.0 26 114-139 28-53 (248)
398 TIGR02788 VirB11 P-type DNA tr 97.3 0.0016 3.4E-08 60.3 9.7 72 113-184 142-228 (308)
399 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0019 4.2E-08 54.5 9.4 70 114-185 24-100 (177)
400 PRK06696 uridine kinase; Valid 97.3 0.00063 1.4E-08 59.9 6.7 37 116-152 23-62 (223)
401 PRK02496 adk adenylate kinase; 97.3 0.00022 4.8E-09 60.8 3.7 29 117-145 3-31 (184)
402 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00025 5.5E-09 60.4 4.0 33 117-151 5-37 (188)
403 cd02019 NK Nucleoside/nucleoti 97.3 0.00043 9.3E-09 48.7 4.5 22 118-139 2-23 (69)
404 PRK14730 coaE dephospho-CoA ki 97.3 0.0012 2.6E-08 56.8 8.1 36 117-154 3-38 (195)
405 PF05272 VirE: Virulence-assoc 97.3 0.00015 3.3E-09 62.4 2.4 112 116-251 53-169 (198)
406 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0014 3.1E-08 54.2 8.2 70 114-185 24-109 (157)
407 COG2804 PulE Type II secretory 97.3 0.00073 1.6E-08 65.0 7.1 74 113-186 256-339 (500)
408 PF01583 APS_kinase: Adenylyls 97.3 0.0012 2.7E-08 54.1 7.5 39 116-154 3-44 (156)
409 TIGR03499 FlhF flagellar biosy 97.3 0.0029 6.2E-08 57.8 10.8 36 115-150 194-234 (282)
410 smart00534 MUTSac ATPase domai 97.3 0.0041 8.9E-08 53.0 11.1 19 118-136 2-20 (185)
411 cd01130 VirB11-like_ATPase Typ 97.3 0.001 2.2E-08 56.8 7.4 71 114-184 24-110 (186)
412 PRK00279 adk adenylate kinase; 97.3 0.00027 5.9E-09 61.9 3.9 34 117-152 2-35 (215)
413 PLN02200 adenylate kinase fami 97.3 0.00031 6.6E-09 62.3 4.2 37 115-153 43-79 (234)
414 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0034 7.5E-08 55.2 10.9 37 114-150 15-54 (224)
415 TIGR01420 pilT_fam pilus retra 97.2 0.00052 1.1E-08 64.5 5.9 71 114-184 121-205 (343)
416 PF13238 AAA_18: AAA domain; P 97.2 0.00024 5.3E-09 56.3 3.1 22 118-139 1-22 (129)
417 cd01122 GP4d_helicase GP4d_hel 97.2 0.0025 5.3E-08 57.9 10.0 36 113-148 28-67 (271)
418 PRK04328 hypothetical protein; 97.2 0.003 6.5E-08 56.6 10.2 35 114-148 22-59 (249)
419 PRK08154 anaerobic benzoate ca 97.2 0.0006 1.3E-08 63.1 5.9 35 113-147 131-165 (309)
420 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0007 1.5E-08 62.5 6.0 53 82-140 61-113 (358)
421 PF08303 tRNA_lig_kinase: tRNA 97.2 0.017 3.7E-07 47.5 13.3 133 121-269 5-147 (168)
422 COG1066 Sms Predicted ATP-depe 97.2 0.0034 7.4E-08 58.7 10.3 79 113-191 91-185 (456)
423 PRK14527 adenylate kinase; Pro 97.2 0.00032 7E-09 60.2 3.4 30 115-144 6-35 (191)
424 COG1126 GlnQ ABC-type polar am 97.2 0.003 6.6E-08 54.1 9.1 41 164-213 144-184 (240)
425 TIGR00150 HI0065_YjeE ATPase, 97.2 0.001 2.2E-08 53.1 5.8 30 113-142 20-49 (133)
426 PRK12724 flagellar biosynthesi 97.1 0.012 2.6E-07 56.2 13.8 34 116-149 224-261 (432)
427 PRK13764 ATPase; Provisional 97.1 0.00073 1.6E-08 67.4 6.0 72 113-185 255-335 (602)
428 smart00487 DEXDc DEAD-like hel 97.1 0.0043 9.3E-08 52.6 10.2 24 116-139 25-49 (201)
429 PRK13833 conjugal transfer pro 97.1 0.0029 6.4E-08 58.5 9.6 70 115-184 144-225 (323)
430 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0051 1.1E-07 53.1 10.6 21 116-136 29-49 (200)
431 PF00448 SRP54: SRP54-type pro 97.1 0.0061 1.3E-07 52.4 10.8 24 116-139 2-25 (196)
432 PF00406 ADK: Adenylate kinase 97.1 0.00034 7.3E-09 57.6 2.8 33 120-154 1-33 (151)
433 COG1124 DppF ABC-type dipeptid 97.1 0.004 8.8E-08 54.3 9.4 25 114-138 32-56 (252)
434 PF13481 AAA_25: AAA domain; P 97.1 0.0034 7.4E-08 53.7 9.2 74 116-189 33-156 (193)
435 PRK13894 conjugal transfer ATP 97.1 0.0016 3.5E-08 60.3 7.5 71 114-184 147-229 (319)
436 COG2909 MalT ATP-dependent tra 97.1 0.0052 1.1E-07 62.4 11.5 155 116-302 38-229 (894)
437 cd03238 ABC_UvrA The excision 97.1 0.009 2E-07 50.4 11.4 24 114-137 20-43 (176)
438 PRK08233 hypothetical protein; 97.1 0.00062 1.3E-08 57.7 4.3 33 117-149 5-38 (182)
439 TIGR01448 recD_rel helicase, p 97.1 0.0025 5.4E-08 65.8 9.4 102 116-236 339-459 (720)
440 PF12780 AAA_8: P-loop contain 97.1 0.0029 6.3E-08 57.1 8.7 90 83-184 9-99 (268)
441 PF13521 AAA_28: AAA domain; P 97.1 0.00049 1.1E-08 57.4 3.5 26 118-144 2-27 (163)
442 PRK04182 cytidylate kinase; Pr 97.1 0.00054 1.2E-08 57.9 3.8 28 118-145 3-30 (180)
443 TIGR00767 rho transcription te 97.1 0.0014 3.1E-08 61.8 6.9 26 115-140 168-193 (415)
444 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0093 2E-07 51.6 11.5 22 116-137 30-51 (204)
445 PRK01184 hypothetical protein; 97.1 0.00052 1.1E-08 58.5 3.7 28 117-145 3-30 (184)
446 TIGR02533 type_II_gspE general 97.1 0.0016 3.4E-08 64.0 7.4 69 117-185 244-322 (486)
447 TIGR02655 circ_KaiC circadian 97.1 0.0041 8.9E-08 61.3 10.4 75 114-188 262-367 (484)
448 cd01125 repA Hexameric Replica 97.1 0.016 3.5E-07 51.5 13.4 21 118-138 4-24 (239)
449 PRK13851 type IV secretion sys 97.1 0.0014 3E-08 61.3 6.7 72 113-184 160-246 (344)
450 TIGR00152 dephospho-CoA kinase 97.0 0.00078 1.7E-08 57.6 4.5 35 118-154 2-36 (188)
451 PF13086 AAA_11: AAA domain; P 97.0 0.00084 1.8E-08 59.0 4.9 22 118-139 20-41 (236)
452 TIGR02173 cyt_kin_arch cytidyl 97.0 0.00061 1.3E-08 57.1 3.8 28 118-145 3-30 (171)
453 PF06414 Zeta_toxin: Zeta toxi 97.0 0.0023 5E-08 55.2 7.4 41 114-154 14-55 (199)
454 PRK00889 adenylylsulfate kinas 97.0 0.0028 6.1E-08 53.4 7.8 36 115-150 4-42 (175)
455 PRK05703 flhF flagellar biosyn 97.0 0.011 2.5E-07 57.0 12.8 35 116-150 222-261 (424)
456 cd03115 SRP The signal recogni 97.0 0.0028 6.1E-08 53.3 7.7 33 118-150 3-38 (173)
457 PF13479 AAA_24: AAA domain 97.0 0.0017 3.6E-08 56.8 6.4 20 116-135 4-23 (213)
458 cd03227 ABC_Class2 ABC-type Cl 97.0 0.01 2.2E-07 49.4 10.9 22 116-137 22-43 (162)
459 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0035 7.5E-08 59.1 8.9 71 114-184 133-222 (358)
460 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0024 5.3E-08 66.1 8.5 71 116-186 369-451 (744)
461 PRK14526 adenylate kinase; Pro 97.0 0.0007 1.5E-08 59.0 3.8 34 117-152 2-35 (211)
462 CHL00195 ycf46 Ycf46; Provisio 97.0 0.032 7E-07 54.8 15.7 109 175-312 82-190 (489)
463 cd03247 ABCC_cytochrome_bd The 97.0 0.0051 1.1E-07 52.0 9.0 27 113-139 26-52 (178)
464 PF10443 RNA12: RNA12 protein; 97.0 0.17 3.7E-06 48.2 19.5 37 114-152 16-54 (431)
465 PLN03187 meiotic recombination 97.0 0.007 1.5E-07 56.5 10.4 35 116-150 127-170 (344)
466 cd03228 ABCC_MRP_Like The MRP 97.0 0.0058 1.2E-07 51.4 9.0 27 113-139 26-52 (171)
467 PRK10436 hypothetical protein; 96.9 0.0026 5.6E-08 61.9 7.6 72 114-185 217-298 (462)
468 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0067 1.4E-07 53.6 9.8 36 113-148 18-56 (229)
469 PRK04301 radA DNA repair and r 96.9 0.0056 1.2E-07 57.0 9.7 36 115-150 102-146 (317)
470 PLN02199 shikimate kinase 96.9 0.00091 2E-08 60.5 4.1 33 115-147 102-134 (303)
471 PRK10078 ribose 1,5-bisphospho 96.9 0.00079 1.7E-08 57.5 3.6 29 116-144 3-31 (186)
472 PF09848 DUF2075: Uncharacteri 96.9 0.0014 3E-08 61.9 5.6 23 117-139 3-25 (352)
473 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0024 5.1E-08 59.5 6.9 33 116-148 163-195 (325)
474 TIGR01613 primase_Cterm phage/ 96.9 0.0045 9.7E-08 57.3 8.7 139 87-250 54-202 (304)
475 PRK05541 adenylylsulfate kinas 96.9 0.0011 2.3E-08 56.1 4.2 27 114-140 6-32 (176)
476 PHA02530 pseT polynucleotide k 96.9 0.00084 1.8E-08 61.9 3.8 34 117-151 4-37 (300)
477 TIGR02238 recomb_DMC1 meiotic 96.9 0.0055 1.2E-07 56.7 9.2 37 114-150 95-140 (313)
478 cd01878 HflX HflX subfamily. 96.9 0.016 3.4E-07 50.1 11.6 23 116-138 42-64 (204)
479 cd03214 ABC_Iron-Siderophores_ 96.9 0.0051 1.1E-07 52.2 8.3 27 113-139 23-49 (180)
480 COG1067 LonB Predicted ATP-dep 96.9 0.018 3.9E-07 58.1 13.0 147 174-354 225-401 (647)
481 COG0467 RAD55 RecA-superfamily 96.9 0.012 2.7E-07 53.0 11.0 38 113-150 21-61 (260)
482 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0063 1.4E-07 51.2 8.5 26 114-139 25-50 (173)
483 KOG1808|consensus 96.9 0.0014 3.1E-08 71.9 5.6 134 117-261 442-595 (1856)
484 PRK13889 conjugal transfer rel 96.9 0.0036 7.9E-08 66.1 8.4 101 117-235 364-476 (988)
485 PRK09519 recA DNA recombinatio 96.8 0.0086 1.9E-07 61.5 10.7 74 115-188 60-152 (790)
486 COG1118 CysA ABC-type sulfate/ 96.8 0.013 2.7E-07 53.0 10.4 24 116-139 29-52 (345)
487 TIGR02236 recomb_radA DNA repa 96.8 0.0084 1.8E-07 55.6 9.9 36 115-150 95-139 (310)
488 PF08433 KTI12: Chromatin asso 96.8 0.0033 7.2E-08 56.8 6.9 68 118-186 4-82 (270)
489 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0092 2E-07 52.3 9.5 22 116-137 32-53 (222)
490 PRK12339 2-phosphoglycerate ki 96.8 0.0013 2.7E-08 56.7 4.0 28 116-143 4-31 (197)
491 cd03223 ABCD_peroxisomal_ALDP 96.8 0.01 2.2E-07 49.6 9.4 27 113-139 25-51 (166)
492 PF01443 Viral_helicase1: Vira 96.8 0.0011 2.5E-08 58.5 3.8 22 118-139 1-22 (234)
493 PRK12726 flagellar biosynthesi 96.8 0.02 4.4E-07 53.8 12.0 62 86-149 179-243 (407)
494 PRK05480 uridine/cytidine kina 96.8 0.0019 4.2E-08 56.2 5.1 37 115-151 6-43 (209)
495 COG2874 FlaH Predicted ATPases 96.8 0.018 3.9E-07 49.3 10.5 112 118-243 31-178 (235)
496 cd02022 DPCK Dephospho-coenzym 96.8 0.0014 3E-08 55.7 3.9 34 118-154 2-35 (179)
497 cd03246 ABCC_Protease_Secretio 96.8 0.014 2.9E-07 49.2 10.0 26 114-139 27-52 (173)
498 PF08423 Rad51: Rad51; InterP 96.8 0.0047 1E-07 55.5 7.5 98 116-213 38-175 (256)
499 PF02562 PhoH: PhoH-like prote 96.8 0.0018 4E-08 55.7 4.6 24 116-139 20-43 (205)
500 cd02028 UMPK_like Uridine mono 96.8 0.0016 3.5E-08 55.2 4.3 35 118-152 2-39 (179)
No 1
>KOG0738|consensus
Probab=100.00 E-value=2e-56 Score=398.84 Aligned_cols=299 Identities=52% Similarity=0.897 Sum_probs=280.5
Q ss_pred ChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHH
Q psy6716 58 DPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..++..+.+.+.++++...+++.|+||.|+.++|+-|.+++.+|+..|+.|+.+..|.++||++||||||||+||+|+|.
T Consensus 188 ~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 188 LGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred ccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 34556788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh--hhhhhhHHHHHHHhhcccccC
Q psy6716 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST--DVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 138 ~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~ 215 (371)
+++..|+.|+.+.+.++|-|++++.++.+|..|+.++|++|||||||.|+..+.+.. +.++++.++||.+||++....
T Consensus 268 Ec~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~ 347 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL 347 (491)
T ss_pred hhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999988765 788999999999999987643
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
. ..+-|+|+|+||.||+||++++|||.+.|++|+|+.+.|..+++..++.... .++++++.||+.
T Consensus 348 e--~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-------------~~~~~~~~lae~ 412 (491)
T KOG0738|consen 348 E--NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-------------DDPVNLEDLAER 412 (491)
T ss_pred c--cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-------------CCCccHHHHHHH
Confidence 2 1356999999999999999999999999999999999999999999998776 788999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 296 LEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 296 ~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
++||||+||..+|++|.+.++||.+.......+..+..++...+++.+||+.|+++++|+++..++.+|++|..+|
T Consensus 413 ~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 413 SEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888877888877777788999999999999999999999999999999886
No 2
>KOG0730|consensus
Probab=100.00 E-value=1.7e-55 Score=417.26 Aligned_cols=309 Identities=39% Similarity=0.624 Sum_probs=279.9
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHH
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDL 93 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~ 93 (371)
.||||+|+++.++|.+++.-.+.+ ..+.++.++....++.. ++..-+.++++|+||+|++++|+.
T Consensus 381 ~thGyvGaDL~~l~~ea~~~~~r~------~~~~~~~A~~~i~psa~---------Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 381 STHGYVGADLAALCREASLQATRR------TLEIFQEALMGIRPSAL---------REILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred HccchhHHHHHHHHHHHHHHHhhh------hHHHHHHHHhcCCchhh---------hheeccCCCCChhhccCHHHHHHH
Confidence 589999999999998776654433 34456666666655443 233345689999999999999999
Q ss_pred HHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHH
Q psy6716 94 LYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKE 172 (371)
Q Consensus 94 l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~ 172 (371)
|++.+.+|+.+++.|.+++ .|++|||||||||||||++||++|++++.+|+.|++.++.++|+|++++.++.+|..|++
T Consensus 446 lq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 446 LQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQ 525 (693)
T ss_pred HHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhh
Confidence 9999999999999999998 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEe
Q psy6716 173 LAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYV 249 (371)
Q Consensus 173 ~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~ 249 (371)
..|||||+||||.+...|.++. +...+++++||++||++.. .++|+|||+||+|+.||++++| ||+..|++
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~------~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA------LKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc------cCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 9999999999999999886433 7789999999999999986 5699999999999999999999 99999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q psy6716 250 PIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMK 329 (371)
Q Consensus 250 ~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~ 329 (371)
|+||.+.|.+|++.+++++++ .+++|+++||+.|+||||+||..+|++|+..++++.+..
T Consensus 600 plPD~~aR~~Ilk~~~kkmp~-------------~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a------- 659 (693)
T KOG0730|consen 600 PLPDLEARLEILKQCAKKMPF-------------SEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA------- 659 (693)
T ss_pred cCccHHHHHHHHHHHHhcCCC-------------CccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-------
Confidence 999999999999999999988 778999999999999999999999999999999998652
Q ss_pred CCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 330 DIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 330 ~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
..|+++||.+|++.++++++.++++.|+++.+.+
T Consensus 660 --------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~~ 693 (693)
T KOG0730|consen 660 --------TEITWQHFEEALKAVRPSLTSELLEKYEDFAARS 693 (693)
T ss_pred --------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhcC
Confidence 2799999999999999999999999999998753
No 3
>KOG0733|consensus
Probab=100.00 E-value=2.2e-52 Score=390.96 Aligned_cols=283 Identities=34% Similarity=0.573 Sum_probs=253.6
Q ss_pred HhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 69 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.++.+...|.++|+||+|+++++.+|..+|.+|..+++.|+.++ .++.|||||||||||||.+|+|+|++.+.+|+.|.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 46677788999999999999999999999999999999999988 66789999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 148 SSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 148 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
..++..+|+|+.++.++.+|..|+...|||||+||+|.|++.|.... ....+++++||..||++.. ..+|+||
T Consensus 578 GPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~------R~gV~vi 651 (802)
T KOG0733|consen 578 GPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE------RRGVYVI 651 (802)
T ss_pred CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc------ccceEEE
Confidence 99999999999999999999999999999999999999999987655 7788999999999999976 5689999
Q ss_pred eecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHcc--CCCHH
Q psy6716 227 AATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLE--GYSSA 302 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--g~s~~ 302 (371)
|+||+|+-+|++++| ||+..+++++|+.++|.+|++.+.+..+. .+.+++|+++||+.+. ||||+
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~-----------pl~~dVdl~eia~~~~c~gftGA 720 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP-----------PLSSDVDLDEIARNTKCEGFTGA 720 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC-----------CCCcccCHHHHhhcccccCCchh
Confidence 999999999999999 99999999999999999999999984221 1278999999999876 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q psy6716 303 DITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIK 369 (371)
Q Consensus 303 di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~ 369 (371)
||..||++|...++++.+....... .+++.......++..||.+|+++++|++++.+.+.|+.-++
T Consensus 721 DLaaLvreAsi~AL~~~~~~~~~~~-~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k 786 (802)
T KOG0733|consen 721 DLAALVREASILALRESLFEIDSSE-DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNK 786 (802)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccC-cccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhh
Confidence 9999999999999999887543221 12222222346889999999999999999999999998765
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-51 Score=365.33 Aligned_cols=246 Identities=39% Similarity=0.660 Sum_probs=228.1
Q ss_pred hccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 73 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
..+.|.+++++|+|++++++.|++.+.+|+.+|++|...+ .||+|||||||||||||.+|||+|++.+..|+.+..+++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3456889999999999999999999999999999999998 888999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
..+|+|+..+.++.+|..|+..+||||||||||++..+|.... ..-.+.+-+||++||++.. ..+|-||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~------~~nvKVI~ 295 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP------RGNVKVIM 295 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC------CCCeEEEE
Confidence 9999999999999999999999999999999999998876443 3345566677888888875 56999999
Q ss_pred ecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 228 ATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 228 ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
+||+++.|||+++| ||++.|+||+|+.+.|.+||+.+.+++.+ ..++|++.||+.++|+||+||+
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-------------~~dvd~e~la~~~~g~sGAdlk 362 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-------------ADDVDLELLARLTEGFSGADLK 362 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-------------ccCcCHHHHHHhcCCCchHHHH
Confidence 99999999999999 99999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
++|.+|.+.|+|+. ...+|++||..|++++..
T Consensus 363 aictEAGm~AiR~~-----------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 363 AICTEAGMFAIRER-----------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHHhHHHHHhc-----------------cCeecHHHHHHHHHHHHh
Confidence 99999999999976 348999999999999744
No 5
>KOG0736|consensus
Probab=100.00 E-value=6.6e-49 Score=376.10 Aligned_cols=280 Identities=31% Similarity=0.534 Sum_probs=257.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
..|++.|+||+|++++|+.|++.|.+|+.++++|....++..|||||||||||||.+|+|+|.++...|+.|...++..+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 36889999999999999999999999999999999877777899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh---hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST---DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
|+|+.+.+++.+|+.|+..+|||||+||+|.++|+|+.++ +...+++++||.+||++... ....|+||++||+
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~----~s~~VFViGATNR 820 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS----SSQDVFVIGATNR 820 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC----CCCceEEEecCCC
Confidence 9999999999999999999999999999999999987654 77899999999999999853 3679999999999
Q ss_pred CCCccHHHHh--cccceEEecCC-CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHcc-CCCHHHHHHH
Q psy6716 232 PWDLDEAFRR--RLEKRIYVPIP-DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLE-GYSSADITIV 307 (371)
Q Consensus 232 ~~~l~~~l~~--rf~~~i~~~~p-~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-g~s~~di~~l 307 (371)
|+.||++++| ||++.+++.++ +.+.+..+++...+++.+ .+++++.++|++++ .|||+|+..+
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkL-------------dedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKL-------------DEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccC-------------CCCcCHHHHHhhCCcCCchhHHHHH
Confidence 9999999999 99999999887 667788899999999998 78999999999874 6999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
|..||..|++|.....++..+.+.........++++||.+|+++.+||++..++..|+..+.+|
T Consensus 888 CSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 9999999999998877766555544445556899999999999999999999999999998876
No 6
>KOG0739|consensus
Probab=100.00 E-value=6.9e-48 Score=333.27 Aligned_cols=295 Identities=44% Similarity=0.774 Sum_probs=261.8
Q ss_pred HHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 60 EEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..++...+...+..+.|++.|+|+.|++.+++.|.+.+.+|...|.+|.....|.+++||||||||||++||+++|.+.
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34566667777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCC
Q psy6716 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 140 ~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
+..|+.|+.++++++|.|++++.++.+|..|+...|+||||||||.+++.+..+. +..+++..+||.+|++...
T Consensus 191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~----- 265 (439)
T KOG0739|consen 191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN----- 265 (439)
T ss_pred CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc-----
Confidence 9999999999999999999999999999999999999999999999999887665 7788999999999988765
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
....|+|+++||.||.||.+++|||.+.|++|+|....|..+|+..+...... ..+.|+.+|+++|+|
T Consensus 266 d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~------------LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHV------------LTEQDFKELARKTEG 333 (439)
T ss_pred CCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccc------------cchhhHHHHHhhcCC
Confidence 36689999999999999999999999999999999999999999998876653 677899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcC-----C----cccc-------------------cCCC-cccccccccHHHHHHHH
Q psy6716 299 YSSADITIVCRDAAFMNLRRYLNQN-----P----AVAM-------------------KDIP-DKELDKAIVQADFDEAV 349 (371)
Q Consensus 299 ~s~~di~~l~~~a~~~~~~~~~~~~-----~----~~~~-------------------~~~~-~~~~~~~i~~~d~~~al 349 (371)
|||+||.-+++.|.+..+|+.-... . ...+ .++. +.-+..++|+.||..++
T Consensus 334 ySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l 413 (439)
T KOG0739|consen 334 YSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSL 413 (439)
T ss_pred CCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHH
Confidence 9999999999999999999863211 0 0001 1111 12235789999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhhC
Q psy6716 350 RNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
.+.+|++..+++.+.+++.+.|
T Consensus 414 ~~tkPTvn~~Dl~k~~~Ft~dF 435 (439)
T KOG0739|consen 414 SRTKPTVNEDDLLKHEKFTEDF 435 (439)
T ss_pred hhcCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999998766
No 7
>KOG0733|consensus
Probab=100.00 E-value=6.1e-45 Score=341.11 Aligned_cols=232 Identities=40% Similarity=0.647 Sum_probs=217.0
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.++++|.+|+|++.....|.+.+.. +.+++.|..++ .|++|||||||||||||++|+++|.+++.||+.|++.++.+.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3467899999999999999999877 88999999988 788999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
+.|++++.++.+|..|....|||+||||||.+.++|...+ ++.++++.+|+..||++.... ....+|+||++||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~--~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK--TKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc--cCCCCeEEEecCCCCc
Confidence 9999999999999999999999999999999999998766 788999999999999887643 1356899999999999
Q ss_pred CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 234 DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 234 ~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
.||++|+| ||+..|.+..|+..+|.+|++..+++..+ ..++++..||..|.||.|+||.+||.+|
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-------------~g~~d~~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-------------SGDFDFKQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-------------CCCcCHHHHHhcCCCccchhHHHHHHHH
Confidence 99999999 99999999999999999999999999887 6789999999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q psy6716 312 AFMNLRRYLNQN 323 (371)
Q Consensus 312 ~~~~~~~~~~~~ 323 (371)
+..+++|.+...
T Consensus 408 a~vAikR~ld~~ 419 (802)
T KOG0733|consen 408 AFVAIKRILDQS 419 (802)
T ss_pred HHHHHHHHhhcc
Confidence 999999988643
No 8
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4e-43 Score=358.45 Aligned_cols=330 Identities=37% Similarity=0.584 Sum_probs=269.8
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcCCC------------------chHHHHHHHHHhcCCChHHHHHHHHHHhhhhcc
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQDK------------------PVNEMYEAILKKLKLDPEEKKLARNILSEVLKA 75 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (371)
.|+||+++++..+|..++...+.+..... -....+..++....+.. ..+....
T Consensus 376 ~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~---------~~~~~~~ 446 (733)
T TIGR01243 376 VTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA---------IREVLVE 446 (733)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc---------cchhhcc
Confidence 47999999999999776655443322100 01122333333332221 1223334
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+..+|++++|++.+++.|.+.+.+|+.+++.+...+ .+++++|||||||||||++|+++|.+++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 5778999999999999999999999999999998876 667899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh--hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST--DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
|+|+.+..++.+|..|+...|+||||||||.+++.+.... ....+++++|+..|+++.. ..+++||+|||+|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~------~~~v~vI~aTn~~ 600 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE------LSNVVVIAATNRP 600 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC------CCCEEEEEeCCCh
Confidence 9999999999999999999999999999999998775432 4567888999999998754 4589999999999
Q ss_pred CCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 233 WDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 233 ~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+.+|++++| ||+..+++|+|+.++|.+||+.+.++..+ .++++++.+|..|+||||+||..+|++
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-------------~~~~~l~~la~~t~g~sgadi~~~~~~ 667 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-------------AEDVDLEELAEMTEGYTGADIEAVCRE 667 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-------------CccCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999998 99999999999999999999999887766 677899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccccCC-CcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 311 AAFMNLRRYLNQNPAVAMKDI-PDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
|...++++.........+... ........|+.+||..|+++++|+++.+++..|++|.++|
T Consensus 668 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 668 AAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred HHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999987654321111110 0001124799999999999999999999999999999875
No 9
>KOG0737|consensus
Probab=100.00 E-value=1.8e-43 Score=315.79 Aligned_cols=279 Identities=41% Similarity=0.699 Sum_probs=240.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
...-.++|+||+|++.+++.+++.+.+|+.++++|.... .|++||||+||||||||++|+++|++.+.+|+.|+.+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 334467899999999999999999999999999997543 788999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
.++|+|+.++.++.+|..|.+.+|++|||||+|.+++.|...+ +....+.++|...+|++.+.. ...|+|+|+||
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~----~~rVlVlgATN 239 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKD----SERVLVLGATN 239 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCC----CceEEEEeCCC
Confidence 9999999999999999999999999999999999998875443 778889999999999998754 44699999999
Q ss_pred CCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 231 FPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 231 ~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+|.++|.+++||+...++++.|+..+|.+|++.+++...+ .+++|+.++|..|+||||+||..+|..
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~-------------e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL-------------EDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc-------------CcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCc-----ccccCCCc------ccccccccHHHHHHHHHhCCCCCCH--HHHHHHHHHHh
Q psy6716 311 AAFMNLRRYLNQNPA-----VAMKDIPD------KELDKAIVQADFDEAVRNCPKTVRP--EDAEKFTDWIK 369 (371)
Q Consensus 311 a~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~~d~~~al~~~~~~~~~--~~~~~~~~~~~ 369 (371)
|+..++++.+.+... ..+.+... ....++++++||..|.+.+-++++. ......+.|..
T Consensus 307 Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~ 378 (386)
T KOG0737|consen 307 AALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNE 378 (386)
T ss_pred HhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHh
Confidence 999999999877411 00100000 1114689999999999987666432 23344455543
No 10
>KOG0740|consensus
Probab=100.00 E-value=4.1e-42 Score=317.98 Aligned_cols=289 Identities=46% Similarity=0.744 Sum_probs=255.8
Q ss_pred HHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 63 KLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
.....+..++....+.+.|+|+.|++.+++.+.+++.+|..+++.|..+..+.+++||.||||+|||+++++||.+++..
T Consensus 134 ~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 134 TLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred hhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce
Confidence 33445556677778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCC
Q psy6716 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNK 221 (371)
Q Consensus 143 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~ 221 (371)
|+.++++.+.++|+|+.+..++.+|..|+..+|+|+||||+|.++.++.... +...++..+++..+++..... ..
T Consensus 214 ff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~----~d 289 (428)
T KOG0740|consen 214 FFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP----DD 289 (428)
T ss_pred EeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC----CC
Confidence 9999999999999999999999999999999999999999999998885444 667788999998888776543 56
Q ss_pred CEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCH
Q psy6716 222 SVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSS 301 (371)
Q Consensus 222 ~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~ 301 (371)
+|+||+|||.|+.+|.+++|||...+++|+|+.+.|..++..++.+.+.. ..+.+++.+++.|+||++
T Consensus 290 rvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~------------l~~~d~~~l~~~Tegysg 357 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNG------------LSDLDISLLAKVTEGYSG 357 (428)
T ss_pred eEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCC------------ccHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999887432 567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 302 ADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 302 ~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
+||.++|.+|++..++...... .+ ...+.+.-++++..||..|++.++++++...++.|.+|++.|
T Consensus 358 sdi~~l~kea~~~p~r~~~~~~---~~-~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~f 423 (428)
T KOG0740|consen 358 SDITALCKEAAMGPLRELGGTT---DL-EFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEF 423 (428)
T ss_pred ccHHHHHHHhhcCchhhcccch---hh-hhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhh
Confidence 9999999999999998764420 01 111222346899999999999999999999999999999876
No 11
>KOG0734|consensus
Probab=100.00 E-value=5.8e-42 Score=316.63 Aligned_cols=238 Identities=35% Similarity=0.596 Sum_probs=219.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
+++|+|+.|.+++|+.|.+.+.+ +..|..|.+++ +-|+||||+||||||||+||||+|.+.+.||++.+.+++-..++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 56899999999999999998765 67788888775 77899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l 235 (371)
|...+.++.+|..|+..+||||||||||.+.++|.... ...+..+++||..||++.. +..|+||++||.|+.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q------NeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ------NEGIIVIGATNFPEAL 452 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc------CCceEEEeccCChhhh
Confidence 99999999999999999999999999999999988776 4778999999999999986 6699999999999999
Q ss_pred cHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 236 DEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 236 ~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
|++|.| ||+.++.+|.||...|.+|++.|+++... ..++|+.-||+-|.||+|+||.+|++.|+.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-------------~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-------------DEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc-------------ccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999887 789999999999999999999999999987
Q ss_pred HHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 314 MNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
.+.... ...+++.|++.|-.++
T Consensus 520 kAa~dg-----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 520 KAAVDG-----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHhcC-----------------cccccHHHHhhhhhhe
Confidence 777654 2378999999998876
No 12
>KOG0727|consensus
Probab=100.00 E-value=2.4e-41 Score=286.69 Aligned_cols=245 Identities=37% Similarity=0.624 Sum_probs=225.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.+.|.+++.|++|++-.++.+++.+.+|+.+.+++++.+ .||+|||+|||||||||++|+++|+.....|+++..+++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456788999999999999999999999999999999988 7889999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
.+|.|+..+.++.+|+.|+..+|+|+||||||.++.++-... ..-.+++-+||++||++.. ..+|-||++
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq------~~nvkvima 300 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------TTNVKVIMA 300 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc------ccceEEEEe
Confidence 999999999999999999999999999999999988764332 3445777788888988875 568999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+.+.+||+++| |+++.|+||+|+..+++-+|..+..++.+ .+++|++.+..+.+..|++||..
T Consensus 301 tnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-------------s~~vdle~~v~rpdkis~adi~a 367 (408)
T KOG0727|consen 301 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-------------SDEVDLEDLVARPDKISGADINA 367 (408)
T ss_pred cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-------------CcccCHHHHhcCccccchhhHHH
Confidence 9999999999999 99999999999999999999999999988 78999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+|++|.+.+++.. ...+...||++|.+..-.
T Consensus 368 icqeagm~avr~n-----------------ryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 368 ICQEAGMLAVREN-----------------RYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HHHHHhHHHHHhc-----------------ceeeeHHHHHHHHHhhcC
Confidence 9999999999975 347899999999998644
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=327.15 Aligned_cols=305 Identities=43% Similarity=0.644 Sum_probs=261.5
Q ss_pred CCCCCCCchhhhccCCcchhHHHhhh-----cCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccCh
Q psy6716 13 FPTHHLPGSLINNLTPSTPLLNIIQL-----NQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGL 87 (371)
Q Consensus 13 ~~~~~~~~~~i~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~ 87 (371)
..|+|+.++++..+|+.+....+... .......+.+...++..... ..+....+.++|.+++|+
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~v~~~diggl 247 (494)
T COG0464 179 ARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS-----------RGVLFEDEDVTLDDIGGL 247 (494)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc-----------cccccCCCCcceehhhcH
Confidence 35788999999999966655444442 12223344455555554433 234445678899999999
Q ss_pred HHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHH
Q psy6716 88 DDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLL 166 (371)
Q Consensus 88 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 166 (371)
+.+++.+.+.+.+|+.+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.++.+++.++|+|+++++++.+
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~ 327 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL 327 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence 9999999999999999999988744 666899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEeccchhhccCCCCChhh-hhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cc
Q psy6716 167 FLLAKELAPSIVFFDEIDSMCSHRSTSTDV-TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RL 243 (371)
Q Consensus 167 ~~~a~~~~~~il~lDeid~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf 243 (371)
|..|+..+||||||||+|.+++.+...... ..+++++|+..+++... ..+|+||++||+|+.+|++++| ||
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~------~~~v~vi~aTN~p~~ld~a~lR~gRf 401 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK------AEGVLVIAATNRPDDLDPALLRPGRF 401 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc------cCceEEEecCCCccccCHhhcccCcc
Confidence 999999999999999999999998766543 36999999999998875 4579999999999999999999 99
Q ss_pred cceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q psy6716 244 EKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQN 323 (371)
Q Consensus 244 ~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~ 323 (371)
+..+++++|+..+|.+|++.++...... +..+.++..+++.++||+++||..+|++|...++++..
T Consensus 402 d~~i~v~~pd~~~r~~i~~~~~~~~~~~-----------~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--- 467 (494)
T COG0464 402 DRLIYVPLPDLEERLEIFKIHLRDKKPP-----------LAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--- 467 (494)
T ss_pred ceEeecCCCCHHHHHHHHHHHhcccCCc-----------chhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 9999999999999999999999865531 25688999999999999999999999999999999863
Q ss_pred CcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy6716 324 PAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDW 367 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 367 (371)
...++.+||..|++.++|+++ |++|
T Consensus 468 -------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 -------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred -------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 237999999999999999987 8888
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=284.32 Aligned_cols=240 Identities=30% Similarity=0.465 Sum_probs=210.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
+..+++|++|++++|+..+-.+. .+..|+.|.. +.|++||||||||||||++|+++|++...|++.+++..+.+.++
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~--WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIME-YLENPERFGD--WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHH-HhhChHHhcc--cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 56789999999999998775543 3556666654 56789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh--hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST--DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD 234 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~ 234 (371)
|+..+.++.++..|++.+|||+||||+|.++-++.-+. +.-..+++.||..||++.. +.+|+.||+||+|+.
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e------neGVvtIaaTN~p~~ 266 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE------NEGVVTIAATNRPEL 266 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc------CCceEEEeecCChhh
Confidence 99999999999999999999999999999987766544 4457889999999999885 668999999999999
Q ss_pred ccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH-HHHHHHH
Q psy6716 235 LDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI-VCRDAAF 313 (371)
Q Consensus 235 l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~-l~~~a~~ 313 (371)
||+++++||...|+|.+|+.+||.+|++.++.++++ .-+.++..++..+.|+||+||.. ++..|..
T Consensus 267 LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-------------pv~~~~~~~~~~t~g~SgRdikekvlK~aLh 333 (368)
T COG1223 267 LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-------------PVDADLRYLAAKTKGMSGRDIKEKVLKTALH 333 (368)
T ss_pred cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-------------ccccCHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 44667999999999999999975 4566777
Q ss_pred HHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 314 MNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
.++.+. ...|+.+|++.|+++..+.
T Consensus 334 ~Ai~ed-----------------~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 334 RAIAED-----------------REKVEREDIEKALKKERKR 358 (368)
T ss_pred HHHHhc-----------------hhhhhHHHHHHHHHhhccc
Confidence 777654 2379999999999985544
No 15
>KOG0735|consensus
Probab=100.00 E-value=4.7e-40 Score=312.75 Aligned_cols=283 Identities=33% Similarity=0.530 Sum_probs=239.2
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcCCC---chHHHHHHHHHhcCCChHHHHHHHHHHhhhhcc-CCCCCcccccChHH
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQDK---PVNEMYEAILKKLKLDPEEKKLARNILSEVLKA-ETNVKWADIAGLDD 89 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~G~~~ 89 (371)
.|.||.-.++..+..-+.+..+....... -..+.|.+.++...+.. .+++... .....|.|++|+.+
T Consensus 604 ~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~a---------LR~ik~~k~tgi~w~digg~~~ 674 (952)
T KOG0735|consen 604 KTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLA---------LRGIKLVKSTGIRWEDIGGLFE 674 (952)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHH---------hhhccccccCCCCceecccHHH
Confidence 36677777776666444444443332222 22444555555444322 1222222 23489999999999
Q ss_pred HHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHH
Q psy6716 90 AKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFL 168 (371)
Q Consensus 90 ~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~ 168 (371)
+++.|.+.+.+|..++..|...+ +.+.|||||||||||||++|.++|..++..|+.|...++..+|.|..+.+++.+|.
T Consensus 675 ~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~ 754 (952)
T KOG0735|consen 675 AKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFE 754 (952)
T ss_pred HHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999877 45679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccc
Q psy6716 169 LAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEK 245 (371)
Q Consensus 169 ~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~ 245 (371)
.|+...|||||+||+|.++|+|+-.. +...+++++||.+||+... -.+|+|+|+|.+|+.+|++++| |+++
T Consensus 755 rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg------l~GV~i~aaTsRpdliDpALLRpGRlD~ 828 (952)
T KOG0735|consen 755 RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG------LDGVYILAATSRPDLIDPALLRPGRLDK 828 (952)
T ss_pred HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc------cceEEEEEecCCccccCHhhcCCCccce
Confidence 99999999999999999999987554 7889999999999998876 4589999999999999999999 9999
Q ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q psy6716 246 RIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNP 324 (371)
Q Consensus 246 ~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~ 324 (371)
.++.+.|+..+|.+|++.+...... ..++|++.+|..|+||||+||+.++..|...++++.+.+..
T Consensus 829 ~v~C~~P~~~eRl~il~~ls~s~~~-------------~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 829 LVYCPLPDEPERLEILQVLSNSLLK-------------DTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred eeeCCCCCcHHHHHHHHHHhhccCC-------------ccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987776 78999999999999999999999999999999999987654
No 16
>KOG0652|consensus
Probab=100.00 E-value=1.7e-40 Score=282.75 Aligned_cols=245 Identities=39% Similarity=0.623 Sum_probs=223.5
Q ss_pred hccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 73 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
..+.|...++||+|++..++.|.+.+.+|..+++.|..++ .||+|+|+|||||||||.+||++|...+..|..+-...+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3567888999999999999999999999999999999988 788999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
...|.|+..+.++..|..|+...|+||||||+|.+..++-.+. ..-.+..-+||++++++++ ...+-||+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss------~~~vKviA 315 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS------DDRVKVIA 315 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC------ccceEEEe
Confidence 9999999999999999999999999999999999998876554 2234455567778888876 56899999
Q ss_pred ecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 228 ATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 228 ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
+||+.+-|+|+++| |+++.|+||.|+.+.|..|++.+.+++.. .++++++++|+.|++|+|++..
T Consensus 316 ATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-------------~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 316 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-------------SDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred ecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-------------CCCCCHHHHhhcccccCchhhe
Confidence 99999999999999 99999999999999999999999999887 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
.+|-+|.+.++++. ...++.+||..++..++
T Consensus 383 AVcVEAGMiALRr~-----------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 383 AVCVEAGMIALRRG-----------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred eeehhhhHHHHhcc-----------------cccccHHHHHHHHHHHH
Confidence 99999999999986 23789999999998764
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=304.07 Aligned_cols=246 Identities=35% Similarity=0.624 Sum_probs=219.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.+.|.++|+||+|++.+++.|++.+.+|+.+++.+...+ .+++++||+||||||||++|+++|+.++.+|+.+.++.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999999999999999877 6778999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
..+.|+....++.+|..++..+|+||||||+|.+++++.... ....+.+..|+..++++.. ..+++||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~------~~~v~VI~a 290 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ------TTNVKVIMA 290 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC------CCCEEEEEe
Confidence 999999999999999999999999999999999987653221 2334566778888876653 347899999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+++.+|++++| ||+..|++++|+.++|..|++.++.+.++ ..+.+++.+|..++||||+||..
T Consensus 291 TN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-------------~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 291 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-------------SEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred cCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-------------CcccCHHHHHHHcCCCCHHHHHH
Confidence 9999999999998 99999999999999999999999988776 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
+|++|...++++. ...|+.+||..|++++...
T Consensus 358 l~~eA~~~A~r~~-----------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 358 ICQEAGMQAVRKN-----------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHHhc
Confidence 9999999999875 2379999999999997544
No 18
>KOG0728|consensus
Probab=100.00 E-value=1.8e-39 Score=274.95 Aligned_cols=257 Identities=35% Similarity=0.579 Sum_probs=228.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
..|..+++-++|++..++.+.+.+.+|..+|++|..++ ..|+|+|||||||||||.+|+++|....+.|++++.+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34566677789999999999999999999999999988 45689999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
+|.|+..+.++.+|-.|+..+|+|+|.||||++...+..++ ..-.+..-+|++++|++.. ..++-||++|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea------tknikvimat 293 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA------TKNIKVIMAT 293 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc------ccceEEEEec
Confidence 99999999999999999999999999999999988765433 2334555567778888876 5588999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|+.+-||++++| |+++.|+||+|+.+.|.+|++.+.+++++ ...+++..+|+...|.||+++..+
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-------------~rgi~l~kiaekm~gasgaevk~v 360 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-------------TRGINLRKIAEKMPGASGAEVKGV 360 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-------------hcccCHHHHHHhCCCCccchhhhh
Confidence 999999999999 99999999999999999999999999988 678899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDW 367 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 367 (371)
|.+|.+.++++. ...+|++||+-|..++-...+..++.-.+-|
T Consensus 361 cteagm~alrer-----------------rvhvtqedfemav~kvm~k~~e~nms~~kl~ 403 (404)
T KOG0728|consen 361 CTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 403 (404)
T ss_pred hhhhhHHHHHHh-----------------hccccHHHHHHHHHHHHhccccccchHHHhh
Confidence 999999999975 3489999999999998666666666555545
No 19
>KOG0726|consensus
Probab=100.00 E-value=3.8e-40 Score=284.48 Aligned_cols=242 Identities=38% Similarity=0.621 Sum_probs=219.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
..|..++.|++|++..++.|.+.+.+|+.+|+++..++ .||+||+|||+||||||.||+|+|+.....|+++-.+++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34667899999999999999999999999999999888 88899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-h---hhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-D---VTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~---~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
+|.|+..+.++.+|+.|...+|+|+||||||.+..++-..+ . ...+..-+||++++++.+ ..+|-||++|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds------rgDvKvimAT 331 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS------RGDVKVIMAT 331 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc------cCCeEEEEec
Confidence 99999999999999999999999999999999998775443 2 223344466677777765 5689999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|+.+.|||++.| |+++.|+||.||...++.||..+..++.+ ..+++++.+...-+.+||+||.++
T Consensus 332 nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl-------------~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 332 NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL-------------AEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred ccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccch-------------hccccHHHHhhcccccccccHHHH
Confidence 999999999999 99999999999999999999999998887 788899999988899999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
|.+|...++|+. +..++.+||..|.+++
T Consensus 399 ctEaGllAlRer-----------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 399 CTEAGLLALRER-----------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred HHHHhHHHHHHH-----------------HhhccHHHHHHHHHHH
Confidence 999999999976 4589999999999876
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.4e-38 Score=304.36 Aligned_cols=254 Identities=24% Similarity=0.355 Sum_probs=217.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
+..+|++++|++.+|+.+.+..... .......+ .+++|+||+||||||||++|+++|++++.+++.++++.+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4678999999999999998754221 12222333 5678999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC--ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST--STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
+|+.+..++.+|..++..+||||||||||.+++.+.. ..+...+++..|+..|+.. ..+++||+|||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--------~~~V~vIaTTN~~~ 371 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--------KSPVFVVATANNID 371 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--------CCceEEEEecCChh
Confidence 9999999999999999999999999999999875432 3355678888898888642 34799999999999
Q ss_pred CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 234 DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 234 ~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
.+|++++| ||+..++++.|+.++|.+||+.++.+.... ...+.+++.+|..|+||||+||.++|.+|
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~-----------~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK-----------SWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC-----------cccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 99999998 999999999999999999999999876431 13477899999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCC--CCHHHHHHHHHHHhh
Q psy6716 312 AFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT--VRPEDAEKFTDWIKW 370 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~--~~~~~~~~~~~~~~~ 370 (371)
...+..+. ..++.+||..|++.+.|. ...+.|+.+.+|.+.
T Consensus 441 ~~~A~~~~------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 441 MYIAFYEK------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHcC------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 88777542 378999999999999997 478899999999863
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.8e-38 Score=298.65 Aligned_cols=250 Identities=39% Similarity=0.623 Sum_probs=218.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
...+...|++|+|++++++.+++.+..|+.+++.+...+ .+++++||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455788999999999999999999999999999998876 6778999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
..+.|+....++.+|..+....|+||||||+|.+++.+.... ....+.+..++..++++.. ..+++||+|
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------~~~v~VI~a 276 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP------RGNVKIIAA 276 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC------CCCEEEEEe
Confidence 999999999999999999999999999999999987654332 1223444556666655443 447999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+++.++++++| ||+..+++++|+.++|.+|++.++.+..+ ..+.++..+|..|+||+|+||..
T Consensus 277 Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-------------~~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 277 TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-------------ADDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-------------CCcCCHHHHHHHcCCCCHHHHHH
Confidence 9999999999998 99999999999999999999999988766 56688999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPE 359 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~ 359 (371)
+|++|...++++. ...|+.+||.+|++.++++...+
T Consensus 344 l~~eA~~~a~~~~-----------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 344 ICTEAGMFAIRDD-----------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhcccccc
Confidence 9999999998863 23799999999999998876543
No 22
>KOG0731|consensus
Probab=100.00 E-value=2.5e-38 Score=309.18 Aligned_cols=241 Identities=40% Similarity=0.625 Sum_probs=219.7
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
..++|.|+.|.+++++.|.+.+.+ +..|+.|..++ +.|+|+||+||||||||.||+|+|.+.+.||+.++.+++...+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999998755 77788888776 7889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCC-----CChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-----TSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+|.....++.+|..|+...|||+||||||.+...+. .+++.....+++||..||++.. ...|+|+++||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~------~~~vi~~a~tn 458 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET------SKGVIVLAATN 458 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC------CCcEEEEeccC
Confidence 999899999999999999999999999999998884 2335667889999999999976 46899999999
Q ss_pred CCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 231 FPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 231 ~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
+++-||++++| ||++.++++.|+..+|.+|++.+++...+. .++.++..+|.+|+||+|+||.++|
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~------------~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD------------DEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC------------cchhhHHHHHhcCCCCcHHHHHhhh
Confidence 99999999999 999999999999999999999999988873 4678899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
++|+..+.++. ...|+..||++|++++.
T Consensus 527 neaa~~a~r~~-----------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 527 NEAALLAARKG-----------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred hHHHHHHHHhc-----------------cCccchhhHHHHHHHHh
Confidence 99999999976 24799999999999654
No 23
>KOG0729|consensus
Probab=100.00 E-value=2.3e-38 Score=270.51 Aligned_cols=244 Identities=33% Similarity=0.574 Sum_probs=217.5
Q ss_pred hccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 73 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
..+.|.++++|++|..+.++.|++.+..|+.+++.|-.++ .|++|||+|||||||||.+||++|+..+..|+.|-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3456888999999999999999999999999999999988 788999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhh---HHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRM---KSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~---~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
..+|+|+..+.++.+|..|+....|+||+||||.+.+.+-..+ +..+.+ .-+|+.+++++.. ..++-|++
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp------rgnikvlm 321 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP------RGNIKVLM 321 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC------CCCeEEEe
Confidence 9999999999999999999999999999999999987654332 223333 4455566666654 66899999
Q ss_pred ecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 228 ATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 228 ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
+||+|+.|+++++| |+++.++|.+|+.+.|..|++.+.+.+.. ..++-++.+|+.+...+|++|+
T Consensus 322 atnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv-------------erdir~ellarlcpnstgaeir 388 (435)
T KOG0729|consen 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV-------------ERDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred ecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc-------------ccchhHHHHHhhCCCCcchHHH
Confidence 99999999999999 99999999999999999999999888776 6788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
.+|.+|.+.+++.. ....|..||..|+.++
T Consensus 389 svcteagmfairar-----------------rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 389 SVCTEAGMFAIRAR-----------------RKVATEKDFLDAVNKV 418 (435)
T ss_pred HHHHHhhHHHHHHH-----------------hhhhhHHHHHHHHHHH
Confidence 99999999999865 2367899999999887
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=291.87 Aligned_cols=244 Identities=39% Similarity=0.609 Sum_probs=215.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
...|..+|+||+|++..++.+.+.+.+|+.+++.+...+ .++.++||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345778999999999999999999999999999998877 6778999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
..+.|+....++.+|..+....|+||||||||.++.++.... ....+.+..|+..++++.. ..++.||++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~------~~~V~VI~A 328 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS------RGDVKVIMA 328 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc------cCCeEEEEe
Confidence 999999999999999999999999999999999987654321 2234455667777776643 447899999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+++.++++++| ||+..|+|++|+.++|.+||+.++.+..+ ..+++++.++..++|||++||..
T Consensus 329 TNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-------------~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 329 TNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-------------AEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred cCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-------------CcCcCHHHHHHhcCCCCHHHHHH
Confidence 9999999999987 99999999999999999999999988776 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
+|++|...|+++. ...|+.+||..|++++.
T Consensus 396 i~~eA~~~Alr~~-----------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 396 ICTEAGLLALRER-----------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHHHHhc-----------------CCccCHHHHHHHHHHHH
Confidence 9999999999875 23799999999999973
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.9e-35 Score=289.55 Aligned_cols=242 Identities=38% Similarity=0.603 Sum_probs=211.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
..+..+|+|++|++.+++.+++.+.+ +..++.+...+ .+++++||+||||||||++|+++|.+++.+++.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35678999999999999999988765 66677676554 66789999999999999999999999999999999999988
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
.+.|.....++.+|..++...|+||||||||.+..++... .......+++|+..|+++.. ..+++||+||
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~------~~~v~vI~aT 200 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT------NTGVIVIAAT 200 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC------CCCeEEEEec
Confidence 8889888999999999999999999999999998876542 23445778889999987754 4579999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|+++.+|++++| ||+..++++.|+.++|.+|++.++..... ..+.++..+|..+.||+++||..+
T Consensus 201 n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-------------~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 201 NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-------------APDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-------------CcchhHHHHHHhCCCCCHHHHHHH
Confidence 999999999998 99999999999999999999999987665 457789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
|++|...+.++. ...|+.+||..|+.++.
T Consensus 268 ~~eA~~~a~~~~-----------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 268 LNEAALLAARKN-----------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHh
Confidence 999987776643 23799999999999874
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=285.82 Aligned_cols=240 Identities=38% Similarity=0.602 Sum_probs=218.1
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
...++|.|+.|.+++++.+.+.+.+ +..|..|...+ ..|+|+||+||||||||.+||++|.+.+.||+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5678999999999999999998755 55566666554 778999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC----ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
++|-....++.+|.+|++.+|||+||||||.+...|.. +.+.....+++||..||++.. +..|+|+++||
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~------~~gviviaaTN 296 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG------NEGVIVIAATN 296 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC------CCceEEEecCC
Confidence 99999999999999999999999999999999988742 335666789999999999885 56899999999
Q ss_pred CCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 231 FPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 231 ~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
+|+-+|++++| ||++.+.++.||...|.+|++.+++...+ .+++++..+|+.|.||+++|+.+++
T Consensus 297 RpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-------------~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 297 RPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-------------AEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred CcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-------------CCcCCHHHHhhhCCCcccchHhhhH
Confidence 99999999999 99999999999999999999999998887 6788999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
++|+..+.++. ...|+..||.+|..++
T Consensus 364 NEAal~aar~n-----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 364 NEAALLAARRN-----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred HHHHHHHHHhc-----------------CeeEeccchHHHHHHH
Confidence 99999999876 3479999999999986
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.1e-35 Score=275.79 Aligned_cols=243 Identities=40% Similarity=0.657 Sum_probs=210.6
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
...+...|++++|++++++.+.+.+..|+.+++.+...+ .++.++||+||||||||++|+++|+.++.+|+.+.++.+.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 345788999999999999999999999999999998876 6678999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
..+.|+....++.+|..++...|+||||||+|.+...+.... ......+..++..++++.. ..++.||+|
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~------~~~v~vI~t 267 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP------RGNVKVIAA 267 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC------CCCEEEEEe
Confidence 888999888999999999988999999999999987654322 1223444556666655432 357899999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||.++.+++++++ ||+..++++.|+.++|.+|++.++....+ ..+.++..++..+.||+|+||..
T Consensus 268 tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-------------~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 268 TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-------------AEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-------------CccCCHHHHHHHcCCCCHHHHHH
Confidence 9999999999998 99999999999999999999999887765 45678999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
+|++|...++++. ...|+.+||..|++.+
T Consensus 335 l~~~A~~~a~~~~-----------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 335 ICTEAGMFAIREE-----------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHhC-----------------CCccCHHHHHHHHHHh
Confidence 9999999998864 2379999999999875
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.7e-34 Score=284.52 Aligned_cols=239 Identities=38% Similarity=0.609 Sum_probs=206.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
...+|+|++|++++++.+.+.+.. +..+..+...+ .+++++||+||||||||++|+++|.+++.||+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999988755 55666666554 5678999999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC----ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
.|.....++.+|..+....||||||||||.+...+.. ........+.+|+..++++.. ..+++||++||+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~------~~~ViVIaaTN~ 330 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG------NKGVIVIAATNR 330 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC------CCCeeEEEecCc
Confidence 8887888999999999999999999999999876532 223445677888888887653 458999999999
Q ss_pred CCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 232 PWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 232 ~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
++.++++++| ||+..+.+++|+.++|.+|++.+++.... ..+.++..+|..+.||+++||..+|+
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-------------~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-------------SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-------------chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999998 99999999999999999999999987554 56778999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 310 DAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
+|+..+.++. ...|+.+||+.|+.++
T Consensus 398 eAal~a~r~~-----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 398 EAAILTARRK-----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHhC-----------------CCCcCHHHHHHHHHHH
Confidence 9988777654 2369999999999986
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.1e-33 Score=266.04 Aligned_cols=258 Identities=32% Similarity=0.529 Sum_probs=206.8
Q ss_pred hhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCC--------
Q psy6716 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSN-------- 142 (371)
Q Consensus 72 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------- 142 (371)
+....|..+|++|+|++..++.+++.+.+|+.+++.+...+ .+++++|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34556888999999999999999999999999999998776 567899999999999999999999998654
Q ss_pred --eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCC--hhhhhhhHHHHHHHhhccccc
Q psy6716 143 --FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTS--TDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 143 --~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~ 214 (371)
|+.++.+++..++.|+.+..++.+|..++.. .|+||||||+|.+++++..+ .+....++.+|+..|+++..
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~- 330 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES- 330 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-
Confidence 5566777888899999999999999988764 58999999999999876542 24456778899999988764
Q ss_pred CCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcC-CCCcchhhhhhcccCCCcccHHH
Q psy6716 215 SNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNV-KVDKDVNIEVLNVKVDKDVNIEV 291 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
..+++||+|||+++.||++++| ||+..|+|++|+.++|.+|++.++... .+..+.. ...=....++..
T Consensus 331 -----~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~----~~~g~~~a~~~a 401 (512)
T TIGR03689 331 -----LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLA----EFDGDREATAAA 401 (512)
T ss_pred -----CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHH----HhcCCCHHHHHH
Confidence 3479999999999999999999 999999999999999999999998642 2211100 000011223333
Q ss_pred HHHH-----------------------------ccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccH
Q psy6716 292 LAER-----------------------------LEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQ 342 (371)
Q Consensus 292 la~~-----------------------------~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 342 (371)
+++. ++.+||++|..+|.+|...++++.+... ...|+.
T Consensus 402 l~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-------------~~~~~~ 468 (512)
T TIGR03689 402 LIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-------------QVGLRI 468 (512)
T ss_pred HHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-------------CcCcCH
Confidence 3332 4568999999999999999999886432 237889
Q ss_pred HHHHHHHHhC
Q psy6716 343 ADFDEAVRNC 352 (371)
Q Consensus 343 ~d~~~al~~~ 352 (371)
+|+..|+..-
T Consensus 469 ~~l~~a~~~e 478 (512)
T TIGR03689 469 EHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 30
>KOG0730|consensus
Probab=100.00 E-value=1.8e-33 Score=267.58 Aligned_cols=221 Identities=38% Similarity=0.665 Sum_probs=207.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
... ++++|.......+++.+.+|+.++..+...+ .+++++|+|||||||||.+++++|++.+..++.++++.+..++.
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 344 6899999999999999999999999998877 77899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc
Q psy6716 157 GDSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l 235 (371)
|+.+..++..|+.+...+ |+++||||+|.+++++........++..+|+..+++... ..+++||++||+|+.|
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~------~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP------DAKVIVLAATNRPDSL 333 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC------cCcEEEEEecCCcccc
Confidence 999999999999999999 999999999999999887777788999999999998874 4589999999999999
Q ss_pred cHHHHh-cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy6716 236 DEAFRR-RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314 (371)
Q Consensus 236 ~~~l~~-rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~ 314 (371)
+++++| ||+..+.+..|+..+|.+|++.++.+++. .++.++..+|..+.||+|+|+..+|.+|...
T Consensus 334 d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~-------------~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 334 DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNL-------------LSDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCC-------------cchhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999887 5678999999999999999999999999998
Q ss_pred HHHH
Q psy6716 315 NLRR 318 (371)
Q Consensus 315 ~~~~ 318 (371)
+.++
T Consensus 401 ~~r~ 404 (693)
T KOG0730|consen 401 ATRR 404 (693)
T ss_pred Hhhh
Confidence 8887
No 31
>KOG0651|consensus
Probab=100.00 E-value=7.5e-34 Score=247.67 Aligned_cols=251 Identities=34% Similarity=0.602 Sum_probs=215.8
Q ss_pred HHhhhhccC-CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 68 ILSEVLKAE-TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 68 ~~~~~~~~~-~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+..++.++. ...+|+.++|...+...+++.+..|+..+.++.+.+ .||.+++||||||+|||.+|+++|..++..|+.
T Consensus 117 ~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 117 LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 444555444 457999999999999999999999999999999876 788999999999999999999999999999999
Q ss_pred EecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhh---hhHHHHHHHhhcccccCCCCCCC
Q psy6716 146 ITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTR---RMKSELLCQMDGLASVSNEDPNK 221 (371)
Q Consensus 146 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~---~~~~~ll~~l~~~~~~~~~~~~~ 221 (371)
+..+.+.+++.|+..+.++..|..|+...||+||+||||.+.+.+.... .... +.+..|+++|+++.. ..
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~------l~ 270 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT------LH 270 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh------cc
Confidence 9999999999999999999999999999999999999999988764433 2233 344445555555554 55
Q ss_pred CEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCC
Q psy6716 222 SVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGY 299 (371)
Q Consensus 222 ~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~ 299 (371)
+|-+|+|||+|+.|+++|+| |+++.+++|+|+...|..|++...+.... ....+.+.+.+.++||
T Consensus 271 rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-------------~Geid~eaivK~~d~f 337 (388)
T KOG0651|consen 271 RVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-------------HGEIDDEAILKLVDGF 337 (388)
T ss_pred cccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-------------cccccHHHHHHHHhcc
Confidence 89999999999999999999 99999999999999999988887776655 5677899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 300 SSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 300 s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+++|++..|.+|-.-+++.. ...+..+||..+++++..
T Consensus 338 ~gad~rn~~tEag~Fa~~~~-----------------~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 338 NGADLRNVCTEAGMFAIPEE-----------------RDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred ChHHHhhhcccccccccchh-----------------hHHHhHHHHHHHHHHHHH
Confidence 99999999999987777654 336789999999988743
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.2e-32 Score=275.39 Aligned_cols=262 Identities=38% Similarity=0.655 Sum_probs=224.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
+..+|++|+|++.+++.+++.+.+|+.+++.+...+ .++.++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568999999999999999999999999999998877 6678999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD 234 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~ 234 (371)
.|.....++.+|..+....|++|||||+|.+.+++.... +...+++.+|+..|+++.. ...++||++||.++.
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~------~~~vivI~atn~~~~ 326 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG------RGRVIVIGATNRPDA 326 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc------CCCEEEEeecCChhh
Confidence 999999999999999999999999999999998765432 4456788999999987754 457899999999999
Q ss_pred ccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 235 LDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 235 l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+++++++ ||+..+.++.|+.++|.+|++.+.+...+ ..+.+++.++..+.||+++|+..+|+.|.
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-------------~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-------------AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999998 99999999999999999999988887665 56778999999999999999999999999
Q ss_pred HHHHHHHhhcCCcc-cccCCCcc-cccccccHHHHHHHHHhCCCCCC
Q psy6716 313 FMNLRRYLNQNPAV-AMKDIPDK-ELDKAIVQADFDEAVRNCPKTVR 357 (371)
Q Consensus 313 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~~~d~~~al~~~~~~~~ 357 (371)
..++++.+...... ....+... .....++.+||..|++.++|+..
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~ 440 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI 440 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccccc
Confidence 99999876522110 00011110 11236899999999999988753
No 33
>KOG0732|consensus
Probab=100.00 E-value=2.4e-32 Score=273.87 Aligned_cols=264 Identities=36% Similarity=0.594 Sum_probs=226.9
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCC-----CeEEEecc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKS-----NFFNITSS 149 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~v~~~ 149 (371)
...+.|++++|++.+++.|++.+.+|+.+++.|...+ .|++|||++||||||||..|+++|..+.. .|+.-+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3567899999999999999999999999999999877 78899999999999999999999988743 56666788
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 150 TLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 150 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
+..++|+|+.++.++.+|+.|+..+|+|+|+||||.|++.+.... .....++..||..|+++.. .+.|+||++
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds------RgqVvvigA 412 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS------RGQVVVIGA 412 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC------CCceEEEcc
Confidence 889999999999999999999999999999999999999986554 5667899999999999987 458999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+++.++++++| ||++.+++++|+.+.|..|+....++-.-. ....-+..+|+.+.||-|+||+.
T Consensus 413 TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~------------i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 413 TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP------------ISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC------------CCHHHHHHHHHhccccchHHHHH
Confidence 9999999999999 999999999999999999999988776532 44556789999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRP 358 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 358 (371)
+|.+|+..++++...+.......-..+ .....+..+||..|+.++.|+-..
T Consensus 481 LCTeAal~~~~r~~Pq~y~s~~kl~~d-~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 481 LCTEAALIALRRSFPQIYSSSDKLLID-VALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred HHHHHhhhhhccccCeeeccccccccc-chhhhhhhHhhhhhhhccCCCCCc
Confidence 999999999998876554322111111 112248899999999999877654
No 34
>KOG0741|consensus
Probab=100.00 E-value=1.6e-32 Score=254.09 Aligned_cols=273 Identities=28% Similarity=0.482 Sum_probs=224.9
Q ss_pred CCCCCccc--ccChHHHHHHH-HHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCC-CeEEEeccc
Q psy6716 76 ETNVKWAD--IAGLDDAKDLL-YEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKS-NFFNITSST 150 (371)
Q Consensus 76 ~~~~~~~~--i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~-~~~~v~~~~ 150 (371)
.|...|.+ |+|++.-...+ ++++......|+...+++ .+-+|+|||||||||||.+||.|..-++. +--.|+..+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35666766 57888776665 556666677788888887 56689999999999999999999998865 445679999
Q ss_pred ccccccchHHHHHHHHHHHHHHhC--------CcEEEeccchhhccCCCCC---hhhhhhhHHHHHHHhhcccccCCCCC
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELA--------PSIVFFDEIDSMCSHRSTS---TDVTRRMKSELLCQMDGLASVSNEDP 219 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~--------~~il~lDeid~l~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~ 219 (371)
+..+|+|+++.+++.+|..|.... --||++||||+++..|... .+....++++||.-||+....
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL----- 367 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL----- 367 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh-----
Confidence 999999999999999999987542 2399999999999877643 367789999999999998864
Q ss_pred CCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHcc
Q psy6716 220 NKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLE 297 (371)
Q Consensus 220 ~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 297 (371)
.+++||+-||+.+.+|++|+| ||..++++.+||+..|.+|++.+..++.-. -.+..++|+.+||.+|.
T Consensus 368 -NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~---------~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 368 -NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN---------NKLSADVDLKELAALTK 437 (744)
T ss_pred -hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc---------CCCCCCcCHHHHHHHhc
Confidence 489999999999999999999 999999999999999999999888766532 23478999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCC--CHHHHHHHH
Q psy6716 298 GYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTV--RPEDAEKFT 365 (371)
Q Consensus 298 g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~--~~~~~~~~~ 365 (371)
.|||++|..+++.|...|+-|.+...-.........+ ...++++||..|+..++|.+ +.++++.|.
T Consensus 438 NfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e--~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 438 NFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIE--NLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred CCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhh--heeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999999999999999998765533222222111 24799999999999999986 667776664
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.7e-32 Score=282.48 Aligned_cols=204 Identities=18% Similarity=0.253 Sum_probs=167.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc-------------------------------------
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW------------------------------------- 155 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~------------------------------------- 155 (371)
.+++||||+||||||||++|+++|.+++.||+.|+++++...+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 6789999999999999999999999999999999999887543
Q ss_pred ----cchHH--HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 156 ----YGDSE--KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 156 ----~g~~~--~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
.+... ..++.+|+.|+..+||||||||||.+..+.. ....+.+|+..|++.... ....+|+|||||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-----~~ltL~qLLneLDg~~~~---~s~~~VIVIAAT 1779 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-----NYLSLGLLVNSLSRDCER---CSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-----ceehHHHHHHHhcccccc---CCCCCEEEEEeC
Confidence 11112 2378899999999999999999999976521 122478888988865421 124589999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHh--cCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQ--NVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|+|+.||||++| ||+..|.++.|+..+|.+++..++. +..+. ....+++.+|+.|.||||+||.
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~------------~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLE------------KKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCC------------cccccHHHHHHhCCCCCHHHHH
Confidence 999999999999 9999999999999999998886543 33331 2235799999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
++|++|+..++++. ...|+.+++..|+.++.
T Consensus 1848 nLvNEAaliAirq~-----------------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1848 ALTNEALSISITQK-----------------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHH
Confidence 99999999999975 23789999999998764
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.4e-31 Score=268.14 Aligned_cols=241 Identities=34% Similarity=0.571 Sum_probs=207.8
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
...|.++.|.+..+.++.+.+.++ ..+..+...+ ..++++||+||||||||++|++++.+++.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 456889999999999999988763 3344444333 55688999999999999999999999999999999999988888
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
+.....++.+|..++...|+||||||+|.+...+... ......++++|+..|+++.. ..+++||+|||+|
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~------~~~vivIaaTN~p 300 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG------NEGIIVIAATNRP 300 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC------CCCeeEEEecCCh
Confidence 8888889999999999999999999999998776532 23455688899999988764 4589999999999
Q ss_pred CCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 233 WDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 233 ~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+.+|++++| ||++.+.++.|+.++|.+|++.++.+.++ ..+.++..+|+.+.||||+||..+|++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-------------~~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------APDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-------------CCcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 999999998 99999999999999999999999988776 567889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 311 AAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 311 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
|...+.++. ...|+.+||..|+.++...
T Consensus 368 Aa~~a~r~~-----------------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 368 AALFAARGN-----------------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHcC-----------------CCcccHHHHHHHHHHHhcc
Confidence 999888753 2379999999999877543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=5.9e-29 Score=225.14 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=144.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHh-----CCcEEEeccchhhc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL-----APSIVFFDEIDSMC 187 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~il~lDeid~l~ 187 (371)
++|.+++||||||||||++|+++|++++.+++.++++++.++|+|+.++.++.+|..|... +||||||||||.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 6779999999999999999999999999999999999999999999999999999999764 59999999999999
Q ss_pred cCCCCCh-hhhhhhH-HHHHHHhhcccc-----cC-CCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHH
Q psy6716 188 SHRSTST-DVTRRMK-SELLCQMDGLAS-----VS-NEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATR 257 (371)
Q Consensus 188 ~~~~~~~-~~~~~~~-~~ll~~l~~~~~-----~~-~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er 257 (371)
+.+.... ....+++ .+|++.+|+... .. ......+|+||+|||+|+.|+++|+| ||+..+ ..|+.++|
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R 303 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDR 303 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHH
Confidence 9876433 3334554 789999886421 11 12345689999999999999999999 998854 68999999
Q ss_pred HHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 258 VSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 258 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
.+|++.++++.++ +..++..|+..+.|
T Consensus 304 ~eIL~~~~r~~~l--------------~~~dv~~Lv~~f~g 330 (413)
T PLN00020 304 IGVVHGIFRDDGV--------------SREDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHhccCCC--------------CHHHHHHHHHcCCC
Confidence 9999999998765 35678888888877
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.92 E-value=1.4e-23 Score=190.73 Aligned_cols=216 Identities=17% Similarity=0.237 Sum_probs=158.7
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcC----CCCccEEEEcCCCchHHHHHHHHHHHcC-------CCeEEEeccc
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR----RPWKGVLLVGPPGTGKTMLAKAAATETK-------SNFFNITSST 150 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~----~~~~~vLl~Gp~GtGKt~la~~la~~~~-------~~~~~v~~~~ 150 (371)
.+++|++++|++|.+.+.+.. ........+ .++.+++|+||||||||++|+++|..+. .+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 369999999999999876633 233333333 2334699999999999999999988652 3689999999
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+.+.++|........++..+. ++||||||++.+...+. ..+.....+..|+..|+.. ..+++||++++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-~~~~~~e~~~~L~~~me~~--------~~~~~vI~ag~ 169 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-ERDYGSEAIEILLQVMENQ--------RDDLVVIFAGY 169 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-ccchHHHHHHHHHHHHhcC--------CCCEEEEEeCC
Confidence 988888877666666666654 79999999999965332 2234567788888888643 23677777775
Q ss_pred CCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH----c--cCC
Q psy6716 231 FPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER----L--EGY 299 (371)
Q Consensus 231 ~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~--~g~ 299 (371)
... .++|++.+||+..+.|++|+.+++..|+..++.+.+... .++ ....+... . ..|
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l-----------~~~-~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQL-----------TPE-AEKALLDYIKKRMEQPLF 237 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCC-----------Chh-HHHHHHHHHHHhCCCCCC
Confidence 431 346899999999999999999999999999998765421 111 23333332 1 334
Q ss_pred C-HHHHHHHHHHHHHHHHHHHhhc
Q psy6716 300 S-SADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 300 s-~~di~~l~~~a~~~~~~~~~~~ 322 (371)
. +++++.+++.|......|....
T Consensus 238 GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 238 ANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 8999999999998888887665
No 39
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=3.2e-25 Score=208.90 Aligned_cols=259 Identities=19% Similarity=0.221 Sum_probs=186.5
Q ss_pred CCCCCCCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHH
Q psy6716 13 FPTHHLPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKD 92 (371)
Q Consensus 13 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 92 (371)
+-.||.+..+|++++ .|+++|+.||++.+.+...++++++......+.... . ........+++|.+..++
T Consensus 82 ~Tg~g~i~~AV~A~k-~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~---~------~~~~~~~~~liG~S~am~ 151 (464)
T COG2204 82 MTGHGDIDTAVEALR-LGAFDFLEKPFDLDRLLAIVERALELRELQRENRRS---L------KRAKSLGGELVGESPAMQ 151 (464)
T ss_pred EeCCCCHHHHHHHHh-cCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhh---h------hccccccCCceecCHHHH
Confidence 446889999999999 788999999999999999999999977665554320 0 012234667999999999
Q ss_pred HHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEeccccccc-----ccchHH----
Q psy6716 93 LLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNITSSTLTSK-----WYGDSE---- 160 (371)
Q Consensus 93 ~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~~~~l~~~-----~~g~~~---- 160 (371)
++++.+ .+.+....+|||+|++||||..+||+||..+.+ ||+.+||..++.. ++|...
T Consensus 152 ~l~~~i----------~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFT 221 (464)
T COG2204 152 QLRRLI----------AKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFT 221 (464)
T ss_pred HHHHHH----------HHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcC
Confidence 999998 666677788999999999999999999998865 9999999998754 233211
Q ss_pred HH---HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc--cc-CCCCCCCCEEEEeecCCC--
Q psy6716 161 KL---IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA--SV-SNEDPNKSVLILAATNFP-- 232 (371)
Q Consensus 161 ~~---~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~--~~-~~~~~~~~v~vI~ttn~~-- 232 (371)
.. ....|+.|. +++||||||..| +..+|..||+.|+... .. +++..+.+|+||++||..
T Consensus 222 GA~~~r~G~fE~A~---GGTLfLDEI~~m----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~ 288 (464)
T COG2204 222 GAITRRIGRFEQAN---GGTLFLDEIGEM----------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE 288 (464)
T ss_pred CcccccCcceeEcC---CceEEeeccccC----------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH
Confidence 11 123455554 899999999999 8899999999998543 22 334567799999999984
Q ss_pred -----CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 233 -----WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 233 -----~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
..+-+.|.-|+ .++.+..|+..||.+-+..++..+-.. .-.+......++++..+..|
T Consensus 289 ~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~----------------~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 289 EEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKR----------------FAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred HHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHH----------------HHHHcCCCCCCCCHHHHHHH
Confidence 12334444577 778999999999998554444332110 00011112345666666666
Q ss_pred HHHHHHHHHHHHhh
Q psy6716 308 CRDAAFMNLRRYLN 321 (371)
Q Consensus 308 ~~~a~~~~~~~~~~ 321 (371)
..+.|..++|+..+
T Consensus 352 ~~y~WPGNVREL~N 365 (464)
T COG2204 352 LAYDWPGNVRELEN 365 (464)
T ss_pred HhCCCChHHHHHHH
Confidence 66666666666543
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.91 E-value=2.9e-23 Score=188.79 Aligned_cols=215 Identities=18% Similarity=0.229 Sum_probs=159.9
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcC----CCCccEEEEcCCCchHHHHHHHHHHHcC-------CCeEEEecccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLR----RPWKGVLLVGPPGTGKTMLAKAAATETK-------SNFFNITSSTL 151 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~----~~~~~vLl~Gp~GtGKt~la~~la~~~~-------~~~~~v~~~~l 151 (371)
+++|++++|+++.+.+.+. ..+..+...+ .+..+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~-~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALL-LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHH-HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 5899999999999987763 3334444333 2445899999999999999999887652 37999999998
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
...+.|........++..+. +++|||||++.|.+.+. ........+..|+..|+.. ..+++||++++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-~~~~~~~~~~~Ll~~le~~--------~~~~~vI~a~~~ 169 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENQ--------RDDLVVILAGYK 169 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-ccchHHHHHHHHHHHHhcC--------CCCEEEEEeCCc
Confidence 88888887777777777665 79999999999864322 2234567788888888643 246788887764
Q ss_pred C--C---CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH-------ccCC
Q psy6716 232 P--W---DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER-------LEGY 299 (371)
Q Consensus 232 ~--~---~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-------~~g~ 299 (371)
. + .+++++.+||...+++|+++.+++..|+..++.+.... .++.....++.+ ..--
T Consensus 170 ~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~------------l~~~a~~~L~~~l~~~~~~~~~G 237 (284)
T TIGR02880 170 DRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYR------------FSAEAEEAFADYIALRRTQPHFA 237 (284)
T ss_pred HHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccc------------cCHHHHHHHHHHHHHhCCCCCCC
Confidence 3 2 24799999999999999999999999999999886542 122234444443 2223
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 300 SSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 300 s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
+++.++++++.+....-.|....
T Consensus 238 N~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 238 NARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999988887777544
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.91 E-value=1.2e-22 Score=183.44 Aligned_cols=217 Identities=19% Similarity=0.237 Sum_probs=157.1
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhh-cC--CCCccEEEEcCCCchHHHHHHHHHHHc-------CCCeEEEeccc
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDK-LR--RPWKGVLLVGPPGTGKTMLAKAAATET-------KSNFFNITSST 150 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~--~~~~~vLl~Gp~GtGKt~la~~la~~~-------~~~~~~v~~~~ 150 (371)
+++++|++++|++|++.+.++......... .. ....+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 567999999999999998776443222221 11 223579999999999999999999864 23788899999
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+.+.++|+....+..+|..+. ++||||||+|.|.... ........+..|+..++... .++++|+++.
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~--~~~~~~~~i~~Ll~~~e~~~--------~~~~vila~~ 151 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG--EKDFGKEAIDTLVKGMEDNR--------NEFVLILAGY 151 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC--ccchHHHHHHHHHHHHhccC--------CCEEEEecCC
Confidence 999999998888888887765 7899999999996421 11223456777888876542 3455665554
Q ss_pred CCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc---------
Q psy6716 231 FPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL--------- 296 (371)
Q Consensus 231 ~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--------- 296 (371)
..+ .+++++.+||...+.+|.++.+++.+|++.++...+.. .++..+..++...
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~------------l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYK------------LTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCc------------cCHHHHHHHHHHHHHHHhccCC
Confidence 322 36789999998899999999999999999999876542 2222344554321
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 297 EGYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 297 ~g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
..-+++.+.++++.|......|.+..
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 12367889999998887777776543
No 42
>KOG0742|consensus
Probab=99.90 E-value=2.3e-22 Score=181.85 Aligned_cols=227 Identities=22% Similarity=0.360 Sum_probs=163.4
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
....+++++=.....++|.+.....-.. +.-..|.++||+|||||||||++||.||..+|..+-.+...++... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 3445777777777777777665322111 0112566889999999999999999999999999887777765432 2
Q ss_pred chHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCCCCh--hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 157 GDSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRSTST--DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
...-..++.+|+-++... +-+|||||.|.++..+.... +..+..++.||-.- + ....+++++.+||+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT------G--dqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------G--DQSRDIVLVLATNRPG 496 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh------c--ccccceEEEeccCCcc
Confidence 245567889999998776 45889999999987665432 44455555555422 1 1245788899999999
Q ss_pred CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchh--------------hhhhcccCCCcccHHHHHHHccCC
Q psy6716 234 DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVN--------------IEVLNVKVDKDVNIEVLAERLEGY 299 (371)
Q Consensus 234 ~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~la~~~~g~ 299 (371)
.+|.++-+|++.+++||+|..+||..++..|+.++-...... +......+..+.-+.+.|+.|+||
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999998876432221 111122223445567889999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy6716 300 SSADITIVCRDAAFMNL 316 (371)
Q Consensus 300 s~~di~~l~~~a~~~~~ 316 (371)
||++|..|+--....++
T Consensus 577 SGREiakLva~vQAavY 593 (630)
T KOG0742|consen 577 SGREIAKLVASVQAAVY 593 (630)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999864433333
No 43
>KOG0736|consensus
Probab=99.89 E-value=2.3e-22 Score=194.30 Aligned_cols=221 Identities=22% Similarity=0.364 Sum_probs=175.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+...|..|+.++|+|||+-++|.+..+..++.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge- 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE- 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch-
Confidence 4699999999999999999999999999999999999988888999999999999999999999999999986655543
Q ss_pred hhhhhHHHHHHHhh--cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcc
Q psy6716 196 VTRRMKSELLCQMD--GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKD 273 (371)
Q Consensus 196 ~~~~~~~~ll~~l~--~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~ 273 (371)
..+++..+-..+. ... ....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+|+++|+....+
T Consensus 511 -d~rl~~~i~~~ls~e~~~-----~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~--- 581 (953)
T KOG0736|consen 511 -DARLLKVIRHLLSNEDFK-----FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL--- 581 (953)
T ss_pred -hHHHHHHHHHHHhccccc-----CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc---
Confidence 2333333322222 122 13568999999999999999999998899999999999999999999998877
Q ss_pred hhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCC---cccccccccHHHHHHHHH
Q psy6716 274 VNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIP---DKELDKAIVQADFDEAVR 350 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~d~~~al~ 350 (371)
..++....+|.++.||+.+++..++..+-..+..+..+.......+... ..-....++++||.+|+.
T Consensus 582 ----------n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals 651 (953)
T KOG0736|consen 582 ----------NQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS 651 (953)
T ss_pred ----------chHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH
Confidence 6788899999999999999999999887444444443332111111111 111235799999999999
Q ss_pred hCCCCC
Q psy6716 351 NCPKTV 356 (371)
Q Consensus 351 ~~~~~~ 356 (371)
+++.+.
T Consensus 652 ~~~~~f 657 (953)
T KOG0736|consen 652 RLQKEF 657 (953)
T ss_pred HHHHhh
Confidence 876544
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=2.4e-22 Score=171.25 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=132.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
...++++++|++.++..+.-++.. ....+.+..++|||||||+|||++|+.||++++.+|...+...+.. .
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~a-------a~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRA-------AKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHH-------HHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCCCHHHccCcHHHHhhhHHHHHH-------HHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 344899999999999998876621 1222344568999999999999999999999999998887755422 1
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCC-------CCCCCEEEE
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNE-------DPNKSVLIL 226 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~-------~~~~~v~vI 226 (371)
++ +..++... ..+.||||||||.+ ....+..|+..|+...-. +.. -+-.+..+|
T Consensus 90 ~d----l~~il~~l--~~~~ILFIDEIHRl----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 GD----LAAILTNL--KEGDILFIDEIHRL----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HH----HHHHHHT----TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HH----HHHHHHhc--CCCcEEEEechhhc----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11 22222222 24679999999999 788888999999865421 111 112467889
Q ss_pred eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 227 AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
++|++...+.+++++||..+..+..++.++...|++......++. .++....++|.++.| +|+-...
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~------------i~~~~~~~Ia~rsrG-tPRiAnr 220 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE------------IDEDAAEEIARRSRG-TPRIANR 220 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E------------E-HHHHHHHHHCTTT-SHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC------------cCHHHHHHHHHhcCC-ChHHHHH
Confidence 999999999999999998888999999999999999888877764 345567899999998 8887777
Q ss_pred HHHH
Q psy6716 307 VCRD 310 (371)
Q Consensus 307 l~~~ 310 (371)
+++.
T Consensus 221 ll~r 224 (233)
T PF05496_consen 221 LLRR 224 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 45
>KOG0744|consensus
Probab=99.89 E-value=7.4e-23 Score=179.97 Aligned_cols=248 Identities=25% Similarity=0.308 Sum_probs=176.6
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcC---------CCeEEEec
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETK---------SNFFNITS 148 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~---------~~~~~v~~ 148 (371)
-|+.++--..+|++|..++...+...+...... ...+-+|++||||||||+|++++|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 356666677889999888755443332222111 2335599999999999999999999863 35789999
Q ss_pred ccccccccchHHHHHHHHHHHHHHhC---Cc--EEEeccchhhccCCCC-----ChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 149 STLTSKWYGDSEKLIRLLFLLAKELA---PS--IVFFDEIDSMCSHRST-----STDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 149 ~~l~~~~~g~~~~~~~~~~~~a~~~~---~~--il~lDeid~l~~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
..+.++|+++..+.+..+|+.....- ++ .++|||++.|+..|.. .+...-++++++|.+||.+..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~----- 294 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR----- 294 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-----
Confidence 99999999999999999998886552 33 5679999999865522 123345889999999999886
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcch---hhhhhc--ccCCCcccHHHHH
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDV---NIEVLN--VKVDKDVNIEVLA 293 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~la 293 (371)
..+|++++|+|-.+.+|.++.+|-+-..++.+|+...|.+|++.++...--..-+ .++.+. .....+.....++
T Consensus 295 -~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~ 373 (423)
T KOG0744|consen 295 -YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI 373 (423)
T ss_pred -CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH
Confidence 5689999999999999999999999999999999999999999988754321111 111111 1112223333444
Q ss_pred HH-ccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 294 ER-LEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 294 ~~-~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
.. +.|.||+.|+.|=--|...-.+ ..+++.++|..|+-..
T Consensus 374 ~~~~~gLSGRtlrkLP~Laha~y~~-------------------~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 374 ELSTVGLSGRTLRKLPLLAHAEYFR-------------------TFTVDLSNFLLALLEA 414 (423)
T ss_pred HHhhcCCccchHhhhhHHHHHhccC-------------------CCccChHHHHHHHHHH
Confidence 44 3788998887765443322111 1378889998887654
No 46
>KOG0735|consensus
Probab=99.88 E-value=1.2e-21 Score=187.68 Aligned_cols=211 Identities=23% Similarity=0.318 Sum_probs=171.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
..++||+||+|+|||.||++++++.. .++..++|+.+.+..+....+.++.+|..+.+++|+||+||++|.|++..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 46799999999999999999999874 46778999999988888889999999999999999999999999999832
Q ss_pred CC---ChhhhhhhHHHHHHH-hhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHH
Q psy6716 191 ST---STDVTRRMKSELLCQ-MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 191 ~~---~~~~~~~~~~~ll~~-l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~ 264 (371)
.. +.+.....+..++.. +..+.. .+..+.+|++.+....+++.|.+ +|+.++.+|.|...+|.+|++.+
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~-----~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLK-----RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTI 585 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHc-----cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHH
Confidence 22 123444455555543 333332 24568999999999999999988 89999999999999999999999
Q ss_pred HhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHH
Q psy6716 265 LQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQAD 344 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 344 (371)
+++.... ....+++-++..|+||.+.|+..++++|...++.+.++..+ ..+|.++
T Consensus 586 ~s~~~~~------------~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~-------------klltke~ 640 (952)
T KOG0735|consen 586 FSKNLSD------------ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGP-------------KLLTKEL 640 (952)
T ss_pred HHhhhhh------------hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCc-------------ccchHHH
Confidence 9876532 33445667999999999999999999999999965544332 2689999
Q ss_pred HHHHHHhCCCC
Q psy6716 345 FDEAVRNCPKT 355 (371)
Q Consensus 345 ~~~al~~~~~~ 355 (371)
|.++++.+.|.
T Consensus 641 f~ksL~~F~P~ 651 (952)
T KOG0735|consen 641 FEKSLKDFVPL 651 (952)
T ss_pred HHHHHHhcChH
Confidence 99999998663
No 47
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.4e-21 Score=157.94 Aligned_cols=129 Identities=41% Similarity=0.634 Sum_probs=113.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCC-CChh
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRS-TSTD 195 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~-~~~~ 195 (371)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+.++.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998888999999999999999887 99999999999998762 2335
Q ss_pred hhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHH-hcccceEEecC
Q psy6716 196 VTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFR-RRLEKRIYVPI 251 (371)
Q Consensus 196 ~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~-~rf~~~i~~~~ 251 (371)
.....+..|+..++.... ...+++||+|||.++.+++.++ +||+..+++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~-----~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSS-----KNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTT-----TSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeeccccccc-----ccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 667788889999887664 2357999999999999999999 99999998874
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.86 E-value=1.2e-19 Score=169.37 Aligned_cols=220 Identities=19% Similarity=0.147 Sum_probs=155.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccch
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGD 158 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~ 158 (371)
..|++++|++..++.+...+.. ....+.++.++||+||||||||++|+++|++++..+..++...+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~-------~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~----- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEA-------AKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK----- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHH-------HHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-----
Confidence 4789999999999999887722 1222345678999999999999999999999999887766553321
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-----cCC-----CCCCCCEEEEee
Q psy6716 159 SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-----VSN-----EDPNKSVLILAA 228 (371)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~-----~~~~~~v~vI~t 228 (371)
...+..++... ..+++|||||||.+. ......|...++.... .+. .....++.+|++
T Consensus 90 -~~~l~~~l~~l--~~~~vl~IDEi~~l~----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 90 -PGDLAAILTNL--EEGDVLFIDEIHRLS----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred -hHHHHHHHHhc--ccCCEEEEecHhhcc----------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 11222233222 247899999999983 2233334444443211 000 001234678999
Q ss_pred cCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 229 TNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 229 tn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
|+.+..+++++++||...+.+++|+.+++.++++..+...+.. .++..++.+++.+.| +++.+..++
T Consensus 157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~------------~~~~~~~~ia~~~~G-~pR~a~~~l 223 (328)
T PRK00080 157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE------------IDEEGALEIARRSRG-TPRIANRLL 223 (328)
T ss_pred cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC------------cCHHHHHHHHHHcCC-CchHHHHHH
Confidence 9999999999999998889999999999999999988876653 344568899999987 678888888
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
+.++..+..+. ...|+.+++..+++.+.
T Consensus 224 ~~~~~~a~~~~-----------------~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 224 RRVRDFAQVKG-----------------DGVITKEIADKALDMLG 251 (328)
T ss_pred HHHHHHHHHcC-----------------CCCCCHHHHHHHHHHhC
Confidence 87765555431 12567777777776653
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=7.1e-20 Score=169.52 Aligned_cols=199 Identities=19% Similarity=0.169 Sum_probs=140.7
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchH
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDS 159 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~ 159 (371)
+|++++|++++++.|..++.. ......++.+++|+||||||||++|+++|++++.++..+..+.... .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~-------~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~-- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEA-------AKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG-- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHH-------HHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch--
Confidence 588999999999999988722 1222234467999999999999999999999998876665443221 11
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-----CC-----CCCCCCEEEEeec
Q psy6716 160 EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-----SN-----EDPNKSVLILAAT 229 (371)
Q Consensus 160 ~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~-----~~~~~~v~vI~tt 229 (371)
.+...+.. ...+.+|||||++.+. ...+..|+..++..... +. .....++.+|++|
T Consensus 71 --~l~~~l~~--~~~~~vl~iDEi~~l~----------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 71 --DLAAILTN--LEEGDVLFIDEIHRLS----------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred --hHHHHHHh--cccCCEEEEehHhhhC----------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11122222 1247899999999993 33344455555432210 00 0122347889999
Q ss_pred CCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 230 NFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 230 n~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
+.+..+++++++||...+.+++|+.+++.++++..+...+.. .++..++.+++.+.| +++.+..++.
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~------------~~~~al~~ia~~~~G-~pR~~~~ll~ 203 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE------------IEPEAALEIARRSRG-TPRIANRLLR 203 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC------------cCHHHHHHHHHHhCC-CcchHHHHHH
Confidence 999999999999998888999999999999999888765542 345567899999988 5688888888
Q ss_pred HHHHHHH
Q psy6716 310 DAAFMNL 316 (371)
Q Consensus 310 ~a~~~~~ 316 (371)
.++..+.
T Consensus 204 ~~~~~a~ 210 (305)
T TIGR00635 204 RVRDFAQ 210 (305)
T ss_pred HHHHHHH
Confidence 7765443
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.5e-19 Score=157.07 Aligned_cols=201 Identities=19% Similarity=0.181 Sum_probs=149.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
...|++++|+++++++|.-++. ..+..+...-++||+||||.|||++|+.+|++++..+-..+...+.. .|
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~-------AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--~g 92 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIK-------AAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--PG 92 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHH-------HHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--hh
Confidence 4478999999999999998883 22333455578999999999999999999999999987766655432 11
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc----------CCCCCCCCEEEEe
Q psy6716 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV----------SNEDPNKSVLILA 227 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~~~~v~vI~ 227 (371)
+ +..++.. ...+.||||||||.+ ...+-.-|.-.|+.+.-. .-+-+-.+.-+|+
T Consensus 93 D----laaiLt~--Le~~DVLFIDEIHrl----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 93 D----LAAILTN--LEEGDVLFIDEIHRL----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred h----HHHHHhc--CCcCCeEEEehhhhc----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 2 2222222 224689999999999 444455555666654321 1112345778899
Q ss_pred ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 228 ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 228 ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
+|.+...+...|++||+....+..++.++...|+......+++. .++....++|+++.| +|+-...|
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~------------i~~~~a~eIA~rSRG-TPRIAnRL 223 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE------------IDEEAALEIARRSRG-TPRIANRL 223 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC------------CChHHHHHHHHhccC-CcHHHHHH
Confidence 99999999999999999999999999999999999999887764 445567899999998 88877777
Q ss_pred HHHHHHHHH
Q psy6716 308 CRDAAFMNL 316 (371)
Q Consensus 308 ~~~a~~~~~ 316 (371)
+++..-.+.
T Consensus 224 LrRVRDfa~ 232 (332)
T COG2255 224 LRRVRDFAQ 232 (332)
T ss_pred HHHHHHHHH
Confidence 765444443
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=1.2e-19 Score=178.47 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=154.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v 146 (371)
...+|++++|++..++.++..+. +..+.++||+||||||||++|+++++.+ +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 34578999999999999986541 1234679999999999999999998742 3579999
Q ss_pred ecccc-------cccccchHHHHH---HHH----------HHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHH
Q psy6716 147 TSSTL-------TSKWYGDSEKLI---RLL----------FLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLC 206 (371)
Q Consensus 147 ~~~~l-------~~~~~g~~~~~~---~~~----------~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~ 206 (371)
+|... ....++.....+ ... ........+++||||||+.| +...++.|+.
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L----------~~~~q~~LL~ 197 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL----------HPVQMNKLLK 197 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC----------CHHHHHHHHH
Confidence 98642 111111100000 000 00112234789999999999 6778889998
Q ss_pred Hhhccccc--------C------------CCCCCCCEEEE-eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHH
Q psy6716 207 QMDGLASV--------S------------NEDPNKSVLIL-AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 207 ~l~~~~~~--------~------------~~~~~~~v~vI-~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
.|+..... . ....+.++++| +||+.++.+++++++|+ ..+.+++++.+++.++++..+
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHH
Confidence 88642110 0 01112344554 56678899999999999 678899999999999999999
Q ss_pred hcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHH
Q psy6716 266 QNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADF 345 (371)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 345 (371)
++.++. .++..++.++..+. +++++.++++.|...+..+. ...|+.+|+
T Consensus 277 ~k~~i~------------is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI 325 (531)
T TIGR02902 277 EKIGIN------------LEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-----------------RKRILAEDI 325 (531)
T ss_pred HHcCCC------------cCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHH
Confidence 876652 34445677777654 78999999999887665432 236999999
Q ss_pred HHHHHhC
Q psy6716 346 DEAVRNC 352 (371)
Q Consensus 346 ~~al~~~ 352 (371)
..++..-
T Consensus 326 ~~vl~~~ 332 (531)
T TIGR02902 326 EWVAENG 332 (531)
T ss_pred HHHhCCc
Confidence 9998743
No 52
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=1e-20 Score=178.30 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=142.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEeccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNITSSTLT 152 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~~~~l~ 152 (371)
....+|++|+|.++.+.++.+.+ ++.+..+.+|||.|++||||..+|++||+.+.+ ||+.+||+.++
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~a----------kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELA----------KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHH----------HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34568999999999999999888 666677788999999999999999999998754 99999999987
Q ss_pred cccc-----c--------hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc--ccC-C
Q psy6716 153 SKWY-----G--------DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA--SVS-N 216 (371)
Q Consensus 153 ~~~~-----g--------~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~-~ 216 (371)
..++ | .........|+.|. +++||||||..| +..+|.+||+.|+... ..+ .
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgem----------pl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEM----------PLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccC----------CHHHHHHHHHHHhhceEEecCCC
Confidence 5432 2 22222345677766 899999999999 8899999999998543 233 2
Q ss_pred CCCCCCEEEEeecCCCCCccHHHHh---------cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 217 EDPNKSVLILAATNFPWDLDEAFRR---------RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 217 ~~~~~~v~vI~ttn~~~~l~~~l~~---------rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
...+.+|+|||+||+. +...+.. |+ .++.+..|+..+|.+-+..+...+--.
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k---------------- 436 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDK---------------- 436 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHH----------------
Confidence 3556799999999984 4333332 66 568889999999987554433322100
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
.-....+...|.++..+..|.+++|..++|+.
T Consensus 437 ~s~~~~~~v~~ls~~a~~~L~~y~WPGNVREL 468 (560)
T COG3829 437 FSRRYGRNVKGLSPDALALLLRYDWPGNVREL 468 (560)
T ss_pred HHHHcCCCcccCCHHHHHHHHhCCCCchHHHH
Confidence 00111122335566666666666666666554
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=2.6e-18 Score=163.38 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=138.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.++..|...+. . +..++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~----------~-~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALK----------S-GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 3479999999999999998872 2 2334569999999999999999999988652
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.+++..- .....++.+...+.. ....|++|||+|.| ....++.||..|+
T Consensus 83 ~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L----------s~~A~NALLKtLE 146 (484)
T PRK14956 83 EITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHML----------TDQSFNALLKTLE 146 (484)
T ss_pred HHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc----------CHHHHHHHHHHhh
Confidence 222222110 011223333333322 23459999999999 6677889998885
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
. ++.++++|++|+.+..+.+.+++|+ ..+.+..++.++....++..+...++. .++..+
T Consensus 147 E--------Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~------------~e~eAL 205 (484)
T PRK14956 147 E--------PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQ------------YDQEGL 205 (484)
T ss_pred c--------CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 4 3458888889998999999999999 678999999999999999998876653 355668
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..||+.+.| +.++.-.+++.+.
T Consensus 206 ~~Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 206 FWIAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHcCC-hHHHHHHHHHHHH
Confidence 899999998 7787777776654
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.81 E-value=1.4e-18 Score=177.78 Aligned_cols=245 Identities=22% Similarity=0.313 Sum_probs=169.9
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v 146 (371)
..-.+++++|.++.+..+.+.+. + ....+++|+||||||||++|+++|..+ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~----------~--~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC----------R--RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh----------c--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34467889999999998776662 1 233679999999999999999999986 6678899
Q ss_pred eccccc--ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEE
Q psy6716 147 TSSTLT--SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVL 224 (371)
Q Consensus 147 ~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~ 224 (371)
+++.+. .++.|+.+..++.++..+....++||||||+|.+.+.....++ .....+.|...+. .+.+.
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-~~~~~~~L~~~l~----------~g~i~ 313 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-SMDASNLLKPALS----------SGKLR 313 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-cHHHHHHHHHHHh----------CCCeE
Confidence 988877 4688999999999999998778899999999999875432221 1223333444442 35788
Q ss_pred EEeecCCC-----CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCC
Q psy6716 225 ILAATNFP-----WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGY 299 (371)
Q Consensus 225 vI~ttn~~-----~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~ 299 (371)
+|++||.. ...++++.|||. .+.++.|+.+++..|++.....+..... +. ..+..+..++..+..|
T Consensus 314 ~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~-------v~-i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 314 CIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHH-------VK-YSDEALEAAVELSARY 384 (731)
T ss_pred EEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccC-------cc-cCHHHHHHHHHhhhcc
Confidence 99999864 257899999995 7999999999999999987765321110 01 3455677778777666
Q ss_pred C-----HHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC----CCCHHHHHHHHH
Q psy6716 300 S-----SADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK----TVRPEDAEKFTD 366 (371)
Q Consensus 300 s-----~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~----~~~~~~~~~~~~ 366 (371)
- |.-.-.++++|......+. .. .....++.+|+..++..+.. .++.++...+..
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~~--~~-----------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~ 447 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLRP--KA-----------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKN 447 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcCc--cc-----------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHH
Confidence 4 3334455665543221110 00 00236899999999998742 234445555443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.5e-18 Score=157.88 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=130.3
Q ss_pred CCCcccccChHHHH---HHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAK---DLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
..++++++|++... .-|+..+ .. ....+++||||||||||++|+.||...+.+|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v----------~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV----------EA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH----------hc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc----
Confidence 34678888888775 3344444 11 23367999999999999999999999999999988654
Q ss_pred ccchHHHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 155 WYGDSEKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
...+.++.+++.++... ..|||||||+++ .+.-|..||-.++ ++.+++|++|.
T Consensus 84 ---~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf----------nK~QQD~lLp~vE----------~G~iilIGATT 140 (436)
T COG2256 84 ---SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF----------NKAQQDALLPHVE----------NGTIILIGATT 140 (436)
T ss_pred ---ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc----------Chhhhhhhhhhhc----------CCeEEEEeccC
Confidence 34556788888886554 479999999999 6677788888774 45677776653
Q ss_pred -CC-CCccHHHHhcccceEEecCCCHHHHHHHHHHHHh--cCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 231 -FP-WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQ--NVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 231 -~~-~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
.| -.+.+++++|+ .++.+.+.+.++...++..-+. ..++.. .....++...+.++..+.| |.+.
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~-------~~~~i~~~a~~~l~~~s~G----D~R~ 208 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGG-------QIIVLDEEALDYLVRLSNG----DARR 208 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc-------ccccCCHHHHHHHHHhcCc----hHHH
Confidence 33 46899999999 7899999999999999988443 222210 0001234456777777776 5555
Q ss_pred HHHH
Q psy6716 307 VCRD 310 (371)
Q Consensus 307 l~~~ 310 (371)
+++.
T Consensus 209 aLN~ 212 (436)
T COG2256 209 ALNL 212 (436)
T ss_pred HHHH
Confidence 5553
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=2.1e-18 Score=168.00 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=138.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++|+|++.+++.|...+. .++.++.+||+||+|+|||++|+.+++.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 4479999999999999999882 2234467899999999999999999998865
Q ss_pred -------------CeEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHH
Q psy6716 142 -------------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSEL 204 (371)
Q Consensus 142 -------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~l 204 (371)
.+++++...- .....++.+...... ....|++|||+|.| +...++.|
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------s~~AaNAL 144 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------TNHAFNAM 144 (700)
T ss_pred cHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc----------CHHHHHHH
Confidence 1222222110 112223344433322 23469999999999 56678889
Q ss_pred HHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCC
Q psy6716 205 LCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVD 284 (371)
Q Consensus 205 l~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
|+.|+. ++.++++|.+||.++.|.+.+++|| ..+.|..++.++..+.++.++...++. .
T Consensus 145 LKTLEE--------PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~------------~ 203 (700)
T PRK12323 145 LKTLEE--------PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIA------------H 203 (700)
T ss_pred HHhhcc--------CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCC------------C
Confidence 998864 3457888889999999999999999 779999999999999999888766652 2
Q ss_pred CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 285 KDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 285 ~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
++..+..|++.+.| ++++...++..+.
T Consensus 204 d~eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 204 EVNALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 33457788888887 8888888877654
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=4.4e-18 Score=167.74 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=139.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|+..+. .+..++.+||+||+|||||++|+.+++.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 3479999999999999998872 22344678999999999999999999987652
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
+++++.++ ......++.+++.+... ...|+||||+|.| +...++.||+.|+
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L----------T~~A~NALLKtLE 144 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML----------TNHAFNAMLKTLE 144 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC----------CHHHHHHHHHHHH
Confidence 22222211 01112244444443321 2469999999999 5566788888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. ..++.+|.+||.++.|.+.+++|| ..+.|..++.++....++.++...++. .++..+
T Consensus 145 EP--------P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~------------id~eAL 203 (830)
T PRK07003 145 EP--------PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIA------------FEPQAL 203 (830)
T ss_pred hc--------CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 53 447889999999999999999999 779999999999999999998877653 345568
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..|++.+.| +.++..+++..+.
T Consensus 204 ~lIA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 204 RLLARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 889999988 6777777766655
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=5.7e-18 Score=163.49 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=131.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|+..+. .+..++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4579999999999999988772 1234467999999999999999999998764
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.++++.- .....++.+...+... ...+|+|||+|.| ....++.|+..++
T Consensus 79 ~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L----------t~~a~~~LLk~LE 142 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML----------TKEAFNALLKTLE 142 (472)
T ss_pred HHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh----------HHHHHHHHHHHHH
Confidence 2344433211 1122334444433322 2469999999999 4556778888876
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+++|++|+.+..+++++.+|+ ..+.+++|+.++...+++..+...+.. .++..+
T Consensus 143 ~p--------~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~------------i~~eal 201 (472)
T PRK14962 143 EP--------PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIE------------IDREAL 201 (472)
T ss_pred hC--------CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 346677777777889999999999 679999999999999999988766543 345568
Q ss_pred HHHHHHccCCCHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~ 310 (371)
+.|+..+.| +.+++.+.++.
T Consensus 202 ~~Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 202 SFIAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHHHHHhCC-CHHHHHHHHHH
Confidence 889988876 55555454443
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=3.9e-18 Score=175.32 Aligned_cols=217 Identities=19% Similarity=0.200 Sum_probs=145.1
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc---------c
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT---------S 153 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~---------~ 153 (371)
+++|++.+++.+.+++..+.. ........+||+||||||||++|+++|+.++.+++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKL------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHh------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 478999999999998743211 1112234699999999999999999999999999999876542 2
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc---c----CCCCCCCCEEEE
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS---V----SNEDPNKSVLIL 226 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~---~----~~~~~~~~v~vI 226 (371)
.|.|.....+...+..+....| ||+|||||.+.+...+. ..+.|+..|+.... . .......++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC------HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 4555555556666766655444 89999999997643222 24566766653110 0 001123578999
Q ss_pred eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhc-----CCCCcchhhhhhcccCCCcccHHHHHH-HccCCC
Q psy6716 227 AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQN-----VKVDKDVNIEVLNVKVDKDVNIEVLAE-RLEGYS 300 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~g~s 300 (371)
+|||..+.+++++++|| .++.++.|+.+++..|++.++.. .++.. ..+. .++..+..+++ .+..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~------~~~~-~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKP------DELK-ITDEALLLLIKYYTREAG 539 (775)
T ss_pred EecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCc------ceEE-ECHHHHHHHHHhcChhcC
Confidence 99999999999999999 57999999999999999887732 12110 0011 23334555555 333344
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6716 301 SADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 301 ~~di~~l~~~a~~~~~~~~~ 320 (371)
.++|+..+........++.+
T Consensus 540 ~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 540 VRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 56777766665555555443
No 60
>KOG0743|consensus
Probab=99.80 E-value=1.9e-18 Score=159.71 Aligned_cols=203 Identities=22% Similarity=0.315 Sum_probs=156.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCC-CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRP-WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
.+|+.++--.+.++.|.+.+.......+.+++.|.+ .+|.|||||||||||+++.|+|+.++..++.+..++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 567888889999999999999999999999998866 468999999999999999999999999999887766532
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh------h--hhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST------D--VTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~------~--~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
... ++.++.... ..+||+|.+||.-+..+.... . ...-.++.||+.+|++-+.. ...-+||.||
T Consensus 274 -n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc----g~ERIivFTT 345 (457)
T KOG0743|consen 274 -DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC----GDERIIVFTT 345 (457)
T ss_pred -cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC----CCceEEEEec
Confidence 222 455544433 468999999999765322111 1 23467888999999887643 2244788999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC--CCHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG--YSSADIT 305 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g--~s~~di~ 305 (371)
|.++.|||+|+| |++.+|++..-+...-+.++..|+.... +..-+.++.+...+ .||+|+.
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---------------~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---------------DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---------------CcchhHHHHHHhhcCccCHHHHH
Confidence 999999999999 9999999999999999999999986521 12234455555444 4899887
Q ss_pred HHH
Q psy6716 306 IVC 308 (371)
Q Consensus 306 ~l~ 308 (371)
...
T Consensus 411 e~l 413 (457)
T KOG0743|consen 411 EEL 413 (457)
T ss_pred HHH
Confidence 554
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=9.6e-18 Score=163.75 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=139.1
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|...+ . .+..++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI----------~-~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSAL----------E-RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------H-cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 347999999999999999888 2 2244577999999999999999999998765
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.+++++- .....++.+...+.. ....|++|||+|.| +...++.|+..|+
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L----------S~~A~NALLKtLE 143 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML----------STHSFNALLKTLE 143 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHh
Confidence 2333333211 012223444433322 23469999999999 5566788888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.+..+.+.+++|+ ..+.+.+++.++....++..+.+.++. .++..+
T Consensus 144 EP--------P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~------------id~eAL 202 (702)
T PRK14960 144 EP--------PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIA------------ADQDAI 202 (702)
T ss_pred cC--------CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 346677888888888999999999 779999999999999999999877663 445568
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..+|+.+.| +.+++..++..+.
T Consensus 203 ~~IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 203 WQIAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 889999887 8888888876654
No 62
>KOG2004|consensus
Probab=99.78 E-value=2.2e-18 Score=165.85 Aligned_cols=172 Identities=23% Similarity=0.304 Sum_probs=130.8
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc---------
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT--------- 152 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~--------- 152 (371)
+|-.|++++|+++.+++..-.. +....++-++|+||||+|||+++|+||+.+++.|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 4569999999999999843211 1112234588999999999999999999999999999877654
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-------CCCCCCCCEEE
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-------SNEDPNKSVLI 225 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~v~v 225 (371)
..|+|.....+-..++......| +++|||||.+...-++.+ .++||..||--+.. .-...-..|++
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP------asALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP------ASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh------HHHHHHhcChhhccchhhhccccccchhheEE
Confidence 46888888777777777777666 889999999974333322 24556555521110 00112458999
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhc
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQN 267 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~ 267 (371)
|||+|..+.++++|++|+ ++|.++-+..+|..+|.+.|+-.
T Consensus 558 icTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred EEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 999999999999999999 88999999999999999988854
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.6e-17 Score=156.82 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.+...+ .. +..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~----------~~-~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGL----------SL-GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHH----------Hc-CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 357999999999999999887 22 2344678999999999999999999987542
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++++. ......++.+...+... ...|++|||+|.+ +...++.|+..++
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l----------~~~a~naLLk~lE 144 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML----------SRHSFNALLKTLE 144 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc----------CHHHHHHHHHHHh
Confidence 11121110 01122244444443322 2359999999999 4556777888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.++.+.+.+.+|+ ..+.+++|+.++..+++...+...+.. .++..+
T Consensus 145 e~--------~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~------------i~~~al 203 (363)
T PRK14961 145 EP--------PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESID------------TDEYAL 203 (363)
T ss_pred cC--------CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 346677777788888999999999 679999999999999999988876642 345567
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..++..+.| +++++..+++.++
T Consensus 204 ~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 204 KLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 888988887 7888888777664
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=4.5e-17 Score=161.10 Aligned_cols=186 Identities=21% Similarity=0.232 Sum_probs=138.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++|+|++.+++.|...+ .. +..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l----------~~-~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANAL----------DL-GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------Hc-CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 347999999999999999888 22 2344568999999999999999999987652
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++...- .....++.+...+... ...|++|||+|.| +...++.||..|+
T Consensus 81 ~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L----------s~~a~NALLKtLE 144 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE 144 (647)
T ss_pred HHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC----------CHHHHHHHHHHHH
Confidence 222322210 0112233443333221 2459999999999 6678899999996
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +.++++|.+|+.+..+.+.+++|+ ..+.|..++.++....+...+...++. .++..+
T Consensus 145 EP--------p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~------------~e~~aL 203 (647)
T PRK07994 145 EP--------PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIP------------FEPRAL 203 (647)
T ss_pred cC--------CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 457788888888999999999999 789999999999999999988766552 345567
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..++..+.| +.++...++..+.
T Consensus 204 ~~Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 204 QLLARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 889989887 7888888876654
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1e-17 Score=161.99 Aligned_cols=170 Identities=23% Similarity=0.249 Sum_probs=132.5
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc--------
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT-------- 152 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~-------- 152 (371)
.|-.|++++|+++.+++... +... ....-++|+||||+|||+++++||+.+++.|++++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~-------~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQ-------KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHH-------HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 34699999999999998432 2222 1223478999999999999999999999999999877654
Q ss_pred -ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-------CCCCCCCCEE
Q psy6716 153 -SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-------SNEDPNKSVL 224 (371)
Q Consensus 153 -~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~v~ 224 (371)
..|+|.....+-.....+....| +++|||||.|..+-.+.+ .++||..||--+.. .-...-.+|+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP------aSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh------HHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 46888888888788888887776 889999999976544332 34667776621110 0012346899
Q ss_pred EEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHh
Q psy6716 225 ILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 225 vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~ 266 (371)
+|+|+|..+.++.+|++|+ ++|.++-++.+|..+|.+.|+-
T Consensus 469 FiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 9999999999999999999 8899999999999999988774
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=9.9e-18 Score=163.46 Aligned_cols=186 Identities=16% Similarity=0.168 Sum_probs=138.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|...+. . +..++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~----------~-~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALD----------Q-QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHH----------h-CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 3479999999999999999882 2 2344678999999999999999999988652
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
+++++.+.- .....++.+...+... ...|++|||+|.| +...++.|+..|+
T Consensus 81 ~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l----------s~~a~naLLk~LE 144 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML----------SGHSFNALLKTLE 144 (509)
T ss_pred HHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhc----------CHHHHHHHHHHHh
Confidence 333433210 1122234444433321 2359999999999 5566788988886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++....++..+...++. .++..+
T Consensus 145 ep--------p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~------------~~~~al 203 (509)
T PRK14958 145 EP--------PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVE------------FENAAL 203 (509)
T ss_pred cc--------CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 53 446778888888889999999999 778999999999999999898877653 345567
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..+++.+.| +.+++..+++.+.
T Consensus 204 ~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 204 DLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHH
Confidence 888888876 8888888887664
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=5e-17 Score=163.25 Aligned_cols=192 Identities=19% Similarity=0.169 Sum_probs=138.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-------eEEE-ecc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------FFNI-TSS 149 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------~~~v-~~~ 149 (371)
..+|++|+|++.++..|+..+. . ++.++.+||+||+|||||++||++|+.+++. +..+ +|.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~----------~-~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALT----------Q-QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------h-CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 3579999999999999998872 2 2344667999999999999999999998663 1110 000
Q ss_pred cccccc------c-c---hHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 150 TLTSKW------Y-G---DSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 150 ~l~~~~------~-g---~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
.+.... + + .....++.+...+.. ....|+||||+|.| ....++.||..|+..
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L----------T~eAqNALLKtLEEP---- 146 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML----------SRSSFNALLKTLEEP---- 146 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHhcc----
Confidence 000000 0 0 111223444433322 12469999999999 677889999999643
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
+.++++|++|+.+..+.+.+++|+ ..+.|.+++.++....+++.+...++. ..+..+..|+..
T Consensus 147 ----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~------------~edeAL~lIA~~ 209 (944)
T PRK14949 147 ----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLP------------FEAEALTLLAKA 209 (944)
T ss_pred ----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHH
Confidence 457788888888889999999999 779999999999999999988765542 344567889999
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy6716 296 LEGYSSADITIVCRDAA 312 (371)
Q Consensus 296 ~~g~s~~di~~l~~~a~ 312 (371)
+.| +++++..++..+.
T Consensus 210 S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 210 ANG-SMRDALSLTDQAI 225 (944)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 8888888887655
No 68
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=4.2e-17 Score=158.43 Aligned_cols=220 Identities=18% Similarity=0.244 Sum_probs=143.2
Q ss_pred CCCCccccc-Ch--HHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEec
Q psy6716 77 TNVKWADIA-GL--DDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITS 148 (371)
Q Consensus 77 ~~~~~~~i~-G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~ 148 (371)
+..+|++++ |. ..+...+..... ..+...++++||||+|+|||+|++++++++ +..++++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~----------~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAE----------NPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHh----------CcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 556788853 43 224444444331 112333579999999999999999999986 456888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 149 STLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 149 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
.++...+...........|.. ....+.+|+|||++.+.++ ...+..|+..++..... ...+||++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~-~~~~~dlLiiDDi~~l~~~--------~~~~~~l~~~~n~l~~~------~~~iiits 251 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKE-KYRSVDVLLIDDIQFLAGK--------ERTQEEFFHTFNALHEA------GKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHH-HHhcCCEEEEehhhhhcCC--------HHHHHHHHHHHHHHHHC------CCcEEEEC
Confidence 887655443322111112222 1224779999999998543 12345566666554431 23355555
Q ss_pred cCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHH
Q psy6716 229 TNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSAD 303 (371)
Q Consensus 229 tn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~d 303 (371)
...|.. +++.+.+||. ..+.+.+|+.++|..|++..+...++. .++..++.||.++.| +.+.
T Consensus 252 ~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~------------l~~e~l~~ia~~~~~-~~R~ 318 (450)
T PRK00149 252 DRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID------------LPDEVLEFIAKNITS-NVRE 318 (450)
T ss_pred CCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHcCcCC-CHHH
Confidence 555544 6788999995 578999999999999999999865542 455568999999886 8888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 304 ITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 304 i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
|..+++.....+.... .+|+.+.+.++++.+
T Consensus 319 l~~~l~~l~~~~~~~~------------------~~it~~~~~~~l~~~ 349 (450)
T PRK00149 319 LEGALNRLIAYASLTG------------------KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHhhC------------------CCCCHHHHHHHHHHh
Confidence 8888876654443321 246666666666654
No 69
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=6.3e-19 Score=164.13 Aligned_cols=208 Identities=22% Similarity=0.291 Sum_probs=146.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~~~~l~~~ 154 (371)
...+..|+|.+.++.++.+.+ .........|||.|++||||..+||+||+.+.+ ||+.+||+.++..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i----------~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEI----------EVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHH----------HHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 446678999999999999988 445566678999999999999999999998854 9999999998754
Q ss_pred c-----cchHHHH-------HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc--cc-CCCCC
Q psy6716 155 W-----YGDSEKL-------IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA--SV-SNEDP 219 (371)
Q Consensus 155 ~-----~g~~~~~-------~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~--~~-~~~~~ 219 (371)
. +|....+ -..-|+.|. +++||||||..| +..+|.+||+.|+... .. +++..
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGel----------PL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGEL----------PLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecC---CCeEechhhccC----------CHHHHHHHHHHHhhcceeecCCCcee
Confidence 3 3322221 223344444 899999999999 8899999999998433 33 33455
Q ss_pred CCCEEEEeecCCCCCccHHHHh-ccc-------ceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 220 NKSVLILAATNFPWDLDEAFRR-RLE-------KRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 220 ~~~v~vI~ttn~~~~l~~~l~~-rf~-------~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
..+|+|||+||+ +|...+.. +|. .++.+..|+..||.+ +..+|+.++.... +..... .+..
T Consensus 356 kVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~----gr~~l~-ls~~ 428 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL----GRAILS-LSAE 428 (550)
T ss_pred EEEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhc----CCcccc-cCHH
Confidence 679999999998 66666555 332 456677899998876 3344444332211 111112 2223
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
.++.+.++..--+-++++.++++|+..+
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 4566666654457799999999998866
No 70
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.76 E-value=8.2e-17 Score=154.60 Aligned_cols=173 Identities=18% Similarity=0.301 Sum_probs=119.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccccccccchHHH-HHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEK-LIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~-~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
..+++|+||+|+|||+|++++++++ +..++++++.++...+...... .........+ ...+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4579999999999999999999876 5678889888765543322211 1111222222 367999999999854
Q ss_pred CCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHH
Q psy6716 189 HRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTI 263 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~ 263 (371)
+ ...+..|+..++.... ....+||++...|.. +++.+.+||. ..+.+++|+.++|..|++.
T Consensus 214 ~--------~~~~~~l~~~~n~~~~------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 K--------ERTQEEFFHTFNALHE------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred C--------HHHHHHHHHHHHHHHH------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3 1234456666654433 123355555555543 5678899985 4789999999999999999
Q ss_pred HHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy6716 264 FLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~ 316 (371)
.+...++. .++..++.||.+..+ +.++|..+++.....+.
T Consensus 280 ~~~~~~~~------------l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 280 KAEEEGLE------------LPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHcCCC------------CCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 99876653 456668899999886 88888888876654443
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=3.1e-17 Score=157.75 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=141.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|...+ . .+..++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~----------~-~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAF----------T-LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------H-cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 357999999999999998877 2 2344578999999999999999999986532
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++++++++-. ....++.+...+... ...|++|||+|.| +...++.|+..|+
T Consensus 78 ~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L----------s~~A~NaLLK~LE 141 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHML----------SNSAFNALLKTLE 141 (491)
T ss_pred HHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhC----------CHHHHHHHHHHHh
Confidence 24455543211 123345555554432 2469999999999 5566788888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.++.+.+.+++|+ ..+.+..++.++....+...+.+.+.. .++..+
T Consensus 142 eP--------p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~------------i~~eAL 200 (491)
T PRK14964 142 EP--------APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIE------------HDEESL 200 (491)
T ss_pred CC--------CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 446777878888888999999999 779999999999999999999887753 455568
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
..+++.+.| +.+++..+++.+..
T Consensus 201 ~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 201 KLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHH
Confidence 889999976 88888888876653
No 72
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=5.5e-17 Score=164.24 Aligned_cols=240 Identities=18% Similarity=0.252 Sum_probs=161.0
Q ss_pred hhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------
Q psy6716 70 SEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---------- 139 (371)
Q Consensus 70 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---------- 139 (371)
.++......-.++.++|.++.+..+.+.+. + ....++||+||||||||++|+++|...
T Consensus 174 ~~l~~~a~~g~~~~liGR~~ei~~~i~iL~----------r--~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~ 241 (758)
T PRK11034 174 TNLNQLARVGGIDPLIGREKELERAIQVLC----------R--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_pred HhHHHHHHcCCCCcCcCCCHHHHHHHHHHh----------c--cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhc
Confidence 333333333456778999988888887662 2 223678999999999999999999864
Q ss_pred CCCeEEEeccccc--ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCC
Q psy6716 140 KSNFFNITSSTLT--SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNE 217 (371)
Q Consensus 140 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 217 (371)
+..++.++...+. ..+.|+.+..++.++..+....++||||||||.+++....... ...+.+.|...+.
T Consensus 242 ~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L~-------- 312 (758)
T PRK11034 242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLLS-------- 312 (758)
T ss_pred CCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHHh--------
Confidence 3455666655554 3567888888999999888888899999999999876542211 1122222222231
Q ss_pred CCCCCEEEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHH
Q psy6716 218 DPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVL 292 (371)
Q Consensus 218 ~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (371)
...+.+|++|+.++ ..|+++.||| ..+.++.|+.+++..|++.+...+.....+. ..+..+...
T Consensus 313 --~g~i~vIgATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~--------i~~~al~~a 381 (758)
T PRK11034 313 --SGKIRVIGSTTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVR--------YTAKAVRAA 381 (758)
T ss_pred --CCCeEEEecCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCC--------cCHHHHHHH
Confidence 45789999999764 4799999999 5799999999999999998877655432221 122234444
Q ss_pred HHHc-----cCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 293 AERL-----EGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 293 a~~~-----~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+..+ ..+.|...-.++++|+.... ..... .....++.+|+..++.+...
T Consensus 382 ~~ls~ryi~~r~lPdKaidlldea~a~~~--~~~~~-----------~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 382 VELAVKYINDRHLPDKAIDVIDEAGARAR--LMPVS-----------KRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHhhccccCccChHHHHHHHHHHHHhhc--cCccc-----------ccccccChhhHHHHHHHHhC
Confidence 4333 33567788888888875331 11100 00125788899888888653
No 73
>KOG0989|consensus
Probab=99.76 E-value=8.7e-17 Score=141.33 Aligned_cols=186 Identities=22% Similarity=0.252 Sum_probs=136.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC------eEEEecccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN------FFNITSSTL 151 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~------~~~v~~~~l 151 (371)
..+|+++.|++.+++.|...+ .+ ....++|||||||||||+.|+++|+++..+ +...+.++.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~----------~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNAL----------LR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHH----------hh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 347899999999999999988 33 223579999999999999999999998762 233345544
Q ss_pred cccccchHHHHHHHHHHHHHHh---------C-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKEL---------A-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNK 221 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~---------~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 221 (371)
.+..++... + .-|...... + +-|++|||.|.| +...++.|.+.|+... .
T Consensus 100 rGisvvr~K--i-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm----------tsdaq~aLrr~mE~~s--------~ 158 (346)
T KOG0989|consen 100 RGISVVREK--I-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM----------TSDAQAALRRTMEDFS--------R 158 (346)
T ss_pred ccccchhhh--h-cCHHHHhhccccccCCCCCcceEEEEechhhh----------hHHHHHHHHHHHhccc--------c
Confidence 443322111 1 111111111 1 259999999999 7889999999998754 3
Q ss_pred CEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCH
Q psy6716 222 SVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSS 301 (371)
Q Consensus 222 ~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~ 301 (371)
.+++|..||..+.++..+.+|+.+ +.|+....+.....++.+..+.++. .++..+..++..++| +-
T Consensus 159 ~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~------------~d~~al~~I~~~S~G-dL 224 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVD------------IDDDALKLIAKISDG-DL 224 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCC------------CCHHHHHHHHHHcCC-cH
Confidence 778999999999999999999955 7888888888888899999888875 345568889988887 44
Q ss_pred HHHHHHHHH
Q psy6716 302 ADITIVCRD 310 (371)
Q Consensus 302 ~di~~l~~~ 310 (371)
++...+++.
T Consensus 225 R~Ait~Lqs 233 (346)
T KOG0989|consen 225 RRAITTLQS 233 (346)
T ss_pred HHHHHHHHH
Confidence 443344343
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=5e-17 Score=157.55 Aligned_cols=187 Identities=21% Similarity=0.242 Sum_probs=139.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|...+ .. +..++++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai----------~~-~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTI----------LN-DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------Hc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 447999999999999998876 22 2445789999999999999999999987652
Q ss_pred -------------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHH
Q psy6716 143 -------------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELL 205 (371)
Q Consensus 143 -------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll 205 (371)
++.+++.. ......++.++..+... ...|++|||+|.+ +...++.|+
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L----------s~~a~naLL 149 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML----------SKGAFNALL 149 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc----------CHHHHHHHH
Confidence 11111110 01233455555555433 2469999999998 456677888
Q ss_pred HHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCC
Q psy6716 206 CQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDK 285 (371)
Q Consensus 206 ~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
..|+. ++..+++|.+|+.++.+.+.+.+|+ ..+.+..++.++...+++..+...+.. .+
T Consensus 150 k~LEe--------pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~------------ie 208 (507)
T PRK06645 150 KTLEE--------PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLK------------TD 208 (507)
T ss_pred HHHhh--------cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCC------------CC
Confidence 88753 2456777777888889999999999 679999999999999999999877653 34
Q ss_pred cccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 286 DVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 286 ~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
+..+..++..+.| +.+++..+++.+..
T Consensus 209 ~eAL~~Ia~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 209 IEALRIIAYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4567889999887 88888888877653
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=4.9e-17 Score=159.13 Aligned_cols=188 Identities=24% Similarity=0.305 Sum_probs=135.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
..++++++|++.+++.|..++.. +. .+.+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~-------~~-~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIES-------WL-KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHH-------Hh-cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 34688999999999999998832 12 23446789999999999999999999999999999998765321
Q ss_pred hHHHHHHHHHHHHHH------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 158 DSEKLIRLLFLLAKE------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
..+..+...+.. ..+.+|+|||+|.+.... ....+..|+..++. .+..+|+++|.
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~----------~~~~iIli~n~ 139 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKK----------AKQPIILTAND 139 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHc----------CCCCEEEeccC
Confidence 122222222221 136799999999995421 11234556666642 23356778888
Q ss_pred CCCccH-HHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 232 PWDLDE-AFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 232 ~~~l~~-~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+..+.. .+++|+ ..+.|++|+.+++..+++..+...++. .++..++.|++.+.| |++.+++.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~------------i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIE------------CDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC----CHHHHHHH
Confidence 888877 677777 779999999999999999999877663 345568888888765 66666554
Q ss_pred HH
Q psy6716 311 AA 312 (371)
Q Consensus 311 a~ 312 (371)
..
T Consensus 203 Lq 204 (482)
T PRK04195 203 LQ 204 (482)
T ss_pred HH
Confidence 43
No 76
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.75 E-value=1.5e-16 Score=149.36 Aligned_cols=184 Identities=21% Similarity=0.284 Sum_probs=125.0
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEecccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK-----SNFFNITSSTLTS 153 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~~~~l~~ 153 (371)
.+|++++|++.+++.|...+. . +. ..+++|+||||||||++|+++++++. .+++.++++++..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~----------~-~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVD----------S-PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHh----------C-CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 468899999999999998872 1 11 13699999999999999999999874 3467888776532
Q ss_pred ccc-------------ch-------HHHHHHHHHHHHHHh-----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 154 KWY-------------GD-------SEKLIRLLFLLAKEL-----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 154 ~~~-------------g~-------~~~~~~~~~~~a~~~-----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
... +. ....++.+....... .+.+|+|||+|.+ ....+..|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l----------~~~~~~~L~~~l 149 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL----------REDAQQALRRIM 149 (337)
T ss_pred cchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC----------CHHHHHHHHHHH
Confidence 110 00 011222222222221 2469999999988 334455666666
Q ss_pred hcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 209 DGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 209 ~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
+... ....+|.+++.+..+.+.+.+|+ ..+.+++|+.++...+++..+...+.. .++..
T Consensus 150 e~~~--------~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~a 208 (337)
T PRK12402 150 EQYS--------RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVD------------YDDDG 208 (337)
T ss_pred Hhcc--------CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHH
Confidence 5432 23445556666677788899998 678999999999999999998877653 34556
Q ss_pred HHHHHHHccCCCHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITI 306 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~ 306 (371)
+..++..+.| +.+.+..
T Consensus 209 l~~l~~~~~g-dlr~l~~ 225 (337)
T PRK12402 209 LELIAYYAGG-DLRKAIL 225 (337)
T ss_pred HHHHHHHcCC-CHHHHHH
Confidence 7888888754 4444333
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=5.3e-17 Score=159.93 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=140.1
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++|+|++.+++.|...+. .+..++.+||+||+|+|||++|+++++.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 3479999999999999999882 23445779999999999999999999987542
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++.+. ......++.++..+... ...|++|||+|.| ....++.|+..|+
T Consensus 81 ~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L----------s~~A~NALLKtLE 144 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML----------SKSAFNAMLKTLE 144 (709)
T ss_pred HHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc----------CHHHHHHHHHHHH
Confidence 11122111 11123355555544322 2469999999988 5566778888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.+..+...+++|| ..+.|+.++.++....++..+...++. .++..+
T Consensus 145 EP--------p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~------------id~eAL 203 (709)
T PRK08691 145 EP--------PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIA------------YEPPAL 203 (709)
T ss_pred hC--------CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCC------------cCHHHH
Confidence 43 346778888888999999999999 678999999999999999999887763 345568
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
..|++.+.| +.+++..+++.+..
T Consensus 204 ~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 204 QLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHH
Confidence 899999876 88888888877653
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=7.6e-17 Score=149.85 Aligned_cols=182 Identities=22% Similarity=0.203 Sum_probs=129.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----CeEEEeccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-----NFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~v~~~~l~ 152 (371)
..++++++|+++++..|+..+. . +. ..++||+||||||||++|+++|+++.. .++.+++++..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~----------~-~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIAR----------D-GN-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHh----------c-CC-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 3478999999999999988762 1 12 246999999999999999999998732 35666665432
Q ss_pred ccccchHHHHHHHHHHHHHH-------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 153 SKWYGDSEKLIRLLFLLAKE-------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~-------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
+ ...++........ ....+++|||+|.| +...++.|+..++... ..+.+
T Consensus 77 ~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l----------t~~aq~aL~~~lE~~~--------~~t~~ 132 (319)
T PLN03025 77 G------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM----------TSGAQQALRRTMEIYS--------NTTRF 132 (319)
T ss_pred c------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc----------CHHHHHHHHHHHhccc--------CCceE
Confidence 1 1122222221111 12469999999999 4556777887775432 24567
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|.+||....+.+++++|+ ..+.+++|+.++....++..+.+.++. .++..++.++..+.| +.+.+-
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~------------i~~~~l~~i~~~~~g-DlR~al 198 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVP------------YVPEGLEAIIFTADG-DMRQAL 198 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-CHHHHH
Confidence 778888889999999999 679999999999999999999877763 345567888888776 444444
Q ss_pred HHHH
Q psy6716 306 IVCR 309 (371)
Q Consensus 306 ~l~~ 309 (371)
..++
T Consensus 199 n~Lq 202 (319)
T PLN03025 199 NNLQ 202 (319)
T ss_pred HHHH
Confidence 4443
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=1.3e-16 Score=153.22 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=129.3
Q ss_pred CCcccccChHHHHHH---HHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 79 VKWADIAGLDDAKDL---LYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~---l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
.++++++|++.++.. +...+. . ....+++|+||||||||++|+++++..+.+|+.+++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~----------~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~--- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIE----------A--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG--- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHH----------c--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---
Confidence 468899999999666 777662 1 2234799999999999999999999999999998876421
Q ss_pred cchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC-
Q psy6716 156 YGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN- 230 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn- 230 (371)
...++.++..+. ...+.+|||||+|.+ ....+..|+..++. ..+++|++|+
T Consensus 74 ----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l----------~~~~q~~LL~~le~----------~~iilI~att~ 129 (413)
T PRK13342 74 ----VKDLREVIEEARQRRSAGRRTILFIDEIHRF----------NKAQQDALLPHVED----------GTITLIGATTE 129 (413)
T ss_pred ----HHHHHHHHHHHHHhhhcCCceEEEEechhhh----------CHHHHHHHHHHhhc----------CcEEEEEeCCC
Confidence 122333444432 224689999999998 45566777777642 2456665543
Q ss_pred -CCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 231 -FPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 231 -~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
....+++++++|+ ..+.+++|+.++...+++..+....... .. .++..++.+++.+.| +++.+..+++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~--------i~-i~~~al~~l~~~s~G-d~R~aln~Le 198 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGL--------VE-LDDEALDALARLANG-DARRALNLLE 198 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCC--------CC-CCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3357889999999 7799999999999999998876532100 01 234457788888755 6666666666
Q ss_pred HHH
Q psy6716 310 DAA 312 (371)
Q Consensus 310 ~a~ 312 (371)
.+.
T Consensus 199 ~~~ 201 (413)
T PRK13342 199 LAA 201 (413)
T ss_pred HHH
Confidence 554
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.8e-16 Score=154.63 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=135.3
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|...+. . +..++.+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~----------~-~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALE----------T-QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3579999999999999998872 2 234466899999999999999999998754
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.++...- .| ...++.+...+... ...|++|||+|.| +...++.|+..|+
T Consensus 81 ~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l----------s~~a~naLLK~LE 144 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML----------SKQSFNALLKTLE 144 (546)
T ss_pred HHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc----------cHHHHHHHHHHHh
Confidence 1222222110 11 11233333333321 3469999999999 6667888999886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|++|+.+..+.+.+++|+ ..+.+..++.++....+...+...++. .++..+
T Consensus 145 ep--------p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~------------~e~~Al 203 (546)
T PRK14957 145 EP--------PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENIN------------SDEQSL 203 (546)
T ss_pred cC--------CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 53 346667777777888888899999 889999999999999999888876653 445567
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..++..+.| +.+++..+++.+.
T Consensus 204 ~~Ia~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 204 EYIAYHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 888888876 7777777777654
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2.2e-16 Score=153.67 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=134.3
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.++..|...+. . +..++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~----------~-~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALR----------Q-GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 4579999999999999998882 2 2344567999999999999999999987531
Q ss_pred --------eEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhc
Q psy6716 143 --------FFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDG 210 (371)
Q Consensus 143 --------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 210 (371)
++.++++.- .....++.+...+.. ..+.+|+|||+|.+ ....++.|+..++.
T Consensus 79 i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l----------s~~a~naLLk~LEe 142 (504)
T PRK14963 79 VRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM----------SKSAFNALLKTLEE 142 (504)
T ss_pred HhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECcccc----------CHHHHHHHHHHHHh
Confidence 333333210 112223333333332 23569999999988 45667788888754
Q ss_pred ccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 211 LASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
. +..+++|.+|+.+..+.+.+.+|+ ..+.+++|+.++....++..+.+.++. .++..+.
T Consensus 143 p--------~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~------------i~~~Al~ 201 (504)
T PRK14963 143 P--------PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGRE------------AEPEALQ 201 (504)
T ss_pred C--------CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHH
Confidence 3 346677778888889999999999 579999999999999999999877763 3455678
Q ss_pred HHHHHccCCCHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a 311 (371)
.++..+.| +.+++.++++.+
T Consensus 202 ~ia~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 202 LVARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 88888886 666666666654
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.3e-16 Score=157.55 Aligned_cols=186 Identities=17% Similarity=0.222 Sum_probs=136.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|...+. . +..++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~----------~-~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALT----------Q-QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 3579999999999999999882 2 2344668999999999999999999987641
Q ss_pred --------------eEEEecccccccccchHHHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHH
Q psy6716 143 --------------FFNITSSTLTSKWYGDSEKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSEL 204 (371)
Q Consensus 143 --------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~l 204 (371)
++.++... ......++.+...+.... ..|++|||+|.| +...++.|
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------s~~a~NaL 144 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------TNTAFNAM 144 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC----------CHHHHHHH
Confidence 22222211 011223444444433221 359999999999 55667888
Q ss_pred HHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCC
Q psy6716 205 LCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVD 284 (371)
Q Consensus 205 l~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
+..|+.. +..+.+|.+|+.+..+...+++|+ ..+.+..++.++....++..+.+.++. .
T Consensus 145 LKtLEEP--------P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~------------i 203 (618)
T PRK14951 145 LKTLEEP--------PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVP------------A 203 (618)
T ss_pred HHhcccC--------CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCC------------C
Confidence 8888543 456777778888888999999999 789999999999999999988877663 3
Q ss_pred CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 285 KDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 285 ~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
++..+..|+..+.| +.+++..++..+.
T Consensus 204 e~~AL~~La~~s~G-slR~al~lLdq~i 230 (618)
T PRK14951 204 EPQALRLLARAARG-SMRDALSLTDQAI 230 (618)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 45568889998887 7888877776554
No 83
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=3.9e-16 Score=152.52 Aligned_cols=171 Identities=16% Similarity=0.239 Sum_probs=119.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|.. +.....+|+||||+.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCC-
Confidence 459999999999999999999976 457889998887765544332222222332 2234689999999998543
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC----CCccHHHHhcc--cceEEecCCCHHHHHHHHHHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP----WDLDEAFRRRL--EKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~----~~l~~~l~~rf--~~~i~~~~p~~~er~~il~~~ 264 (371)
...+..|+..++.+.. ....+|| |+|.+ ..+++.|.+|| ..++.+..|+.+.|..||+..
T Consensus 393 -------e~tqeeLF~l~N~l~e------~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 393 -------ESTQEEFFHTFNTLHN------ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred -------HHHHHHHHHHHHHHHh------cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 2234455555554443 1122444 55544 34678999998 466788999999999999999
Q ss_pred HhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 265 LQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
+...++. .++..++.|+.+..+ +.+.|..++......+
T Consensus 459 a~~r~l~------------l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 459 AVQEQLN------------APPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred HHhcCCC------------CCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 9877764 456668899999875 7888888877654333
No 84
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.3e-16 Score=155.22 Aligned_cols=186 Identities=19% Similarity=0.152 Sum_probs=135.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|+..+. .+..++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 3479999999999999999882 22444568999999999999999999987641
Q ss_pred -----------eEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHH
Q psy6716 143 -----------FFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207 (371)
Q Consensus 143 -----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~ 207 (371)
++.++.+.. .....++.+...+.. ....|++|||+|.| +...++.|+..
T Consensus 78 ~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L----------t~~A~NALLK~ 141 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV----------TTAGFNALLKI 141 (584)
T ss_pred HhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC----------CHHHHHHHHHH
Confidence 122222110 012223333333322 23459999999999 56678889988
Q ss_pred hhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 208 MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 208 l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
|+.. +..+++|.+|+.++.+.+.+++|+ ..+.|..++.++..+.+..++...+.. .++.
T Consensus 142 LEEp--------p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~------------i~~~ 200 (584)
T PRK14952 142 VEEP--------PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVV------------VDDA 200 (584)
T ss_pred HhcC--------CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCC------------CCHH
Confidence 8643 457788888888899999999998 779999999999999999988877653 3444
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
.+..++..+.| +.+++.++++.+.
T Consensus 201 al~~Ia~~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 201 VYPLVIRAGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 56777777765 7887777777654
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.3e-16 Score=156.56 Aligned_cols=186 Identities=18% Similarity=0.228 Sum_probs=137.1
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC----------------
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---------------- 142 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---------------- 142 (371)
.+|++++|++.+++.|...+. .+..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 479999999999999998882 12344678999999999999999999988652
Q ss_pred --------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhc
Q psy6716 143 --------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDG 210 (371)
Q Consensus 143 --------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 210 (371)
++.++.+. ......++.+...+... ...|++|||+|.| +...++.|+..|+.
T Consensus 82 i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l----------s~~a~naLLK~LEe 145 (527)
T PRK14969 82 IDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML----------SKSAFNAMLKTLEE 145 (527)
T ss_pred HhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC----------CHHHHHHHHHHHhC
Confidence 12222111 01123345555544332 2359999999999 55667888888865
Q ss_pred ccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 211 LASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
. +..+.+|.+|+.+..+.+.+++|+ ..+.++.++.++....+...+...++. .++..+.
T Consensus 146 p--------p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~------------~~~~al~ 204 (527)
T PRK14969 146 P--------PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIP------------FDATALQ 204 (527)
T ss_pred C--------CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHH
Confidence 3 446777878888888888899999 779999999999999998888766652 3445577
Q ss_pred HHHHHccCCCHHHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a~~ 313 (371)
.++..+.| +.+++..+++.+..
T Consensus 205 ~la~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 205 LLARAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHH
Confidence 88888876 78888888876653
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=3.7e-16 Score=150.59 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=117.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
.+++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+..+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~- 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK- 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc-
Confidence 569999999999999999999875 45688888887655443221111111233222235789999999988542
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~ 265 (371)
...+..|+..++.+.. ....+|+++.+.|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+
T Consensus 210 -------~~~q~elf~~~n~l~~------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 210 -------TGVQTELFHTFNELHD------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred -------HHHHHHHHHHHHHHHH------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 2234455555554433 223455555566654 4567888883 577899999999999999998
Q ss_pred hcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 266 QNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
...++. .++..++.||....| +.++|..++......+
T Consensus 277 ~~~~~~------------l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 277 EIEHGE------------LPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HhcCCC------------CCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 765543 445568899999886 7888888887654333
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=4.2e-16 Score=154.11 Aligned_cols=186 Identities=21% Similarity=0.259 Sum_probs=137.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|+..+. . +..++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~----------~-~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIK----------Q-GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 4579999999999999999882 2 244567999999999999999999998753
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.++++. ......++.+...+... ...|++|||+|.| +...++.|+..++
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L----------t~~a~naLLKtLE 144 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML----------STGAFNALLKTLE 144 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHHHhc
Confidence 223333221 11223455555554432 2469999999999 5556778888875
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+++|.+|+.++.+.+.+++|+ ..+.+++|+.++....++..+.+.++. .++..+
T Consensus 145 ep--------p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~------------i~~~al 203 (559)
T PRK05563 145 EP--------PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIE------------YEDEAL 203 (559)
T ss_pred CC--------CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 446777777788899999999999 568999999999999999999877653 344557
Q ss_pred HHHHHHccCCCHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~ 312 (371)
..++..+.| +.+++..+++.+.
T Consensus 204 ~~ia~~s~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 204 RLIARAAEG-GMRDALSILDQAI 225 (559)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 788888877 7787777776554
No 88
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.73 E-value=3.6e-16 Score=148.35 Aligned_cols=234 Identities=21% Similarity=0.286 Sum_probs=150.1
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhh----hcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccch
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFD----KLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYGD 158 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g~ 158 (371)
++|++.+++.|...+..+..+..... ....+..++||+||||||||++|+++|..++.||+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999877643221111000 11134578999999999999999999999999999999988753 56665
Q ss_pred H-HHHHHHHHHH----HHHhCCcEEEeccchhhccCCCCCh---hh-hhhhHHHHHHHhhcccc----cC-CCCCCCCEE
Q psy6716 159 S-EKLIRLLFLL----AKELAPSIVFFDEIDSMCSHRSTST---DV-TRRMKSELLCQMDGLAS----VS-NEDPNKSVL 224 (371)
Q Consensus 159 ~-~~~~~~~~~~----a~~~~~~il~lDeid~l~~~~~~~~---~~-~~~~~~~ll~~l~~~~~----~~-~~~~~~~v~ 224 (371)
. +..+..++.. .....++||||||||.+..+..+.. +. ...+|..||..|++... .+ ...+..+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 3 3333333332 2334689999999999987633221 11 23588999999985421 11 122334566
Q ss_pred EEeecCCC-----------------------------C-----------------------CccHHHHhcccceEEecCC
Q psy6716 225 ILAATNFP-----------------------------W-----------------------DLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 225 vI~ttn~~-----------------------------~-----------------------~l~~~l~~rf~~~i~~~~p 252 (371)
+|.|+|.. . .+.|+++.|++.++.+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 66666651 0 0356777799999999999
Q ss_pred CHHHHHHHHHH----HHhcCCCCcchhhhhhcccCCCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHh
Q psy6716 253 DQATRVSLLTI----FLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER--LEGYSSADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 253 ~~~er~~il~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~g~s~~di~~l~~~a~~~~~~~~~ 320 (371)
+.++..+|+.. +++++.... ......+. .++..++.|++. ..++-.+-|+.+++......+.+..
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l--~~~~i~L~-~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLF--EMDGVELE-FTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HhCCcEEE-ECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999973 332211000 00000111 234457778876 3455678899999988877777653
No 89
>PRK06893 DNA replication initiation factor; Validated
Probab=99.73 E-value=5.3e-16 Score=137.17 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=119.3
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
.+..+|++++|.+... .+.... ..+.. ...+.++|||||||||||+++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~-------~~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLR-------KNFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHH-------HHhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3556888887655322 111111 11111 222458999999999999999999875 3455555543211
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
. .....+.... +..+|+|||++.+.++ ......|+..++..... ...++|++++..|
T Consensus 80 ~--------~~~~~~~~~~--~~dlLilDDi~~~~~~--------~~~~~~l~~l~n~~~~~-----~~~illits~~~p 136 (229)
T PRK06893 80 Y--------FSPAVLENLE--QQDLVCLDDLQAVIGN--------EEWELAIFDLFNRIKEQ-----GKTLLLISADCSP 136 (229)
T ss_pred h--------hhHHHHhhcc--cCCEEEEeChhhhcCC--------hHHHHHHHHHHHHHHHc-----CCcEEEEeCCCCh
Confidence 0 1112222222 3679999999998542 12233455555544321 1234455555566
Q ss_pred CCcc---HHHHhcc--cceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 233 WDLD---EAFRRRL--EKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 233 ~~l~---~~l~~rf--~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
..++ +.+.+|+ +..+.++.|+.++|..+++..+...++. .++..++.|+++..| +.+.+..+
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~------------l~~~v~~~L~~~~~~-d~r~l~~~ 203 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE------------LSDEVANFLLKRLDR-DMHTLFDA 203 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhccC-CHHHHHHH
Confidence 5554 7899976 4688899999999999999888765553 456668899999986 77777777
Q ss_pred HHHHH
Q psy6716 308 CRDAA 312 (371)
Q Consensus 308 ~~~a~ 312 (371)
++...
T Consensus 204 l~~l~ 208 (229)
T PRK06893 204 LDLLD 208 (229)
T ss_pred HHHHH
Confidence 77543
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.9e-16 Score=154.06 Aligned_cols=184 Identities=22% Similarity=0.226 Sum_probs=131.1
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++|+|++.+++.|..++. . +.....+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~----------~-~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQ----------E-NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHH----------c-CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 4579999999999999998882 2 2334679999999999999999999988652
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++...- . ....++.+...+. .....||+|||+|.| ....++.|+..|+
T Consensus 81 ~i~~g~hpDv~eId~a~~--~----~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L----------t~~a~naLLk~LE 144 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASN--R----GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML----------TREAFNALLKTLE 144 (624)
T ss_pred HHhcCCCCceEEEecccc--c----CHHHHHHHHHHHHhhhhcCCceEEEEEChHhC----------CHHHHHHHHHHhh
Confidence 333332110 0 1112222222222 123469999999999 5566788888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. ...+++|++|+.+..+...+++|+ ..+.|+.++.++...+++..+...+.. .++..+
T Consensus 145 EP--------~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~------------id~eal 203 (624)
T PRK14959 145 EP--------PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVD------------YDPAAV 203 (624)
T ss_pred cc--------CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 346788888888888999999999 678999999999999999888776642 344457
Q ss_pred HHHHHHccCCCHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~ 310 (371)
..+++.+.| +.+++..+++.
T Consensus 204 ~lIA~~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 204 RLIARRAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HHHHHHcCC-CHHHHHHHHHH
Confidence 788888876 55555555553
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=6e-16 Score=137.05 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=135.5
Q ss_pred CCCCccccc--ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccc
Q psy6716 77 TNVKWADIA--GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTL 151 (371)
Q Consensus 77 ~~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l 151 (371)
+..+|++++ +...+...++.+.. ......+++|+||+|||||++|+++++.. +.+++.+++..+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 345677765 44566666666551 12334679999999999999999999875 568888887764
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
... +. ....+.+|+|||+|.+ ....+..|+..++.... ....++|.+++.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l----------~~~~~~~L~~~~~~~~~------~~~~~vl~~~~~ 131 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERL----------DDAQQIALFNLFNRVRA------HGQGALLVAGPA 131 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhc----------CchHHHHHHHHHHHHHH------cCCcEEEEeCCC
Confidence 321 11 1224679999999988 22334556666654432 223334444443
Q ss_pred C---CCccHHHHhcc--cceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 232 P---WDLDEAFRRRL--EKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 232 ~---~~l~~~l~~rf--~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
+ ..+.+.+.+|| ...+.+++|+.+++..++..+....++. .++..++.|++...| +.+++..
T Consensus 132 ~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~------------l~~~al~~L~~~~~g-n~~~l~~ 198 (227)
T PRK08903 132 APLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ------------LADEVPDYLLTHFRR-DMPSLMA 198 (227)
T ss_pred CHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhccC-CHHHHHH
Confidence 3 23567888887 4688999999999999998887766553 445568888887665 8888888
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVR 350 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 350 (371)
+++.....+... ..+||...+.+++.
T Consensus 199 ~l~~l~~~~~~~------------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSLEQ------------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHh------------------CCCCCHHHHHHHHh
Confidence 888754433332 13788888888775
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.72 E-value=3.8e-16 Score=138.21 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=126.0
Q ss_pred CCCccccc--ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 78 NVKWADIA--GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
..+|++++ +....+..++.++. ...+.+++|+||+|||||++|+++++.+ +.++++++|+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34566664 46677777777651 1344679999999999999999999876 4678889988775
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
... ..++.... ...+|+|||+|.+... ...+..+...++.... ....+|++++..+
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~--------~~~~~~L~~~l~~~~~------~~~~iIits~~~~ 134 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQ--------PEWQEALFHLYNRVRE------AGGRLLIAGRAAP 134 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCC--------hHHHHHHHHHHHHHHH------cCCeEEEECCCCh
Confidence 321 12222222 3569999999998321 1124445555543322 1123444333344
Q ss_pred CCc--c-HHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 233 WDL--D-EAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 233 ~~l--~-~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
..+ . +.+.+|+. ..+.+|+|+.+++..+++.++...++. .++..+..|+.... -+.+++..+
T Consensus 135 ~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~------------~~~~~l~~L~~~~~-gn~r~L~~~ 201 (226)
T TIGR03420 135 AQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ------------LPDEVADYLLRHGS-RDMGSLMAL 201 (226)
T ss_pred HHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhcc-CCHHHHHHH
Confidence 333 2 77888873 678999999999999999887655442 34555788888755 489999999
Q ss_pred HHHHHHHHHH
Q psy6716 308 CRDAAFMNLR 317 (371)
Q Consensus 308 ~~~a~~~~~~ 317 (371)
++.+...+..
T Consensus 202 l~~~~~~~~~ 211 (226)
T TIGR03420 202 LDALDRASLA 211 (226)
T ss_pred HHHHHHHHHH
Confidence 9887654444
No 93
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.3e-15 Score=151.71 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=137.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE---Eecccc--
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN---ITSSTL-- 151 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~---v~~~~l-- 151 (371)
...+|++++|++.+++.|+..+. .+..++.+||+||+|+|||++|+++|+.+.+.-.. -.|...
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 34579999999999999999882 22344678999999999999999999987552110 001000
Q ss_pred ----ccccc---c---hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCC
Q psy6716 152 ----TSKWY---G---DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNE 217 (371)
Q Consensus 152 ----~~~~~---g---~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 217 (371)
...+. + .....++.+...+... ...|++|||+|.| ....++.|+..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L----------T~~A~NALLKtLEEP------ 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML----------SKSAFNALLKTLEEP------ 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC----------CHHHHHHHHHHhhcC------
Confidence 00000 0 1123355555555433 2469999999999 455678888888643
Q ss_pred CCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHcc
Q psy6716 218 DPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLE 297 (371)
Q Consensus 218 ~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 297 (371)
+..+++|.+|+.++.+.+.+++|+ ..+.+.+|+.++....+...+...++. ..+..+..+|..+.
T Consensus 146 --P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~------------id~eAl~~LA~lS~ 210 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENIS------------YEKNALKLIAKLSS 210 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcC
Confidence 456777888888899999999999 579999999999999999888776652 23445778888888
Q ss_pred CCCHHHHHHHHHHHH
Q psy6716 298 GYSSADITIVCRDAA 312 (371)
Q Consensus 298 g~s~~di~~l~~~a~ 312 (371)
| +.+++..+++.+.
T Consensus 211 G-slR~AlslLekl~ 224 (725)
T PRK07133 211 G-SLRDALSIAEQVS 224 (725)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 7777777776543
No 94
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=5.7e-16 Score=159.78 Aligned_cols=212 Identities=18% Similarity=0.243 Sum_probs=147.2
Q ss_pred HHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC-------
Q psy6716 68 ILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK------- 140 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~------- 140 (371)
+..++......-.++.++|++..+.++.+.+. + ....+++|+||||||||++|+.+|+...
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~----------r--~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILL----------R--RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHh----------c--CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 33333333344577889999998777776551 1 2335799999999999999999998752
Q ss_pred ---CCeEEEeccccc--ccccchHHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc
Q psy6716 141 ---SNFFNITSSTLT--SKWYGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 141 ---~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 214 (371)
..++.++.+.+. ..+.|+.+..++.++..+... .++||||||+|.+.+.+.... .....+.|+-.+
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~n~Lkp~l------ 312 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGDAANLLKPAL------ 312 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--cccHHHHhhHHh------
Confidence 357777777665 357788999999999988653 578999999999986543221 111112233333
Q ss_pred CCCCCCCCEEEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 215 SNEDPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
..+.+.+|++|+..+ .++++|.||| ..|.++.|+.+++..|++.+...+..... +. ..+..+
T Consensus 313 ----~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~-------v~-i~d~al 379 (852)
T TIGR03345 313 ----ARGELRTIAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHG-------VL-ILDEAV 379 (852)
T ss_pred ----hCCCeEEEEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCC-------Ce-eCHHHH
Confidence 245789999998642 4799999999 57999999999999998777655432111 11 345568
Q ss_pred HHHHHHccCCC-----HHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYS-----SADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s-----~~di~~l~~~a~ 312 (371)
..++..+.+|- |.-.-.++++|+
T Consensus 380 ~~~~~ls~ryi~~r~LPDKAIdlldea~ 407 (852)
T TIGR03345 380 VAAVELSHRYIPGRQLPDKAVSLLDTAC 407 (852)
T ss_pred HHHHHHcccccccccCccHHHHHHHHHH
Confidence 88888887764 344455666554
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.2e-16 Score=158.95 Aligned_cols=186 Identities=19% Similarity=0.128 Sum_probs=134.3
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++|+|++.+++.|+..+. .+..++.+||+||+|||||++|+.+|+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 4579999999999999998882 22344668999999999999999999988641
Q ss_pred -----------eEEEecccccccccchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHH
Q psy6716 143 -----------FFNITSSTLTSKWYGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207 (371)
Q Consensus 143 -----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~ 207 (371)
++.++.... .....++.+...+. .....|+||||+|.| +...++.||+.
T Consensus 80 ~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------t~~a~NaLLK~ 143 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------TPQGFNALLKI 143 (824)
T ss_pred HHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc----------CHHHHHHHHHH
Confidence 122221110 01122333322222 223569999999999 66778889998
Q ss_pred hhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 208 MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 208 l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
|+.. ...+++|++|+.++.|.+.+++|+ .++.|..++.++...++..++...++. .++.
T Consensus 144 LEEp--------P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~------------id~e 202 (824)
T PRK07764 144 VEEP--------PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVP------------VEPG 202 (824)
T ss_pred HhCC--------CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCC------------CCHH
Confidence 8654 347777878888888999999999 779999999999999999988876653 3444
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
.+..++..+.| +.+++..+++...
T Consensus 203 al~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 203 VLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 56778888776 7777776666543
No 96
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.71 E-value=6.7e-17 Score=150.01 Aligned_cols=205 Identities=18% Similarity=0.186 Sum_probs=127.9
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccccc----
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKWY---- 156 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~~---- 156 (371)
++|.+..++.+.+.+ ........+|||+|++||||+++|++||..+. .||+.|+|..+.....
T Consensus 1 liG~S~~m~~~~~~~----------~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQV----------SRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHH----------HHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 467888888888877 44445557799999999999999999998764 5999999997753321
Q ss_pred -chHH-------HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEE
Q psy6716 157 -GDSE-------KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLI 225 (371)
Q Consensus 157 -g~~~-------~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~v 225 (371)
|... ......+..+ .+++||||||+.| +...|..|+..|+.... . +......+++|
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhC----------CHHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 1110 0011123333 3899999999999 78889999999875331 1 12233567899
Q ss_pred EeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhc-ccCCCcccHHHHHHHcc
Q psy6716 226 LAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN-VKVDKDVNIEVLAERLE 297 (371)
Q Consensus 226 I~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 297 (371)
|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+........+... .. .+...+..|..+..
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-ls~~a~~~L~~y~W 215 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPG-FTPQAREQLLEYHW 215 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCC-cCHHHHHHHHhCCC
Confidence 9999864 23456677788 457788888888877544443322110000000000 11 22333455555544
Q ss_pred CCCHHHHHHHHHHHHH
Q psy6716 298 GYSSADITIVCRDAAF 313 (371)
Q Consensus 298 g~s~~di~~l~~~a~~ 313 (371)
--+-++|+++++.+..
T Consensus 216 PGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 216 PGNVRELKNVVERSVY 231 (329)
T ss_pred CchHHHHHHHHHHHHH
Confidence 4455666666665544
No 97
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.71 E-value=1.2e-15 Score=142.02 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=111.8
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccch
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGD 158 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~ 158 (371)
.++++++|++.+++.+...+ .. +..++.+||+||||+|||++|+++++..+.+++.++++. .. ...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~----------~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~ 83 (316)
T PHA02544 18 STIDECILPAADKETFKSIV----------KK-GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDF 83 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHH----------hc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHH
Confidence 47899999999999999887 22 334456777999999999999999999999999999876 21 211
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccH
Q psy6716 159 SEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237 (371)
Q Consensus 159 ~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~ 237 (371)
....+......... ..+.+|+|||+|.+.. ...+..|...++.. ..++.+|++||.+..+.+
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~---------~~~~~~L~~~le~~--------~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGL---------ADAQRHLRSFMEAY--------SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccC---------HHHHHHHHHHHHhc--------CCCceEEEEcCChhhchH
Confidence 11212221111111 2468999999998721 12334444445433 335678889999999999
Q ss_pred HHHhcccceEEecCCCHHHHHHHHHHHHh
Q psy6716 238 AFRRRLEKRIYVPIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 238 ~l~~rf~~~i~~~~p~~~er~~il~~~~~ 266 (371)
++++|| ..+.++.|+.+++..++..++.
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 999999 6789999999999988776544
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.71 E-value=3.8e-16 Score=147.50 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=126.1
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-----------------
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN----------------- 142 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~----------------- 142 (371)
.|++|+|++.+++.|+..+..+......+ ....++++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 48899999999999999995543211111 11245789999999999999999999876442
Q ss_pred ------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc
Q psy6716 143 ------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA 212 (371)
Q Consensus 143 ------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 212 (371)
+..+.+.. . .-....++.++..+... ...|++|||+|.| ....++.|+..|+..
T Consensus 81 ~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m----------~~~aanaLLk~LEep- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL----------TERAANALLKAVEEP- 144 (394)
T ss_pred cCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc----------CHHHHHHHHHHhhcC-
Confidence 11121111 0 01123356666665532 2359999999999 556678888888643
Q ss_pred ccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHH
Q psy6716 213 SVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVL 292 (371)
Q Consensus 213 ~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (371)
+.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++....+.. ..+. +......+
T Consensus 145 -------~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~--------------~~~~a~~l 199 (394)
T PRK07940 145 -------PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV--------------DPETARRA 199 (394)
T ss_pred -------CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC--------------CHHHHHHH
Confidence 334555555666899999999999 6899999999987776653 2222 23346678
Q ss_pred HHHccCCCHHHHHHHH
Q psy6716 293 AERLEGYSSADITIVC 308 (371)
Q Consensus 293 a~~~~g~s~~di~~l~ 308 (371)
+..+.|..+..+..+.
T Consensus 200 a~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 200 ARASQGHIGRARRLAT 215 (394)
T ss_pred HHHcCCCHHHHHHHhc
Confidence 8888887666655443
No 99
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=9.4e-16 Score=145.59 Aligned_cols=227 Identities=19% Similarity=0.166 Sum_probs=142.4
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---------CCeEEEecc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---------SNFFNITSS 149 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---------~~~~~v~~~ 149 (371)
...++++|.++.++.|...+... .. +..+.+++|+||||||||++++++++.+. ..+++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~------~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPI------LR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHH------Hc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 34457999999999998887211 11 23346799999999999999999987652 467888886
Q ss_pred ccccc----------cc--c--------hHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 150 TLTSK----------WY--G--------DSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 150 ~l~~~----------~~--g--------~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
...+. +. + ........++..... ..+.||+|||+|.+... ...++..|+...
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~ 156 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRAR 156 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhccc
Confidence 54321 00 0 112223334443332 33679999999999622 112333443331
Q ss_pred hcccccCCCCCCCCEEEEeecCCCC---CccHHHHhccc-ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCC
Q psy6716 209 DGLASVSNEDPNKSVLILAATNFPW---DLDEAFRRRLE-KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVD 284 (371)
Q Consensus 209 ~~~~~~~~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~-~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
+.. .....++.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+...... ...
T Consensus 157 ~~~-----~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~----------~~~ 221 (365)
T TIGR02928 157 SNG-----DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYD----------GVL 221 (365)
T ss_pred ccc-----CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccC----------CCC
Confidence 110 01235788999999885 47788888884 678999999999999999988631110 002
Q ss_pred CcccHHHHH---HHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 285 KDVNIEVLA---ERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 285 ~~~~~~~la---~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
++..++.++ ..+.| .++.+..+|..|+..+..+. ...|+.+|+..|+..+.
T Consensus 222 ~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~-----------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 222 DDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREG-----------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred ChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHH
Confidence 222233433 44445 56666778888877666542 12577777777776663
No 100
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-15 Score=150.01 Aligned_cols=223 Identities=41% Similarity=0.620 Sum_probs=189.7
Q ss_pred cCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEE
Q psy6716 101 PSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVF 179 (371)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~ 179 (371)
|+..+..++..+ .++.+++++||||+|||.++++++.. +..+..++......++.+..+......|..+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 455566666555 67789999999999999999999999 6656778889999999999999999999999999999999
Q ss_pred eccchhhccCCCC-ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHH
Q psy6716 180 FDEIDSMCSHRST-STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQAT 256 (371)
Q Consensus 180 lDeid~l~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~e 256 (371)
+|+++.+.+.+.. .......+..+++..+++.. ... +.+++.+|.+..+++++++ ||...+.++.|+...
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred echhhhcccCccccccchhhHHHHHHHHhccccc------CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 9999999998776 33566788899999998776 144 8889999999999999999 999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccc
Q psy6716 257 RVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKEL 336 (371)
Q Consensus 257 r~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (371)
+.+++......... ..+.+...++..+.|++++++..++.++...+.++.... ...
T Consensus 155 ~~ei~~~~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~-----------~~~ 210 (494)
T COG0464 155 RLEILQIHTRLMFL-------------GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDL-----------VGE 210 (494)
T ss_pred HHHHHHHHHhcCCC-------------cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhcc-----------Ccc
Confidence 99999988877665 447789999999999999999999999998888886300 011
Q ss_pred cccccHHHHHHHHHhCCCC
Q psy6716 337 DKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 337 ~~~i~~~d~~~al~~~~~~ 355 (371)
...++.+|+.++++.+.++
T Consensus 211 ~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 211 YIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred cccccHHHHHHHHHhcCcc
Confidence 2368999999999998764
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=2.6e-15 Score=133.21 Aligned_cols=208 Identities=12% Similarity=0.107 Sum_probs=131.8
Q ss_pred CCCCCccccc--ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccc
Q psy6716 76 ETNVKWADIA--GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSST 150 (371)
Q Consensus 76 ~~~~~~~~i~--G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~ 150 (371)
.+..+|++++ +...+...++..... ....+++|+||+||||||+++++++... ..+.+++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3456777765 456666666655411 2235799999999999999999998653 3455555543
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCC-EEEEeec
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKS-VLILAAT 229 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~-v~vI~tt 229 (371)
... ....+.+.... ..+|+|||++.+.++ ...+..|...++.... .++ .+|++++
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--------~~~~~~lf~l~n~~~e------~g~~~li~ts~ 139 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--------ELWEMAIFDLYNRILE------SGRTRLLITGD 139 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC--------HHHHHHHHHHHHHHHH------cCCCeEEEeCC
Confidence 211 11112222221 358999999998432 2233344444443322 122 3455555
Q ss_pred CCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHH
Q psy6716 230 NFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304 (371)
Q Consensus 230 n~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di 304 (371)
+.|.. +.+.+++|+. .++.+.+|+.+++..+++..+...++. .++..++.|+++..| +.+.+
T Consensus 140 ~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~------------l~~~v~~~L~~~~~~-d~r~l 206 (235)
T PRK08084 140 RPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE------------LPEDVGRFLLKRLDR-EMRTL 206 (235)
T ss_pred CChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhhcC-CHHHH
Confidence 55544 5799999985 788999999999999999877665543 456668999999987 78888
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHH
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVR 350 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 350 (371)
..+++.....++.+ ..+||.+.+.+++.
T Consensus 207 ~~~l~~l~~~~l~~------------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 207 FMTLDQLDRASITA------------------QRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHhc------------------CCCCCHHHHHHHHc
Confidence 88877643233222 13577777776653
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=6.4e-16 Score=150.90 Aligned_cols=185 Identities=20% Similarity=0.219 Sum_probs=133.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.+...+ .. +..++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI----------~~-~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAI----------LN-NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------Hc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 447999999999999999887 22 234477999999999999999999998743
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.++++.. .....++.+...+... ...|++|||+|.| ....++.|+..|+
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L----------t~~A~NaLLKtLE 144 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML----------STSAWNALLKTLE 144 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhC----------CHHHHHHHHHHHH
Confidence 1222222110 1122344444444332 2459999999998 4456778888886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+++|++|+.+..+.+.+++|+ ..+.+++|+.++....+...+...+.. .++..+
T Consensus 145 EP--------p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~------------Is~eal 203 (605)
T PRK05896 145 EP--------PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIK------------IEDNAI 203 (605)
T ss_pred hC--------CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 43 446778888888899999999999 579999999999999999988776642 334457
Q ss_pred HHHHHHccCCCHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a 311 (371)
..++..+.| +++++..+++.+
T Consensus 204 ~~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 204 DKIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHHHcCC-cHHHHHHHHHHH
Confidence 788888876 677666666653
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.70 E-value=6.9e-16 Score=145.97 Aligned_cols=187 Identities=21% Similarity=0.260 Sum_probs=134.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC--------------
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------------- 142 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------------- 142 (371)
....|++++|++.+++.+...+. . +..++.+||+||||+|||++|+++++.+..+
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~----------~-~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIK----------N-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 34579999999999999998872 2 2344679999999999999999999886432
Q ss_pred ----------eEEEecccccccccchHHHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 143 ----------FFNITSSTLTSKWYGDSEKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 143 ----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
++.++... ......++.++..+...+ ..+++|||+|.+ ....++.|+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l----------~~~~~~~Ll~~l 141 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML----------SKSAFNALLKTL 141 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc----------CHHHHHHHHHHH
Confidence 22222211 011223445555554332 359999999998 445567788877
Q ss_pred hcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 209 DGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 209 ~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
+.. +.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++...++..++...+.. .++..
T Consensus 142 e~~--------~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~------------i~~~a 200 (355)
T TIGR02397 142 EEP--------PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIK------------IEDEA 200 (355)
T ss_pred hCC--------ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCC------------CCHHH
Confidence 542 346677778888888889999999 678999999999999999999877653 34456
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+..++..+.| +++.+...++.+.
T Consensus 201 ~~~l~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 201 LELIARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHHHHHcCC-ChHHHHHHHHHHH
Confidence 7788888876 6666666665544
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1e-15 Score=148.64 Aligned_cols=188 Identities=22% Similarity=0.232 Sum_probs=138.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.|...+ .. +..++.+||+||+|+|||++|+++++.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I----------~~-grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLAL----------DN-NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHH----------Hc-CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 357999999999999999888 22 234466899999999999999999998642
Q ss_pred --------CeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 --------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 --------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.++.++.+.- .....++......... ...|++|||+|.| ....++.|+..|+
T Consensus 79 ~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L----------t~~A~NALLK~LE 142 (535)
T PRK08451 79 SALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML----------TKEAFNALLKTLE 142 (535)
T ss_pred HHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHHHHh
Confidence 1222221110 0123344444333221 1359999999999 6677888999886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +..+.+|.+|+.+..+.+.+++|+ ..+.+.+++.++....+...+...+.. .++..+
T Consensus 143 Ep--------p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~------------i~~~Al 201 (535)
T PRK08451 143 EP--------PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVS------------YEPEAL 201 (535)
T ss_pred hc--------CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCC------------CCHHHH
Confidence 54 346677777788899999999998 679999999999999999988877653 345568
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAAFM 314 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~~~ 314 (371)
..++..+.| +.+++..+++.+...
T Consensus 202 ~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 202 EILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 889988887 888888888776543
No 105
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7.5e-16 Score=152.99 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=137.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++|+|++.+++.|...+. .+..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 3579999999999999998882 22445678999999999999999999987542
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++... ......++.+...+... ...|++|||+|.| +...++.|+..|+
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L----------t~~a~naLLk~LE 144 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML----------STNAFNALLKTLE 144 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC----------CHHHHHHHHHHHH
Confidence 22222211 01122344444444322 2359999999999 5566788998886
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. +.++++|.+|+.++.+.+.+++|+ ..+.|..++.++....+...+.+.++. .++..+
T Consensus 145 ep--------p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~------------i~~~al 203 (576)
T PRK14965 145 EP--------PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGIS------------ISDAAL 203 (576)
T ss_pred cC--------CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCC------------CCHHHH
Confidence 53 447788888888899999999999 679999999999999999888877653 345568
Q ss_pred HHHHHHccCCCHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a 311 (371)
..++..+.| +.+++..+++.+
T Consensus 204 ~~la~~a~G-~lr~al~~Ldql 224 (576)
T PRK14965 204 ALVARKGDG-SMRDSLSTLDQV 224 (576)
T ss_pred HHHHHHcCC-CHHHHHHHHHHH
Confidence 888988887 667776666544
No 106
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.70 E-value=1e-15 Score=154.49 Aligned_cols=189 Identities=22% Similarity=0.267 Sum_probs=126.0
Q ss_pred CCCcccccChHHHHH---HHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAKD---LLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~---~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
..++++++|++.+.. .++..+ .. ....+++|+||||||||++|+++|+..+.+|+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i----------~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-- 89 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAI----------KA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-- 89 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHH----------hc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh--
Confidence 346889999999884 455555 21 2225799999999999999999999999999888875321
Q ss_pred ccchHHHHHHHHHHHH----H-HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 155 WYGDSEKLIRLLFLLA----K-ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a----~-~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
. ..++..+..+ . ...+.+|||||+|.+ ....+..|+..++ ...+++|++|
T Consensus 90 -i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L----------n~~qQdaLL~~lE----------~g~IiLI~aT 144 (725)
T PRK13341 90 -V----KDLRAEVDRAKERLERHGKRTILFIDEVHRF----------NKAQQDALLPWVE----------NGTITLIGAT 144 (725)
T ss_pred -h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhC----------CHHHHHHHHHHhc----------CceEEEEEec
Confidence 1 1122222222 1 123579999999998 4455667776663 2345666655
Q ss_pred CCC--CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFP--WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~--~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
+.. ..+++++++|+ ..+.+++++.+++..+++..+...... ....... .++..++.|++.+.| +.+.+..+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~----~g~~~v~-I~deaL~~La~~s~G-D~R~lln~ 217 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERG----YGDRKVD-LEPEAEKHLVDVANG-DARSLLNA 217 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhh----cCCcccC-CCHHHHHHHHHhCCC-CHHHHHHH
Confidence 432 46889999998 679999999999999999988731100 0000111 344457888888765 56666666
Q ss_pred HHHHH
Q psy6716 308 CRDAA 312 (371)
Q Consensus 308 ~~~a~ 312 (371)
++.+.
T Consensus 218 Le~a~ 222 (725)
T PRK13341 218 LELAV 222 (725)
T ss_pred HHHHH
Confidence 66554
No 107
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.70 E-value=5.5e-16 Score=158.20 Aligned_cols=242 Identities=17% Similarity=0.202 Sum_probs=151.7
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-------
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS------- 153 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~------- 153 (371)
.+..|++.+|+++.+++.... ... .....++|+||||+|||++++.+|..++.+++.++++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 347999999999998874321 111 23346999999999999999999999999999998766432
Q ss_pred --cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-------CCCCCCCCEE
Q psy6716 154 --KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-------SNEDPNKSVL 224 (371)
Q Consensus 154 --~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~v~ 224 (371)
.+.|.....+...+..+... ..|++|||+|.+.+...+ .....|+..++.-... .-...-.+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~~~~g------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSSDMRG------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhcccccCC------CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 24444433343444443333 348999999999654222 2356777777631110 0012346899
Q ss_pred EEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH-ccCCCHHH
Q psy6716 225 ILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER-LEGYSSAD 303 (371)
Q Consensus 225 vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~g~s~~d 303 (371)
+|+|+|.. .+++++++|+ .++.++.++.++..+|++.++....... .......+. .++..+..+++. +..+-.+.
T Consensus 468 ~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~-~~l~~~~l~-i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIER-NALKKGELT-VDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHH-hCCCCCeEE-ECHHHHHHHHHhCCcccCCcH
Confidence 99999987 5999999999 6899999999999999998884211000 000000111 223335555542 23333467
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHh
Q psy6716 304 ITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRN 351 (371)
Q Consensus 304 i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 351 (371)
|+..++......+.+.+..... ....|+.+++...+-.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~----------~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSL----------KHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----------ceeeecHHHHHHHhCC
Confidence 7777776665555554322111 1136778887776654
No 108
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=3.7e-15 Score=143.32 Aligned_cols=239 Identities=15% Similarity=0.223 Sum_probs=145.3
Q ss_pred CCCCCccccc-ChHHH--HHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 76 ETNVKWADIA-GLDDA--KDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 76 ~~~~~~~~i~-G~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
.+..+|++++ |.+.. ...+++....+. ...+.+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3566788874 53322 334444331110 0111234679999999999999999999875 5788888887
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 150 TLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 150 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
.+...+...........|... .....+|+|||++.+.++. ..+..|+..++.+.. ....+|++++
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~--------~~qeelf~l~N~l~~------~~k~IIlts~ 243 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG--------ATQEEFFHTFNSLHT------EGKLIVISST 243 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh--------hhHHHHHHHHHHHHH------CCCcEEEecC
Confidence 665433222111111123322 1246799999999985421 234455555543332 1233445444
Q ss_pred CCCC---CccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHH
Q psy6716 230 NFPW---DLDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304 (371)
Q Consensus 230 n~~~---~l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di 304 (371)
..|. .+++.+.+||. ..+.+++|+.++|..|++..+...++. .++..++.+|....+ +.+.|
T Consensus 244 ~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~------------l~~evl~~la~~~~~-dir~L 310 (445)
T PRK12422 244 CAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIR------------IEETALDFLIEALSS-NVKSL 310 (445)
T ss_pred CCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhcCC-CHHHH
Confidence 4453 46789999995 678889999999999999999876653 455567888888875 55566
Q ss_pred HHHHHHHHH-HHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC---CC--CCCHHHHHHH
Q psy6716 305 TIVCRDAAF-MNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC---PK--TVRPEDAEKF 364 (371)
Q Consensus 305 ~~l~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~---~~--~~~~~~~~~~ 364 (371)
...++..+. .+..+.. ..+|+.+++.++++.. .+ .++.+.|..-
T Consensus 311 ~g~l~~l~~~~a~~~~~----------------~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~ 360 (445)
T PRK12422 311 LHALTLLAKRVAYKKLS----------------HQLLYVDDIKALLHDVLEAAESVRLTPSKIIRA 360 (445)
T ss_pred HHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHH
Confidence 655554432 2233221 1368888888888764 22 3566666543
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.5e-15 Score=147.47 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=132.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-------CeEE-Eecc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-------NFFN-ITSS 149 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------~~~~-v~~~ 149 (371)
..+|++++|++.++..|+..+ .. +..++.+||+||+|+|||++|+.+|+.+++ |+-. .+|.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i----------~~-~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAV----------KL-QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CCcHHHccChHHHHHHHHHHH----------Hc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 447899999999999999888 22 234466899999999999999999998753 1111 0111
Q ss_pred cccc-----cc-----cchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 150 TLTS-----KW-----YGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 150 ~l~~-----~~-----~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
.+.. -+ .......++.+...+... ...|++|||+|.| ....++.|+..++..
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L----------t~~a~naLLk~LEep---- 146 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML----------TKEAFNALLKTLEEP---- 146 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc----------CHHHHHHHHHHHhcC----
Confidence 1100 00 001122234444444332 2469999999988 455667788877543
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
+..+++|.+|+.++.+.+.+.+|+ ..+.+++|+.++....+...+...++. .++..+..++..
T Consensus 147 ----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~------------id~~al~~La~~ 209 (486)
T PRK14953 147 ----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIE------------YEEKALDLLAQA 209 (486)
T ss_pred ----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHH
Confidence 335566666777788889999999 579999999999999999999877753 344557788888
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy6716 296 LEGYSSADITIVCRDAA 312 (371)
Q Consensus 296 ~~g~s~~di~~l~~~a~ 312 (371)
+.| +.+++.++++.+.
T Consensus 210 s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 210 SEG-GMRDAASLLDQAS 225 (486)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 876 6777777776654
No 110
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.69 E-value=2.1e-16 Score=154.23 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=133.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHH--------c---CCCeEEEe
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATE--------T---KSNFFNIT 147 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~--------~---~~~~~~v~ 147 (371)
..|++++|.+..++.+++.+ ........+|||+|++||||+++|++|+.. + +.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i----------~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTI----------LLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHH----------HHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46888999999999999888 444455578999999999999999999987 3 45999999
Q ss_pred cccccccc-----cchHHH--------HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-
Q psy6716 148 SSTLTSKW-----YGDSEK--------LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS- 213 (371)
Q Consensus 148 ~~~l~~~~-----~g~~~~--------~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~- 213 (371)
|+.+.... +|.... ....+|..+. +++||||||+.| +...|..|+..|+....
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L----------p~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM----------PLPLQTRLLRVLEEKEVT 352 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC----------CHHHHHHHHhhhhcCeEE
Confidence 99876432 221111 1112344443 799999999999 78899999999975332
Q ss_pred -c-CCCCCCCCEEEEeecCCCC-------CccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhc
Q psy6716 214 -V-SNEDPNKSVLILAATNFPW-------DLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLN 280 (371)
Q Consensus 214 -~-~~~~~~~~v~vI~ttn~~~-------~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~ 280 (371)
. +....+.+++||++|+..- .+.+.+..|+ ..+.+..|+..+|.+ ++.+++.+..... .
T Consensus 353 r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-------~ 424 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAAL-------S 424 (538)
T ss_pred ecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHc-------C
Confidence 1 1223356789999998741 1233444566 457888888888876 3445554421000 0
Q ss_pred ccCCCcc------cHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 281 VKVDKDV------NIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 281 ~~~~~~~------~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
..+.++. .+..|..+..--+-++|+++++++..
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 0011111 11334444444466788888877664
No 111
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.69 E-value=2.1e-16 Score=154.49 Aligned_cols=166 Identities=22% Similarity=0.293 Sum_probs=117.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~ 154 (371)
...|++++|.++.++.+.+.+ ...+....+|||+|++||||+++|++||..+ +.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i----------~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALV----------RLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHH----------HHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 356889999999999999888 4444555789999999999999999999875 459999999987543
Q ss_pred c-----cchHHH--------HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--cC-CCC
Q psy6716 155 W-----YGDSEK--------LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--VS-NED 218 (371)
Q Consensus 155 ~-----~g~~~~--------~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-~~~ 218 (371)
. +|.... ....+|+.+. +++||||||+.| +...|..|+..|+.... .+ ...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L----------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM----------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC----------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 2 221110 1123344443 799999999999 78899999999875332 11 123
Q ss_pred CCCCEEEEeecCCCC-------CccHHHHhcccceEEecCCCHHHHHHH----HHHHHhc
Q psy6716 219 PNKSVLILAATNFPW-------DLDEAFRRRLEKRIYVPIPDQATRVSL----LTIFLQN 267 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~-------~l~~~l~~rf~~~i~~~~p~~~er~~i----l~~~~~~ 267 (371)
.+.+++||++|+..- .+.+.+..|+ ..+.+..|+..+|.+- +.+++..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 345789999998751 2333444466 4577888888888764 4444443
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.69 E-value=6.9e-16 Score=159.64 Aligned_cols=169 Identities=18% Similarity=0.314 Sum_probs=127.8
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v 146 (371)
..-.++.++|.+..+.++.+.+ .+ ....+++|+||||||||++|+.+|... +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL----------~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVL----------QR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHH----------hc--CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3446788999999877777665 22 233579999999999999999999987 6688888
Q ss_pred eccccc--ccccchHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCE
Q psy6716 147 TSSTLT--SKWYGDSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV 223 (371)
Q Consensus 147 ~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v 223 (371)
+.+.+. .++.|+.+..++.++..... ..++||||||+|.+.+.....+. ....+-|.-.+ ..+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l----------~~g~l 308 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPAL----------ARGEL 308 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchh----------hcCCC
Confidence 888765 45778888889999987644 45789999999999865433221 12233333333 24578
Q ss_pred EEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 224 LILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 224 ~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
.+|++|+..+ .+++++.|||. .|.++.|+.+++..|++.+...+..
T Consensus 309 ~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 309 HCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred eEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 9999999875 47999999995 6889999999999999988765543
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.6e-15 Score=149.47 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=135.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-------eEEE-ecc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------FFNI-TSS 149 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------~~~v-~~~ 149 (371)
..+|++++|++.+++.|...+ .. +..++.+||+||+|+|||++|+++|+.+.+. +-.+ +|.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i----------~~-~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSI----------ES-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHH----------Hc-CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 447999999999999999988 22 2344679999999999999999999987642 1110 010
Q ss_pred ccccc-------ccch---HHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 150 TLTSK-------WYGD---SEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 150 ~l~~~-------~~g~---~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
.+... .-|. ....++.+...+.. ....|++|||+|.| +...++.|+..++.
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L----------s~~a~naLLK~LEe----- 145 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML----------SNSAFNALLKTIEE----- 145 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc----------CHHHHHHHHHhhcc-----
Confidence 00000 0011 11233333333322 23469999999999 55677888888864
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
++..+++|.+|+.+..+.+++++|+ ..+.+.+|+.++....++..+...++. .++..+..++..
T Consensus 146 ---pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~------------id~eAl~lLa~~ 209 (563)
T PRK06647 146 ---PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIK------------YEDEALKWIAYK 209 (563)
T ss_pred ---CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHH
Confidence 2456777778888888999999999 578999999999999999888776653 345567888988
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy6716 296 LEGYSSADITIVCRDAA 312 (371)
Q Consensus 296 ~~g~s~~di~~l~~~a~ 312 (371)
+.| +.+++..+++.+.
T Consensus 210 s~G-dlR~alslLdkli 225 (563)
T PRK06647 210 STG-SVRDAYTLFDQVV 225 (563)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 7888887777654
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.69 E-value=2.6e-15 Score=131.60 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=126.6
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEec
Q psy6716 77 TNVKWADIA-G--LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITS 148 (371)
Q Consensus 77 ~~~~~~~i~-G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~ 148 (371)
+..+|++++ | ...+...+.... ...+....+++||||+|+|||+|.++++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia----------~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIA----------ENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHH----------HSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHH----------hcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 566888874 4 455555555444 2222233569999999999999999998864 557888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 149 STLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 149 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
.++...+...........|.. ......+|+||+++.+.. ....+..|...++.... .+..+|+++
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~-~~~~~DlL~iDDi~~l~~--------~~~~q~~lf~l~n~~~~------~~k~li~ts 137 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKD-RLRSADLLIIDDIQFLAG--------KQRTQEELFHLFNRLIE------SGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHH-HHCTSSEEEEETGGGGTT--------HHHHHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred HHHHHHHHHHHHcccchhhhh-hhhcCCEEEEecchhhcC--------chHHHHHHHHHHHHHHh------hCCeEEEEe
Confidence 877654433222111111211 122467999999999953 34456777777776654 234456666
Q ss_pred cCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHH
Q psy6716 229 TNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSAD 303 (371)
Q Consensus 229 tn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~d 303 (371)
...|.. +++.+.+||. ..+.+.+|+.+.|..+++..+...++. .++..++.|+++..+ +.+.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~------------l~~~v~~~l~~~~~~-~~r~ 204 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE------------LPEEVIEYLARRFRR-DVRE 204 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--------------S-HHHHHHHHHHTTS-SHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC------------CcHHHHHHHHHhhcC-CHHH
Confidence 566654 5688999874 478889999999999999999988774 455568889999875 7888
Q ss_pred HHHHHHHHH
Q psy6716 304 ITIVCRDAA 312 (371)
Q Consensus 304 i~~l~~~a~ 312 (371)
|..+++...
T Consensus 205 L~~~l~~l~ 213 (219)
T PF00308_consen 205 LEGALNRLD 213 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877544
No 115
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.69 E-value=3.8e-15 Score=129.01 Aligned_cols=193 Identities=22% Similarity=0.292 Sum_probs=137.2
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
...+.+++++|++..++.|.+... .|-. +.|.+++||+|++|||||++++++..+. |..++.|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~-------~Fl~-G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTE-------QFLQ-GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH-------HHHc-CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 356788999999999999998872 2222 3577899999999999999999999876 5577777766553
Q ss_pred ccccchHHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 153 SKWYGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
. +..++...+.. ..-|||+|++. + .. ...-...|...|++... ..+.+|+|.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e~-------~d~~yk~LKs~LeGgle----~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F-EE-------GDTEYKALKSVLEGGLE----ARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C-CC-------CcHHHHHHHHHhcCccc----cCCCcEEEEEecch
Confidence 2 33344443322 36799999973 1 11 22334566677775443 35889999999998
Q ss_pred CCCccH-----------------------HHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 232 PWDLDE-----------------------AFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 232 ~~~l~~-----------------------~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
.+.+++ +|-.||+..+.|.+|+.++..+|++.++..+++..+ ...
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~------------~e~ 218 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD------------EEE 218 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC------------HHH
Confidence 743321 344599999999999999999999999998887421 112
Q ss_pred H----HHHHHHccCCCHHHHHHHHHH
Q psy6716 289 I----EVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 289 ~----~~la~~~~g~s~~di~~l~~~ 310 (371)
+ ...|..-.|.||+-..++++.
T Consensus 219 l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 219 LRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2 244555667899888887764
No 116
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.69 E-value=2e-15 Score=142.55 Aligned_cols=233 Identities=19% Similarity=0.288 Sum_probs=149.1
Q ss_pred ccChHHHHHHHHHHhhccCCChHHh--hh----cCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-ccc
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYF--DK----LRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWY 156 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~--~~----~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~ 156 (371)
++|++.+++.+...+......-... .. ......++||+||||||||++|+++|..++.+|..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999987763221111000 00 0112367999999999999999999999999999999887653 466
Q ss_pred chH-HHHHHHHHHH----HHHhCCcEEEeccchhhccCCCCCh---hh-hhhhHHHHHHHhhcccc----c-CCCCCCCC
Q psy6716 157 GDS-EKLIRLLFLL----AKELAPSIVFFDEIDSMCSHRSTST---DV-TRRMKSELLCQMDGLAS----V-SNEDPNKS 222 (371)
Q Consensus 157 g~~-~~~~~~~~~~----a~~~~~~il~lDeid~l~~~~~~~~---~~-~~~~~~~ll~~l~~~~~----~-~~~~~~~~ 222 (371)
|.. ...+..++.. .....++||||||||.+.++..+.. +. ...+++.||+.|++... . +...+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 3444444332 2234578999999999987543322 11 12688899999975432 1 22233457
Q ss_pred EEEEeecCCC---------------------------C-----------------------CccHHHHhcccceEEecCC
Q psy6716 223 VLILAATNFP---------------------------W-----------------------DLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 223 v~vI~ttn~~---------------------------~-----------------------~l~~~l~~rf~~~i~~~~p 252 (371)
.++|.|+|-. + .+.|+++.|++.++.+.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 7888888761 0 0336667799999999999
Q ss_pred CHHHHHHHHHHH----HhcCCCCcchhhhhhcccCCCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 253 DQATRVSLLTIF----LQNVKVDKDVNIEVLNVKVDKDVNIEVLAER--LEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 253 ~~~er~~il~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
+.++..+|+..- ++++.-... .....+. .++..++.||+. ...+-.+-|+.+++......+.+.
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~--~~gi~L~-~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFK--MDNVELD-FEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc--cCCeEEE-ECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999998752 322110000 0000111 234457778876 344567889999888877776665
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=3.8e-15 Score=142.94 Aligned_cols=228 Identities=17% Similarity=0.179 Sum_probs=146.9
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTS 153 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~ 153 (371)
...+.++|.++..+.|...+... .. +..+.+++|+||||||||++++.+++.+ +..+++++|....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~------~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPA------LR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHH------hC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34467899999999988877211 11 2334579999999999999999999876 46788898865432
Q ss_pred c----------ccc--------hHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc
Q psy6716 154 K----------WYG--------DSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 154 ~----------~~g--------~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 214 (371)
. +.+ ........+...... ..+.+|+|||+|.+.... ....+..|+..++...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~-- 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP-- 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC--
Confidence 1 101 112223333333332 235799999999996211 1234555555554332
Q ss_pred CCCCCCCCEEEEeecCCCC---CccHHHHhccc-ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 215 SNEDPNKSVLILAATNFPW---DLDEAFRRRLE-KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~-~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
..++.+|+++|..+ .+++.+.+||. ..+.+++++.++..++++..+... +.. ...++..++
T Consensus 171 -----~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~-~~~---------~~~~~~~l~ 235 (394)
T PRK00411 171 -----GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG-FYP---------GVVDDEVLD 235 (394)
T ss_pred -----CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh-ccc---------CCCCHhHHH
Confidence 23678888888763 46778888774 578999999999999999887532 100 013444577
Q ss_pred HHHHHccCC--CHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 291 VLAERLEGY--SSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 291 ~la~~~~g~--s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
.+++.+.+. ..+.+..+|..|+..+..+. ...|+.+|+..|+..+.+
T Consensus 236 ~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~-----------------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 236 LIADLTAREHGDARVAIDLLRRAGLIAEREG-----------------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHHH
Confidence 788877442 34455577777776665542 136888898888887743
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=1e-15 Score=158.59 Aligned_cols=213 Identities=18% Similarity=0.255 Sum_probs=149.1
Q ss_pred HHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-------
Q psy6716 67 NILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET------- 139 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~------- 139 (371)
.+..++......-.++.++|.++.++++.+.+.. ...++++|+||||||||++|+.+|...
T Consensus 164 ~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~ 231 (821)
T CHL00095 164 EFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD 231 (821)
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 3333433333444678899999999999887721 334689999999999999999999875
Q ss_pred ---CCCeEEEeccccc--ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc
Q psy6716 140 ---KSNFFNITSSTLT--SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 140 ---~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 214 (371)
+.+++.++++.+. .++.|+.+..++.++..+....++||||||||.+.+.....+. ....+-|...+.
T Consensus 232 ~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~----- 304 (821)
T CHL00095 232 ILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPALA----- 304 (821)
T ss_pred hhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHh-----
Confidence 3678999988776 4678899999999999998777899999999999875433221 122233333331
Q ss_pred CCCCCCCCEEEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 215 SNEDPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.+.+.+|++|+..+ ..++++.+|| ..+.++.|+.++...|++.....+.-.. ... .++..+
T Consensus 305 -----rg~l~~IgaTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~-------~v~-i~deal 370 (821)
T CHL00095 305 -----RGELQCIGATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHH-------NLS-ISDKAL 370 (821)
T ss_pred -----CCCcEEEEeCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHc-------CCC-CCHHHH
Confidence 44688999998763 4689999999 5689999999999999887654321100 001 234457
Q ss_pred HHHHHHccCCCH-----HHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSS-----ADITIVCRDAA 312 (371)
Q Consensus 290 ~~la~~~~g~s~-----~di~~l~~~a~ 312 (371)
..++..+.+|.+ .-.-.++++|+
T Consensus 371 ~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 371 EAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred HHHHHHhhccCccccCchHHHHHHHHHH
Confidence 777777777644 33444555544
No 119
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.68 E-value=2.9e-16 Score=145.91 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=131.5
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccc---
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSK--- 154 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~--- 154 (371)
+++++|.+..++.+.+.+ ........+|||+|++||||+++|++||..+. .||+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i----------~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV----------SRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHH----------HHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 567999999999999888 44445557799999999999999999998764 58999999987432
Q ss_pred --ccchHHH-------HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCC
Q psy6716 155 --WYGDSEK-------LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKS 222 (371)
Q Consensus 155 --~~g~~~~-------~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~ 222 (371)
++|.... .....+. ...+++||||||+.| +...|..|+..++..... +....+.+
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATA----------PMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHHccccccccCCcccccCCchh---ccCCCeEEeCChhhC----------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 1121100 0011232 334799999999999 778899999988753311 11223457
Q ss_pred EEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHHH----HHHHhcCCCCcchhhhhhc-ccCCCcccHH
Q psy6716 223 VLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSLL----TIFLQNVKVDKDVNIEVLN-VKVDKDVNIE 290 (371)
Q Consensus 223 v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~il----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 290 (371)
++||++|+.. ..+.+.+..|| ..+.+..|+..+|.+-+ .+++..+... .+... .. .+...+.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~----~~~~~~~~-~s~~al~ 215 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRE----LGLPLFPG-FTERARE 215 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHH----hCCCCCCC-CCHHHHH
Confidence 8999998764 34557777788 44677788888887644 4444332110 00000 01 2233355
Q ss_pred HHHHHccCCCHHHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a~~ 313 (371)
.|..+..--+-++|+++++.|..
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHH
Confidence 55555554466777777766654
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=2.6e-15 Score=148.58 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=136.8
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE------------
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI------------ 146 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v------------ 146 (371)
.+|++++|++.+++.|...+. .+..++.+||+||+|+|||++|+++|+.+.+.....
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 478999999999999998882 234557899999999999999999999876532111
Q ss_pred -eccccccc----c--c----chHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcc
Q psy6716 147 -TSSTLTSK----W--Y----GDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL 211 (371)
Q Consensus 147 -~~~~l~~~----~--~----g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 211 (371)
+|..+... + + ......++.+...+... ...|++|||+|.| ....++.|+..|+..
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L----------s~~a~naLLKtLEeP 159 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML----------STAAFNALLKTLEEP 159 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC----------CHHHHHHHHHHHHhC
Confidence 01111000 0 0 01123345555555433 2469999999999 555678888888643
Q ss_pred cccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHH
Q psy6716 212 ASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEV 291 (371)
Q Consensus 212 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
+..+.+|.+|+.++.+.+.+++|+ ..+.+..|+.++....+...+.+.+.. .++..+..
T Consensus 160 --------p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~------------i~~eAl~l 218 (598)
T PRK09111 160 --------PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVE------------VEDEALAL 218 (598)
T ss_pred --------CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHH
Confidence 346677777787888888999999 679999999999999999998877653 34456778
Q ss_pred HHHHccCCCHHHHHHHHHHHH
Q psy6716 292 LAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 292 la~~~~g~s~~di~~l~~~a~ 312 (371)
++..+.| +.+++..+++.+.
T Consensus 219 Ia~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 8888876 7888777776654
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.1e-14 Score=140.69 Aligned_cols=185 Identities=19% Similarity=0.228 Sum_probs=131.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.++..|...+. .+..++.+||+||+|+|||++|+++|+.+...
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 3589999999999999998882 22444679999999999999999999987442
Q ss_pred ----------eEEEecccccccccchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 143 ----------FFNITSSTLTSKWYGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 143 ----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
++.++.... .| ...++.+..... .....|++|||+|.+ ....++.|+..|
T Consensus 82 ~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l----------t~~~~n~LLk~l 145 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML----------TKEAFNSLLKTL 145 (451)
T ss_pred HHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh----------CHHHHHHHHHHh
Confidence 222221110 00 112222222222 124679999999999 455677888888
Q ss_pred hcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 209 DGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 209 ~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
+.. +..+++|++|+.+..+.+.+++|+ ..+.++.++.++....+...+.+.+.. .++..
T Consensus 146 Eep--------~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~------------i~~~a 204 (451)
T PRK06305 146 EEP--------PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIE------------TSREA 204 (451)
T ss_pred hcC--------CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHH
Confidence 653 346677778888889999999999 679999999999999999888776653 34456
Q ss_pred HHHHHHHccCCCHHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~a 311 (371)
+..++..+.| +.+++..+++..
T Consensus 205 l~~L~~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 205 LLPIARAAQG-SLRDAESLYDYV 226 (451)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHH
Confidence 7888888876 666666665544
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=2.4e-15 Score=156.20 Aligned_cols=203 Identities=19% Similarity=0.291 Sum_probs=142.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v 146 (371)
..-.++.++|.+..+.++.+.+. + ....+++|+||||+|||++|+.++... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~----------r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS----------R--RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh----------c--CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34467889999998777777652 1 233678999999999999999999875 5678888
Q ss_pred eccccc--ccccchHHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCE
Q psy6716 147 TSSTLT--SKWYGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV 223 (371)
Q Consensus 147 ~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v 223 (371)
+.+.+. ..+.|+.+..+..++..+... .++||||||||.+.+.....+ .....+.|...+ ....+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~l----------~~g~i 303 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPAL----------ARGEL 303 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchhh----------hcCce
Confidence 877765 457788888899999888654 489999999999986432221 112222222222 14578
Q ss_pred EEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 224 LILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 224 ~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
.+|++|+..+ .+++++.||| ..+.++.|+.+++..|++.+...+...+... ..+..+...+..+.+
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~--------~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVR--------ITDPAIVAAATLSHR 374 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCC--------CCHHHHHHHHHhccc
Confidence 9999998763 4799999999 5689999999999999998877765432211 234455666666655
Q ss_pred CC-----HHHHHHHHHHHH
Q psy6716 299 YS-----SADITIVCRDAA 312 (371)
Q Consensus 299 ~s-----~~di~~l~~~a~ 312 (371)
|. |.---.|+++|+
T Consensus 375 yi~~r~lPdkAidlld~a~ 393 (852)
T TIGR03346 375 YITDRFLPDKAIDLIDEAA 393 (852)
T ss_pred cccccCCchHHHHHHHHHH
Confidence 53 344444555444
No 123
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.68 E-value=1.5e-15 Score=141.46 Aligned_cols=253 Identities=21% Similarity=0.239 Sum_probs=157.0
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhh--cCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccc-hH
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDK--LRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYG-DS 159 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g-~~ 159 (371)
++|++++++.+...+.....+...... ...+++++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998777432111111111 1234589999999999999999999999999999999887753 5555 33
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q psy6716 160 EKLIRLLFLLA--------------------------------------------------------------------- 170 (371)
Q Consensus 160 ~~~~~~~~~~a--------------------------------------------------------------------- 170 (371)
+..++.+|..+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 33333332222
Q ss_pred ----------------------------------------------------------------------HHhCCcEEEe
Q psy6716 171 ----------------------------------------------------------------------KELAPSIVFF 180 (371)
Q Consensus 171 ----------------------------------------------------------------------~~~~~~il~l 180 (371)
...+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124689999
Q ss_pred ccchhhccCCCCCh-hh-hhhhHHHHHHHhhccccc--CCCCCCCCEEEEeecC----CCCCccHHHHhcccceEEecCC
Q psy6716 181 DEIDSMCSHRSTST-DV-TRRMKSELLCQMDGLASV--SNEDPNKSVLILAATN----FPWDLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 181 Deid~l~~~~~~~~-~~-~~~~~~~ll~~l~~~~~~--~~~~~~~~v~vI~ttn----~~~~l~~~l~~rf~~~i~~~~p 252 (371)
||||+++.+..... +. ..-+|..||..+++-... ...-...++++||+.- .|++|-|.|.-||+..+.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999997653211 22 345888999988863221 1223456888887753 4667889999999999999999
Q ss_pred CHHHHHHHH----HHHHhcCCCCcchhhhhh--cccCCCcccHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 253 DQATRVSLL----TIFLQNVKVDKDVNIEVL--NVKVDKDVNIEVLAERL-------EGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 253 ~~~er~~il----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~-------~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
+.++...|| ..+++++.. ..... .+. -.+..+.++|+.+ .+.-.+-|+.++........-..
T Consensus 334 ~~edL~rILteP~nsLikQy~~----Lf~~egv~L~-Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 334 TTDDFERILTEPKNSLIKQYKA----LMKTEGVNIE-FSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred CHHHHHHHhcCChhHHHHHHHH----HHhhcCcEEE-EeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 999988877 222222210 00000 011 1233456666554 34445566666666554444332
Q ss_pred hhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 320 LNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
... . .....|+.+.+...+..+
T Consensus 409 p~~----~-------~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 409 PDL----S-------GQNITIDADYVSKKLGAL 430 (441)
T ss_pred CCC----C-------CCEEEECHHHHHhHHHHH
Confidence 110 0 112367777777776665
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=3.7e-15 Score=134.47 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=98.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc------cccccchHHHH-HH-------------------HHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL------TSKWYGDSEKL-IR-------------------LLFL 168 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l------~~~~~g~~~~~-~~-------------------~~~~ 168 (371)
..++||+||||||||++|+++|..++.+++.++|..- .+.+.+..... .. ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 3579999999999999999999999999999987642 22222111110 00 0111
Q ss_pred HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-CCC-------CCCCCEEEEeecCCC-----CCc
Q psy6716 169 LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-SNE-------DPNKSVLILAATNFP-----WDL 235 (371)
Q Consensus 169 ~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~-------~~~~~v~vI~ttn~~-----~~l 235 (371)
.|. ..+++|+||||+.+ +..+++.|+..|+...-. .+. ....+++||+|+|.. ..+
T Consensus 101 ~A~-~~g~~lllDEi~r~----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 101 LAV-REGFTLVYDEFTRS----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH-HcCCEEEEcchhhC----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 111 24689999999998 677888899888743211 100 123577899999976 256
Q ss_pred cHHHHhcccceEEecCCCHHHHHHHHHHHH
Q psy6716 236 DEAFRRRLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 236 ~~~l~~rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
++++.+|| ..+.++.|+.++-.+|+...+
T Consensus 170 ~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 89999999 779999999999999998765
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=6.1e-15 Score=142.29 Aligned_cols=208 Identities=14% Similarity=0.194 Sum_probs=135.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccccccccchHHH---HHHHHHHHHHHhCCcEEEeccchh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEK---LIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~---~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
..++++|||++|+|||+|++++++++ +..++++++.++...+...... .+...... .....+|+|||++.
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~ 217 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQF 217 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccc
Confidence 34679999999999999999999854 4578888888876654433221 11111111 22467999999998
Q ss_pred hccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC---CccHHHHhccc--ceEEecCCCHHHHHHH
Q psy6716 186 MCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW---DLDEAFRRRLE--KRIYVPIPDQATRVSL 260 (371)
Q Consensus 186 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~--~~i~~~~p~~~er~~i 260 (371)
+.++ ...+..|...++.... ....+|+++...|. .+++.+.+||. .++.+.+|+.++|..+
T Consensus 218 l~~k--------~~~~e~lf~l~N~~~~------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 218 LSYK--------EKTNEIFFTIFNNFIE------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred ccCC--------HHHHHHHHHHHHHHHH------cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 8432 2345556666554443 12334444334443 35788999984 6777899999999999
Q ss_pred HHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccc
Q psy6716 261 LTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAI 340 (371)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 340 (371)
++..+...++. . ..++..++.||..+.| +++.+..++..+...+..... ..+|
T Consensus 284 L~~~~~~~gl~---------~-~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~----------------~~~i 336 (450)
T PRK14087 284 IKKEIKNQNIK---------Q-EVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE----------------EKII 336 (450)
T ss_pred HHHHHHhcCCC---------C-CCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC----------------CCCC
Confidence 99999865431 0 1445568899999987 899999999877644444210 1257
Q ss_pred cHHHHHHHHHhCCC----CCCHHHHHHH
Q psy6716 341 VQADFDEAVRNCPK----TVRPEDAEKF 364 (371)
Q Consensus 341 ~~~d~~~al~~~~~----~~~~~~~~~~ 364 (371)
+.+.+.++++.+.. .++.+.|.+.
T Consensus 337 t~~~v~~~l~~~~~~~~~~~t~~~I~~~ 364 (450)
T PRK14087 337 TIEIVSDLFRDIPTSKLGILNVKKIKEV 364 (450)
T ss_pred CHHHHHHHHhhccccccCCCCHHHHHHH
Confidence 77777777765421 2555665543
No 126
>KOG2028|consensus
Probab=99.68 E-value=1.8e-15 Score=135.66 Aligned_cols=194 Identities=22% Similarity=0.306 Sum_probs=125.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC---eEEEecccccccccchHHHHHHHHHHHHHHh-----CCcEEEeccchhhc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN---FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL-----APSIVFFDEIDSMC 187 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~---~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~il~lDeid~l~ 187 (371)
.+++||||||||||++||.|+.....+ |+.+++.. ...+.++.+|+.++.. ...|||||||+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF- 234 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF- 234 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-
Confidence 469999999999999999999988765 55555433 2345577777777654 3679999999998
Q ss_pred cCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC-CC-CCccHHHHhcccceEEecCCCHHHHHHHHHHHH
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN-FP-WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn-~~-~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
....|..||-.+ ..+.+.+|++|. .| -.|..+|++|+ .++.+...+.++...|+.+-+
T Consensus 235 ---------NksQQD~fLP~V----------E~G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 235 ---------NKSQQDTFLPHV----------ENGDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ---------hhhhhhccccee----------ccCceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHH
Confidence 555566666555 245677887664 33 36789999999 778888888999998888765
Q ss_pred hcCCCCcc--hhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHH
Q psy6716 266 QNVKVDKD--VNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQA 343 (371)
Q Consensus 266 ~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 343 (371)
...+-... .......+ ..++.-++.++..++|-.-..|..|- .+......|.-. ..+..++.+
T Consensus 295 a~l~dser~~~~l~n~s~-~ve~siidyla~lsdGDaR~aLN~Le-ms~~m~~tr~g~-------------~~~~~lSid 359 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSM-FVEDSIIDYLAYLSDGDARAALNALE-MSLSMFCTRSGQ-------------SSRVLLSID 359 (554)
T ss_pred HhhccccccCCCCCCcch-hhhHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHhhcCC-------------cccceecHH
Confidence 53321000 00000011 13344578888888884444443332 222222222210 013478999
Q ss_pred HHHHHHHhC
Q psy6716 344 DFDEAVRNC 352 (371)
Q Consensus 344 d~~~al~~~ 352 (371)
|+.+++++-
T Consensus 360 Dvke~lq~s 368 (554)
T KOG2028|consen 360 DVKEGLQRS 368 (554)
T ss_pred HHHHHHhhc
Confidence 999988764
No 127
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.68 E-value=6e-16 Score=152.41 Aligned_cols=207 Identities=19% Similarity=0.235 Sum_probs=138.1
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccccc-
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKW- 155 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~- 155 (371)
.+.+++|.+..++.+.+.+ ...+..+.+|||+|++||||+++|++|+..+. .||+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i----------~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI----------EVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHH----------HHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 5678999999999999988 44555567899999999999999999999864 599999999875421
Q ss_pred ----cchHHHH-------HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCC
Q psy6716 156 ----YGDSEKL-------IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNK 221 (371)
Q Consensus 156 ----~g~~~~~-------~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~ 221 (371)
+|..... ....|.. ..+++||||||+.| +...|..|+..++.... . +......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGEL----------PLALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhC----------CHHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 2211100 1112333 34899999999999 78889999998874331 1 1223445
Q ss_pred CEEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHHH----HHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 222 SVLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSLL----TIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 222 ~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~il----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
+++||++|+.. ..+.+.+..|+ ..+.+..|+..+|.+-+ .+++.++... .+..... .+...+.
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~----~~~~~~~-~s~~a~~ 395 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRAR----LGLRSLR-LSPAAQA 395 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHH----cCCCCCC-CCHHHHH
Confidence 88999999875 23455666677 45778888888887633 4444432110 0001112 2333456
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
.|..+..--+-++|+++++.|+..+
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 6666665557788888887776544
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.9e-15 Score=145.02 Aligned_cols=194 Identities=19% Similarity=0.234 Sum_probs=147.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-------eEEE-ecc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------FFNI-TSS 149 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------~~~v-~~~ 149 (371)
...|++++|++.+.+.|...+.. ++..++.||+||.|||||++||.+|+.+++. +..+ .|-
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 34799999999999999998832 2444789999999999999999999988663 1111 111
Q ss_pred ccccc-ccc---------hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 150 TLTSK-WYG---------DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 150 ~l~~~-~~g---------~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
.+... +.. ..-..++.+.+.+... ..-|.+|||+|.| +....+.||..++
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLE------ 144 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLE------ 144 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhcccc------
Confidence 11111 110 1122344444444322 2459999999999 7788899999884
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
.++.+|.+|.+|..+..++..+++|+ ..+.+...+.++....+..++.+.++. .++..+..+|+.
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~------------~e~~aL~~ia~~ 209 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGIN------------IEEDALSLIARA 209 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCc------------cCHHHHHHHHHH
Confidence 35779999999999999999999999 668999999999999999999988875 455668899999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q psy6716 296 LEGYSSADITIVCRDAAFM 314 (371)
Q Consensus 296 ~~g~s~~di~~l~~~a~~~ 314 (371)
.+| +.+|...+++.|...
T Consensus 210 a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 210 AEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred cCC-ChhhHHHHHHHHHHc
Confidence 998 899999999887644
No 129
>PRK08727 hypothetical protein; Validated
Probab=99.67 E-value=1.3e-14 Score=128.55 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=127.6
Q ss_pred CCCCccccc-ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 77 TNVKWADIA-GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 77 ~~~~~~~i~-G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
+..+|++++ |.+.....+.... . +.....++|+||+||||||++++++.++ +..+.+++..++.
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~----------~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALA----------A--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHH----------h--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 455777764 4554444443322 1 1233569999999999999999997764 4556666654432
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC-C
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN-F 231 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn-~ 231 (371)
. .....+.... ...+|+|||++.+..+. ..+..++..++.... . +..||.|+| .
T Consensus 82 ~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~--------~~~~~lf~l~n~~~~------~-~~~vI~ts~~~ 136 (233)
T PRK08727 82 G--------RLRDALEALE--GRSLVALDGLESIAGQR--------EDEVALFDFHNRARA------A-GITLLYTARQM 136 (233)
T ss_pred h--------hHHHHHHHHh--cCCEEEEeCcccccCCh--------HHHHHHHHHHHHHHH------c-CCeEEEECCCC
Confidence 1 1222333332 35799999999885432 123344444443322 1 223444444 5
Q ss_pred CCCc---cHHHHhcc--cceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 232 PWDL---DEAFRRRL--EKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 232 ~~~l---~~~l~~rf--~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
|..+ .+.+.+|| ...+.+++|+.+++..+++..+...++. .++..++.|++++.| +.+.+..
T Consensus 137 p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~------------l~~e~~~~La~~~~r-d~r~~l~ 203 (233)
T PRK08727 137 PDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA------------LDEAAIDWLLTHGER-ELAGLVA 203 (233)
T ss_pred hhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhCCC-CHHHHHH
Confidence 5444 68999996 4678999999999999999877655543 456668899999875 4555555
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHh
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRN 351 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 351 (371)
+++.....+... ...||.+.+.+++..
T Consensus 204 ~L~~l~~~~~~~------------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 204 LLDRLDRESLAA------------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHHHHh------------------CCCCCHHHHHHHHhh
Confidence 555443323322 125777777777654
No 130
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.67 E-value=7.9e-15 Score=146.64 Aligned_cols=230 Identities=19% Similarity=0.244 Sum_probs=145.8
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v 146 (371)
...+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 345789999999999988766621 123569999999999999999998765 3478999
Q ss_pred ecccccc-------cccchHHHH----HHHHHH----------HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHH
Q psy6716 147 TSSTLTS-------KWYGDSEKL----IRLLFL----------LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELL 205 (371)
Q Consensus 147 ~~~~l~~-------~~~g~~~~~----~~~~~~----------~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll 205 (371)
+|..+.. .+++..... ....+. ......+++|||||++.| +...+..|+
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L----------d~~~Q~~Ll 286 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL----------DPLLQNKLL 286 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC----------CHHHHHHHH
Confidence 9876521 111111000 000000 111334789999999999 667788888
Q ss_pred HHhhccccc--C------------------CCCCCCCEEEEe-ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHH
Q psy6716 206 CQMDGLASV--S------------------NEDPNKSVLILA-ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 206 ~~l~~~~~~--~------------------~~~~~~~v~vI~-ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~ 264 (371)
..++..... + ....+.++++|+ |++.++.+++++++||. .+.+++++.+++..|++..
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHH
Confidence 888642200 0 001233455555 55667889999999994 6788999999999999999
Q ss_pred HhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh-hcCCcccccCCCcccccccccHH
Q psy6716 265 LQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYL-NQNPAVAMKDIPDKELDKAIVQA 343 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ 343 (371)
+...+.. .++..++.|+..+. .++.....+..+...++.+.. ... ......|+.+
T Consensus 366 a~~~~v~------------ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~----------~~~~~~I~~e 421 (615)
T TIGR02903 366 AEKINVH------------LAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGK----------ENDKVTITQD 421 (615)
T ss_pred HHHcCCC------------CCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhcc----------CCCCeeECHH
Confidence 8865431 23445666776654 344444444444433333321 000 0112479999
Q ss_pred HHHHHHHhCC
Q psy6716 344 DFDEAVRNCP 353 (371)
Q Consensus 344 d~~~al~~~~ 353 (371)
|+.+++..-+
T Consensus 422 dv~~~l~~~r 431 (615)
T TIGR02903 422 DVYEVIQISR 431 (615)
T ss_pred HHHHHhCCCc
Confidence 9999998754
No 131
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.7e-15 Score=140.76 Aligned_cols=191 Identities=16% Similarity=0.180 Sum_probs=131.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc-------c
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS-------T 150 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~-------~ 150 (371)
..+|++++|++.+++.+...+ .. +..++++|||||||+|||++|+++++.+..+.....+. +
T Consensus 13 P~~~~~iig~~~~~~~l~~~i----------~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAI----------EN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHH----------Hc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 457999999999999999888 22 34457899999999999999999999875421110000 0
Q ss_pred ccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
+.. ........++.++..+... .+.+|+|||+|.+ ....++.|+..++.. +...++|
T Consensus 82 l~~-~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l----------~~~~~~~ll~~le~~--------~~~~~~I 142 (367)
T PRK14970 82 LDA-ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML----------SSAAFNAFLKTLEEP--------PAHAIFI 142 (367)
T ss_pred ecc-ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc----------CHHHHHHHHHHHhCC--------CCceEEE
Confidence 000 0001123444555544332 2469999999988 344566777777542 3345666
Q ss_pred eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 227 AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
.+++.+..+.+++.+|+ ..+.+++|+.++...++...+.+.+.. .++..++.++..+.| +.+.+..
T Consensus 143 l~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~------------i~~~al~~l~~~~~g-dlr~~~~ 208 (367)
T PRK14970 143 LATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIK------------FEDDALHIIAQKADG-ALRDALS 208 (367)
T ss_pred EEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhCCC-CHHHHHH
Confidence 67777788999999999 568999999999999999888877653 345567888888765 6666666
Q ss_pred HHHHHH
Q psy6716 307 VCRDAA 312 (371)
Q Consensus 307 l~~~a~ 312 (371)
.++...
T Consensus 209 ~lekl~ 214 (367)
T PRK14970 209 IFDRVV 214 (367)
T ss_pred HHHHHH
Confidence 665443
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=1.2e-15 Score=154.55 Aligned_cols=222 Identities=19% Similarity=0.220 Sum_probs=149.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-----cccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-----KWYG 157 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-----~~~g 157 (371)
.++|++.+++.|...+..... ......+|..++||+||||||||.+|+++|..++.+++.++|+++.. .++|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~---gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc---cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998843210 00111244457999999999999999999999999999999987643 2222
Q ss_pred hHH-----HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEEeec
Q psy6716 158 DSE-----KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLILAAT 229 (371)
Q Consensus 158 ~~~-----~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI~tt 229 (371)
... .....+....+..+.+||||||||.+ ...+++.|+..|+..... +....-.+++||+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 110 00112233334556799999999999 677899999999854322 112334678899999
Q ss_pred CCC-------------------------CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCC
Q psy6716 230 NFP-------------------------WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVD 284 (371)
Q Consensus 230 n~~-------------------------~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
|.- ..+.|+++.|++.++.|++++.++...|+..++.+..-.. ......+. .
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l--~~~~i~l~-~ 682 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL--DQKGVSLE-V 682 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCce-E
Confidence 932 1256888899999999999999999999988876432110 00001111 2
Q ss_pred CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHh
Q psy6716 285 KDVNIEVLAERL--EGYSSADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 285 ~~~~~~~la~~~--~g~s~~di~~l~~~a~~~~~~~~~ 320 (371)
++..++.|+... ..+-.+.|+.+++.-....+.+.+
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 344466777542 234457888888877777777664
No 133
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.67 E-value=1.5e-16 Score=155.06 Aligned_cols=262 Identities=16% Similarity=0.202 Sum_probs=162.6
Q ss_pred CCCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHH
Q psy6716 17 HLPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYE 96 (371)
Q Consensus 17 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~ 96 (371)
+.....++++. .++.+|+.||.+...+...++.++...........+.... ....+..++|.+..++.+..
T Consensus 83 ~~~~~~~~a~~-~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l~~~~~~l~~~~--------~~~~~~~lig~s~~~~~l~~ 153 (445)
T TIGR02915 83 DDRENAVKAIG-LGAYDFYQKPIDPDVLKLIVDRAFHLYTLETENRRLQSAL--------GGTALRGLITSSPGMQKICR 153 (445)
T ss_pred CCHHHHHHHHH-CCccEEEeCCCCHHHHHHHHhhhhhhhhhHHHHHHhhhhh--------hcccccceeecCHHHHHHHH
Confidence 34556677777 6788999999988888777777665432222111111111 11134568888888888887
Q ss_pred HhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccccc-----chHHHH----HH
Q psy6716 97 AIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKWY-----GDSEKL----IR 164 (371)
Q Consensus 97 ~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~~-----g~~~~~----~~ 164 (371)
.+ ........+++|+|++||||+++|++++.... .+|+.++|..+..... |..... ..
T Consensus 154 ~i----------~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~ 223 (445)
T TIGR02915 154 TI----------EKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVK 223 (445)
T ss_pred HH----------HHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCcc
Confidence 76 33334446799999999999999999998764 5899999998753321 110000 00
Q ss_pred HHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEEEeecCCC-------CC
Q psy6716 165 LLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLILAATNFP-------WD 234 (371)
Q Consensus 165 ~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~vI~ttn~~-------~~ 234 (371)
..........+++||||||+.| +...|..|+..++.... . +....+.++++|++|+.. ..
T Consensus 224 ~~~g~~~~a~~gtl~l~~i~~l----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 224 QTLGKIEYAHGGTLFLDEIGDL----------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCceeECCCCEEEEechhhC----------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 0000111234789999999999 77889999998874321 1 112334578999999875 24
Q ss_pred ccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 235 LDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 235 l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+.+.|..|+ ..+.+..|+..+|.+ ++.+++..+... .+..... .++..+..|..+..--+.++|+++++.
T Consensus 294 ~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~----~~~~~~~-~~~~a~~~L~~~~wpgNvreL~~~i~~ 367 (445)
T TIGR02915 294 FREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARE----LKRKTKG-FTDDALRALEAHAWPGNVRELENKVKR 367 (445)
T ss_pred ccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHH----hCCCCCC-CCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 556666777 557888889988887 344444432210 0000011 233345666666555567778887777
Q ss_pred HHH
Q psy6716 311 AAF 313 (371)
Q Consensus 311 a~~ 313 (371)
|..
T Consensus 368 a~~ 370 (445)
T TIGR02915 368 AVI 370 (445)
T ss_pred HHH
Confidence 764
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.67 E-value=4.9e-15 Score=138.05 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=125.2
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----CeEEEecccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-----NFFNITSSTLTS 153 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~v~~~~l~~ 153 (371)
.+|++++|.+.++..+..++ ... . .++++|+||||||||++++++++.+.. .++.+++++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i----------~~~-~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYV----------KEK-N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHH----------hCC-C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 47899999999999999887 221 1 235899999999999999999998632 345554443211
Q ss_pred cccchHHHHHHH-HHHHHHHh-----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 154 KWYGDSEKLIRL-LFLLAKEL-----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 154 ~~~g~~~~~~~~-~~~~a~~~-----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
...+.. +...+... .+.+|+|||+|.+ ....+..|+..++... ..+.+|.
T Consensus 82 ------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l----------~~~~~~~L~~~le~~~--------~~~~lIl 137 (319)
T PRK00440 82 ------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL----------TSDAQQALRRTMEMYS--------QNTRFIL 137 (319)
T ss_pred ------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC----------CHHHHHHHHHHHhcCC--------CCCeEEE
Confidence 111111 11222211 2459999999998 3344556666665432 2345666
Q ss_pred ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 228 ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 228 ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
++|.+..+.+.+.+|+ ..+.+++|+.++...+++.++...+.. .++..++.++..+.| +.+.+...
T Consensus 138 ~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~------------i~~~al~~l~~~~~g-d~r~~~~~ 203 (319)
T PRK00440 138 SCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIE------------ITDDALEAIYYVSEG-DMRKAINA 203 (319)
T ss_pred EeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-CHHHHHHH
Confidence 7787888888899998 569999999999999999999877653 345568888888776 55555555
Q ss_pred HHHH
Q psy6716 308 CRDA 311 (371)
Q Consensus 308 ~~~a 311 (371)
++.+
T Consensus 204 l~~~ 207 (319)
T PRK00440 204 LQAA 207 (319)
T ss_pred HHHH
Confidence 4433
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=5.9e-15 Score=140.95 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=129.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCe-E---------EEe
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF-F---------NIT 147 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~-~---------~v~ 147 (371)
..+|++++|++.+++.|+..+ . .+..++.+||+||||+|||++|+++|+.+.+.- . .-.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~----------~-~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSL----------R-MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CCcHhhccChHHHHHHHHHHH----------H-hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 447999999999999998887 2 224456799999999999999999999886521 0 000
Q ss_pred ccc------ccc-------cccc---hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHH
Q psy6716 148 SST------LTS-------KWYG---DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207 (371)
Q Consensus 148 ~~~------l~~-------~~~g---~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~ 207 (371)
|.. +.. .+-+ .....++.+...+... ...+++|||+|.+ ....++.|+..
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l----------~~~~~~~LLk~ 150 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML----------SIAAFNAFLKT 150 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC----------CHHHHHHHHHH
Confidence 100 000 0001 0123344443333211 2359999999999 44456777777
Q ss_pred hhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 208 MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 208 l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
++.. +..+++|.+|+.+..+.+.+.+|+ ..+.+++++.++....+...+...+.. .++.
T Consensus 151 LEep--------~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~------------i~~~ 209 (397)
T PRK14955 151 LEEP--------PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGIS------------VDAD 209 (397)
T ss_pred HhcC--------CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCC------------CCHH
Confidence 7533 335566666677788888999999 578999999999998888888765542 3455
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
.++.++..+.| +.+.+...++.+.
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 67888888876 6666666666543
No 136
>PRK06620 hypothetical protein; Validated
Probab=99.66 E-value=1.3e-14 Score=126.51 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=113.5
Q ss_pred CCCCCccccc-C--hHHHHHHHHHHhhccCCChHHhhhcC-CC-CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 76 ETNVKWADIA-G--LDDAKDLLYEAIVLPSIIPAYFDKLR-RP-WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 76 ~~~~~~~~i~-G--~~~~~~~l~~~i~~~~~~~~~~~~~~-~~-~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
.+..+|++++ | ...+...+++... ..+ .| .+.++||||||+||||+++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~----------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC----------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH----------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 4556788863 3 3445555555431 111 12 2569999999999999999999887653321 110
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
. . ... .....+|+|||||.+ ... .|...++.+.. .+..+||+++.
T Consensus 78 ~-------~----~~~-----~~~~d~lliDdi~~~----------~~~---~lf~l~N~~~e------~g~~ilits~~ 122 (214)
T PRK06620 78 F-------N----EEI-----LEKYNAFIIEDIENW----------QEP---ALLHIFNIINE------KQKYLLLTSSD 122 (214)
T ss_pred h-------c----hhH-----HhcCCEEEEeccccc----------hHH---HHHHHHHHHHh------cCCEEEEEcCC
Confidence 0 0 011 113469999999965 111 33333333322 33557777776
Q ss_pred CCCC--ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 231 FPWD--LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 231 ~~~~--l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
.|.. + +.+++|+. .++.+.+|+.+++..+++..+...++. .++..++.|+.+..| +.+.+..
T Consensus 123 ~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~------------l~~ev~~~L~~~~~~-d~r~l~~ 188 (214)
T PRK06620 123 KSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT------------ISRQIIDFLLVNLPR-EYSKIIE 188 (214)
T ss_pred Cccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHccC-CHHHHHH
Confidence 6654 5 78999984 378999999999999999988765543 456668899999986 7777777
Q ss_pred HHHHH
Q psy6716 307 VCRDA 311 (371)
Q Consensus 307 l~~~a 311 (371)
+++..
T Consensus 189 ~l~~l 193 (214)
T PRK06620 189 ILENI 193 (214)
T ss_pred HHHHH
Confidence 77764
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.5e-14 Score=142.54 Aligned_cols=190 Identities=18% Similarity=0.170 Sum_probs=133.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE----Eecc----
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN----ITSS---- 149 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~----v~~~---- 149 (371)
...|++++|++.++..|...+.. +...+++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 35789999999999999988832 2233679999999999999999999988652100 0010
Q ss_pred ----------ccc--ccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc
Q psy6716 150 ----------TLT--SKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 150 ----------~l~--~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 213 (371)
++. ..........++.+...+... ...|++|||+|.| ....++.|+..|+..
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L----------t~~a~naLLK~LEeP-- 148 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML----------STAAFNALLKTLEEP-- 148 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc----------CHHHHHHHHHHHhcC--
Confidence 000 000112234456666555432 2459999999999 556778888888643
Q ss_pred cCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHH
Q psy6716 214 VSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLA 293 (371)
Q Consensus 214 ~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 293 (371)
+..+++|++|+.+..+.+.+++|+ ..+.|+.++.++....+..++.+.+.. .+...+..++
T Consensus 149 ------p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~------------is~~al~~La 209 (620)
T PRK14948 149 ------PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIE------------IEPEALTLVA 209 (620)
T ss_pred ------CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCC------------CCHHHHHHHH
Confidence 446777878888888999999999 678999999998888888888776542 2334577888
Q ss_pred HHccCCCHHHHHHHHHH
Q psy6716 294 ERLEGYSSADITIVCRD 310 (371)
Q Consensus 294 ~~~~g~s~~di~~l~~~ 310 (371)
+.+.| +.+++..+++.
T Consensus 210 ~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 210 QRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 88876 45666555553
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=3.2e-15 Score=153.13 Aligned_cols=221 Identities=21% Similarity=0.251 Sum_probs=150.8
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc-------
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK------- 154 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~------- 154 (371)
..++|++.+++.+...+..... .+.....|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~---g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRA---GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 3589999999999988732100 001112344468999999999999999999999999999999876432
Q ss_pred -----ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEE
Q psy6716 155 -----WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLIL 226 (371)
Q Consensus 155 -----~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI 226 (371)
|+|... ...+....+..+.+||+|||||.+ ...+++.|++.|+...-. +....-.+++||
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 222111 122334445566789999999999 667889999999864322 212334578899
Q ss_pred eecCCCC-------------------------CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q psy6716 227 AATNFPW-------------------------DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNV 281 (371)
Q Consensus 227 ~ttn~~~-------------------------~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~ 281 (371)
+|||... .+.|+++.|++.++.|.+.+.++..+|++..+.+...... .....+
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~--~~~~~l 676 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN--EKNIKL 676 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH--hCCCeE
Confidence 9998641 2467888899999999999999999999998875321000 000011
Q ss_pred cCCCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHh
Q psy6716 282 KVDKDVNIEVLAER--LEGYSSADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 282 ~~~~~~~~~~la~~--~~g~s~~di~~l~~~a~~~~~~~~~ 320 (371)
. .++..++.|+.. ...+..+.|+.+++......+.+.+
T Consensus 677 ~-i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 677 E-LTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred E-eCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 2 234456677775 3445678888888877777766654
No 139
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=1.9e-14 Score=127.58 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=114.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
+..+++|+||+|+|||||+++++++. +..+++++..++... ...+.+... ...+|+|||++.+.++
T Consensus 44 ~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~- 112 (234)
T PRK05642 44 TESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGK- 112 (234)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCC-
Confidence 34679999999999999999998754 567788887766432 112222222 2358999999988442
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~ 265 (371)
...+..|+..++.... .+..+|++++..|.. ..+.+++||. .++.+.+|+.+++..+++..+
T Consensus 113 -------~~~~~~Lf~l~n~~~~------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 113 -------ADWEEALFHLFNRLRD------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred -------hHHHHHHHHHHHHHHh------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 2234456666654432 234566666655633 3688999984 667789999999999999666
Q ss_pred hcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy6716 266 QNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLR 317 (371)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~ 317 (371)
...++. .++..++.|+++..+ +.+.+..+++.....++.
T Consensus 180 ~~~~~~------------l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 180 SRRGLH------------LTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHcCCC------------CCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 554442 445668899999886 788888887765443333
No 140
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.65 E-value=7.6e-16 Score=151.70 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=132.7
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTS 153 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~ 153 (371)
....|++++|.+..++.+.+.+ ++.+....+|||+|++||||+++|+++|..+. .||+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~----------~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA----------RKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHH----------HHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4568999999999998888777 33444456799999999999999999998764 5899999998764
Q ss_pred cc-----cchHH-------HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc--ccCC-CC
Q psy6716 154 KW-----YGDSE-------KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA--SVSN-ED 218 (371)
Q Consensus 154 ~~-----~g~~~-------~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~-~~ 218 (371)
.. +|... .....+|..+ .+++||||||+.| +...|..|+..++... ..+. ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEM----------SPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhC----------CHHHHHHHHHHHhcCCcccCCCCcc
Confidence 21 22110 0111234433 3799999999999 7788999999887532 1111 12
Q ss_pred CCCCEEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHHH----HHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 219 PNKSVLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSLL----TIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 219 ~~~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~il----~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
...+++||++|+.+ ..+.+.+..|+ ..+.+..|+..+|.+-+ .+++..+... .+..... .++.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~----~g~~~~~-ls~~ 409 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADE----QGVPRPK-LAAD 409 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHH----cCCCCCC-cCHH
Confidence 34578899988765 23456677787 45888888888887533 3444332110 0000011 1222
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
.+..|..+...-+-++|++++.+|..
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34455544433355666666666543
No 141
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.65 E-value=7.5e-15 Score=145.89 Aligned_cols=221 Identities=21% Similarity=0.190 Sum_probs=139.6
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEeccc
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSST 150 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~~ 150 (371)
.+.|+|.++.++.|...+.-. ... ..+...++|+|+||||||++++.+.+++ ...+++|+|..
T Consensus 754 PD~LPhREeEIeeLasfL~pa------Ikg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESG------IKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHH------Hhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 357999999999999888321 111 1232335799999999999999997765 24578999965
Q ss_pred cccccc----------------c-hHHHHHHHHHHHHHH--hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcc
Q psy6716 151 LTSKWY----------------G-DSEKLIRLLFLLAKE--LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL 211 (371)
Q Consensus 151 l~~~~~----------------g-~~~~~~~~~~~~a~~--~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 211 (371)
+..... | .....+..+|..... ....||+|||||.|... .+..|+..++..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR~~ 896 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFDWP 896 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------HHHHHHHHHHHh
Confidence 432210 1 122344555554422 12459999999999542 122333333321
Q ss_pred cccCCCCCCCCEEEEeecCCC---CCccHHHHhcccc-eEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 212 ASVSNEDPNKSVLILAATNFP---WDLDEAFRRRLEK-RIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 212 ~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
.. ....+.||+++|.. ..+++.+.+||.. .+.|++++.+++.+|++..+..... +.++.
T Consensus 897 ~~-----s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~g------------VLdDd 959 (1164)
T PTZ00112 897 TK-----INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKE------------IIDHT 959 (1164)
T ss_pred hc-----cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCC------------CCCHH
Confidence 11 23478899999864 4567888888854 4788999999999999998875321 14455
Q ss_pred cHHHHHHHccCCCHHHHHHHH---HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCC
Q psy6716 288 NIEVLAERLEGYSSADITIVC---RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTV 356 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 356 (371)
.++.+|+.+.. ..+|++.++ +.|... + . ...|+.+|+.+|+..+..+.
T Consensus 960 AIELIArkVAq-~SGDARKALDILRrAgEi---k---e--------------gskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 960 AIQLCARKVAN-VSGDIRKALQICRKAFEN---K---R--------------GQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred HHHHHHHhhhh-cCCHHHHHHHHHHHHHhh---c---C--------------CCccCHHHHHHHHHHHHhhh
Confidence 57777775543 234555444 444321 0 0 12688889998888775444
No 142
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.2e-14 Score=133.92 Aligned_cols=204 Identities=21% Similarity=0.310 Sum_probs=139.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETK-----SNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~ 187 (371)
.+.++++||||+|+|||||++|++++.. ..+++++...+...++......-..-|+... +-.+|+||||+.+.
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~ 188 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLA 188 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhc
Confidence 3557799999999999999999998762 2577787777766555444333333444444 45699999999996
Q ss_pred cCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc---cHHHHhccc--ceEEecCCCHHHHHHHHH
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL---DEAFRRRLE--KRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l---~~~l~~rf~--~~i~~~~p~~~er~~il~ 262 (371)
++ .+.+..|...++.+.. ..+.+|+++...|..+ .+.|++||. .++.+.+|+.+.|..|++
T Consensus 189 gk--------~~~qeefFh~FN~l~~------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 189 GK--------ERTQEEFFHTFNALLE------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred CC--------hhHHHHHHHHHHHHHh------cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 64 2335566666555543 2234666665666554 589999985 566789999999999999
Q ss_pred HHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccH
Q psy6716 263 IFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQ 342 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 342 (371)
..+...++. .++.....+|.+... +.+++..+++.....+.... ..||.
T Consensus 255 kka~~~~~~------------i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~------------------~~iTi 303 (408)
T COG0593 255 KKAEDRGIE------------IPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK------------------RAITI 303 (408)
T ss_pred HHHHhcCCC------------CCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC------------------ccCcH
Confidence 988877764 556668889998874 78888887776654444432 24666
Q ss_pred HHHHHHHHhCCCC---CCHHHHHH
Q psy6716 343 ADFDEAVRNCPKT---VRPEDAEK 363 (371)
Q Consensus 343 ~d~~~al~~~~~~---~~~~~~~~ 363 (371)
+-+.++++..... ++.++|++
T Consensus 304 ~~v~e~L~~~~~~~~~itie~I~~ 327 (408)
T COG0593 304 DLVKEILKDLLRAGEKITIEDIQK 327 (408)
T ss_pred HHHHHHHHHhhcccccCCHHHHHH
Confidence 6666666554333 55555544
No 143
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=3.2e-16 Score=145.75 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=135.9
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEeccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSSTLT 152 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~l~ 152 (371)
....+.+++|.+...+++++.+ +.......+||++|++||||+.+|++||..+ ..||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqi----------k~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQI----------KAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHH----------HhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3446788999999999999988 3344555779999999999999999998654 4599999999887
Q ss_pred cccc-----ch-------HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCC
Q psy6716 153 SKWY-----GD-------SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNE 217 (371)
Q Consensus 153 ~~~~-----g~-------~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~ 217 (371)
.... |. .......+|+.|. +++||||||+.| +...|..|+..|+..... +..
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~L----------P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRL----------PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhC----------CHhHHHHHHHHHHcCceEecCCCC
Confidence 5322 21 1222334555555 899999999999 778899999999863322 233
Q ss_pred CCCCCEEEEeecCCCCCccHHHHh------cccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 218 DPNKSVLILAATNFPWDLDEAFRR------RLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 218 ~~~~~v~vI~ttn~~~~l~~~l~~------rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
....+|++|++|+. .++..++. |. ..+.+.+|+.+||.. ++++++..+...... ........
T Consensus 210 ~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~-----~~~~~~~~ 281 (403)
T COG1221 210 PRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGL-----PLSVDSPE 281 (403)
T ss_pred CcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCC-----CCCCCCHH
Confidence 56779999999986 45544444 33 345667777777754 445555433221100 00001111
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a~~~~~ 316 (371)
.+..+-....--+-+++++++++++..+.
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 22233333222267888888888765553
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.4e-14 Score=140.13 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=130.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE----------Ee
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN----------IT 147 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~----------v~ 147 (371)
..+|++|+|++.+++.|+..+ . .+..++++||+||+|+|||++|+.+|+.+.+.--. -.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i----------~-~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSL----------R-MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------H-cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 447999999999999999887 2 22444679999999999999999999988662100 01
Q ss_pred cc------cccc-------cccch---HHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHH
Q psy6716 148 SS------TLTS-------KWYGD---SEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207 (371)
Q Consensus 148 ~~------~l~~-------~~~g~---~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~ 207 (371)
|. .+.. .+-+. ....++.+...+.. ...-|++|||+|.| ....++.|+..
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L----------t~~a~naLLK~ 150 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML----------STAAFNAFLKT 150 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc----------CHHHHHHHHHH
Confidence 10 0000 00010 12334444443321 12459999999999 44557788888
Q ss_pred hhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 208 MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 208 l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
|+.. +..+++|.+|+.+..+.+.+.+|+ ..+.+..++.++....+...+...+.. .++.
T Consensus 151 LEeP--------p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~------------I~~e 209 (620)
T PRK14954 151 LEEP--------PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQ------------IDAD 209 (620)
T ss_pred HhCC--------CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCC------------CCHH
Confidence 8643 335566666677788989999999 789999999999998888888766642 3455
Q ss_pred cHHHHHHHccCCCHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.++.++..+.| +.+++...++.
T Consensus 210 al~~La~~s~G-dlr~al~eLeK 231 (620)
T PRK14954 210 ALQLIARKAQG-SMRDAQSILDQ 231 (620)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHH
Confidence 67888888876 56665555554
No 145
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.64 E-value=4.6e-15 Score=138.27 Aligned_cols=179 Identities=27% Similarity=0.367 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhc--CCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccc-h
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKL--RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYG-D 158 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g-~ 158 (371)
.++|++++++.+..++.....+....... ...+.++||+||||+|||++|+++|..++.+|+.++++.+.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 38999999999988774321111000111 123578999999999999999999999999999999987764 5666 3
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q psy6716 159 SEKLIRLLFLLA-------------------------------------------------------------------- 170 (371)
Q Consensus 159 ~~~~~~~~~~~a-------------------------------------------------------------------- 170 (371)
.+..++.++..|
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 333333333322
Q ss_pred ---------------------------------------------------------------------H-HhCCcEEEe
Q psy6716 171 ---------------------------------------------------------------------K-ELAPSIVFF 180 (371)
Q Consensus 171 ---------------------------------------------------------------------~-~~~~~il~l 180 (371)
. ....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 124689999
Q ss_pred ccchhhccCCCCCh-hh-hhhhHHHHHHHhhccccc--CCCCCCCCEEEEeec----CCCCCccHHHHhcccceEEecCC
Q psy6716 181 DEIDSMCSHRSTST-DV-TRRMKSELLCQMDGLASV--SNEDPNKSVLILAAT----NFPWDLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 181 Deid~l~~~~~~~~-~~-~~~~~~~ll~~l~~~~~~--~~~~~~~~v~vI~tt----n~~~~l~~~l~~rf~~~i~~~~p 252 (371)
||||+++.+..... +. ..-+|..||..+++-.-. ...-...++++||+. ..|++|-|+|.-||+..+.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999997643221 22 245888999988863221 112335688888775 34567889999999999999999
Q ss_pred CHHHHHHHH
Q psy6716 253 DQATRVSLL 261 (371)
Q Consensus 253 ~~~er~~il 261 (371)
+.++..+||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 146
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.63 E-value=4.2e-15 Score=124.43 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=87.1
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccc-----c
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSK-----W 155 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~-----~ 155 (371)
|+|.+..++.+.+.+ +.....+.+|||+|++||||+.+|++||+.+. .||+.|+|+.+... +
T Consensus 1 liG~s~~m~~~~~~~----------~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQA----------KRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHH----------HHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHH----------HHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888887 55555567899999999999999999999874 59999999987543 2
Q ss_pred cchHH-------HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--cC-CCCCCCCEEE
Q psy6716 156 YGDSE-------KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--VS-NEDPNKSVLI 225 (371)
Q Consensus 156 ~g~~~-------~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-~~~~~~~v~v 225 (371)
+|... .....++..|. .++||||||+.| +..+|..|+..|+.... .+ ....+.+++|
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDL----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hccccccccccccccCCceeecc---ceEEeecchhhh----------HHHHHHHHHHHHhhchhccccccccccccceE
Confidence 22111 01124455554 899999999999 88999999999984332 22 2234568999
Q ss_pred EeecCCC
Q psy6716 226 LAATNFP 232 (371)
Q Consensus 226 I~ttn~~ 232 (371)
|++|+.+
T Consensus 138 I~st~~~ 144 (168)
T PF00158_consen 138 IASTSKD 144 (168)
T ss_dssp EEEESS-
T ss_pred EeecCcC
Confidence 9999973
No 147
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.63 E-value=8.4e-15 Score=135.15 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=109.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCC-ccEEEEcCCCchHHHHHHHHHHHcC-------CCe--EEE
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPW-KGVLLVGPPGTGKTMLAKAAATETK-------SNF--FNI 146 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~-~~vLl~Gp~GtGKt~la~~la~~~~-------~~~--~~v 146 (371)
....|++++|++.+++.+.-... .+. .++||.|+||||||++|++++..+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~-------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI-------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh-------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 34578999999999998875441 122 5799999999999999999999873 211 111
Q ss_pred ecc-c------------------cc-----ccccchH--HHHH---HHHHHH--HHHhCCcEEEeccchhhccCCCCChh
Q psy6716 147 TSS-T------------------LT-----SKWYGDS--EKLI---RLLFLL--AKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 147 ~~~-~------------------l~-----~~~~g~~--~~~~---~~~~~~--a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
.+. + +. ...+|.. ...+ ...|.. ......++|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 000 0 00 0122210 0000 001110 01122579999999999
Q ss_pred hhhhhHHHHHHHhhccc----ccC-CCCCCCCEEEEeecCCCC-CccHHHHhcccceEEecCCCH-HHHHHHHHHHH
Q psy6716 196 VTRRMKSELLCQMDGLA----SVS-NEDPNKSVLILAATNFPW-DLDEAFRRRLEKRIYVPIPDQ-ATRVSLLTIFL 265 (371)
Q Consensus 196 ~~~~~~~~ll~~l~~~~----~~~-~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~~~~p~~-~er~~il~~~~ 265 (371)
+...+..|+..|+... ..+ ....+.++++++++|..+ .++++++.||...+.++.|.. ++|.+++....
T Consensus 141 -~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 -EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 7788999999987432 111 113456889999999754 589999999999999988766 99999998754
No 148
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.63 E-value=1.1e-15 Score=151.69 Aligned_cols=206 Identities=21% Similarity=0.219 Sum_probs=133.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~ 154 (371)
...+++++|.+..++.+.+.+ ........+|||+|++||||+++|++||..+ +.||+.++|..+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~----------~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA----------RVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHH----------HHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 356889999999999999888 4444555779999999999999999999986 459999999987532
Q ss_pred cc-----chHHHH-------HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCC
Q psy6716 155 WY-----GDSEKL-------IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDP 219 (371)
Q Consensus 155 ~~-----g~~~~~-------~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~ 219 (371)
.. |..... ....+. ...+++||||||+.| +...|..|+..++..... +....
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEI----------SPAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhC----------CHHHHHHHHHHHhcCcEEECCCCceE
Confidence 21 111000 001122 224789999999999 778899999998753311 11222
Q ss_pred CCCEEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 220 NKSVLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 220 ~~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
..++++|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+ ++.+++..+.... +. ... .++..
T Consensus 329 ~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~----~~-~~~-~s~~a 401 (534)
T TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNREN----GR-PLT-ITPSA 401 (534)
T ss_pred eecEEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHc----CC-CCC-CCHHH
Confidence 3468999998864 23455666677 345666677766654 5556655432100 00 111 23334
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
+..|..+...-+.++|+++++.|..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHH
Confidence 5666666555567777777777654
No 149
>KOG0741|consensus
Probab=99.62 E-value=5.3e-15 Score=138.37 Aligned_cols=231 Identities=19% Similarity=0.200 Sum_probs=147.9
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcCCCchH--------------HHHHHHHHhcCCCh--HHHHHHHHHHhhhhccCC
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQDKPVN--------------EMYEAILKKLKLDP--EEKKLARNILSEVLKAET 77 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 77 (371)
.|++|.|++|+++.+++...++.+........ ..|-.+++.+++.. .+..+.+-..+.++.+++
T Consensus 435 lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~ 514 (744)
T KOG0741|consen 435 LTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGP 514 (744)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecc
Confidence 58999999999999888766666554433212 22233333333322 112223333333333333
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe-ccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT-SSTLTSKWY 156 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~-~~~l~~~~~ 156 (371)
.++ .+.+.-..++ ......-..+-.++||+||||+|||.||-.+|..++.||+.+- +.++.+..-
T Consensus 515 ~v~--------~il~~G~llv------~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sE 580 (744)
T KOG0741|consen 515 PVT--------RILDDGKLLV------QQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSE 580 (744)
T ss_pred cHH--------HHHhhHHHHH------HHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccH
Confidence 221 1111111111 0000111244568999999999999999999999999999864 444444333
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCcc
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD 236 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~ 236 (371)
...-..+..+|..|.+..-++|++|+|+.|...-.-++..++.++..|+..+..... ...+.+|++||...+-|.
T Consensus 581 saKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp-----kg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 581 SAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP-----KGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred HHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC-----CCceEEEEecccHHHHHH
Confidence 344567899999999999999999999999887777778888888888888865443 234788888888765554
Q ss_pred -HHHHhcccceEEecCCCH-HHHHHHHHH
Q psy6716 237 -EAFRRRLEKRIYVPIPDQ-ATRVSLLTI 263 (371)
Q Consensus 237 -~~l~~rf~~~i~~~~p~~-~er~~il~~ 263 (371)
-.+...|+..+++|..+. ++..+++..
T Consensus 656 ~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 656 EMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 356668999999987654 555555543
No 150
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.62 E-value=6.9e-15 Score=150.14 Aligned_cols=207 Identities=18% Similarity=0.243 Sum_probs=136.9
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc-
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK- 154 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~- 154 (371)
..|++++|.+..++.+.+.+ ........+|||+|++|||||++|++|+..+ +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----------~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----------EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHH----------HHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 46788999999999998888 3344445679999999999999999999876 459999999887532
Q ss_pred ----ccchHH-------HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCC
Q psy6716 155 ----WYGDSE-------KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPN 220 (371)
Q Consensus 155 ----~~g~~~-------~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~ 220 (371)
++|... ......+. ...+++||||||+.+ +...+..|+..++.... . +.....
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDM----------PLELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hhhhhcCcccccccccccchhhHHH---hcCCCeEEEechhhC----------CHHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 222110 11112233 334799999999999 78889999999875321 1 122334
Q ss_pred CCEEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHH----HHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 221 KSVLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSL----LTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 221 ~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~i----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.++++|++|+.. ..+...+..|+ ..+.+..|+..+|.+- +++++.++.... + ....-.+...+
T Consensus 510 ~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~----~-~~~~~~s~~al 583 (686)
T PRK15429 510 TDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRM----G-RNIDSIPAETL 583 (686)
T ss_pred ceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc----C-CCCCCcCHHHH
Confidence 688999999874 12344455566 4678889999888874 444444322100 0 00111233345
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAAFM 314 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~~~ 314 (371)
..|..+..--+-++|+++++.|...
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 6666665555778888888877653
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.3e-14 Score=141.99 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=130.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCe-------------
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF------------- 143 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~------------- 143 (371)
...+|++++|++.+++.|...+. . +..++.+||+||+|+|||++|+++|+.+.+..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~----------~-~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIA----------E-GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHH----------h-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34579999999999999988872 1 23345689999999999999999999875321
Q ss_pred ------------EEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHH
Q psy6716 144 ------------FNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ 207 (371)
Q Consensus 144 ------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~ 207 (371)
+.++.+. ......++.+...+... ...|++|||+|.| ....++.|+..
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L----------~~~a~naLLk~ 143 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML----------STAAFNALLKT 143 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC----------CHHHHHHHHHH
Confidence 1111110 01112233333333221 2469999999998 45567788888
Q ss_pred hhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 208 MDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 208 l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
|+.. +..+++|.+++..+.+.+.+.+|+ ..+.|+.++..+...++...+...++. .++.
T Consensus 144 LEep--------p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~------------i~~e 202 (585)
T PRK14950 144 LEEP--------PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGIN------------LEPG 202 (585)
T ss_pred HhcC--------CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCC------------CCHH
Confidence 7643 335667777777778888999999 568999999999999999888876653 3444
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 288 NIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 288 ~~~~la~~~~g~s~~di~~l~~~a 311 (371)
.+..++..+.| +.+++.+.++..
T Consensus 203 al~~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 203 ALEAIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 57788888876 777777766643
No 152
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.61 E-value=8.7e-15 Score=148.50 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=133.1
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~ 154 (371)
..+|++++|.+..++.+.+.+ ........+|||+|++||||+++|++||..+. .||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~----------~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFG----------RQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHH----------HHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 446889999999999888877 44444556799999999999999999999764 59999999987532
Q ss_pred -----ccchH----HHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc--C-CCCCCCC
Q psy6716 155 -----WYGDS----EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV--S-NEDPNKS 222 (371)
Q Consensus 155 -----~~g~~----~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~-~~~~~~~ 222 (371)
++|.. .......|.. ..+++||||||+.| +...|..|+..++..... + ....+.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYL----------SPELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhC----------CHHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 22211 0000012222 34799999999999 788899999998743321 1 1122347
Q ss_pred EEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcccHHH
Q psy6716 223 VLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEV 291 (371)
Q Consensus 223 v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
++||+||+.. ..+.+.+..|+ ..+.+..|+..+|.+ ++.+++..+... .. .... .++..+..
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~----~~-~~~~-~s~~a~~~ 530 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKR----FS-TRLK-IDDDALAR 530 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHH----hC-CCCC-cCHHHHHH
Confidence 8899999874 23344555566 567888899988875 344444432110 00 0111 23334556
Q ss_pred HHHHccCCCHHHHHHHHHHHHH
Q psy6716 292 LAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 292 la~~~~g~s~~di~~l~~~a~~ 313 (371)
|..+...-+.++|+++++.|..
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHH
Confidence 6665544466777777766553
No 153
>PRK09087 hypothetical protein; Validated
Probab=99.60 E-value=7.5e-14 Score=122.79 Aligned_cols=174 Identities=18% Similarity=0.219 Sum_probs=116.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST 194 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~ 194 (371)
.+.++|+||+|+|||||+++++...+..++ +...+... .+.... ..+|+|||++.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~------ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAA---EGPVLIEDIDAGGF------ 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhh---cCeEEEECCCCCCC------
Confidence 345999999999999999999987655533 33322111 111111 25899999997621
Q ss_pred hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCC
Q psy6716 195 DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVK 269 (371)
Q Consensus 195 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~ 269 (371)
.+..|+..++.... .+..+||+++..|.. ..+.+++|+. .++.+.+|+.++|..+++..+...+
T Consensus 102 -----~~~~lf~l~n~~~~------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 -----DETGLFHLINSVRQ------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred -----CHHHHHHHHHHHHh------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 12335555544432 234466666655532 3578999884 7889999999999999999998766
Q ss_pred CCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHH
Q psy6716 270 VDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAV 349 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 349 (371)
+. .++..++.|+++..| +.+.+..+++.....+... ..+||...+.+++
T Consensus 171 ~~------------l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------------~~~it~~~~~~~l 219 (226)
T PRK09087 171 LY------------VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------------KSRITRALAAEVL 219 (226)
T ss_pred CC------------CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHH
Confidence 53 456678899999886 6666666665544333332 1368888888888
Q ss_pred HhC
Q psy6716 350 RNC 352 (371)
Q Consensus 350 ~~~ 352 (371)
+.+
T Consensus 220 ~~~ 222 (226)
T PRK09087 220 NEM 222 (226)
T ss_pred Hhh
Confidence 765
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=3.8e-14 Score=131.06 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=111.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-------CeEE----
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-------NFFN---- 145 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------~~~~---- 145 (371)
+..+|++|+|++++|..|...+..| ...++||.|++|||||++||+++..+.. ||..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4668999999999999998877432 2257999999999999999999876532 2220
Q ss_pred ------------------------Eeccccc-----ccccch--HHHHHHHHH-----HHHHHhCCcEEEeccchhhccC
Q psy6716 146 ------------------------ITSSTLT-----SKWYGD--SEKLIRLLF-----LLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 146 ------------------------v~~~~l~-----~~~~g~--~~~~~~~~~-----~~a~~~~~~il~lDeid~l~~~ 189 (371)
+.+..++ ...+|. .+..+.... ........++|||||++.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL--- 156 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--- 156 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC---
Confidence 0000000 011111 011100000 0011223689999999999
Q ss_pred CCCChhhhhhhHHHHHHHhhcccc----cCC-CCCCCCEEEEeecCCCC-CccHHHHhcccceEEecCCC-HHHHHHHHH
Q psy6716 190 RSTSTDVTRRMKSELLCQMDGLAS----VSN-EDPNKSVLILAATNFPW-DLDEAFRRRLEKRIYVPIPD-QATRVSLLT 262 (371)
Q Consensus 190 ~~~~~~~~~~~~~~ll~~l~~~~~----~~~-~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~~~~p~-~~er~~il~ 262 (371)
+...+..|+..|+.... .+. ...+.++++|+|.|..+ .+++.+.+||...+.+..|+ .+.+.+|++
T Consensus 157 -------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 157 -------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred -------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHH
Confidence 77889999998864211 111 13456888888888665 69999999999999999887 599999998
Q ss_pred HHH
Q psy6716 263 IFL 265 (371)
Q Consensus 263 ~~~ 265 (371)
...
T Consensus 230 ~~~ 232 (350)
T CHL00081 230 QRT 232 (350)
T ss_pred hhh
Confidence 754
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.1e-13 Score=136.10 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=134.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
..+|++++|++.+++.|...+ . .+..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i----------~-~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAI----------A-TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------H-cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 357999999999999999988 2 22444679999999999999999999987531
Q ss_pred ----------eEEEecccccccccchHHHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 143 ----------FFNITSSTLTSKWYGDSEKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 143 ----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
++.+++.+- .....++.+...+...+ .-|++|||+|.| ....++.|+..|
T Consensus 82 ~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L----------s~~a~naLLK~L 145 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML----------SQAAFNAFLKTL 145 (614)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccC----------CHHHHHHHHHHH
Confidence 222222110 11233455555444332 349999999999 556688888888
Q ss_pred hcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 209 DGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 209 ~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
+.. +..+++|.+|+.+..+.+.+++|+ ..+.+..++.++....+...+.+.++. .++..
T Consensus 146 Eep--------p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~------------i~~~a 204 (614)
T PRK14971 146 EEP--------PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGIT------------AEPEA 204 (614)
T ss_pred hCC--------CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCC------------CCHHH
Confidence 653 345677777777789999999999 679999999999999999988887763 34445
Q ss_pred HHHHHHHccCCCHHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~a 311 (371)
+..++..+.| +.+++..+++..
T Consensus 205 l~~La~~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 205 LNVIAQKADG-GMRDALSIFDQV 226 (614)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHH
Confidence 7888888865 666666666543
No 156
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.59 E-value=5.4e-15 Score=145.05 Aligned_cols=254 Identities=20% Similarity=0.198 Sum_probs=156.0
Q ss_pred CchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHh
Q psy6716 19 PGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAI 98 (371)
Q Consensus 19 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 98 (371)
....+.++. .++.+++.||.....+...++.++......... .. ......+.+++|.+..++.+.+.+
T Consensus 87 ~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~----~~-------~~~~~~~~~lig~s~~~~~l~~~~ 154 (469)
T PRK10923 87 LDAAVSAYQ-QGAFDYLPKPFDIDEAVALVERAISHYQEQQQP----RN-------IQVNGPTTDIIGEAPAMQDVFRII 154 (469)
T ss_pred HHHHHHHHh-cCcceEEecCCcHHHHHHHHHHHHHHHHHHHhh----hh-------hhhccccccceecCHHHHHHHHHH
Confidence 444555665 667888989888777777776655432211100 00 011124567899888888887776
Q ss_pred hccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccccc-----chHHHH-------H
Q psy6716 99 VLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKWY-----GDSEKL-------I 163 (371)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~~-----g~~~~~-------~ 163 (371)
........+++|+|++||||+++|+++|..+. .+|+.++|+.+..... |..... .
T Consensus 155 ----------~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~ 224 (469)
T PRK10923 155 ----------GRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIR 224 (469)
T ss_pred ----------HHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCC
Confidence 33334456799999999999999999999864 5999999988743211 110000 0
Q ss_pred HHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc--CC-CCCCCCEEEEeecCCC-------C
Q psy6716 164 RLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV--SN-EDPNKSVLILAATNFP-------W 233 (371)
Q Consensus 164 ~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~-~~~~~~v~vI~ttn~~-------~ 233 (371)
...+. ...+++|||||++.| +...+..|+..++..... ++ .....+++||+||+.. .
T Consensus 225 ~g~~~---~a~~Gtl~l~~i~~l----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 225 QGRFE---QADGGTLFLDEIGDM----------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCee---ECCCCEEEEeccccC----------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 01122 223789999999999 778889999988753321 11 1224578999999864 2
Q ss_pred CccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 234 DLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 234 ~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
.+.+.+..|+ ..+.+..|+..+|.+ ++.+++..+.... +..... .+...+..|..+..--+-++|+++++
T Consensus 292 ~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~----~~~~~~-~~~~a~~~L~~~~wpgNv~eL~~~i~ 365 (469)
T PRK10923 292 KFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAAREL----GVEAKL-LHPETEAALTRLAWPGNVRQLENTCR 365 (469)
T ss_pred CchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHc----CCCCCC-cCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 4556777788 457778888877776 4455554321100 000001 22334555666555556677777776
Q ss_pred HHHH
Q psy6716 310 DAAF 313 (371)
Q Consensus 310 ~a~~ 313 (371)
.+..
T Consensus 366 ~~~~ 369 (469)
T PRK10923 366 WLTV 369 (469)
T ss_pred HHHH
Confidence 6653
No 157
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.58 E-value=1.6e-14 Score=141.35 Aligned_cols=259 Identities=19% Similarity=0.229 Sum_probs=156.1
Q ss_pred CCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHH
Q psy6716 18 LPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEA 97 (371)
Q Consensus 18 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~ 97 (371)
.....+.++. .++.+++.||.+...+...+..++...............+ .....+..++|.+..+..+.+.
T Consensus 87 ~~~~~~~a~~-~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~l-------~~~~~~~~ii~~S~~~~~~~~~ 158 (457)
T PRK11361 87 EVETAVEALR-CGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQAL-------STSWQWGHILTNSPAMMDICKD 158 (457)
T ss_pred CHHHHHHHHH-CCccEEEecccCHHHHHHHHhhhccccccchhhhhhhhhh-------hccccccceecccHHHhHHHHH
Confidence 3445556666 6778899998877777666665544332222111111111 1122345688888888777766
Q ss_pred hhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc-----chHHHH-------
Q psy6716 98 IVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY-----GDSEKL------- 162 (371)
Q Consensus 98 i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~-----g~~~~~------- 162 (371)
+ ........+++++|++||||+++|++++..+ +.+|+.++|..+..... |.....
T Consensus 159 ~----------~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 228 (457)
T PRK11361 159 T----------AKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228 (457)
T ss_pred H----------HHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCC
Confidence 6 3333445679999999999999999999875 45899999998753221 110000
Q ss_pred HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEEEeecCCC-------
Q psy6716 163 IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLILAATNFP------- 232 (371)
Q Consensus 163 ~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~vI~ttn~~------- 232 (371)
....+. ...+++||||||+.| +...+..|+..++.... . +....+.+++||++|+..
T Consensus 229 ~~g~~~---~a~~gtl~ld~i~~l----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~ 295 (457)
T PRK11361 229 RQGLFE---RANEGTLLLDEIGEM----------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKE 295 (457)
T ss_pred CCCceE---ECCCCEEEEechhhC----------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHc
Confidence 001122 223789999999999 77789999998875321 1 112234578999999864
Q ss_pred CCccHHHHhcccceEEecCCCHHHHHHHH----HHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 233 WDLDEAFRRRLEKRIYVPIPDQATRVSLL----TIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 233 ~~l~~~l~~rf~~~i~~~~p~~~er~~il----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
..+.+.+..|+ ..+.+..|+..+|.+-+ .+++.++... .+..... .+...+..|..+...-+-++|++++
T Consensus 296 g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~----~~~~~~~-~~~~a~~~L~~~~wpgNv~eL~~~~ 369 (457)
T PRK11361 296 GTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSSE----NQRDIID-IDPMAMSLLTAWSWPGNIRELSNVI 369 (457)
T ss_pred CCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHHH----cCCCCCC-cCHHHHHHHHcCCCCCcHHHHHHHH
Confidence 23455666677 45788889998887633 3444432210 0000011 2233355555555555667777777
Q ss_pred HHHHH
Q psy6716 309 RDAAF 313 (371)
Q Consensus 309 ~~a~~ 313 (371)
+.|..
T Consensus 370 ~~~~~ 374 (457)
T PRK11361 370 ERAVV 374 (457)
T ss_pred HHHHH
Confidence 76653
No 158
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.57 E-value=3.8e-13 Score=120.73 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=99.5
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC------------CCCccHHHHhc
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF------------PWDLDEAFRRR 242 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~~r 242 (371)
|+||||||++.| .-....-|.+.|+.-. .+ +||.+||+ |+.++..+++|
T Consensus 292 pGVLFIDEvHmL----------DIE~FsFlnrAlEse~--------aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDR 352 (450)
T COG1224 292 PGVLFIDEVHML----------DIECFSFLNRALESEL--------AP-IIILATNRGMTKIRGTDIESPHGIPLDLLDR 352 (450)
T ss_pred cceEEEechhhh----------hHHHHHHHHHHhhccc--------Cc-EEEEEcCCceeeecccCCcCCCCCCHhhhhh
Confidence 899999999988 4555555666664322 23 55667774 46788999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 243 LEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 243 f~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
+ .+|...+.+.++.++|++..+....+. .++..++.|+....--|-+---+|+.-|...+.++.
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~------------l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--- 416 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIE------------LSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--- 416 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccc------------cCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---
Confidence 9 888889999999999999999877763 445567888877665555555555555555555543
Q ss_pred CCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q psy6716 323 NPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIK 369 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~ 369 (371)
...+..+|++.|..-+... ....+-.++|..
T Consensus 417 --------------~~~V~~~dVe~a~~lF~D~--krSv~~v~~~~~ 447 (450)
T COG1224 417 --------------SKRVEVEDVERAKELFLDV--KRSVEYVEKYEG 447 (450)
T ss_pred --------------CCeeehhHHHHHHHHHhhH--HHHHHHHHHHHh
Confidence 2378899999998887442 233344444444
No 159
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.57 E-value=1.5e-13 Score=127.25 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=108.0
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-------CCCeE--------
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-------KSNFF-------- 144 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-------~~~~~-------- 144 (371)
+|..|+|++.++..|.-.+..| ...+++|.|++|+|||+++++++... +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5788999999999887655322 13579999999999999999999766 22221
Q ss_pred -EEec-------------------ccccc-----cccchHH--HHH--------HHHHHHHHHhCCcEEEeccchhhccC
Q psy6716 145 -NITS-------------------STLTS-----KWYGDSE--KLI--------RLLFLLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 145 -~v~~-------------------~~l~~-----~~~g~~~--~~~--------~~~~~~a~~~~~~il~lDeid~l~~~ 189 (371)
..+| .+++. .+.|... ..+ ...+. +..+++|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC---
Confidence 0001 11111 2222210 100 01111 223689999999999
Q ss_pred CCCChhhhhhhHHHHHHHhhccc----ccC-CCCCCCCEEEEeecCCCC-CccHHHHhcccceEEecCCCH-HHHHHHHH
Q psy6716 190 RSTSTDVTRRMKSELLCQMDGLA----SVS-NEDPNKSVLILAATNFPW-DLDEAFRRRLEKRIYVPIPDQ-ATRVSLLT 262 (371)
Q Consensus 190 ~~~~~~~~~~~~~~ll~~l~~~~----~~~-~~~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~~~~p~~-~er~~il~ 262 (371)
+...+..|+..|+... ..+ ....+.++++|+|+|..+ .+++++++||...+.++.|+. ++|.+|++
T Consensus 144 -------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 144 -------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred -------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHH
Confidence 7788999999886432 111 112345788899988654 689999999999999988865 88999998
Q ss_pred HHH
Q psy6716 263 IFL 265 (371)
Q Consensus 263 ~~~ 265 (371)
...
T Consensus 217 ~~~ 219 (337)
T TIGR02030 217 RRT 219 (337)
T ss_pred hhh
Confidence 743
No 160
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.57 E-value=2.7e-13 Score=115.47 Aligned_cols=197 Identities=22% Similarity=0.231 Sum_probs=137.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTS 153 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~ 153 (371)
+.+.+.+|+|.+.+++.|.+... .|. .+.|.++|||+|..|||||++++|+.++. +..+++|+..++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~-------~F~-~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTE-------QFA-EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHH-------HHH-cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 34677889999999999987762 122 24677899999999999999999998876 45688888776642
Q ss_pred cccchHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 154 KWYGDSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
+..++...+..+ .-|||+|++-- +........|...|++... ..+.+|+|.+|+|+.
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd~~yK~LKs~LeG~ve----~rP~NVl~YATSNRR 184 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSF---------EEGDDAYKALKSALEGGVE----GRPANVLFYATSNRR 184 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCC---------CCCchHHHHHHHHhcCCcc----cCCCeEEEEEecCCc
Confidence 333444444332 57999999831 1122334556666765443 247899999999988
Q ss_pred CCccH----------------------HHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 233 WDLDE----------------------AFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 233 ~~l~~----------------------~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
+.++. ++-+||+..+.|++++.++...|+.+++..++++...+. -....-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~--------l~~eAl 256 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEE--------LHAEAL 256 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHH--------HHHHHH
Confidence 65542 223399999999999999999999999999988522100 011122
Q ss_pred HHHHHccCCCHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a 311 (371)
+.|..-.|-||+-..++++..
T Consensus 257 ~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 257 QWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHhcCCCccHhHHHHHHHH
Confidence 455556677888777777654
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.6e-14 Score=143.72 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=151.8
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccc-----
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSK----- 154 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~----- 154 (371)
.++|++.+...+.+.+... ...+....+|..++||.||+|+|||-+|+++|..+. ..++++|+|+++.+
T Consensus 492 rViGQd~AV~avs~aIrra---RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred ceeChHHHHHHHHHHHHHH---hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH
Confidence 4799999999999988321 001111225556789999999999999999999986 68999999998642
Q ss_pred -------ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEE
Q psy6716 155 -------WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVL 224 (371)
Q Consensus 155 -------~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~ 224 (371)
|+|..+ -..+.+..++.+.+||++|||++. ...+++-||+.||...-+ +....-++++
T Consensus 569 LIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNti 636 (786)
T COG0542 569 LIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTI 636 (786)
T ss_pred HhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCCCCEEecceeE
Confidence 444333 123344455566789999999998 789999999999965433 2234567899
Q ss_pred EEeecCCC----------------------------CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhh
Q psy6716 225 ILAATNFP----------------------------WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNI 276 (371)
Q Consensus 225 vI~ttn~~----------------------------~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~ 276 (371)
||+|||-- ..+.|+++.|++.+|.|.+.+.+...+|+...+....-... .
T Consensus 637 IImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~--~ 714 (786)
T COG0542 637 IIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA--E 714 (786)
T ss_pred EEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 99999854 11347778899999999999999999999888875432110 0
Q ss_pred hhhcccCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHh
Q psy6716 277 EVLNVKVDKDVNIEVLAERLE--GYSSADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~~~~~~~ 320 (371)
....+. .++...+.++...- .|-++-|+.+++.-....+.+.+
T Consensus 715 ~~i~l~-~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 715 RGITLE-LSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred CCceEE-ECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 011111 23334556666532 34556777777766666665553
No 162
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.56 E-value=5.4e-14 Score=141.55 Aligned_cols=164 Identities=24% Similarity=0.289 Sum_probs=112.6
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc--------------------
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-------------------- 139 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-------------------- 139 (371)
.|.+|+|++.++..+.-....| ...+|||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5788999999998887665321 12569999999999999999999887
Q ss_pred ---------------CCCeEEEecccccccccchH--HHHHH---HHH--HHHHHhCCcEEEeccchhhccCCCCChhhh
Q psy6716 140 ---------------KSNFFNITSSTLTSKWYGDS--EKLIR---LLF--LLAKELAPSIVFFDEIDSMCSHRSTSTDVT 197 (371)
Q Consensus 140 ---------------~~~~~~v~~~~l~~~~~g~~--~~~~~---~~~--~~a~~~~~~il~lDeid~l~~~~~~~~~~~ 197 (371)
..||+.+.++.....++|.. ...+. ..+ ........++||||||+.+ .
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l----------~ 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL----------D 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------C
Confidence 24666665554333334431 11110 000 0011123579999999999 7
Q ss_pred hhhHHHHHHHhhccc----ccC-CCCCCCCEEEEeecCCC-CCccHHHHhcccceEEecCC-CHHHHHHHHHHHH
Q psy6716 198 RRMKSELLCQMDGLA----SVS-NEDPNKSVLILAATNFP-WDLDEAFRRRLEKRIYVPIP-DQATRVSLLTIFL 265 (371)
Q Consensus 198 ~~~~~~ll~~l~~~~----~~~-~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~~~~p-~~~er~~il~~~~ 265 (371)
...+..|+..|+... ..+ ....+.++++|+|+|.. ..+.+++++||...+.++.| +.+++.+++....
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 788999999987431 111 11335678999999964 36889999999988888766 4688888887654
No 163
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=129.26 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=119.4
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTS 153 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~ 153 (371)
+...|+.|++.+..++.+.+.. ++.+-...++||.|++||||..+|++.+..+. .||+.++|..++.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA----------~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQA----------QKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHH----------HHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4557888999999888887665 44443445699999999999999999998774 4899999999875
Q ss_pred c-----ccchHH--HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc--CC-CCCCCCE
Q psy6716 154 K-----WYGDSE--KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV--SN-EDPNKSV 223 (371)
Q Consensus 154 ~-----~~g~~~--~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~-~~~~~~v 223 (371)
. .+|... .....+|+.|. ++.+|||||..| +.++|.+|++.++..... +. .....+|
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEm----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEM----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhc----------CHHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 4 223222 33445677776 899999999998 789999999998754432 22 2345689
Q ss_pred EEEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHHH
Q psy6716 224 LILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSL 260 (371)
Q Consensus 224 ~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~i 260 (371)
+||++|..+ ..+-..+.-|+ .++.+..|+..+|..-
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~d 378 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQD 378 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCccc
Confidence 999999875 22334455577 7788999999888763
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=1.3e-13 Score=143.30 Aligned_cols=222 Identities=20% Similarity=0.238 Sum_probs=149.3
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc---
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW--- 155 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~--- 155 (371)
..++|++.+++.+...+..... .......|...+||+||+|||||++|+++|..+ +.+++.++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc---cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 3489999999999988832100 000112345579999999999999999999986 4589999998764321
Q ss_pred ---------cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC---CCCCCCCE
Q psy6716 156 ---------YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS---NEDPNKSV 223 (371)
Q Consensus 156 ---------~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~~~v 223 (371)
+|..+ ...+....+..+.+||+||||+.+ +..+++.|+..|+.....+ ....-.++
T Consensus 642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC----------CHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 11111 112333344555679999999998 7788999999997543221 11234578
Q ss_pred EEEeecCCCC-------------------------CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhh
Q psy6716 224 LILAATNFPW-------------------------DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEV 278 (371)
Q Consensus 224 ~vI~ttn~~~-------------------------~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~ 278 (371)
+||+|||... .+.|.|+.|++.++.+.+++.++..+|+...+....-... ..+
T Consensus 710 iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~-~~~- 787 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA-ERK- 787 (852)
T ss_pred EEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence 8999999732 1346677799999999999999999999888764321000 000
Q ss_pred hcccCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhh
Q psy6716 279 LNVKVDKDVNIEVLAERLE--GYSSADITIVCRDAAFMNLRRYLN 321 (371)
Q Consensus 279 ~~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~~~~~~~~ 321 (371)
.... .++..++.|++... .+..+.|+.+++......+.+.+-
T Consensus 788 ~~l~-i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 788 ITLE-LSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred Ceec-CCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 0112 34445777887633 466789999999888888877643
No 165
>PHA02244 ATPase-like protein
Probab=99.54 E-value=3.8e-13 Score=123.74 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=87.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc---hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG---DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS 191 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g---~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~ 191 (371)
..+|||+||||||||++|+++|..++.+|+.++...-.....| ........-+..+ ...+++|+|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-~~~GgvLiLDEId~a----- 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-FKKGGLFFIDEIDAS----- 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-hhcCCEEEEeCcCcC-----
Confidence 3569999999999999999999999999999874310111111 1001111112222 235789999999998
Q ss_pred CChhhhhhhHHHHHHHhhccc-cc-CC-CCCCCCEEEEeecCCC-----------CCccHHHHhcccceEEecCCCHHHH
Q psy6716 192 TSTDVTRRMKSELLCQMDGLA-SV-SN-EDPNKSVLILAATNFP-----------WDLDEAFRRRLEKRIYVPIPDQATR 257 (371)
Q Consensus 192 ~~~~~~~~~~~~ll~~l~~~~-~~-~~-~~~~~~v~vI~ttn~~-----------~~l~~~l~~rf~~~i~~~~p~~~er 257 (371)
....+..|...++... .. +. .....++.+|+|+|.+ ..+++++++|| ..+.+..|+..|.
T Consensus 193 -----~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 193 -----IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIEH 266 (383)
T ss_pred -----CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHHH
Confidence 5566677777775321 11 11 1234688999999974 46789999999 6799999885333
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.54 E-value=1.9e-13 Score=111.78 Aligned_cols=141 Identities=40% Similarity=0.592 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHHHH
Q psy6716 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSEKL 162 (371)
Q Consensus 86 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~ 162 (371)
|.+...+.+...+.. ....+++|+||||+|||++++.++..+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666666666521 234679999999999999999999998 88899998877654332221111
Q ss_pred ---HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC--CccH
Q psy6716 163 ---IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW--DLDE 237 (371)
Q Consensus 163 ---~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~--~l~~ 237 (371)
............+.+|+|||++.+ .......++..+....... ....++.+|++++... .+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~----------~~~~~~~~~~~i~~~~~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSL----------SRGAQNALLRVLETLNDLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhh----------hHHHHHHHHHHHHhcCcee--ccCCCeEEEEecCccccCCcCh
Confidence 112223334446899999999987 2334455555555443210 1135788889998876 6888
Q ss_pred HHHhcccceEEec
Q psy6716 238 AFRRRLEKRIYVP 250 (371)
Q Consensus 238 ~l~~rf~~~i~~~ 250 (371)
.+.+||+..+.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 8999998777665
No 167
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=2.1e-13 Score=140.97 Aligned_cols=220 Identities=21% Similarity=0.229 Sum_probs=144.5
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc-----
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK----- 154 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~----- 154 (371)
.++|++.+++.+.+.+...... .....+|...+||+||||+|||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcc
Confidence 4789999999999888432100 01112333358999999999999999999988 347889998876421
Q ss_pred -------ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEE
Q psy6716 155 -------WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVL 224 (371)
Q Consensus 155 -------~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~ 224 (371)
|+|..+. ..+....+..+.+||+||||+.+ ...+++.|++.++...-. +....-.+++
T Consensus 644 l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~i 711 (852)
T TIGR03345 644 LKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA----------HPDVLELFYQVFDKGVMEDGEGREIDFKNTV 711 (852)
T ss_pred ccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc----------CHHHHHHHHHHhhcceeecCCCcEEeccccE
Confidence 3332211 11234445567899999999988 667888899888854322 1122345789
Q ss_pred EEeecCCCC-----------------------------CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchh
Q psy6716 225 ILAATNFPW-----------------------------DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVN 275 (371)
Q Consensus 225 vI~ttn~~~-----------------------------~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~ 275 (371)
||+|||... .+.|++++|++ ++.|.+++.++...|+...+..........
T Consensus 712 iI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~ 790 (852)
T TIGR03345 712 ILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKEN 790 (852)
T ss_pred EEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998531 14577788996 889999999999999988876532100000
Q ss_pred hhhhcccCCCcccHHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHh
Q psy6716 276 IEVLNVKVDKDVNIEVLAERLEG--YSSADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~la~~~~g--~s~~di~~l~~~a~~~~~~~~~ 320 (371)
. ...+. .++...+.|+....+ +-.+.+..+++.-....+.+.+
T Consensus 791 ~-gi~l~-i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 791 H-GAELV-YSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred c-CceEE-ECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 0 00111 334457778887543 4578888888876666666543
No 168
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=5.4e-13 Score=123.76 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=108.7
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC--------CeEEEecccc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS--------NFFNITSSTL 151 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~--------~~~~v~~~~l 151 (371)
+|++++|++.+++.+...+ . .+..++.+||+||+|+|||++|+++|+.+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~----------~-~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSI----------I-KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHH----------H-cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 5889999999999999887 2 2344467899999999999999999997633 122332210
Q ss_pred cccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
+... ....++.+...+... ..-|++||++|.+ .....+.|+..|+. ++.++++|.
T Consensus 70 -~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m----------~~~a~naLLK~LEe--------pp~~t~~il 128 (313)
T PRK05564 70 -KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM----------TEQAQNAFLKTIEE--------PPKGVFIIL 128 (313)
T ss_pred -CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc----------CHHHHHHHHHHhcC--------CCCCeEEEE
Confidence 1111 112244444433222 2459999999999 66678889998864 345667777
Q ss_pred ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHH
Q psy6716 228 ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 228 ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
+|+.++.+.+.+++|+ ..+.+++|+.++....+...+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 7788899999999999 689999999998877776544
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=2.1e-12 Score=120.55 Aligned_cols=190 Identities=18% Similarity=0.164 Sum_probs=125.8
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-------CeEE-Eec-
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-------NFFN-ITS- 148 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------~~~~-v~~- 148 (371)
...+++++|++.+...+...+ . .+..++.+||+||+|+|||++|+.+|+.+.+ +... ..|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~----------~-~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAY----------R-EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHH----------H-cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 346888999999999999988 2 2344567999999999999999999998754 1110 011
Q ss_pred --c---cccc----cc--c----ch---------HHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhh
Q psy6716 149 --S---TLTS----KW--Y----GD---------SEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRM 200 (371)
Q Consensus 149 --~---~l~~----~~--~----g~---------~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~ 200 (371)
. .+.. .+ + +. ....++.+...... ...-|++|||+|.| ....
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------~~~a 157 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------NRNA 157 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc----------CHHH
Confidence 0 0000 00 0 00 01223333322222 12459999999999 6667
Q ss_pred HHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhc
Q psy6716 201 KSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN 280 (371)
Q Consensus 201 ~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~ 280 (371)
.+.|+..++.. +.++++|..|+.++.+.+.+++|+ ..+.+++|+.++...++........+
T Consensus 158 anaLLk~LEEp--------p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~---------- 218 (351)
T PRK09112 158 ANAILKTLEEP--------PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGS---------- 218 (351)
T ss_pred HHHHHHHHhcC--------CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCC----------
Confidence 78899888653 335566667788888999999999 68999999999999998874322111
Q ss_pred ccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 281 VKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 281 ~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
++..+..++..+.| +++....+.+...
T Consensus 219 ----~~~~~~~i~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 219 ----DGEITEALLQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred ----CHHHHHHHHHHcCC-CHHHHHHHHhcCc
Confidence 12336677777776 6666666665443
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=7.5e-13 Score=137.25 Aligned_cols=221 Identities=19% Similarity=0.249 Sum_probs=142.1
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc----
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK---- 154 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~---- 154 (371)
..++|++.+++.+...+..... .......|...+||+||+|||||++|+++|..+ +.+++.++|+.+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHh---cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHH
Confidence 3578999999999988832100 000111333468999999999999999999876 457899999876432
Q ss_pred -ccchHH-----HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC---CCCCCCCEEE
Q psy6716 155 -WYGDSE-----KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS---NEDPNKSVLI 225 (371)
Q Consensus 155 -~~g~~~-----~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~~~v~v 225 (371)
++|... .....+....+..+.+||+|||++.+ ...+++.|+..++...... ......+.+|
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ii 714 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVV 714 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC----------CHHHHHHHHHHHhhCceecCCceEEeecccEE
Confidence 111100 00111222333444589999999988 6778889999887543221 1123446678
Q ss_pred EeecCCC-------------------------CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhc
Q psy6716 226 LAATNFP-------------------------WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN 280 (371)
Q Consensus 226 I~ttn~~-------------------------~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~ 280 (371)
|+|||.. ..+.|+++.|++.++.+.+++.+....|++.++........ ..+ ..
T Consensus 715 I~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~-~~g-i~ 792 (857)
T PRK10865 715 IMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE-ERG-YE 792 (857)
T ss_pred EEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH-hCC-Cc
Confidence 9999973 12457888899999999999999999999988875321000 000 01
Q ss_pred ccCCCcccHHHHHHHccCCC----HHHHHHHHHHHHHHHHHHHh
Q psy6716 281 VKVDKDVNIEVLAERLEGYS----SADITIVCRDAAFMNLRRYL 320 (371)
Q Consensus 281 ~~~~~~~~~~~la~~~~g~s----~~di~~l~~~a~~~~~~~~~ 320 (371)
+. .++..++.|+.. ||+ .+.|+.+++.-....+.+.+
T Consensus 793 l~-is~~al~~L~~~--gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 793 IH-ISDEALKLLSEN--GYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred Cc-CCHHHHHHHHHc--CCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 11 334446666654 444 57888888877776666654
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=1.7e-12 Score=121.79 Aligned_cols=185 Identities=21% Similarity=0.165 Sum_probs=123.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCe----E---------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF----F--------- 144 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~----~--------- 144 (371)
...+++|+|++.+++.|...+ .. +..++.+||+||+|+||+++|.++|+.+-+.- -
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~----------~~-~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAY----------RS-GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CCchhhccChHHHHHHHHHHH----------Hc-CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 346889999999999999888 22 34457799999999999999999998763210 0
Q ss_pred EE--ecc-----------ccc--c-c--ccch------HHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhh
Q psy6716 145 NI--TSS-----------TLT--S-K--WYGD------SEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDV 196 (371)
Q Consensus 145 ~v--~~~-----------~l~--~-~--~~g~------~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~ 196 (371)
.+ .|. ++. . . ..+. .-..++.+...+. ...+.|++|||+|.+
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m---------- 153 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM---------- 153 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc----------
Confidence 00 000 000 0 0 0000 0122333333222 224679999999999
Q ss_pred hhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhh
Q psy6716 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNI 276 (371)
Q Consensus 197 ~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~ 276 (371)
....++.|+..++.. +.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++...++......
T Consensus 154 ~~~aanaLLK~LEep--------p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~--------- 215 (365)
T PRK07471 154 NANAANALLKVLEEP--------PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD--------- 215 (365)
T ss_pred CHHHHHHHHHHHhcC--------CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---------
Confidence 667788899888643 346677888888989999999999 77999999999998888765321
Q ss_pred hhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 277 EVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
..+..+..++..+.| ++.....+.+
T Consensus 216 -------~~~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 216 -------LPDDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred -------CCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 122223566777766 6665555554
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=2.1e-13 Score=124.11 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=100.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc--ccchHHH----------HHHHHHHHHHHhCCcEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK--WYGDSEK----------LIRLLFLLAKELAPSIVFFDE 182 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~--~~g~~~~----------~~~~~~~~a~~~~~~il~lDe 182 (371)
.++|||.||||||||++|+.+|..++.+++.|++...... ++|...- .....+-.|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4679999999999999999999999999999988765433 3443110 0111222332 2468899999
Q ss_pred chhhccCCCCChhhhhhhHHHHHHHhhcc-----cccCCC-CCCCCEEEEeecCCCC------------CccHHHHhccc
Q psy6716 183 IDSMCSHRSTSTDVTRRMKSELLCQMDGL-----ASVSNE-DPNKSVLILAATNFPW------------DLDEAFRRRLE 244 (371)
Q Consensus 183 id~l~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~-~~~~~v~vI~ttn~~~------------~l~~~l~~rf~ 244 (371)
+|.. ..+.+..|...|+.- ...... .....++||||+|... .++.++++||.
T Consensus 143 in~a----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAG----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhcc----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 9988 556677777777631 111111 2445799999999853 46899999997
Q ss_pred ceEEecCCCHHHHHHHHHHHHh
Q psy6716 245 KRIYVPIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 245 ~~i~~~~p~~~er~~il~~~~~ 266 (371)
..+.+..|+.++-.+|+.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhcc
Confidence 7778999999999999876643
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=5.3e-13 Score=138.44 Aligned_cols=222 Identities=22% Similarity=0.213 Sum_probs=146.1
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc----
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK---- 154 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~---- 154 (371)
..++|++.+++.+...+..... ......+|...+||+||+|+|||++|+++|+.+ ..+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARV---GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhh---cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 3478999999999888732110 001122344568999999999999999999987 357899998876432
Q ss_pred --------ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCE
Q psy6716 155 --------WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSV 223 (371)
Q Consensus 155 --------~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v 223 (371)
|+|..+ ...+....+..+.+||+|||+|.+ ...+++.|+..|+..... +......++
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC----------CHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 222111 112344455555689999999998 678889999999854321 112234688
Q ss_pred EEEeecCCCCC-------------------------------------ccHHHHhcccceEEecCCCHHHHHHHHHHHHh
Q psy6716 224 LILAATNFPWD-------------------------------------LDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 224 ~vI~ttn~~~~-------------------------------------l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~ 266 (371)
+||+|||.... +.|+++.|++.++.|.+.+.++...|+...+.
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999885311 23567789999999999999999999988887
Q ss_pred cCCCCcchhhhhhcccCCCcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy6716 267 NVKVDKDVNIEVLNVKVDKDVNIEVLAER--LEGYSSADITIVCRDAAFMNLRRYLN 321 (371)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~g~s~~di~~l~~~a~~~~~~~~~~ 321 (371)
...-.. ......+. .++...+.|+.. ...+-.+.|+.+++.-....+.+.+-
T Consensus 734 ~l~~rl--~~~~i~l~-~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 734 NLFKRL--NEQGIQLE-VTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHHHH--HHCCcEEE-ECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 532110 00001122 233346677775 22344678888888777666666543
No 174
>PRK15115 response regulator GlrR; Provisional
Probab=99.51 E-value=2.8e-13 Score=132.07 Aligned_cols=244 Identities=18% Similarity=0.179 Sum_probs=146.4
Q ss_pred CchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHh
Q psy6716 19 PGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAI 98 (371)
Q Consensus 19 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 98 (371)
....++++. .++.+++.||.....+...+..++....... .......++|.+..+..+.+.+
T Consensus 89 ~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~l~~~~~~~~~~~-----------------~~~~~~~lig~s~~~~~~~~~~ 150 (444)
T PRK15115 89 IPDAVAATQ-QGVFSFLTKPVDRDALYKAIDDALEQSAPAT-----------------DERWREAIVTRSPLMLRLLEQA 150 (444)
T ss_pred HHHHHHHHh-cChhhhccCCCCHHHHHHHHHHHHHhhhccc-----------------ccchhhcccccCHHHHHHHHHH
Confidence 444556665 6678889898887777776666554321100 0001124667776666665555
Q ss_pred hccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccccccchHHHHHHHHHH-------
Q psy6716 99 VLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKWYGDSEKLIRLLFL------- 168 (371)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~~g~~~~~~~~~~~------- 168 (371)
.........++|+|++||||+++|++++.... .+|+.++|..+....... .+|.
T Consensus 151 ----------~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~------~lfg~~~~~~~ 214 (444)
T PRK15115 151 ----------RMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES------ELFGHARGAFT 214 (444)
T ss_pred ----------HhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH------HhcCCCcCCCC
Confidence 22223345699999999999999999999864 699999999875332111 1111
Q ss_pred --------HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEEEeecCCC-----
Q psy6716 169 --------LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLILAATNFP----- 232 (371)
Q Consensus 169 --------~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~vI~ttn~~----- 232 (371)
......+++|||||||.| +...|..|+..++.... . +......++++|+||+..
T Consensus 215 ~~~~~~~g~~~~a~~gtl~l~~i~~l----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~ 284 (444)
T PRK15115 215 GAVSNREGLFQAAEGGTLFLDEIGDM----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAM 284 (444)
T ss_pred CCccCCCCcEEECCCCEEEEEccccC----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHH
Confidence 111223789999999999 77888999998874321 1 111223478999999864
Q ss_pred --CCccHHHHhcccceEEecCCCHHHHHHHH----HHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 233 --WDLDEAFRRRLEKRIYVPIPDQATRVSLL----TIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 233 --~~l~~~l~~rf~~~i~~~~p~~~er~~il----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
..+.+.+..|+ ..+.+..|+..+|.+-+ .+++..+.... .. .....++..+..|..+...-+.++|++
T Consensus 285 ~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~----~~-~~~~~~~~a~~~L~~~~WpgNvreL~~ 358 (444)
T PRK15115 285 ARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAERH----KP-FVRAFSTDAMKRLMTASWPGNVRQLVN 358 (444)
T ss_pred HcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHHHh----CC-CCCCcCHHHHHHHHhCCCCChHHHHHH
Confidence 12334444455 45788889999997643 45544321100 00 000023334555555554446666666
Q ss_pred HHHHHH
Q psy6716 307 VCRDAA 312 (371)
Q Consensus 307 l~~~a~ 312 (371)
+++.|.
T Consensus 359 ~i~~~~ 364 (444)
T PRK15115 359 VIEQCV 364 (444)
T ss_pred HHHHHH
Confidence 666654
No 175
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.50 E-value=5.7e-14 Score=137.63 Aligned_cols=258 Identities=18% Similarity=0.170 Sum_probs=149.9
Q ss_pred CchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHh
Q psy6716 19 PGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAI 98 (371)
Q Consensus 19 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 98 (371)
....++++. .++.+++.||.....+...++.++....... ..... .........++|.+.....+...+
T Consensus 82 ~~~~~~a~~-~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~-------~~~~~---~~~~~~~~~lig~s~~~~~v~~~i 150 (463)
T TIGR01818 82 LDTAVAAYQ-RGAFEYLPKPFDLDEAVTLVERALAHAQEQV-------ALPAD---AGEAEDSAELIGEAPAMQEVFRAI 150 (463)
T ss_pred HHHHHHHHH-cCcceeecCCCCHHHHHHHHHHHHHHHHHHH-------hhhhh---hhccccccceeecCHHHHHHHHHH
Confidence 344555555 5678889898887777777766554321100 00000 000112345888888888887766
Q ss_pred hccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc-----chHHH----HHHHH
Q psy6716 99 VLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY-----GDSEK----LIRLL 166 (371)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~-----g~~~~----~~~~~ 166 (371)
........++++.|++||||+++|++++... ..+|+.++|..+...+. |.... .....
T Consensus 151 ----------~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~ 220 (463)
T TIGR01818 151 ----------GRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRR 220 (463)
T ss_pred ----------HHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCC
Confidence 2233344679999999999999999999875 45899999988754321 11000 00000
Q ss_pred HHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEEeecCCC-------CCcc
Q psy6716 167 FLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLILAATNFP-------WDLD 236 (371)
Q Consensus 167 ~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI~ttn~~-------~~l~ 236 (371)
........+++||||||+.| +...+..|+..++..... +......+++||++|+.. ..+.
T Consensus 221 ~g~~~~a~~gtl~l~ei~~l----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 221 QGRFEQADGGTLFLDEIGDM----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCcEEECCCCeEEEEchhhC----------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 00111224789999999999 677888999888743211 111233478899998864 2345
Q ss_pred HHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 237 EAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 237 ~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+.+..|+ ..+.+..|+..+|.+ ++.+++....... +..... .++..+..|.....--+-++|+++++.|.
T Consensus 291 ~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~----~~~~~~-~~~~a~~~L~~~~wpgNvreL~~~~~~~~ 364 (463)
T TIGR01818 291 EDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAAREL----DVEPKL-LDPEALERLKQLRWPGNVRQLENLCRWLT 364 (463)
T ss_pred HHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHh----CCCCCC-cCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 5666677 446666677666654 4444444332100 000011 22334555555544345577777777665
Q ss_pred H
Q psy6716 313 F 313 (371)
Q Consensus 313 ~ 313 (371)
.
T Consensus 365 ~ 365 (463)
T TIGR01818 365 V 365 (463)
T ss_pred H
Confidence 4
No 176
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.2e-12 Score=119.79 Aligned_cols=229 Identities=19% Similarity=0.206 Sum_probs=149.9
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-----eEEEeccccccccc
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-----FFNITSSTLTSKWY 156 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-----~~~v~~~~l~~~~~ 156 (371)
+.+.+.++.+.++...+.-.+ . +..|.+++++|+||||||.+++.+++++..+ +++|||....+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~------~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPAL------R--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHh------c--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 448888999998887762211 1 2334569999999999999999999987543 89999987654321
Q ss_pred ---------------ch-HHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCC
Q psy6716 157 ---------------GD-SEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDP 219 (371)
Q Consensus 157 ---------------g~-~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 219 (371)
|. .......+++.... ....||+|||+|.|..+.. ..+-.|++.-...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~-------- 153 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN-------- 153 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc--------
Confidence 11 12223333333333 2356899999999976532 3344444433222
Q ss_pred CCCEEEEeecCCCC---CccHHHHhcc-cceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH
Q psy6716 220 NKSVLILAATNFPW---DLDEAFRRRL-EKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER 295 (371)
Q Consensus 220 ~~~v~vI~ttn~~~---~l~~~l~~rf-~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 295 (371)
..++.+|+.+|..+ .+++.+.+++ ...|.||+.+.+|..+|+.......-.+ ...++..+..+|..
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~----------~~~~~~vl~lia~~ 223 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSA----------GVIDDDVLKLIAAL 223 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccC----------CCcCccHHHHHHHH
Confidence 34788999999873 5788888876 3568999999999999999888743211 11233334444433
Q ss_pred ---ccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHH
Q psy6716 296 ---LEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDA 361 (371)
Q Consensus 296 ---~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 361 (371)
..| +.+-.-.+|+.|...|-++. ...++.++..+|...+...+..+.+
T Consensus 224 ~a~~~G-DAR~aidilr~A~eiAe~~~-----------------~~~v~~~~v~~a~~~~~~~~~~~~~ 274 (366)
T COG1474 224 VAAESG-DARKAIDILRRAGEIAEREG-----------------SRKVSEDHVREAQEEIERDVLEEVL 274 (366)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHhhC-----------------CCCcCHHHHHHHHHHhhHHHHHHHH
Confidence 333 45556677888888777765 3367888888886666555544443
No 177
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.49 E-value=9.1e-13 Score=128.12 Aligned_cols=150 Identities=25% Similarity=0.271 Sum_probs=100.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC------------------
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK------------------ 140 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~------------------ 140 (371)
..|+++.|++.+++.+.-.+ ....+++|.||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 36889999999988776554 3446799999999999999999986431
Q ss_pred ----------CCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhc
Q psy6716 141 ----------SNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDG 210 (371)
Q Consensus 141 ----------~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 210 (371)
.||...+++......+|.........+..|. +++|||||++.+ ....+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~----------~~~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF----------KRSVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC----------CHHHHHHHHHHHHc
Confidence 2333333332222222222111122333333 789999999998 67788888888864
Q ss_pred cc----cc-CCCCCCCCEEEEeecCCC------C-----------------CccHHHHhcccceEEecCCCHH
Q psy6716 211 LA----SV-SNEDPNKSVLILAATNFP------W-----------------DLDEAFRRRLEKRIYVPIPDQA 255 (371)
Q Consensus 211 ~~----~~-~~~~~~~~v~vI~ttn~~------~-----------------~l~~~l~~rf~~~i~~~~p~~~ 255 (371)
.. .. .....+.++.+|+++|.- + .+...+++||+..+.++.++..
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 32 11 112345689999999863 1 4788999999999999876554
No 178
>KOG2035|consensus
Probab=99.49 E-value=5.9e-13 Score=115.62 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=125.3
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---eEEEecccc-----
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---FFNITSSTL----- 151 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---~~~v~~~~l----- 151 (371)
+++.+.+..+....+..... .....++++|||+|+||-+.+.++-+++..+ =..+....+
T Consensus 11 sl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~ 78 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSK 78 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCC
Confidence 45556676777666665541 1222579999999999999999998876331 111111111
Q ss_pred --------ccc--------ccchH-HHHHHHHHHHHHHhC---------CcEEEeccchhhccCCCCChhhhhhhHHHHH
Q psy6716 152 --------TSK--------WYGDS-EKLIRLLFLLAKELA---------PSIVFFDEIDSMCSHRSTSTDVTRRMKSELL 205 (371)
Q Consensus 152 --------~~~--------~~g~~-~~~~~~~~~~a~~~~---------~~il~lDeid~l~~~~~~~~~~~~~~~~~ll 205 (371)
.+. -.|.. .-.+..+.+...+.+ ..+++|.|+|.| +.+.|..|-
T Consensus 79 kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------T~dAQ~aLR 148 (351)
T KOG2035|consen 79 KKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------TRDAQHALR 148 (351)
T ss_pred ceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------hHHHHHHHH
Confidence 010 11221 222444444444333 359999999999 888999999
Q ss_pred HHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCC
Q psy6716 206 CQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDK 285 (371)
Q Consensus 206 ~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
+.|+.+.. ++++|..+|....+-+++++|+ ..+.+|.|+.++...++...+.+.++. .+
T Consensus 149 RTMEkYs~--------~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~------------lp 207 (351)
T KOG2035|consen 149 RTMEKYSS--------NCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQ------------LP 207 (351)
T ss_pred HHHHHHhc--------CceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhccc------------Cc
Confidence 99987754 7789999999999999999999 789999999999999999999998875 44
Q ss_pred cccHHHHHHHccC
Q psy6716 286 DVNIEVLAERLEG 298 (371)
Q Consensus 286 ~~~~~~la~~~~g 298 (371)
+.-+..+|+.+.|
T Consensus 208 ~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 208 KELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHhcc
Confidence 5567788888776
No 179
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.48 E-value=4.2e-13 Score=132.02 Aligned_cols=169 Identities=20% Similarity=0.226 Sum_probs=107.1
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhh-cC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE----eccccccccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDK-LR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI----TSSTLTSKWY 156 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v----~~~~l~~~~~ 156 (371)
.|.|.+.++..+.-.+.-- ....... .. ....+|||+|+||||||++|+++++.+.+..+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg--~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGG--VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCC--CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5899999988877655211 0000000 00 1224799999999999999999999876543222 2222221111
Q ss_pred chH-HH---HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc----cC-CCCCCCCEEEEe
Q psy6716 157 GDS-EK---LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS----VS-NEDPNKSVLILA 227 (371)
Q Consensus 157 g~~-~~---~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~-~~~~~~~v~vI~ 227 (371)
.+. .. .....+. ...+++++|||++.+ ....+..|+..|+.-.- .+ ....+.++.|||
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKM----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhC----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 000 00 0001111 223789999999999 66778888888864321 11 112356889999
Q ss_pred ecCCCC-------------CccHHHHhcccceEEe-cCCCHHHHHHHHHHHHh
Q psy6716 228 ATNFPW-------------DLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 228 ttn~~~-------------~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~ 266 (371)
|+|+.. .+++++++||+..+.+ ..|+.+...+|.++.+.
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999762 5899999999876655 78999999999988764
No 180
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.47 E-value=1.7e-12 Score=123.67 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=98.8
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEecc-cccccccchH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSS-TLTSKWYGDS 159 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~-~l~~~~~g~~ 159 (371)
.++|.+++++.+...+ ....+|||.||||||||++|+++|..++. +|..+.+. ..+...+|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 4789999999888776 44577999999999999999999997653 45544443 1223333321
Q ss_pred -HHHH--HHHHHHHHHh---CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc-ccCCCCCCCC-EEEEeecCC
Q psy6716 160 -EKLI--RLLFLLAKEL---APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA-SVSNEDPNKS-VLILAATNF 231 (371)
Q Consensus 160 -~~~~--~~~~~~a~~~---~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~-v~vI~ttn~ 231 (371)
-... ...|...... ...+||+|||..+ +...++.|+..|+... ..++...+.+ .+++++||.
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 0000 1112111100 1238999999888 7889999999996433 2222222222 233445563
Q ss_pred CC---CccHHHHhcccceEEecCCC-HHHHHHHHHHH
Q psy6716 232 PW---DLDEAFRRRLEKRIYVPIPD-QATRVSLLTIF 264 (371)
Q Consensus 232 ~~---~l~~~l~~rf~~~i~~~~p~-~~er~~il~~~ 264 (371)
.. ...+++..||...+.+|+|+ .++-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 22 12258999997788899986 45657777653
No 181
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.47 E-value=1.9e-14 Score=122.18 Aligned_cols=148 Identities=26% Similarity=0.312 Sum_probs=72.2
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-------------------
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS------------------- 141 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~------------------- 141 (371)
|++|+|++.+|..|.-.. . -.+++|++||||||||++|+++...+.-
T Consensus 2 f~dI~GQe~aKrAL~iAA----------a----G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA----------A----GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH----------H----CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHH----------c----CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 689999999999998766 1 1368999999999999999999875421
Q ss_pred ---------CeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc
Q psy6716 142 ---------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA 212 (371)
Q Consensus 142 ---------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~ 212 (371)
||.....+.-....+|......-..+..|. .+||||||+..+ ...+++.|...++...
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef----------~~~vld~Lr~ple~g~ 134 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF----------DRSVLDALRQPLEDGE 134 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS-----------HHHHHHHHHHHHHSB
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc----------CHHHHHHHHHHHHCCe
Confidence 111111111001111111110111222233 689999999888 7888999998887432
Q ss_pred cc-----CCCCCCCCEEEEeecCCC-----------------------CCccHHHHhcccceEEecCCCHH
Q psy6716 213 SV-----SNEDPNKSVLILAATNFP-----------------------WDLDEAFRRRLEKRIYVPIPDQA 255 (371)
Q Consensus 213 ~~-----~~~~~~~~v~vI~ttn~~-----------------------~~l~~~l~~rf~~~i~~~~p~~~ 255 (371)
.. .....+.++.+|+|+|.= ..+...+++||+..+.++..+.+
T Consensus 135 v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 135 VTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp EEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred EEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 11 111346688999998843 23556677788777777665543
No 182
>KOG0991|consensus
Probab=99.47 E-value=8.3e-13 Score=111.98 Aligned_cols=158 Identities=23% Similarity=0.273 Sum_probs=111.3
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----CeEEEeccccccc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-----NFFNITSSTLTSK 154 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~v~~~~l~~~ 154 (371)
.+.||+|.++.+..|.-.. +. +. .++++|.||||||||+-+.++|+++-. -+.++++++-.+-
T Consensus 25 ~l~dIVGNe~tv~rl~via----------~~-gn-mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIA----------KE-GN-MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHHHhhCCHHHHHHHHHHH----------Hc-CC-CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 4678999999999988766 22 22 247999999999999999999998633 3566777764331
Q ss_pred ccchHHHHHHHHHHHHH-HhCC---cEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 155 WYGDSEKLIRLLFLLAK-ELAP---SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~-~~~~---~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
.-....++ .|.+.+ ..+| .|++|||.|++ ....|..|-+.|+-+.. ..++..+||
T Consensus 93 --DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM----------T~gAQQAlRRtMEiyS~--------ttRFalaCN 151 (333)
T KOG0991|consen 93 --DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM----------TAGAQQALRRTMEIYSN--------TTRFALACN 151 (333)
T ss_pred --HHHHHHHH-HHHHhhccCCCCceeEEEeeccchh----------hhHHHHHHHHHHHHHcc--------cchhhhhhc
Confidence 11222222 233322 2233 49999999999 66677778777765443 457788999
Q ss_pred CCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCC
Q psy6716 231 FPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVD 271 (371)
Q Consensus 231 ~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~ 271 (371)
.-+.+-+.+.+|+ ..+.+...+..+...-+.......+++
T Consensus 152 ~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~ 191 (333)
T KOG0991|consen 152 QSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVN 191 (333)
T ss_pred chhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999 567777777777666666666655554
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=3.6e-12 Score=117.40 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=123.8
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-----------------
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN----------------- 142 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~----------------- 142 (371)
.|++|+|++.+++.+...+ .. +..++.+||+||+|+||+++|.++|+.+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i----------~~-~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAI----------KQ-NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHH----------Hh-CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4789999999999999988 22 3445789999999999999999999875321
Q ss_pred -eEEEeccccc-ccc--------cc--------hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhh
Q psy6716 143 -FFNITSSTLT-SKW--------YG--------DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRM 200 (371)
Q Consensus 143 -~~~v~~~~l~-~~~--------~g--------~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~ 200 (371)
++.+.+.... ++. .| -....++.+...+... ...|++||++|.| ....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m----------~~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM----------NEAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc----------CHHH
Confidence 1222211000 000 00 0011234443333322 2469999999999 6677
Q ss_pred HHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhc
Q psy6716 201 KSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN 280 (371)
Q Consensus 201 ~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~ 280 (371)
.+.||..|+.. + +.++|.+|+.++.+.+.+++|+ ..+.+++|+.++..+++.........
T Consensus 141 aNaLLK~LEEP--------p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~---------- 200 (314)
T PRK07399 141 ANALLKTLEEP--------G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL---------- 200 (314)
T ss_pred HHHHHHHHhCC--------C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc----------
Confidence 88999998643 3 4467778888999999999999 77999999999998888875432111
Q ss_pred ccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 281 VKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 281 ~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
+.+...++..+.| +++....+.+
T Consensus 201 -----~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 201 -----NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred -----hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 2234677777777 5655555554
No 184
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=7.6e-13 Score=123.61 Aligned_cols=159 Identities=25% Similarity=0.304 Sum_probs=108.6
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc--cccchHHH
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS--KWYGDSEK 161 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~--~~~g~~~~ 161 (371)
++|.++++..+...+ ....++||.||||||||++|+++|..++.+|+.+.|..... ...|...-
T Consensus 26 ~~g~~~~~~~~l~a~--------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 26 VVGDEEVIELALLAL--------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeccHHHHHHHHHHH--------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhH
Confidence 677777777776655 23467999999999999999999999999999999875332 22222111
Q ss_pred HHHHH-HHHHHHh-C---C---cEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-CC---CCCCCCEEEEeec
Q psy6716 162 LIRLL-FLLAKEL-A---P---SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-SN---EDPNKSVLILAAT 229 (371)
Q Consensus 162 ~~~~~-~~~a~~~-~---~---~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~---~~~~~~v~vI~tt 229 (371)
..... ....+.. . . +++++|||+.. ...+++.|+..|+..... .. ..-+...+||+|+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRA----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccC----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 11000 0000000 0 1 39999999988 778999999999864332 11 1235678889998
Q ss_pred C-----CCCCccHHHHhcccceEEecCC-CHHHHHHHHHHHHh
Q psy6716 230 N-----FPWDLDEAFRRRLEKRIYVPIP-DQATRVSLLTIFLQ 266 (371)
Q Consensus 230 n-----~~~~l~~~l~~rf~~~i~~~~p-~~~er~~il~~~~~ 266 (371)
| ....+++++++||...+.++.| +..+...++.....
T Consensus 162 Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 162 NPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCcc
Confidence 9 3356899999999888999998 55555555554443
No 185
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.44 E-value=5.1e-13 Score=130.10 Aligned_cols=210 Identities=19% Similarity=0.204 Sum_probs=128.4
Q ss_pred CchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHh
Q psy6716 19 PGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAI 98 (371)
Q Consensus 19 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i 98 (371)
....+.++. .++++++.||.....+...++.++....... . ... . ... ....++|.+.....+...+
T Consensus 89 ~~~~~~a~~-~ga~~~l~Kp~~~~~L~~~l~~~l~~~~~~~--~----~~~-~----~~~-~~~~lig~s~~~~~~~~~i 155 (441)
T PRK10365 89 VETAVEALK-TGALDYLIKPLDFDNLQATLEKALAHTHSID--A----ETP-A----VTA-SQFGMVGKSPAMQHLLSEI 155 (441)
T ss_pred HHHHHHHHH-hhhHHHhcCCCCHHHHHHHHHHHHHHHHHHH--H----hhh-h----hhc-cccceEecCHHHHHHHHHH
Confidence 445555665 6788999999887777777666554321100 0 000 0 000 1124677777777776665
Q ss_pred hccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccccccc-----chHHHHH----HHH
Q psy6716 99 VLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKWY-----GDSEKLI----RLL 166 (371)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~~-----g~~~~~~----~~~ 166 (371)
.........++++|++||||+++|++++..+. .+|+.++|..+..... |...... ...
T Consensus 156 ----------~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~ 225 (441)
T PRK10365 156 ----------ALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRR 225 (441)
T ss_pred ----------hhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCC
Confidence 22233446799999999999999999998764 5899999997653321 1100000 000
Q ss_pred HHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEEEeecCCC-------CCcc
Q psy6716 167 FLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLILAATNFP-------WDLD 236 (371)
Q Consensus 167 ~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~vI~ttn~~-------~~l~ 236 (371)
........+++||||||+.| +...+..|+..++.... . +......++++|++|+.. ..+.
T Consensus 226 ~g~~~~a~~gtl~ldei~~l----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~ 295 (441)
T PRK10365 226 EGRFVEADGGTLFLDEIGDI----------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295 (441)
T ss_pred CCceeECCCCEEEEeccccC----------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch
Confidence 00112234799999999999 67788889888874331 1 112234467889888764 1234
Q ss_pred HHHHhcccceEEecCCCHHHHHHHHH
Q psy6716 237 EAFRRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 237 ~~l~~rf~~~i~~~~p~~~er~~il~ 262 (371)
+.+..|+ ..+.+..|+..+|.+-+.
T Consensus 296 ~~l~~~l-~~~~i~~ppLreR~~Di~ 320 (441)
T PRK10365 296 QDLYYRL-NVVAIEVPSLRQRREDIP 320 (441)
T ss_pred HHHHHHh-ccceecCCChhhcchhHH
Confidence 4455566 457888888888876443
No 186
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=5.7e-12 Score=116.69 Aligned_cols=131 Identities=21% Similarity=0.320 Sum_probs=94.4
Q ss_pred CCCCccEEEEcCCCchHHHHHHHHHHHcCCC------------------------eEEEecccccccccchHHHHHHHHH
Q psy6716 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSN------------------------FFNITSSTLTSKWYGDSEKLIRLLF 167 (371)
Q Consensus 112 ~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~ 167 (371)
+..++.+||+||+|+||+++|+++|+.+.+. ++.+....- ++ .-....++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 4556789999999999999999999986431 222211100 00 01123344444
Q ss_pred HHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcc
Q psy6716 168 LLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRL 243 (371)
Q Consensus 168 ~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf 243 (371)
..+... ..-|++||++|.| .....+.||..|++ ++.++++|.+|+.++.+.+.+++|+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m----------~~~aaNaLLK~LEE--------Pp~~~~fiL~t~~~~~ll~TI~SRc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM----------NRNAANALLKSLEE--------PSGDTVLLLISHQPSRLLPTIKSRC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC----------CHHHHHHHHHHHhC--------CCCCeEEEEEECChhhCcHHHHhhc
Confidence 444332 3458999999999 77788999999864 3457888999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHH
Q psy6716 244 EKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 244 ~~~i~~~~p~~~er~~il~~~ 264 (371)
..+.+++|+.++....+...
T Consensus 158 -~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 -QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred -eeeeCCCcCHHHHHHHHHHh
Confidence 66999999999887777654
No 187
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.43 E-value=2.2e-13 Score=110.82 Aligned_cols=125 Identities=24% Similarity=0.363 Sum_probs=84.9
Q ss_pred cChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEecccccccccchHHH
Q psy6716 85 AGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNITSSTLTSKWYGDSEK 161 (371)
Q Consensus 85 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~~~~l~~~~~g~~~~ 161 (371)
+|.+..++.+++.+ ........+|||+|++||||+++|++++..... +|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l----------~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQL----------ERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHH----------HHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHH----------HHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46777788888777 344345567999999999999999999998754 67777777643
Q ss_pred HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-------CC
Q psy6716 162 LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-------WD 234 (371)
Q Consensus 162 ~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-------~~ 234 (371)
...+..+ .+++|||+|+|.| +...+..|+..+.... ..++++|+++..+ ..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L----------~~~~Q~~L~~~l~~~~-------~~~~RlI~ss~~~l~~l~~~~~ 119 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL----------SPEAQRRLLDLLKRQE-------RSNVRLIASSSQDLEELVEEGR 119 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-----------HHHHHHHHHHHHHCT-------TTTSEEEEEECC-CCCHHHHST
T ss_pred --HHHHHHc---CCCEEEECChHHC----------CHHHHHHHHHHHHhcC-------CCCeEEEEEeCCCHHHHhhccc
Confidence 2233333 5899999999999 7788888888886532 2356777777655 23
Q ss_pred ccHHHHhccc-ceEEec
Q psy6716 235 LDEAFRRRLE-KRIYVP 250 (371)
Q Consensus 235 l~~~l~~rf~-~~i~~~ 250 (371)
+.+.+..|+. ..+.+|
T Consensus 120 ~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 120 FSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp HHHHHHHHCSTCEEEE-
T ss_pred hhHHHHHHhCCCEEeCC
Confidence 5667777774 344444
No 188
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.43 E-value=1.3e-11 Score=112.69 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=52.1
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC------------CCccHHHHhc
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP------------WDLDEAFRRR 242 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~------------~~l~~~l~~r 242 (371)
|+||||||+|-| .-....-|-+.++.-. .-+||.+||+- ..+|..|++|
T Consensus 279 pGVLFIDEvHmL----------DiEcFsfLnralEs~~---------sPiiIlATNRg~~~irGt~~~sphGiP~DlLDR 339 (398)
T PF06068_consen 279 PGVLFIDEVHML----------DIECFSFLNRALESEL---------SPIIILATNRGITKIRGTDIISPHGIPLDLLDR 339 (398)
T ss_dssp E-EEEEESGGGS----------BHHHHHHHHHHHTSTT-----------EEEEEES-SEEE-BTTS-EEETT--HHHHTT
T ss_pred cceEEecchhhc----------cHHHHHHHHHHhcCCC---------CcEEEEecCceeeeccCccCcCCCCCCcchHhh
Confidence 899999999998 5556666666665322 23566777743 6688899999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 243 LEKRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 243 f~~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
+ ..+...+++.++..+|++..+...++
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v 366 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDV 366 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT-
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcC
Confidence 9 88999999999999999999988776
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.42 E-value=4.4e-13 Score=109.28 Aligned_cols=115 Identities=29% Similarity=0.327 Sum_probs=75.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc--ccchHHH-H-----HHH-HHHHHHHhCCcEEEeccchhhc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK--WYGDSEK-L-----IRL-LFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~--~~g~~~~-~-----~~~-~~~~a~~~~~~il~lDeid~l~ 187 (371)
+|||+||||||||++|+.+|..++.+++.+.++..... +.|...- . ... +....+ .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999999887764321 1110000 0 000 000011 4789999999988
Q ss_pred cCCCCChhhhhhhHHHHHHHhhccccc----CCCC-CCC------CEEEEeecCCCC----CccHHHHhcc
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASV----SNED-PNK------SVLILAATNFPW----DLDEAFRRRL 243 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~-~~~------~v~vI~ttn~~~----~l~~~l~~rf 243 (371)
...++..|+..++..... .... ... ++++|+|+|... .+++++++||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 677788888888743322 1111 111 489999999998 8999999998
No 190
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.42 E-value=4.5e-12 Score=108.83 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=99.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC------------------------eEEEecccccccccchHHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN------------------------FFNITSSTLTSKWYGDSEKLIRLLFL 168 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~ 168 (371)
..++.+||+||+|+|||++|+.+++.+... +..+.... .. .....++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 445679999999999999999999886432 12221111 00 11233444444
Q ss_pred HHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhccc
Q psy6716 169 LAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLE 244 (371)
Q Consensus 169 ~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~ 244 (371)
.+... ...|++|||+|.+ ....++.|+..|+.. +..+.+|.+|+.+..+.+++++|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l----------~~~~~~~Ll~~le~~--------~~~~~~il~~~~~~~l~~~i~sr~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM----------NEAAANALLKTLEEP--------PPNTLFILITPSPEKLLPTIRSRC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhh----------CHHHHHHHHHHhcCC--------CCCeEEEEEECChHhChHHHHhhc-
Confidence 44432 3469999999999 555677888888543 335667777777789999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 245 KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 245 ~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
..+.+++|+.++..+++... ++ ++..+..++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi--------------~~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GI--------------SEEAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CC--------------CHHHHHHHHHHcCC
Confidence 68999999999988888765 23 23357777777766
No 191
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.41 E-value=2.8e-12 Score=127.83 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=100.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEecccccccccchHH--HHHH-H--HHH--HHHHhCCcEEEeccchhh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSSTLTSKWYGDSE--KLIR-L--LFL--LAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~l~~~~~g~~~--~~~~-~--~~~--~a~~~~~~il~lDeid~l 186 (371)
.+|||.|+||||||++|+++|..++. +|+.+.+.......+|... ..+. . .+. ......+++||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998764 6888876444444444421 0000 0 000 011123579999999999
Q ss_pred ccCCCCChhhhhhhHHHHHHHhhccc----ccC-CCCCCCCEEEEeecCCCC---CccHHHHhcccceEEec-CCCHHHH
Q psy6716 187 CSHRSTSTDVTRRMKSELLCQMDGLA----SVS-NEDPNKSVLILAATNFPW---DLDEAFRRRLEKRIYVP-IPDQATR 257 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~-~~~~~~~v~vI~ttn~~~---~l~~~l~~rf~~~i~~~-~p~~~er 257 (371)
+...+..|+..|+... ..+ ....+.++.||+|+|..+ .+++.+++||...+.+. +|+.++|
T Consensus 97 ----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 97 ----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred ----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 7888999999997432 111 113356789999999875 68999999998877774 5788889
Q ss_pred HHHHHHHHh
Q psy6716 258 VSLLTIFLQ 266 (371)
Q Consensus 258 ~~il~~~~~ 266 (371)
.+|++..+.
T Consensus 167 ~eil~~~~~ 175 (589)
T TIGR02031 167 VEIVRRERC 175 (589)
T ss_pred HHHHHHHHH
Confidence 999988763
No 192
>PRK04132 replication factor C small subunit; Provisional
Probab=99.40 E-value=7.2e-12 Score=127.47 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=121.7
Q ss_pred CCccEEEEc--CCCchHHHHHHHHHHHc-----CCCeEEEecccccccccchHHHHHHHHHHHHHHhC------CcEEEe
Q psy6716 114 PWKGVLLVG--PPGTGKTMLAKAAATET-----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELA------PSIVFF 180 (371)
Q Consensus 114 ~~~~vLl~G--p~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~------~~il~l 180 (371)
|.-+-+..| |++.|||++|+++|+++ +.+++++|+++..+ ...++.....+.... ..|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444566778 99999999999999997 45799999987432 223444444333222 259999
Q ss_pred ccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHH
Q psy6716 181 DEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSL 260 (371)
Q Consensus 181 Deid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~i 260 (371)
||+|.| +...++.|+..|+.. +.++.+|++||.+..+.+++++|| ..+.|++|+.++....
T Consensus 637 DEaD~L----------t~~AQnALLk~lEep--------~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL----------TQDAQQALRRTMEMF--------SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC----------CHHHHHHHHHHhhCC--------CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHH
Confidence 999999 667789999999653 447889999999999999999999 7799999999999999
Q ss_pred HHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 261 LTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
++..+.+.++. .++..+..++..+.| +.+..-.+++.+
T Consensus 698 L~~I~~~Egi~------------i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 698 LRYIAENEGLE------------LTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHHHHHhcCCC------------CCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99888876653 345578899999888 455444554543
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=1.4e-11 Score=114.79 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=105.2
Q ss_pred CcccccC-hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC----------------
Q psy6716 80 KWADIAG-LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---------------- 142 (371)
Q Consensus 80 ~~~~i~G-~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---------------- 142 (371)
.|+.|.| ++.+++.+...+ . .+..++.+||+||+|+||+++|+++++.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~----------~-~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSI----------A-KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHH----------H-cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4677877 888999998887 2 23455778999999999999999999876331
Q ss_pred --------eEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhc
Q psy6716 143 --------FFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDG 210 (371)
Q Consensus 143 --------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 210 (371)
+..+... +.. -....++.+...+.. ...-|++|||+|.+ ....++.|+..|+.
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM----------TASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------CHHHHHHHHHHhcC
Confidence 1111111 000 011233344333331 12459999999999 67788899999964
Q ss_pred ccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHH
Q psy6716 211 LASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~ 262 (371)
++.++++|.+|+.+..+.+.+++|+ ..+++++|+.++....+.
T Consensus 137 --------Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 --------PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred --------CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 3457778888888899999999999 779999999988766664
No 194
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.39 E-value=3.8e-12 Score=118.84 Aligned_cols=149 Identities=26% Similarity=0.295 Sum_probs=106.0
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC----------------------
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---------------------- 140 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---------------------- 140 (371)
+++|.+.+...+..+. ...+..++.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~----------~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQA----------LESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHH----------HhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4677777777777776 22223334699999999999999999999876
Q ss_pred --CCeEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc
Q psy6716 141 --SNFFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 141 --~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 214 (371)
..++.+++++..... -....++.+....... ..-|++|||+|.| ....++.++..+...
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m----------t~~A~nallk~lEep--- 136 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL----------TEDAANALLKTLEEP--- 136 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH----------hHHHHHHHHHHhccC---
Confidence 356777776654321 1223333333333322 2469999999999 667888899888543
Q ss_pred CCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHH
Q psy6716 215 SNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~ 262 (371)
+.+.++|.+||.++.+-+.+++|+ ..+.|++|+...+....+
T Consensus 137 -----~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 -----PKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -----CCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 557899999999999999999999 678887766655444433
No 195
>KOG1969|consensus
Probab=99.38 E-value=1.8e-11 Score=119.07 Aligned_cols=172 Identities=22% Similarity=0.226 Sum_probs=112.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHH-H---hCCcEEEeccchhhccCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAK-E---LAPSIVFFDEIDSMCSHRS 191 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-~---~~~~il~lDeid~l~~~~~ 191 (371)
+-+||+||||.|||+||+.+|+.+|..+++|++++-.+. ......+..+...-. . ..|..|+|||||.-
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-----
Confidence 347899999999999999999999999999999975431 111222222222111 1 35899999999876
Q ss_pred CChhhhhhhHHHHHHHhh--cccccCCC-----------CCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHH
Q psy6716 192 TSTDVTRRMKSELLCQMD--GLASVSNE-----------DPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQAT 256 (371)
Q Consensus 192 ~~~~~~~~~~~~ll~~l~--~~~~~~~~-----------~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~e 256 (371)
....+..++..+. .....+.. ...-.-.|||.||. .-.|+|+. -|..++.|++|...-
T Consensus 400 -----~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 400 -----PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred -----cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhH
Confidence 4445555555554 11111111 11123468999997 44566666 577899999999988
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy6716 257 RVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLR 317 (371)
Q Consensus 257 r~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~ 317 (371)
..+-|+.++...++. .+...+..|++.+.+ ||+.-++.....+..
T Consensus 473 Lv~RL~~IC~rE~mr------------~d~~aL~~L~el~~~----DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 473 LVERLNEICHRENMR------------ADSKALNALCELTQN----DIRSCINTLQFLASN 517 (877)
T ss_pred HHHHHHHHHhhhcCC------------CCHHHHHHHHHHhcc----hHHHHHHHHHHHHHh
Confidence 888888888887774 223345555555554 888777755444433
No 196
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.38 E-value=1.4e-11 Score=119.46 Aligned_cols=149 Identities=23% Similarity=0.288 Sum_probs=97.0
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----CeEEEec------c
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS----NFFNITS------S 149 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~----~~~~v~~------~ 149 (371)
.+.++.|+..+++.+.-.+ ....+++|.||||+|||++++.++..+.. ..+.+.. .
T Consensus 189 d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 6777889888777654333 34467999999999999999999875421 1111100 0
Q ss_pred -----cc-------------cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcc
Q psy6716 150 -----TL-------------TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL 211 (371)
Q Consensus 150 -----~l-------------~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 211 (371)
.+ ....+|.........+..|. .++|||||++.+ ....+..|++.|+..
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~----------~~~~~~~L~~~LE~g 321 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEF----------ERRTLDALREPIESG 321 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhC----------CHHHHHHHHHHHHcC
Confidence 00 00012221111223344444 799999999988 678888888888643
Q ss_pred cc----c-CCCCCCCCEEEEeecCCCC---------------------CccHHHHhcccceEEecCCCHH
Q psy6716 212 AS----V-SNEDPNKSVLILAATNFPW---------------------DLDEAFRRRLEKRIYVPIPDQA 255 (371)
Q Consensus 212 ~~----~-~~~~~~~~v~vI~ttn~~~---------------------~l~~~l~~rf~~~i~~~~p~~~ 255 (371)
.. . .....+.++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 322 ~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 322 QIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 32 1 1123467899999999752 3677999999999999988543
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.36 E-value=1.6e-11 Score=116.11 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=91.7
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-------eEEEecc----
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------FFNITSS---- 149 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------~~~v~~~---- 149 (371)
++++.+.+...+.+...+ ....+++|+||||||||++|+.+|..+... .+.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L--------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL--------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH--------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 455666676766666555 234679999999999999999999887431 1222211
Q ss_pred cccccc----cch--HHHHHHHHHHHHHHh--CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--------
Q psy6716 150 TLTSKW----YGD--SEKLIRLLFLLAKEL--APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-------- 213 (371)
Q Consensus 150 ~l~~~~----~g~--~~~~~~~~~~~a~~~--~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-------- 213 (371)
++...+ .|- .......+...|... .|.+|+||||+..- ..++...++..|+.-..
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan---------i~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN---------LSKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC---------HHHhhhhhhhhccccccccccceee
Confidence 121111 110 001122333444433 47899999998762 34556666666652110
Q ss_pred ----c--CCCCCCCCEEEEeecCCCC----CccHHHHhcccceEEecC
Q psy6716 214 ----V--SNEDPNKSVLILAATNFPW----DLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 214 ----~--~~~~~~~~v~vI~ttn~~~----~l~~~l~~rf~~~i~~~~ 251 (371)
. ..-..+.++.||||+|..+ .+|.+++||| ..+.+.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 0 0124578999999999987 6899999999 5577764
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.35 E-value=3.2e-11 Score=120.47 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=85.8
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc--C-----------CCCCCCCEEEEeecCCC--CCccHHH
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV--S-----------NEDPNKSVLILAATNFP--WDLDEAF 239 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~-----------~~~~~~~v~vI~ttn~~--~~l~~~l 239 (371)
+++|||||++.| +...+..|++.|+..... + ....+.++.||+++|.. ..+++.+
T Consensus 218 gGtL~Ldei~~L----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 218 KGVLYIDEIKTM----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CCEEEEEChHhC----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 468888888888 566788888888642211 1 11234588999999975 5789999
Q ss_pred Hhccc---ceEEec--CC-CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH---ccC------CCHHHH
Q psy6716 240 RRRLE---KRIYVP--IP-DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER---LEG------YSSADI 304 (371)
Q Consensus 240 ~~rf~---~~i~~~--~p-~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---~~g------~s~~di 304 (371)
++||+ ..+.++ .| +.+.|.++.+.+.+....... ... .++..+..+.+. ..| .+.++|
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~------l~~-~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L 360 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGR------IPH-FTRDAVEEIVREAQRRAGRKDHLTLRLREL 360 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCC------CCc-CCHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99997 555553 34 455565555544332111000 001 122223333321 111 346899
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
..+++.|...+..+. ...|+.+|+.+|++...
T Consensus 361 ~~llR~A~~iA~~~~-----------------~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 361 GGLVRAAGDIAKSSG-----------------KVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHHHHHHHHHhcC-----------------CceecHHHHHHHHHHHH
Confidence 999999854433221 23799999999988763
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.1e-10 Score=107.48 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC------------------------
Q psy6716 87 LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN------------------------ 142 (371)
Q Consensus 87 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~------------------------ 142 (371)
+....+.+...+ . .+..++.+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~----------~-~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAF----------Q-QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHH----------H-cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455666666665 2 22445789999999999999999999876331
Q ss_pred eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 143 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
++.+.+.+ ++. -....++.+.+.+... ..-|++||++|.| .....+.||+.|++
T Consensus 76 ~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m----------~~~AaNaLLKtLEE-------- 133 (325)
T PRK06871 76 FHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERL----------TEAAANALLKTLEE-------- 133 (325)
T ss_pred EEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhh----------CHHHHHHHHHHhcC--------
Confidence 11121100 000 1123344443333322 2359999999999 77888999999954
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHH
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~ 264 (371)
++.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++..+.+...
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 4668899999999999999999999 77899999998877766653
No 200
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.33 E-value=1.9e-12 Score=108.68 Aligned_cols=117 Identities=25% Similarity=0.282 Sum_probs=77.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC----CeEEEecccccc----cccchHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS----NFFNITSSTLTS----KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~----~~~~v~~~~l~~----~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
|-..+||.||+|+|||.+|+++|+.+.. +++.++++.+.. ...-. ......-........+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~--~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVS--KLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCH--HHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhh--hhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999985 999999998876 21111 1111111111122246999999999
Q ss_pred hccCCCCCh-hhhhhhHHHHHHHhhcccccC---CCCCCCCEEEEeecCCC
Q psy6716 186 MCSHRSTST-DVTRRMKSELLCQMDGLASVS---NEDPNKSVLILAATNFP 232 (371)
Q Consensus 186 l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~---~~~~~~~v~vI~ttn~~ 232 (371)
..+...... .....+++.||..|++..-.. ....-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 976532222 233478899999998543321 12345689999999964
No 201
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.33 E-value=5e-13 Score=104.26 Aligned_cols=114 Identities=30% Similarity=0.294 Sum_probs=65.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc-ccc-ccccch-----HHHHHHHHHHHHHHhCCcEEEeccchhhccC
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSS-TLT-SKWYGD-----SEKLIRLLFLLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~-~l~-~~~~g~-----~~~~~~~~~~~a~~~~~~il~lDeid~l~~~ 189 (371)
+|||+|+||+|||++|+++|+.++..|.+|.+. ++. +...|. ..... .|..--. -..|+++|||+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f--~~~~GPi-f~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEF--EFRPGPI-FTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEE--EEEE-TT--SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCee--EeecChh-hhceeeecccccC---
Confidence 589999999999999999999999999988764 222 221111 00000 0000000 0259999999988
Q ss_pred CCCChhhhhhhHHHHHHHhhccccc-CCC--CCCCCEEEEeecCCCC-----CccHHHHhcc
Q psy6716 190 RSTSTDVTRRMKSELLCQMDGLASV-SNE--DPNKSVLILAATNFPW-----DLDEAFRRRL 243 (371)
Q Consensus 190 ~~~~~~~~~~~~~~ll~~l~~~~~~-~~~--~~~~~v~vI~ttn~~~-----~l~~~l~~rf 243 (371)
+.+.|+.|+..|.+..-. .+. .-+.+.+||||.|..+ .|++++++||
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 788999999999854432 111 2356789999999875 6889999998
No 202
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=3.5e-10 Score=102.75 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=118.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC-CeEEE---ecc----ccccc---ccc-----h-HHHHHHHH----HHHHHHhC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS-NFFNI---TSS----TLTSK---WYG-----D-SEKLIRLL----FLLAKELA 174 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~-~~~~v---~~~----~l~~~---~~g-----~-~~~~~~~~----~~~a~~~~ 174 (371)
..++|+||+|+|||++++.+++.+.. .+..+ ++. ++... ..| . .......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998753 22211 111 00000 001 1 01111111 12222345
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC--CCc----cHHHHhcccceEE
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP--WDL----DEAFRRRLEKRIY 248 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~--~~l----~~~l~~rf~~~i~ 248 (371)
+.+|+|||++.+. ......+ ..+...... ....+.|+.+.... +.+ ...+.+|+...++
T Consensus 124 ~~vliiDe~~~l~----------~~~~~~l-~~l~~~~~~----~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLT----------PELLEEL-RMLSNFQTD----NAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred CeEEEEECcccCC----------HHHHHHH-HHHhCcccC----CCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeee
Confidence 6799999999882 2223322 222222110 12223333333221 111 1346668878899
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy6716 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAM 328 (371)
Q Consensus 249 ~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~ 328 (371)
+++.+.++..+++...+...+.... .. .++..++.|++.+.|. ++.|..+|..++..+..+.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~-------~~-~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~--------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDA-------PV-FSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE--------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC-------CC-cCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC---------
Confidence 9999999999999988875542100 01 3445688999999985 6679999999988877753
Q ss_pred cCCCcccccccccHHHHHHHHHhCC
Q psy6716 329 KDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 329 ~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
...|+.+++.++++.++
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23799999999998875
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.4e-11 Score=117.95 Aligned_cols=215 Identities=17% Similarity=0.255 Sum_probs=147.8
Q ss_pred HHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc--------
Q psy6716 68 ILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-------- 139 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-------- 139 (371)
...++......-.++-++|.++.++++.+.+.. +..++-+|.|+||+|||.++..+|...
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~ 223 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES 223 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH
Confidence 333333344445677899999999988887721 333567889999999999999999864
Q ss_pred --CCCeEEEeccccc--ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 140 --KSNFFNITSSTLT--SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 140 --~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
+..++.++.+.+. .+|-|+.+..++.+.+..+...+.||||||||.+.+.....++ .-..-+-|.-.|.
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLA------ 296 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALA------ 296 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHh------
Confidence 3457888888776 4688999999999999999888999999999999876544222 1122222222221
Q ss_pred CCCCCCCEEEEeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 216 NEDPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
.+.+.+|++|+..+ .-|++|-||| ..+.+..|+.++-..|++-+-..+.....+. ..+..+.
T Consensus 297 ----RGeL~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~--------i~D~Al~ 363 (786)
T COG0542 297 ----RGELRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVR--------ITDEALV 363 (786)
T ss_pred ----cCCeEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCce--------ecHHHHH
Confidence 44678888887542 2478999999 6699999999999999998877665432221 2233344
Q ss_pred HHHHHcc-----CCCHHHHHHHHHHHHHH
Q psy6716 291 VLAERLE-----GYSSADITIVCRDAAFM 314 (371)
Q Consensus 291 ~la~~~~-----g~s~~di~~l~~~a~~~ 314 (371)
..+..+. -|-|.---.++.+|+..
T Consensus 364 aAv~LS~RYI~dR~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 364 AAVTLSDRYIPDRFLPDKAIDLLDEAGAR 392 (786)
T ss_pred HHHHHHHhhcccCCCCchHHHHHHHHHHH
Confidence 4444433 34445455666666533
No 204
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.31 E-value=9e-11 Score=119.08 Aligned_cols=170 Identities=17% Similarity=0.112 Sum_probs=103.7
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhh--------c-CCCCccEEEEcCCCchHHHHHHHHHHHcCC-------CeEEE
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDK--------L-RRPWKGVLLVGPPGTGKTMLAKAAATETKS-------NFFNI 146 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~--------~-~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------~~~~v 146 (371)
.|.|.+.+|+.|.-.+.--......... . -....+|||+|+||||||.+|+++|+...+ ++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 5899999999887555222110000000 0 022347999999999999999999986543 33444
Q ss_pred ecccccccccchHHHH---HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc----cC-CCC
Q psy6716 147 TSSTLTSKWYGDSEKL---IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS----VS-NED 218 (371)
Q Consensus 147 ~~~~l~~~~~g~~~~~---~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~-~~~ 218 (371)
.+..... ..+..... -...+. ....+++||||++.+ +...+..|+..|+.-.. .+ ...
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkm----------s~~~Q~aLlEaMEqqtIsI~KaGi~~t 596 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKC----------HNESRLSLYEVMEQQTVTIAKAGIVAT 596 (915)
T ss_pred cccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhC----------CHHHHHHHHHHHhCCEEEEecCCccee
Confidence 3333211 00000000 001111 223689999999999 67778888888864321 11 123
Q ss_pred CCCCEEEEeecCCC-------------CCccHHHHhcccceEEe-cCCCHHHHHHHHHHHHh
Q psy6716 219 PNKSVLILAATNFP-------------WDLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 219 ~~~~v~vI~ttn~~-------------~~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~ 266 (371)
-+.++.|||++|+. -.+++++++||+.++.+ +.|+.+.=..|..+.+.
T Consensus 597 L~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 597 LKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 45689999999975 24679999999876554 66776665566555553
No 205
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-11 Score=108.77 Aligned_cols=128 Identities=27% Similarity=0.413 Sum_probs=87.7
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhh---cCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccchH
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDK---LRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYGDS 159 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g~~ 159 (371)
++|++..|+.|.-++...-.+-..... ..-...++||.||+|||||.||+.+|+.++.||..-++..+.. .|+|+-
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 789999888776544222110000000 1112357999999999999999999999999999999988873 577764
Q ss_pred -HHHHHHHHHHH----HHhCCcEEEeccchhhccCCCCCh---hh-hhhhHHHHHHHhhcc
Q psy6716 160 -EKLIRLLFLLA----KELAPSIVFFDEIDSMCSHRSTST---DV-TRRMKSELLCQMDGL 211 (371)
Q Consensus 160 -~~~~~~~~~~a----~~~~~~il~lDeid~l~~~~~~~~---~~-~~~~~~~ll~~l~~~ 211 (371)
+..+..++..+ .+...+|+||||||.++.+..+.. +. ..-+|..||..+++.
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 33344444333 233478999999999998766543 22 246788999999864
No 206
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.2e-10 Score=106.50 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=90.8
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC------------------------eEEEecccccccccchHHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN------------------------FFNITSSTLTSKWYGDSEKLIRLLFL 168 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~ 168 (371)
+.++.+||+||+|+||+++|.++|+.+-+. +..+.+..- ... -....++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 455789999999999999999999876331 111211100 000 01223344433
Q ss_pred HHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhccc
Q psy6716 169 LAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLE 244 (371)
Q Consensus 169 ~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~ 244 (371)
.+... ..-|++||++|.| .....+.||+.|++ ++.++++|.+|+.++.+.+.++||+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--------Pp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL----------TDAAANALLKTLEE--------PPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhh----------CHHHHHHHHHHhcC--------CCCCeEEEEEECChhhChHHHHhccc
Confidence 33322 3459999999999 77888999999954 46688999999999999999999994
Q ss_pred ceEEecCCCHHHHHHHHH
Q psy6716 245 KRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 245 ~~i~~~~p~~~er~~il~ 262 (371)
.+.+++|+.++....+.
T Consensus 161 -~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLS 177 (334)
T ss_pred -cccCCCCCHHHHHHHHH
Confidence 68999999887776664
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.28 E-value=5.9e-11 Score=99.06 Aligned_cols=134 Identities=23% Similarity=0.275 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----------------------C
Q psy6716 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-----------------------N 142 (371)
Q Consensus 86 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----------------------~ 142 (371)
|++.+.+.|...+ . .+..+..+||+||+|+||+++|+++++.+.. .
T Consensus 1 gq~~~~~~L~~~~----------~-~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLI----------K-SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHH----------H-CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHH----------H-cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7788888888877 2 2344577999999999999999999987532 1
Q ss_pred eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 143 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
++.++....... -....++.+...+... ..-|++|||+|.| ....++.||..|+..
T Consensus 70 ~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEep------- 129 (162)
T PF13177_consen 70 FIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEEP------- 129 (162)
T ss_dssp EEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHST-------
T ss_pred eEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcCC-------
Confidence 333322221000 0123333443333222 2459999999999 788999999999754
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCC
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p 252 (371)
+.++++|.+|+.++.+.+.+++|+ ..+.+++.
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 458899999999999999999999 66777654
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.28 E-value=3.8e-11 Score=97.21 Aligned_cols=121 Identities=31% Similarity=0.457 Sum_probs=80.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC---eEEEecccccccc--------------cchHHHHHHHHHHHHHHhCCcEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN---FFNITSSTLTSKW--------------YGDSEKLIRLLFLLAKELAPSIV 178 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~---~~~v~~~~l~~~~--------------~g~~~~~~~~~~~~a~~~~~~il 178 (371)
..++|+||||||||++++.++..+... ++.++++...... ...........+..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999998775 8888877644321 12334456677888887778999
Q ss_pred EeccchhhccCCCCChhhhhhhHHHHHHH------hhcccccCCCCCCCCEEEEeecCC-CCCccHHHHhcccceEEecC
Q psy6716 179 FFDEIDSMCSHRSTSTDVTRRMKSELLCQ------MDGLASVSNEDPNKSVLILAATNF-PWDLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 179 ~lDeid~l~~~~~~~~~~~~~~~~~ll~~------l~~~~~~~~~~~~~~v~vI~ttn~-~~~l~~~l~~rf~~~i~~~~ 251 (371)
++||++.+.... ....... .... .......+|+++|. ....+..+..|++..+.+..
T Consensus 83 iiDei~~~~~~~----------~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 83 ILDEITSLLDAE----------QEALLLLLEELRLLLLL------KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred EEECCcccCCHH----------HHHHHHhhhhhHHHHHH------HhcCCCEEEEEeCCCccCchhhhhhccceEEEecC
Confidence 999999985421 1111110 0000 01345678888885 33455566668877777655
Q ss_pred C
Q psy6716 252 P 252 (371)
Q Consensus 252 p 252 (371)
+
T Consensus 147 ~ 147 (148)
T smart00382 147 I 147 (148)
T ss_pred C
Confidence 4
No 209
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.27 E-value=1.1e-11 Score=119.75 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=104.1
Q ss_pred cChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC--CCeEEEeccccccccc-----c
Q psy6716 85 AGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK--SNFFNITSSTLTSKWY-----G 157 (371)
Q Consensus 85 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~--~~~~~v~~~~l~~~~~-----g 157 (371)
++.+.....+...+ .+......++|+.|.|||||..++|+++..+. .||+.|+|..+..... |
T Consensus 316 ~~~d~s~a~l~rk~----------~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKA----------ERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHH----------HHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 35555555555444 33334446799999999999999999998875 4899999998875432 2
Q ss_pred hH----H----HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--cCCCCCCCCEEEEe
Q psy6716 158 DS----E----KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--VSNEDPNKSVLILA 227 (371)
Q Consensus 158 ~~----~----~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~~~~v~vI~ 227 (371)
.. . +..+..+..| .+++||||||..| +..+|..||+.|.+..- .+....+.+|.||+
T Consensus 386 y~~GafTga~~kG~~g~~~~A---~gGtlFldeIgd~----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ 452 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQA---DGGTLFLDEIGDM----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIA 452 (606)
T ss_pred cCccccccchhccccccceec---CCCccHHHHhhhc----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEe
Confidence 11 1 1122233333 3789999999998 88999999999985432 34444677999999
Q ss_pred ecCCC-------CCccHHHHhcccceEEecCCCHHHHHHH
Q psy6716 228 ATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVSL 260 (371)
Q Consensus 228 ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~i 260 (371)
+|+.+ ..+.+.|.-|+ ..+.+.+|+..+|.+-
T Consensus 453 ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~d~ 491 (606)
T COG3284 453 ATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERSDR 491 (606)
T ss_pred ccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccccc
Confidence 99985 12223333366 4567788888888763
No 210
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.23 E-value=1.4e-10 Score=115.50 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=89.2
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--cC-----------CCCCCCCEEEEeecCCC--CCccHHH
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--VS-----------NEDPNKSVLILAATNFP--WDLDEAF 239 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-----------~~~~~~~v~vI~ttn~~--~~l~~~l 239 (371)
+++|||||++.| +...+..|++.|+.... .+ ....+.++.||+++|.. ..+++.|
T Consensus 227 GGtL~LDei~~L----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 227 KGVLFIDEINTL----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred CcEEEEeChHhC----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 579999999998 56678888888853221 01 12234578899999885 4568899
Q ss_pred Hhccc---ceEEec--CC-CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHH---HccC------CCHHHH
Q psy6716 240 RRRLE---KRIYVP--IP-DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE---RLEG------YSSADI 304 (371)
Q Consensus 240 ~~rf~---~~i~~~--~p-~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~~~g------~s~~di 304 (371)
..||. ..+.+. .+ +.+.+..+++.+.+....... ... .+...+..+.+ +-.| ...++|
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~------l~~-f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l 369 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGK------IPH-FDRDAVEEIIREAKRRAGRKGHLTLKLRDL 369 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccC------CCC-CCHHHHHHHHHHHHHHhCCccccccCHHHH
Confidence 99885 344443 22 345566666544443321000 001 11112223322 1122 235788
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHH
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFT 365 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 365 (371)
..+++.|...+..+. ...++.+|+.+|+.. ..++.....+.|.
T Consensus 370 ~~l~r~a~~~a~~~~-----------------~~~i~~~~v~~a~~~-~~~i~~~~~~~~l 412 (637)
T PRK13765 370 GGLVRVAGDIARSEG-----------------AELTTAEHVLEAKKI-ARSIEQQLADRYI 412 (637)
T ss_pred HHHHHHHHHHHHhhc-----------------cceecHHHHHHHHHh-hhhhhHHHHHHHh
Confidence 888888776665543 236788888888754 2445555444443
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=7.1e-10 Score=102.82 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=92.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC-------------------------eEEEeccccccc-------------
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN-------------------------FFNITSSTLTSK------------- 154 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------------------------~~~v~~~~l~~~------------- 154 (371)
+.++++||+||+|+||+++|+++|+.+.+. ++.+.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 455789999999999999999999876442 111211100000
Q ss_pred -ccc---------hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCC
Q psy6716 155 -WYG---------DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPN 220 (371)
Q Consensus 155 -~~g---------~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 220 (371)
-.| -....++.+...+... ..-|++||++|.| .....+.||..|++ ++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--------Pp 160 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL----------NVAAANALLKTLEE--------PP 160 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------CHHHHHHHHHHhcC--------CC
Confidence 000 0112334443333222 2349999999999 67788999999964 46
Q ss_pred CCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHH
Q psy6716 221 KSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTI 263 (371)
Q Consensus 221 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~ 263 (371)
.++++|.+|+.++.|.+.++||+ ..+.+++|+.++..+.+..
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred cCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 68899999999999999999999 6799999999888877755
No 212
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=6.1e-10 Score=102.39 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------------eEE
Q psy6716 87 LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---------------------FFN 145 (371)
Q Consensus 87 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---------------------~~~ 145 (371)
+..+.+.+...+ . .+..++.+||+||+|+||+++|.++|+.+.+. ++.
T Consensus 9 ~~~~~~~l~~~~----------~-~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAAL----------D-AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHH----------H-cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 456667776665 2 23445789999999999999999999875331 111
Q ss_pred Ee--cccccccc-cchHHHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 146 IT--SSTLTSKW-YGDSEKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 146 v~--~~~l~~~~-~g~~~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
+. +..-..+. ..-....++.+...+...+ .-|++||++|.| .....+.||+.|++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE-------- 139 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI----------NRAACNALLKTLEE-------- 139 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh----------CHHHHHHHHHHhhC--------
Confidence 10 00000000 0001223444444443322 359999999999 67788999999864
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHH
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~ 262 (371)
++.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++-...+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHH
Confidence 3557788888999999999999999 778999999987766665
No 213
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-10 Score=102.96 Aligned_cols=89 Identities=24% Similarity=0.345 Sum_probs=64.3
Q ss_pred CCcEEEeccchhhccCCCCCh-hhh-hhhHHHHHHHhhccc--ccCCCCCCCCEEEEeec----CCCCCccHHHHhcccc
Q psy6716 174 APSIVFFDEIDSMCSHRSTST-DVT-RRMKSELLCQMDGLA--SVSNEDPNKSVLILAAT----NFPWDLDEAFRRRLEK 245 (371)
Q Consensus 174 ~~~il~lDeid~l~~~~~~~~-~~~-~~~~~~ll~~l~~~~--~~~~~~~~~~v~vI~tt----n~~~~l~~~l~~rf~~ 245 (371)
+.+|+||||||.++.+...+. +.+ ..+|..||-.+++-. ...+..+..++++||+. ..|++|-|.|.-||+-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 367999999999998765332 322 346666776666432 22333456788888875 5678889999999999
Q ss_pred eEEecCCCHHHHHHHHH
Q psy6716 246 RIYVPIPDQATRVSLLT 262 (371)
Q Consensus 246 ~i~~~~p~~~er~~il~ 262 (371)
.+++...+.+.-..|+.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988777663
No 214
>PRK08116 hypothetical protein; Validated
Probab=99.20 E-value=1.8e-10 Score=104.07 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=75.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH----HHHHHHHHHHHHHhCCcEEEeccchhhc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS----EKLIRLLFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~----~~~~~~~~~~a~~~~~~il~lDeid~l~ 187 (371)
+.+++|+|++|||||+||.++++++ +.+++.++..++...+.... ......++.... ...+|+|||++.-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 67888888777654322110 011112222222 35699999995431
Q ss_pred cCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-CC----ccHHHHhcc---cceEEecCCCH
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-WD----LDEAFRRRL---EKRIYVPIPDQ 254 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-~~----l~~~l~~rf---~~~i~~~~p~~ 254 (371)
. ....+..|...++.... ....+|.|||.+ .. ++..+.+|+ ...+.++-|+.
T Consensus 192 ~--------t~~~~~~l~~iin~r~~-------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------TEWAREKVYNIIDSRYR-------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred C--------CHHHHHHHHHHHHHHHH-------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1 23345566666765432 123466778765 22 456777774 23456666664
No 215
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.20 E-value=2e-10 Score=106.42 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=112.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc------c-
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS------T- 150 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~------~- 150 (371)
...|.-++|++..+..|.-....| .-.++||-|+.|||||+++|+||..+.---+...|. +
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 346777999999999876544222 226899999999999999999998774321111220 0
Q ss_pred ------cccc---------------cc----chHHH----------HHHH---HH--HHHHHhCCcEEEeccchhhccCC
Q psy6716 151 ------LTSK---------------WY----GDSEK----------LIRL---LF--LLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 151 ------l~~~---------------~~----g~~~~----------~~~~---~~--~~a~~~~~~il~lDeid~l~~~~ 190 (371)
...+ ++ +.++. .++. .| ....+...+|||+||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 0000 00 11111 1110 00 0111122589999999999
Q ss_pred CCChhhhhhhHHHHHHHhhcc-ccc---C-CCCCCCCEEEEeecCCC-CCccHHHHhcccceEEecCC-CHHHHHHHHHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGL-ASV---S-NEDPNKSVLILAATNFP-WDLDEAFRRRLEKRIYVPIP-DQATRVSLLTI 263 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~-~~~---~-~~~~~~~v~vI~ttn~~-~~l~~~l~~rf~~~i~~~~p-~~~er~~il~~ 263 (371)
...++..||+.+... ... + ....+.++++|+|+|.. ..|-+.|++||...+.+..| +.++|.+|++.
T Consensus 157 ------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 157 ------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred ------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 788999999988753 111 1 12467799999999987 46889999999999988655 88999999987
Q ss_pred HHhc
Q psy6716 264 FLQN 267 (371)
Q Consensus 264 ~~~~ 267 (371)
-+.-
T Consensus 231 ~~~f 234 (423)
T COG1239 231 RLAF 234 (423)
T ss_pred HHHh
Confidence 7654
No 216
>KOG1942|consensus
Probab=99.19 E-value=1.3e-09 Score=95.87 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=65.1
Q ss_pred CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC-------------CCCccHHHH
Q psy6716 174 APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF-------------PWDLDEAFR 240 (371)
Q Consensus 174 ~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~-------------~~~l~~~l~ 240 (371)
-|+||||||++.| .-.....|-+.++.-- .+ +||.+||+ |..+++.++
T Consensus 296 vPGVLFIDEVhML----------DiEcFTyL~kalES~i--------aP-ivifAsNrG~~~irGt~d~~sPhGip~dll 356 (456)
T KOG1942|consen 296 VPGVLFIDEVHML----------DIECFTYLHKALESPI--------AP-IVIFASNRGMCTIRGTEDILSPHGIPPDLL 356 (456)
T ss_pred cCcceEeeehhhh----------hhHHHHHHHHHhcCCC--------Cc-eEEEecCCcceeecCCcCCCCCCCCCHHHh
Confidence 3899999999988 4555555666664322 23 45556654 356789999
Q ss_pred hcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 241 RRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 241 ~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
+|+ .+|..-+.+.++.++|++...+..++. .++..+..++.....
T Consensus 357 DRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~------------~~e~a~~~l~~~gt~ 401 (456)
T KOG1942|consen 357 DRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQ------------VEEEALDLLAEIGTS 401 (456)
T ss_pred hhe-eEEeeccCCHHHHHHHHHHHHhhhcce------------ecHHHHHHHHhhccc
Confidence 999 677777888899999999998877764 344456667766443
No 217
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.18 E-value=1.7e-09 Score=97.01 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=113.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC---------CCeEEEecccccccc----------------cchHHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK---------SNFFNITSSTLTSKW----------------YGDSEKLIRLLFLLA 170 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~---------~~~~~v~~~~l~~~~----------------~g~~~~~~~~~~~~a 170 (371)
.++||+|++|.|||++++..++... .|++.+.+..-++.. ..........+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986532 367777654332210 011223333445666
Q ss_pred HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC--CccHHHHhcccceEE
Q psy6716 171 KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW--DLDEAFRRRLEKRIY 248 (371)
Q Consensus 171 ~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~rf~~~i~ 248 (371)
+..+.-+|+|||++.++.. +..-+..+++.|..+...- .-.++.+||..-.. .-|+.+.+|| ..+.
T Consensus 142 r~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~NeL----~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~ 209 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGNEL----QIPIVGVGTREAYRALRTDPQLASRF-EPFE 209 (302)
T ss_pred HHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhhcc----CCCeEEeccHHHHHHhccCHHHHhcc-CCcc
Confidence 7777899999999998654 2233455555554443211 22444444432222 2368888899 5566
Q ss_pred ecC-CCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 249 VPI-PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 249 ~~~-p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
+|. ...++...++..+-...++...- .+....-...|-..+.| +.+++..+++.|+..|++..
T Consensus 210 Lp~W~~d~ef~~LL~s~e~~LPLr~~S-------~l~~~~la~~i~~~s~G-~iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 210 LPRWELDEEFRRLLASFERALPLRKPS-------NLASPELARRIHERSEG-LIGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCCCCC-------CCCCHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhcC
Confidence 654 34456677888888777764221 11222223456667777 55689999999999999865
No 218
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.2e-12 Score=117.05 Aligned_cols=151 Identities=26% Similarity=0.276 Sum_probs=92.1
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----------------
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS----------------- 141 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~----------------- 141 (371)
..|.|+.|++..|+.+.-.. .-.+++|++||||||||++|+.+..-+.-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 36889999999999998766 33478999999999999999988654311
Q ss_pred ------------CeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 142 ------------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 142 ------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
||..-..+.-....+|......-.-...|. .+||||||+-.+ ...+++.|..-|+
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef----------~~~iLe~LR~PLE 308 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF----------KRSILEALREPLE 308 (490)
T ss_pred cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh----------hHHHHHHHhCccc
Confidence 111000000000111111000001112222 689999999776 5666666666665
Q ss_pred ccccc-----CCCCCCCCEEEEeecCCC-----------------------CCccHHHHhcccceEEecCCCHHH
Q psy6716 210 GLASV-----SNEDPNKSVLILAATNFP-----------------------WDLDEAFRRRLEKRIYVPIPDQAT 256 (371)
Q Consensus 210 ~~~~~-----~~~~~~~~v~vI~ttn~~-----------------------~~l~~~l~~rf~~~i~~~~p~~~e 256 (371)
..... .....+.++.+|+++|.- ..+...+++|++..+.++.++..+
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 32211 112446678888998854 234567788999888888776433
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.17 E-value=1e-09 Score=101.33 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=110.5
Q ss_pred Ccc-cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-------CeEEEec---
Q psy6716 80 KWA-DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-------NFFNITS--- 148 (371)
Q Consensus 80 ~~~-~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------~~~~v~~--- 148 (371)
-|+ ++.|+++++.++.+++... ..+.+...+.++|+||||+|||++|++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~------a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSA------AQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHH------HhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 355 8999999999998887321 1222334466899999999999999999998866 7777755
Q ss_pred -cccccccc---------------------------------------c---------------------------hHHH
Q psy6716 149 -STLTSKWY---------------------------------------G---------------------------DSEK 161 (371)
Q Consensus 149 -~~l~~~~~---------------------------------------g---------------------------~~~~ 161 (371)
+.+...-+ | ...+
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~q 201 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQ 201 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcc
Confidence 22111000 0 0000
Q ss_pred HHHHHHH----------------------HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC--C-
Q psy6716 162 LIRLLFL----------------------LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS--N- 216 (371)
Q Consensus 162 ~~~~~~~----------------------~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~- 216 (371)
.+..+.. .......|++-++|+.+. ..+++..||..++...... .
T Consensus 202 di~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~----------~~~~l~~LL~~~qE~~v~~~~~~ 271 (361)
T smart00763 202 DISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA----------DIKFLHPLLTATQEGNIKGTGGF 271 (361)
T ss_pred cHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC----------CHHHHHHHhhhhhcceEecCCcc
Confidence 0000000 000112367777787776 6788999999998544321 1
Q ss_pred CCCCCCEEEEeecCCC-------CCccHHHHhcccceEEecCC-CHHHHHHHHHHHHhc
Q psy6716 217 EDPNKSVLILAATNFP-------WDLDEAFRRRLEKRIYVPIP-DQATRVSLLTIFLQN 267 (371)
Q Consensus 217 ~~~~~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p-~~~er~~il~~~~~~ 267 (371)
...+.+.+||+++|.. ....+++++|+. .+.+|.| +..+-.+|.+..+..
T Consensus 272 ~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 272 AMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccceEEEEeCCHHHHhhhhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1334567889999987 255789999994 7888876 667778888888764
No 220
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1e-09 Score=100.87 Aligned_cols=144 Identities=20% Similarity=0.166 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-----------------------
Q psy6716 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN----------------------- 142 (371)
Q Consensus 86 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~----------------------- 142 (371)
.+.+..+.+...+ . .++.++.+||+||.|+||+.+|+++|+.+-+.
T Consensus 7 Wl~~~~~~l~~~~----------~-~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 7 WLVPVWQNWKAGL----------D-AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred cHHHHHHHHHHHH----------H-cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3556667777665 2 23455789999999999999999999875321
Q ss_pred eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 143 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
++.+.+..- ++.. ....++.+...+... ..-|++||++|.| .....+.||+.+++
T Consensus 76 ~~~i~p~~~-~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEE-------- 134 (319)
T PRK06090 76 LHVIKPEKE-GKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM----------NESASNALLKTLEE-------- 134 (319)
T ss_pred EEEEecCcC-CCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh----------CHHHHHHHHHHhcC--------
Confidence 222222110 0000 122334433333222 2359999999999 67788999999954
Q ss_pred CCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHH
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~ 262 (371)
++.++++|.+|+.++.+.+.++||+ ..+.+++|+.++..+.+.
T Consensus 135 Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 135 PAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred CCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHH
Confidence 4568899999999999999999999 679999999987777664
No 221
>KOG0990|consensus
Probab=99.15 E-value=4.4e-10 Score=100.01 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=110.0
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCe------EEEeccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF------FNITSSTLT 152 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~------~~v~~~~l~ 152 (371)
..+.++++.+++...+.++... ... .++|+|||||||||+...+.|..+..+. ..++.++-.
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~-----------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM-----------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC-----------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 4567788888888888877522 122 3899999999999999999999887741 112222211
Q ss_pred ccccchHHHHHHHHHHHHHH-------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 153 SKWYGDSEKLIRLLFLLAKE-------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~-------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
+. +..+.....|...+. ..+..++|||.|.+ ....|++|-+.+..+. .++.+
T Consensus 106 gi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM----------T~~AQnALRRviek~t--------~n~rF 164 (360)
T KOG0990|consen 106 GI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM----------TRDAQNALRRVIEKYT--------ANTRF 164 (360)
T ss_pred CC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh----------hHHHHHHHHHHHHHhc--------cceEE
Confidence 11 112222233444442 24679999999999 7888888888776553 46778
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
...+|++..+.+++++||.. +.+.+.+...-...+.+.......
T Consensus 165 ~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 165 ATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchh
Confidence 88899999999999999954 666666766777777777765543
No 222
>PRK12377 putative replication protein; Provisional
Probab=99.13 E-value=2.9e-10 Score=100.94 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCCccccc----ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 77 TNVKWADIA----GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 77 ~~~~~~~i~----G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
...+|+++. |+..++.....++ ........+++|+||||||||+||.++++.+ +..++.++..
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a----------~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIA----------DELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHH----------HHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 344677764 3344455545444 1111223579999999999999999999886 5677777777
Q ss_pred cccccccchHHH--HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 150 TLTSKWYGDSEK--LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 150 ~l~~~~~g~~~~--~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
++.......... .....+... ....+|+|||++.... +...+..|...++.... ....+|.
T Consensus 139 ~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~--------s~~~~~~l~~ii~~R~~-------~~~ptii 201 (248)
T PRK12377 139 DVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE--------TKNEQVVLNQIIDRRTA-------SMRSVGM 201 (248)
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC--------CHHHHHHHHHHHHHHHh-------cCCCEEE
Confidence 765533211100 111222222 3467999999966522 22234456666654332 1234566
Q ss_pred ecCCC-----CCccHHHHhcc
Q psy6716 228 ATNFP-----WDLDEAFRRRL 243 (371)
Q Consensus 228 ttn~~-----~~l~~~l~~rf 243 (371)
|||.. ..+...+.+|+
T Consensus 202 tSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 202 LTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred EcCCCHHHHHHHhhHHHHHHH
Confidence 88865 22445555655
No 223
>KOG0745|consensus
Probab=99.12 E-value=5.2e-10 Score=103.09 Aligned_cols=137 Identities=30% Similarity=0.468 Sum_probs=91.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc-ccccch-HHHHHHHHHHHH----HHhCCcEEEeccchhhccC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT-SKWYGD-SEKLIRLLFLLA----KELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~-~~~~g~-~~~~~~~~~~~a----~~~~~~il~lDeid~l~~~ 189 (371)
.+|||.||+|+|||.||+.+|+-++.||...||..+. ..|+|+ .+..+..++..| .+.+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5799999999999999999999999999999999886 357775 455566665544 3446799999999999854
Q ss_pred CCCCh---h-hhhhhHHHHHHHhhccccc----CC-CCCCCCEEEEeecCCC-------CCccHHHHhccc-ceEEecCC
Q psy6716 190 RSTST---D-VTRRMKSELLCQMDGLASV----SN-EDPNKSVLILAATNFP-------WDLDEAFRRRLE-KRIYVPIP 252 (371)
Q Consensus 190 ~~~~~---~-~~~~~~~~ll~~l~~~~~~----~~-~~~~~~v~vI~ttn~~-------~~l~~~l~~rf~-~~i~~~~p 252 (371)
..... + .-.-+|..||..+++..-. +. +..+...+.|=|+|-. ..|+.-+.+|.+ ..+-|..|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 32221 1 1245788899988853221 11 1223334444444432 456777777653 44555555
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=2.1e-09 Score=106.95 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=115.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE-E---ecccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN-I---TSSTLTS 153 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~-v---~~~~l~~ 153 (371)
...+++++|....+..++.++.... ....+...++|+||||||||++++.+|+.++..++. + +|.....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 3468899999999999988873211 011233459999999999999999999988765433 1 1111100
Q ss_pred cc------------cchHHHHHHHHHHHHHH----------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHH-Hhhc
Q psy6716 154 KW------------YGDSEKLIRLLFLLAKE----------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLC-QMDG 210 (371)
Q Consensus 154 ~~------------~g~~~~~~~~~~~~a~~----------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~-~l~~ 210 (371)
.+ +.........++..+.. ....||+|||++.++.. ....+..++. ....
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEILRWKYVS 225 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHHHHHHhhc
Confidence 00 01122233333444431 23569999999987532 1122333443 2111
Q ss_pred ccccCCCCCCCCEEEEeecC-CCC--------------CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcc
Q psy6716 211 LASVSNEDPNKSVLILAATN-FPW--------------DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKD 273 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn-~~~--------------~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~ 273 (371)
...+.+|++++ .+. .+.+++++ |+ .+|.|++.+.....+.|..++...+....
T Consensus 226 ---------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 226 ---------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred ---------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 11233333333 221 13478876 55 57999999999988888888876432100
Q ss_pred hhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 274 VNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
. ...+.....+..|+....| |++.+++.....+
T Consensus 296 ~-----~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~ 328 (637)
T TIGR00602 296 E-----KIKVPKKTSVELLCQGCSG----DIRSAINSLQFSS 328 (637)
T ss_pred c-----ccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHH
Confidence 0 0001123456677765554 8877777554443
No 225
>PRK08181 transposase; Validated
Probab=99.10 E-value=1.2e-09 Score=98.15 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=74.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHH-HHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSE-KLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~-~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
..+++|+||||||||++|.+++.++ |..+++++..++...+..... ......+... ..+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 3679999999999999999998754 667888888777654321110 1122233322 24679999999876432
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC----------CccHHHHhccc---ceEEecCCCHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW----------DLDEAFRRRLE---KRIYVPIPDQA 255 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~----------~l~~~l~~rf~---~~i~~~~p~~~ 255 (371)
......|+..++.... . -.+|.|||.+- .+..++++|+- ..+.+.-++..
T Consensus 183 -------~~~~~~Lf~lin~R~~------~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 183 -------QAETSVLFELISARYE------R--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred -------HHHHHHHHHHHHHHHh------C--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 2234455666653332 1 14666888761 13356677762 34555554544
No 226
>KOG1514|consensus
Probab=99.09 E-value=8.7e-09 Score=100.47 Aligned_cols=233 Identities=17% Similarity=0.192 Sum_probs=144.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEeccccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSSTLT 152 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~~l~ 152 (371)
.+.+.+.....|..++...+.. ......++++|-||||||.+++.+-..+ ...|++||+-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 4667777777777776332211 0112368999999999999999988754 3468888876665
Q ss_pred cc----------ccch------HHHHHHHHHHHH-HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 153 SK----------WYGD------SEKLIRLLFLLA-KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 153 ~~----------~~g~------~~~~~~~~~~~a-~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
+. +.|+ +-..+..-|... ....++||+|||+|.|+.. -|.-|.+.++....
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr----------~QdVlYn~fdWpt~-- 537 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR----------SQDVLYNIFDWPTL-- 537 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc----------cHHHHHHHhcCCcC--
Confidence 31 1111 111122222211 1224789999999999543 34444454443322
Q ss_pred CCCCCCCEEEEeecCCCCCccHHHH-----hccc-ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 216 NEDPNKSVLILAATNFPWDLDEAFR-----RRLE-KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l~~~l~-----~rf~-~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
++.+++||+.+|..+. ++.++ +|++ ..+.|.+.+..+..+|+...+..... ..+...
T Consensus 538 ---~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-------------f~~~ai 600 (767)
T KOG1514|consen 538 ---KNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-------------FENKAI 600 (767)
T ss_pred ---CCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-------------cchhHH
Confidence 4668899999997643 33333 3553 45788899999999999998876532 233345
Q ss_pred HHHHHHccCCCH--HHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHH
Q psy6716 290 EVLAERLEGYSS--ADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDA 361 (371)
Q Consensus 290 ~~la~~~~g~s~--~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 361 (371)
+-+|+.....|| +....+|++|...+-.+.... .......++..|+.+|++.+..+....-+
T Consensus 601 elvarkVAavSGDaRraldic~RA~Eia~~~~~~~----------k~~~~q~v~~~~v~~Ai~em~~~~~~~~i 664 (767)
T KOG1514|consen 601 ELVARKVAAVSGDARRALDICRRAAEIAEERNVKG----------KLAVSQLVGILHVMEAINEMLASPYIKAL 664 (767)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc----------cccccceeehHHHHHHHHHHhhhhHHHHh
Confidence 566666655554 445577888876666655211 11123468999999999998766543333
No 227
>KOG2680|consensus
Probab=99.09 E-value=1.6e-08 Score=89.25 Aligned_cols=132 Identities=20% Similarity=0.192 Sum_probs=90.8
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC------------CCCccHHHHhc
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF------------PWDLDEAFRRR 242 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~~r 242 (371)
|+||||||++.| .-.-.+-|-+.++.- -.+ ++|.+||+ |..+|-.+++|
T Consensus 289 pGVLFIDEvHML----------DIEcFsFlNrAlE~d--------~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML----------DIECFSFLNRALEND--------MAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDR 349 (454)
T ss_pred cceEEEeeehhh----------hhHHHHHHHHHhhhc--------cCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhh
Confidence 889999999888 334444444445321 123 44555553 36788899999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 243 LEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 243 f~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
. .+|...+.+.++.+.|++..+...... .++..++.|......-+-+---.|+..|...+++|.
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~------------m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--- 413 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVE------------MNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--- 413 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccc------------cCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc---
Confidence 8 778888999999999999999876652 233345566665555555656667777777777765
Q ss_pred CCcccccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 323 NPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
...+..+|+..+++.+-.+
T Consensus 414 --------------~~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 414 --------------GKVVEVDDIERVYRLFLDE 432 (454)
T ss_pred --------------CceeehhHHHHHHHHHhhh
Confidence 2368889999999887543
No 228
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2e-09 Score=99.67 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=89.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC-------------------------CeEEEecccc---cccc-cchHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS-------------------------NFFNITSSTL---TSKW-YGDSEKLI 163 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~-------------------------~~~~v~~~~l---~~~~-~g~~~~~~ 163 (371)
+.++.+||+||+|+|||++|+.+|+.+.+ .|+.+++..- .++. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45578999999999999999999987632 1333332110 0000 00012334
Q ss_pred HHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHH
Q psy6716 164 RLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAF 239 (371)
Q Consensus 164 ~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l 239 (371)
+.+...+... ...|++||+++.| ....++.|+..++... .++.+|.+|+.++.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L----------d~~a~naLLk~LEep~--------~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM----------NLQAANSLLKVLEEPP--------PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC----------CHHHHHHHHHHHHhCc--------CCCEEEEEeCChHhChHHH
Confidence 5555554432 2459999999999 6777888888886543 2456777888888999999
Q ss_pred HhcccceEEecCCCHHHHHHHHH
Q psy6716 240 RRRLEKRIYVPIPDQATRVSLLT 262 (371)
Q Consensus 240 ~~rf~~~i~~~~p~~~er~~il~ 262 (371)
.+|+ ..+.+++|+.++....+.
T Consensus 161 ~SRc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 161 KSRC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHh-hhhcCCCCCHHHHHHHHH
Confidence 9999 678999999988776664
No 229
>KOG1051|consensus
Probab=99.04 E-value=1.4e-09 Score=110.34 Aligned_cols=131 Identities=28% Similarity=0.331 Sum_probs=98.8
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccc-----
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLT----- 152 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~----- 152 (371)
.++||+++...+.+++...- .... .|...++|.||.|+|||-+|+++|..+. -.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSR------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhh------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 48999999999999984321 1122 3677899999999999999999999873 368999998633
Q ss_pred ----ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEE
Q psy6716 153 ----SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLI 225 (371)
Q Consensus 153 ----~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~v 225 (371)
..|+|... ...+.+..++.+.+||+|||||.. ...+++.|+..+|...-+ +....-++++|
T Consensus 637 igsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 637 IGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred cCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc----------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 23444433 335666667777899999999988 778899999999865543 22345679999
Q ss_pred EeecCC
Q psy6716 226 LAATNF 231 (371)
Q Consensus 226 I~ttn~ 231 (371)
|+|+|.
T Consensus 705 IMTsn~ 710 (898)
T KOG1051|consen 705 IMTSNV 710 (898)
T ss_pred EEeccc
Confidence 999875
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.99 E-value=3.2e-09 Score=98.27 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=68.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH---HHHHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS---EKLIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~---~~~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
..+++|+||+|||||+||.++|+++ +..+++++..++...+.... .......+.. .....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCCC
Confidence 3789999999999999999999986 66788888877655432110 0001111222 22457999999976532
Q ss_pred CCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-CC----ccHHHHhcc
Q psy6716 189 HRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-WD----LDEAFRRRL 243 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-~~----l~~~l~~rf 243 (371)
.......|...++..... +-.+|.|||.+ .. +++.+.+|+
T Consensus 261 --------t~~~~~~Lf~iin~R~~~-------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 261 --------TEFSKSELFNLINKRLLR-------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred --------CHHHHHHHHHHHHHHHHC-------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 233345566666544321 12356677764 22 456677776
No 231
>PRK06526 transposase; Provisional
Probab=98.98 E-value=1.9e-09 Score=96.43 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=70.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH-HHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS-EKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
..+++|+||||||||++|.+++.++ |..+..+++.++........ .......+.. ...+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCC--
Confidence 3679999999999999999998764 55666666665544322110 0011112221 23467999999987632
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC-----C-----ccHHHHhccc---ceEEecCCCHHHH
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW-----D-----LDEAFRRRLE---KRIYVPIPDQATR 257 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~-----~-----l~~~l~~rf~---~~i~~~~p~~~er 257 (371)
.......|...++.... .. .+|.|||.+- . +-.++++|+- ..+.+.-++...+
T Consensus 174 ------~~~~~~~L~~li~~r~~------~~--s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R~~ 239 (254)
T PRK06526 174 ------EPEAANLFFQLVSSRYE------RA--SLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLK 239 (254)
T ss_pred ------CHHHHHHHHHHHHHHHh------cC--CEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcchh
Confidence 12223344454543221 11 3677888761 1 2235566652 3455665565544
Q ss_pred H
Q psy6716 258 V 258 (371)
Q Consensus 258 ~ 258 (371)
.
T Consensus 240 ~ 240 (254)
T PRK06526 240 D 240 (254)
T ss_pred h
Confidence 4
No 232
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.98 E-value=6.2e-09 Score=103.18 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=123.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEecccccccccchH--HHHH--------HHHHHHHHHhCCcEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSSTLTSKWYGDS--EKLI--------RLLFLLAKELAPSIVFFDEI 183 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~l~~~~~g~~--~~~~--------~~~~~~a~~~~~~il~lDei 183 (371)
.||+|.|++|||||+++++++..+.. ||+.+..+.-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 58999999999999999999998754 887766554434444432 1111 12233333 689999999
Q ss_pred hhhccCCCCChhhhhhhHHHHHHHhhccccc----C-CCCCCCCEEEEeecCCC---CCccHHHHhcccceEEecCCCHH
Q psy6716 184 DSMCSHRSTSTDVTRRMKSELLCQMDGLASV----S-NEDPNKSVLILAATNFP---WDLDEAFRRRLEKRIYVPIPDQA 255 (371)
Q Consensus 184 d~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~-~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~~i~~~~p~~~ 255 (371)
..+ ...+++.|+..|+..... + ....+.++++|++.|.. ..|++.+++||+..+.++.|+..
T Consensus 103 n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 103 ERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred ccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChH
Confidence 999 788999999999853221 1 11346788889875432 45899999999999999887765
Q ss_pred HHH-------HHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc--cCC-CHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy6716 256 TRV-------SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL--EGY-SSADITIVCRDAAFMNLRRYLNQNPA 325 (371)
Q Consensus 256 er~-------~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~g~-s~~di~~l~~~a~~~~~~~~~~~~~~ 325 (371)
+.. +|....-. ++ ... .++..+..++..+ -|. |.+.-..+++.|...+..+.
T Consensus 173 ~~~~~~~~~~~I~~AR~r-l~----------~v~-v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G------ 234 (584)
T PRK13406 173 DAREIPIDADDIAAARAR-LP----------AVG-PPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG------ 234 (584)
T ss_pred HhcccCCCHHHHHHHHHH-Hc----------cCC-CCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC------
Confidence 432 12111110 00 111 2233344443322 244 66666667776666665543
Q ss_pred ccccCCCcccccccccHHHHHHHHHhC
Q psy6716 326 VAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
...|+.+|+..|+.-+
T Consensus 235 -----------r~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 235 -----------RTAVEEEDLALAARLV 250 (584)
T ss_pred -----------CCCCCHHHHHHHHHHH
Confidence 2378899998888764
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.96 E-value=5.2e-09 Score=92.73 Aligned_cols=69 Identities=26% Similarity=0.294 Sum_probs=48.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH---HHHHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS---EKLIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~---~~~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
.+++|+|+||||||+++.+++.++ +.+++.++..++...+.... ......++.... ...+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 579999999999999999999987 66788888877764332211 111122333322 4679999999876
No 234
>KOG2227|consensus
Probab=98.93 E-value=1.5e-07 Score=88.05 Aligned_cols=239 Identities=18% Similarity=0.182 Sum_probs=140.2
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC----C-CeEEEeccccccc-
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK----S-NFFNITSSTLTSK- 154 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~----~-~~~~v~~~~l~~~- 154 (371)
-..+.|.+..++.+++++..++. ...+.++.+.|.||||||.+...+-.... . ..++++|..+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 34689999999999998854432 24457799999999999998886654432 2 3478888865321
Q ss_pred ---------c----c--chHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy6716 155 ---------W----Y--GDSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNED 218 (371)
Q Consensus 155 ---------~----~--g~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 218 (371)
+ . +........+-....... +-++++||+|.|.... +..|...+. .. ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----------~~vLy~lFe-wp----~l 285 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----------QTVLYTLFE-WP----KL 285 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----------cceeeeehh-cc----cC
Confidence 1 0 111111222222223223 6799999999996432 112222111 11 12
Q ss_pred CCCCEEEEeecCCCCCccHHHHh---c---ccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHH
Q psy6716 219 PNKSVLILAATNFPWDLDEAFRR---R---LEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVL 292 (371)
Q Consensus 219 ~~~~v~vI~ttn~~~~l~~~l~~---r---f~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (371)
+..++++|+.+|..+.-|..|-+ | -+..+.|++++.++..+|+...+...... ...+..++-.
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~-----------~~~~~Aie~~ 354 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS-----------IFLNAAIELC 354 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc-----------ccchHHHHHH
Confidence 45688999999987655544443 2 25689999999999999999998876541 1223456778
Q ss_pred HHHccCCCHHHHH---HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 293 AERLEGYSSADIT---IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 293 a~~~~g~s~~di~---~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
|+...|.|| |++ .+|+.|...+-........ .........+....|..+++..++..+-.+
T Consensus 355 ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~-~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 355 ARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKILD-DPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHhccCch-hHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 888888665 454 4455555444443322110 000000001111345567777777766443
No 235
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.93 E-value=3.3e-08 Score=98.37 Aligned_cols=169 Identities=21% Similarity=0.233 Sum_probs=98.2
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE-ecc---ccccccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI-TSS---TLTSKWY 156 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v-~~~---~l~~~~~ 156 (371)
.|.|.+.+|+.|.-.+.-. ......... .-.-+|||.|.||||||.+.+.+++.+.+.++.- .++ .+.....
T Consensus 287 sIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 5899999999887555211 111111111 1224799999999999999999998887655431 111 1111000
Q ss_pred chHH-H---HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc----cC-CCCCCCCEEEEe
Q psy6716 157 GDSE-K---LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS----VS-NEDPNKSVLILA 227 (371)
Q Consensus 157 g~~~-~---~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~-~~~~~~~v~vI~ 227 (371)
.+.. . .-..++- ...+||++|||+|.| ...-...+...|+...- .+ ...-+.++-|+|
T Consensus 365 rd~~tge~~LeaGALV---lAD~Gv~cIDEfdKm----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 365 RDKVTGEWVLEAGALV---LADGGVCCIDEFDKM----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EccCCCeEEEeCCEEE---EecCCEEEEEeccCC----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 0000 0 0001111 223799999999999 44445556666653211 01 113356778899
Q ss_pred ecCCCC-------------CccHHHHhcccceEEe-cCCCHHHHHHHHHHHHh
Q psy6716 228 ATNFPW-------------DLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 228 ttn~~~-------------~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~ 266 (371)
++|+.. .+++.+++||+..+.+ ..|+.+.=..+..+.+.
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 999873 4678999999887766 45666544555554444
No 236
>KOG0480|consensus
Probab=98.92 E-value=5.2e-08 Score=94.00 Aligned_cols=173 Identities=20% Similarity=0.181 Sum_probs=102.0
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe----cccccccc
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT----SSTLTSKW 155 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~----~~~l~~~~ 155 (371)
+..|.|.+.+|.-|.-.+.--...... .+.. +..-+|+|.|.||+|||-+.++++.-+.+.++.-- .+.+....
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 556899999999887554211110000 0110 22346999999999999999999988877665421 11121111
Q ss_pred cchHHHH----HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-c---CC-CCCCCCEEEE
Q psy6716 156 YGDSEKL----IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-V---SN-EDPNKSVLIL 226 (371)
Q Consensus 156 ~g~~~~~----~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-~---~~-~~~~~~v~vI 226 (371)
+.+.+.. -..++-.| ..+|.+|||+|+| ..+-+..+...|+.-.- . +- ..-+.+.-||
T Consensus 423 vkD~esgdf~iEAGALmLA---DnGICCIDEFDKM----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGALMLA---DNGICCIDEFDKM----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EecCCCCceeeecCcEEEc---cCceEEechhccc----------ChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 1100000 00111122 3789999999999 44445667777653211 0 00 0224566788
Q ss_pred eecCCCC-------------CccHHHHhcccceEE-ecCCCHHHHHHHHHHHHhc
Q psy6716 227 AATNFPW-------------DLDEAFRRRLEKRIY-VPIPDQATRVSLLTIFLQN 267 (371)
Q Consensus 227 ~ttn~~~-------------~l~~~l~~rf~~~i~-~~~p~~~er~~il~~~~~~ 267 (371)
|++|+.. .+++++.+||+..+. +.-|++..-..|-++++..
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 9998762 367899999986543 4778877777777766654
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=2.1e-08 Score=88.70 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=96.4
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEecc-cccc----cc
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNITSS-TLTS----KW 155 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~~~-~l~~----~~ 155 (371)
++|.+...+.|.+.+ .. .+...++|+||+|+|||++++.+...... ..+++++. .... ..
T Consensus 1 F~gR~~el~~l~~~l----------~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 1 FFGREKELEKLKELL----------ES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-S-HHHHHHHHHCH----------HH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----------Hh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 356677777777666 21 23467999999999999999999988733 11122111 0000 00
Q ss_pred ------------------------------cchHHHHHHHHHHHHHHh-CCcEEEeccchhhc-cCCCCChhhhhhhHHH
Q psy6716 156 ------------------------------YGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMC-SHRSTSTDVTRRMKSE 203 (371)
Q Consensus 156 ------------------------------~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~-~~~~~~~~~~~~~~~~ 203 (371)
.......+..++...... ...+|+|||++.+. ... . ...+...
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-~----~~~~~~~ 143 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-E----DKDFLKS 143 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-T----THHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-c----hHHHHHH
Confidence 011223344455554443 24899999999996 211 1 2344445
Q ss_pred HHHHhhcccccCCCCCCCCEEEEeecCCCCCc------cHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhh
Q psy6716 204 LLCQMDGLASVSNEDPNKSVLILAATNFPWDL------DEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIE 277 (371)
Q Consensus 204 ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l------~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~ 277 (371)
|...++.... ..++.+|.++...... ...+..|+.. +.+++.+.++..+++...+... ....
T Consensus 144 l~~~~~~~~~------~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~---- 211 (234)
T PF01637_consen 144 LRSLLDSLLS------QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLP---- 211 (234)
T ss_dssp HHHHHHH----------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC---------
T ss_pred HHHHHhhccc------cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hccc----
Confidence 5555544222 2244444443322111 1234457755 9999999999999999988765 3100
Q ss_pred hhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 278 VLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 278 ~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
.++.+++.+...+.| .|+-|.
T Consensus 212 ------~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 212 ------FSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp --------HHHHHHHHHHHTT--HHHHH
T ss_pred ------CCHHHHHHHHHHhCC-CHHHHh
Confidence 256678888888887 565554
No 238
>PF13173 AAA_14: AAA domain
Probab=98.85 E-value=1.7e-08 Score=80.82 Aligned_cols=118 Identities=23% Similarity=0.257 Sum_probs=68.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC--CCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK--SNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS 193 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~--~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~ 193 (371)
+.++|+||+|+|||++++.+++... ..++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 78888888765432111110 1122222211256899999999881
Q ss_pred hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc----cHHHHhcccceEEecCCCHHH
Q psy6716 194 TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL----DEAFRRRLEKRIYVPIPDQAT 256 (371)
Q Consensus 194 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l----~~~l~~rf~~~i~~~~p~~~e 256 (371)
.+...+-...+.. .++.||.|+.....+ ...+..|. ..+.+.+.+..|
T Consensus 75 -----~~~~~lk~l~d~~---------~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -----DWEDALKFLVDNG---------PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred -----cHHHHHHHHHHhc---------cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 2222222223211 133455454443333 23344466 467888877765
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.81 E-value=4.6e-08 Score=87.56 Aligned_cols=71 Identities=31% Similarity=0.383 Sum_probs=50.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHHH--HHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSEK--LIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~--~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
...+++|+||||+|||+||-|+++++ |.+++.+..+++.......... ....+..... ...+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 34789999999999999999999876 6788888888887654332221 1111222122 3569999999775
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.81 E-value=3.1e-09 Score=90.00 Aligned_cols=100 Identities=24% Similarity=0.273 Sum_probs=57.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH-HHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS-EKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
..+++|+||+|||||++|.++++++ +.++..++.+++...+.... .......+.... ...+|+|||+.....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~-- 122 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL-- 122 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee--
Confidence 4689999999999999999998764 77888888888764432110 001112233322 467999999964421
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
.......|...++.... . . .+|.|||..
T Consensus 123 ------~~~~~~~l~~ii~~R~~------~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 123 ------SEWEAELLFEIIDERYE------R-K-PTIITSNLS 150 (178)
T ss_dssp -------HHHHHCTHHHHHHHHH------T---EEEEEESS-
T ss_pred ------cccccccchhhhhHhhc------c-c-CeEeeCCCc
Confidence 12233444555554332 1 2 355688865
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8e-08 Score=86.73 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=81.8
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC----------------eEEEecccccccccchHHHHHHHHHHHHHHhC--
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN----------------FFNITSSTLTSKWYGDSEKLIRLLFLLAKELA-- 174 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-- 174 (371)
..++.+||+||+|+||+.+|.++|+.+-+. ++.+.+.. .+.. -.-..++.+...+...+
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 445789999999999999999999876431 11111110 0000 01223444444443322
Q ss_pred --CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCC
Q psy6716 175 --PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 175 --~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p 252 (371)
.-|++||++|.| .....+.||..|+. ++.++++|..|+.++.+.+.+++|+ ..+.++++
T Consensus 94 ~~~kv~ii~~ad~m----------t~~AaNaLLK~LEE--------Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM----------TLDAISAFLKVLED--------PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhc----------CHHHHHHHHHHhhc--------CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 359999999999 77888999999964 4568888999999999999999999 55777654
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.80 E-value=2.2e-08 Score=90.30 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=44.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
..+++|+||||+|||+|+.++++++ +..+++++..++........ ......+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4679999999999999999999875 55677777665543321111 111111122 22467999999944
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.79 E-value=5e-08 Score=87.74 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=60.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecccccccccchH-HHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKWYGDS-EKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
..+++|+||||||||++|.+++.. .|..+..+++.++...+.... ...+...+... ...+.+|+|||++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~- 179 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFS- 179 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCC-
Confidence 357999999999999999999765 366777777766653322110 11122333322 234679999999875321
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
......|+..++.... .. .+|.|||.+
T Consensus 180 -------~~~~~~lf~li~~r~~------~~--s~iiTsn~~ 206 (259)
T PRK09183 180 -------QEEANLFFQVIAKRYE------KG--SMILTSNLP 206 (259)
T ss_pred -------hHHHHHHHHHHHHHHh------cC--cEEEecCCC
Confidence 2223345555554332 11 256688875
No 244
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=8.3e-09 Score=90.94 Aligned_cols=135 Identities=20% Similarity=0.277 Sum_probs=83.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHH------HcCCCeEEEecccccccc-----cchHH----HHHHHHHHHHHHhCCcEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT------ETKSNFFNITSSTLTSKW-----YGDSE----KLIRLLFLLAKELAPSIVFF 180 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~------~~~~~~~~v~~~~l~~~~-----~g~~~----~~~~~~~~~a~~~~~~il~l 180 (371)
.++||.||+|.||+++|+.|.. .+..+|++|+|..+.+.. +|... .....--...+...+++|||
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4699999999999999999864 356799999999886532 22111 11111112223335899999
Q ss_pred ccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEEeecCCC-------CCccHHHHhcccceEEec
Q psy6716 181 DEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLILAATNFP-------WDLDEAFRRRLEKRIYVP 250 (371)
Q Consensus 181 Deid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~ 250 (371)
|||..|. ..-+..|+..++..... +++....+.-+|+-|.+. ....+.+..|+ ..+.+.
T Consensus 289 deigelg----------adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~ 357 (531)
T COG4650 289 DEIGELG----------ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFT 357 (531)
T ss_pred HhhhhcC----------ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeee
Confidence 9999983 34466777777643321 222333455556555432 12334455566 557888
Q ss_pred CCCHHHHHHHH
Q psy6716 251 IPDQATRVSLL 261 (371)
Q Consensus 251 ~p~~~er~~il 261 (371)
+|...+|.+-+
T Consensus 358 lpgl~qr~edi 368 (531)
T COG4650 358 LPGLRQRQEDI 368 (531)
T ss_pred ccccccCcccc
Confidence 88888877643
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.76 E-value=8.3e-09 Score=96.16 Aligned_cols=168 Identities=24% Similarity=0.281 Sum_probs=89.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc-----cc-----
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST-----LT----- 152 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~-----l~----- 152 (371)
.|.|.+.+|..+.-.+.-.......-....+..-++||.|.||||||.+.+++++...+.++. +... +.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~-~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYT-SGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEE-ECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEE-CCCCcccCCccceecc
Confidence 588989888876533321111000000000223579999999999999999988766555433 2111 11
Q ss_pred ----ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-C--C--CCCCCCE
Q psy6716 153 ----SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-S--N--EDPNKSV 223 (371)
Q Consensus 153 ----~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~--~--~~~~~~v 223 (371)
+.|.-+. ..+-.| .++|++|||+|.+ .......|...|+.-.-. . + ..-+.++
T Consensus 104 d~~~~~~~lea-----Galvla---d~GiccIDe~dk~----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 104 DPVTGEWVLEA-----GALVLA---DGGICCIDEFDKM----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGGTSSECEEE------HHHHC---TTSEEEECTTTT------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred ccccceeEEeC-----Cchhcc---cCceeeecccccc----------cchHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 1111111 122223 4799999999999 455577788888742211 0 0 0124578
Q ss_pred EEEeecCCCC-------------CccHHHHhcccceEEe-cCCCHHHHHHHHHHHHhcCC
Q psy6716 224 LILAATNFPW-------------DLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQNVK 269 (371)
Q Consensus 224 ~vI~ttn~~~-------------~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~~~~ 269 (371)
-|+|++|+.. .+++.+++||+.++.+ ..|+.+.-..+.++.+....
T Consensus 166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 8999999774 3678999999987765 66777666677777776543
No 246
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=7e-07 Score=80.96 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC-------eEEE-ecccc-----cc
Q psy6716 87 LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN-------FFNI-TSSTL-----TS 153 (371)
Q Consensus 87 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-------~~~v-~~~~l-----~~ 153 (371)
+..+++.+...+ . .+..++.+||+|| +||+.+|+.+|..+-+. +-.+ +|..+ +.
T Consensus 7 q~~~~~~L~~~~----------~-~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTIL----------E-QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHH----------H-cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455566666665 2 2345578999996 68999999999865321 1000 00000 00
Q ss_pred c-cc---c--hHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCE
Q psy6716 154 K-WY---G--DSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV 223 (371)
Q Consensus 154 ~-~~---g--~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v 223 (371)
- ++ | -....++.+...+... ...|++||++|.| .....+.||..|+. ++.++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m----------~~~AaNaLLKtLEE--------Pp~~t 135 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM----------HVNAANSLLKVIEE--------PQSEI 135 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc----------CHHHHHHHHHHhcC--------CCCCe
Confidence 0 00 1 0123344444444332 2359999999999 67778899999854 45578
Q ss_pred EEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHH
Q psy6716 224 LILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLL 261 (371)
Q Consensus 224 ~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il 261 (371)
++|.+|+.++.+.+.++||+ ..+.|+. +.++..+++
T Consensus 136 ~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred EEEEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 88889999999999999999 6688865 444433333
No 247
>KOG0478|consensus
Probab=98.75 E-value=1.3e-07 Score=91.95 Aligned_cols=171 Identities=22% Similarity=0.194 Sum_probs=95.9
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE-ecccccc--ccc-
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI-TSSTLTS--KWY- 156 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v-~~~~l~~--~~~- 156 (371)
.|.|++++|+.|.-.+ .-.....+...+ ...-+|||+|.||||||.+.+++++.+.+-.+.= ..+.-.+ .++
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4789999999887554 222222222222 2235799999999999999999999876544321 0000000 000
Q ss_pred --chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-c---CC-CCCCCCEEEEeec
Q psy6716 157 --GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-V---SN-EDPNKSVLILAAT 229 (371)
Q Consensus 157 --g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-~---~~-~~~~~~v~vI~tt 229 (371)
+++.+.+-. -...-....++.+|||+|+| .....+-|...|+.-.- . +- ..-+.+.-|+|++
T Consensus 508 rd~dtkqlVLe-sGALVLSD~GiCCIDEFDKM----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 508 KDPDTRQLVLE-SGALVLSDNGICCIDEFDKM----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred ecCccceeeee-cCcEEEcCCceEEchhhhhh----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 000000000 00001224789999999999 33444455555542110 0 00 1235577899999
Q ss_pred CCCC-------------CccHHHHhcccceEEe-cCCCHHHHHHHHHHHHh
Q psy6716 230 NFPW-------------DLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQ 266 (371)
Q Consensus 230 n~~~-------------~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~ 266 (371)
|+.. .|++.|++||+.++-+ ..||+..-+.+..++..
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 9551 4789999999875543 67777644444444443
No 248
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.73 E-value=4.3e-07 Score=79.95 Aligned_cols=134 Identities=20% Similarity=0.223 Sum_probs=75.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
.+-.+.||+|||||.+++.+|+.+|++++.++|++..+ ...+..++.=+.+ .++.+++||++.|
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl--------- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRL--------- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCS---------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhh---------
Confidence 55678999999999999999999999999999998543 2334444433333 2789999999999
Q ss_pred hhhhhHHHHHHHhhc----ccc-------cCC-CCCCCCEEEEeecCCC----CCccHHHHhcccceEEecCCCHHHHHH
Q psy6716 196 VTRRMKSELLCQMDG----LAS-------VSN-EDPNKSVLILAATNFP----WDLDEAFRRRLEKRIYVPIPDQATRVS 259 (371)
Q Consensus 196 ~~~~~~~~ll~~l~~----~~~-------~~~-~~~~~~v~vI~ttn~~----~~l~~~l~~rf~~~i~~~~p~~~er~~ 259 (371)
...+++.+...+.. +.. .+. ..-+.++-++.|.|.. ..+|+.++.-| +.+.+..||.....+
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHH
Confidence 22222222222211 111 010 0123345566677643 46888998888 778999999875444
Q ss_pred HHHHHHhcCCC
Q psy6716 260 LLTIFLQNVKV 270 (371)
Q Consensus 260 il~~~~~~~~~ 270 (371)
.++-..++
T Consensus 175 ---i~L~s~GF 182 (231)
T PF12774_consen 175 ---ILLLSQGF 182 (231)
T ss_dssp ---HHHHCCCT
T ss_pred ---HHHHHcCc
Confidence 44444444
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.67 E-value=9.3e-08 Score=87.88 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=48.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHH-HHHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSE-KLIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~-~~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
...+++|+||+|||||+|+.++|+++ +.++..+..+++...+..... ......+.... ...+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 34789999999999999999999987 677777877776544322111 11122233322 4679999999654
No 250
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=8.9e-07 Score=86.80 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=106.2
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE-eccccc------
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI-TSSTLT------ 152 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v-~~~~l~------ 152 (371)
+.+++.-...-.+.++.++... +.. ..+.+-+||+||+|||||++++.+|++++..+.+- ++..+.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~------~~~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~ 89 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEM------FSG-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQE 89 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHH------hcc-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccccc
Confidence 4556666666666666666211 111 12234578899999999999999999998876653 222210
Q ss_pred ccccch---H---HH---HHHHH-HHHHHH-----------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcc
Q psy6716 153 SKWYGD---S---EK---LIRLL-FLLAKE-----------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL 211 (371)
Q Consensus 153 ~~~~g~---~---~~---~~~~~-~~~a~~-----------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 211 (371)
..+.+. . .. ..... +..++. ..+.||+|+|+-.++... ...+...|...+..
T Consensus 90 ~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~~~f~~~L~~~l~~- 162 (519)
T PF03215_consen 90 DDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------TSRFREALRQYLRS- 162 (519)
T ss_pred ccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------HHHHHHHHHHHHHc-
Confidence 011110 0 00 01111 111111 135699999997653321 23333333333321
Q ss_pred cccCCCCCCC-CEEEEee-cC------CC--------CCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcc
Q psy6716 212 ASVSNEDPNK-SVLILAA-TN------FP--------WDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKD 273 (371)
Q Consensus 212 ~~~~~~~~~~-~v~vI~t-tn------~~--------~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~ 273 (371)
+ .. ++++|.| +. .. ..+++.++. ++ ..|.|.+-...-...-|...+....-.
T Consensus 163 ---~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~-- 232 (519)
T PF03215_consen 163 ---S----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARS-- 232 (519)
T ss_pred ---C----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhh--
Confidence 1 12 6666666 11 11 135677766 34 667886666655555566555543100
Q ss_pred hhhhhhcccCCCcc-cHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy6716 274 VNIEVLNVKVDKDV-NIEVLAERLEGYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~la~~~~g~s~~di~~l~~~a~~~~~ 316 (371)
........... .++.|+..+.| ||+..++.-...+.
T Consensus 233 ---~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 233 ---SSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred ---hcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 00000111112 26677766555 99999887776666
No 251
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.2e-06 Score=80.14 Aligned_cols=127 Identities=14% Similarity=0.037 Sum_probs=87.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC-----------C--eEEEecccccccccchHHHHHHHHHHHHHHh-----C
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS-----------N--FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL-----A 174 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----------~--~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~ 174 (371)
..++..||+|+.|.||+.+|+.+++.+-+ | ++.++.. +... ....++.+.+..... .
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCC
Confidence 34467889999999999999999988622 1 2222210 0101 112333333333222 3
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCH
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQ 254 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~ 254 (371)
.-|++||++|.+ .....+.|+..|+. ++..+++|.+|+.+..+-+.+++|+ ..+.+++|+.
T Consensus 91 ~KvvII~~~e~m----------~~~a~NaLLK~LEE--------Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT----------SNSLLNALLKTIEE--------PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc----------CHHHHHHHHHHhhC--------CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCH
Confidence 469999999998 66678889998865 3557777777778889999999999 7799999988
Q ss_pred HHHHHHHHH
Q psy6716 255 ATRVSLLTI 263 (371)
Q Consensus 255 ~er~~il~~ 263 (371)
++....+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877665543
No 252
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.63 E-value=1.1e-07 Score=86.13 Aligned_cols=141 Identities=22% Similarity=0.313 Sum_probs=78.2
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC-C--eEEEecccccccccchHHHHHHHHHHHH-HH----------hCCcEEEe
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS-N--FFNITSSTLTSKWYGDSEKLIRLLFLLA-KE----------LAPSIVFF 180 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~-~--~~~v~~~~l~~~~~g~~~~~~~~~~~~a-~~----------~~~~il~l 180 (371)
..++||+||+|||||++++..-..+.. . ...++++... ....+....+.. .+ ....|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 367999999999999999887765543 2 2234443321 111111111100 00 01359999
Q ss_pred ccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCC-----CCCCCEEEEeecCCCC---CccHHHHhcccceEEecCC
Q psy6716 181 DEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNE-----DPNKSVLILAATNFPW---DLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 181 Deid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-----~~~~~v~vI~ttn~~~---~l~~~l~~rf~~~i~~~~p 252 (371)
||++.-.++..+.. ... +|++++-......+. ..-.++.+||+++... .+++.+.|.| .++.++.|
T Consensus 107 DDlN~p~~d~ygtq----~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p 180 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQ----PPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYP 180 (272)
T ss_dssp ETTT-S---TTS------HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----
T ss_pred cccCCCCCCCCCCc----CHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCC
Confidence 99987655443321 122 455443222111111 1234788899988642 4788898888 78999999
Q ss_pred CHHHHHHHHHHHHhc
Q psy6716 253 DQATRVSLLTIFLQN 267 (371)
Q Consensus 253 ~~~er~~il~~~~~~ 267 (371)
+.+....|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999999888864
No 253
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=4.2e-07 Score=80.40 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=79.5
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC-----eEEE-ecc--------cccccccc---hHHHHHHHHHHHHHH---
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN-----FFNI-TSS--------TLTSKWYG---DSEKLIRLLFLLAKE--- 172 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-----~~~v-~~~--------~l~~~~~g---~~~~~~~~~~~~a~~--- 172 (371)
.+++.+||+||+|+||..+|.++|+.+-+. +-.+ +|. ++.--+.. -....++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999875321 0000 000 10000000 011222333222221
Q ss_pred --hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEec
Q psy6716 173 --LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVP 250 (371)
Q Consensus 173 --~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~ 250 (371)
...-|++|+++|.| .....+.||..+++ ++.++++|.+|+.++.+.+.+++|+ ..+.++
T Consensus 85 e~~~~KV~II~~ae~m----------~~~AaNaLLK~LEE--------Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL----------NKQSANSLLKLIEE--------PPKNTYGIFTTRNENNILNTILSRC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh----------CHHHHHHHHHhhcC--------CCCCeEEEEEECChHhCchHhhhhe-eeeecC
Confidence 12469999999999 77788999999854 4668899999999999999999999 456776
Q ss_pred CC
Q psy6716 251 IP 252 (371)
Q Consensus 251 ~p 252 (371)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 254
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=3.4e-07 Score=73.36 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=47.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc--------CCCeEEEeccccccc--c------------c--chHHHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET--------KSNFFNITSSTLTSK--W------------Y--GDSEKLIRLLFLLAK 171 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~--------~~~~~~v~~~~l~~~--~------------~--g~~~~~~~~~~~~a~ 171 (371)
..++++||+|+|||++++.++... ..+++.+++...... + . .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 568999999999999999999987 677888877654310 0 0 122333444444555
Q ss_pred HhCCcEEEeccchhhc
Q psy6716 172 ELAPSIVFFDEIDSMC 187 (371)
Q Consensus 172 ~~~~~il~lDeid~l~ 187 (371)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5444599999999984
No 255
>PF05729 NACHT: NACHT domain
Probab=98.57 E-value=1.3e-06 Score=72.79 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=75.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCC--------C-eEEEeccccccccc------------chHHHHHHH-HHHHHHHhC
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKS--------N-FFNITSSTLTSKWY------------GDSEKLIRL-LFLLAKELA 174 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~--------~-~~~v~~~~l~~~~~------------g~~~~~~~~-~~~~a~~~~ 174 (371)
-++|+|+||+|||++++.++..+.. + ++.+.+........ ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999876421 1 22333333322100 000111111 122233445
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhccc--ceEEecCC
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLE--KRIYVPIP 252 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~--~~i~~~~p 252 (371)
..+|+||.+|.+....... ........+...+... ...++.++.|++. ..... +.+.+. ..+.++..
T Consensus 82 ~~llilDglDE~~~~~~~~--~~~~~~~~l~~l~~~~-------~~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQ--ERQRLLDLLSQLLPQA-------LPPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhhh--HHHHHHHHHHHHhhhc-------cCCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCC
Confidence 6799999999996532220 1112222222333220 1224455555543 22222 444332 46889999
Q ss_pred CHHHHHHHHHHHHhc
Q psy6716 253 DQATRVSLLTIFLQN 267 (371)
Q Consensus 253 ~~~er~~il~~~~~~ 267 (371)
+.+++..+++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998864
No 256
>KOG0482|consensus
Probab=98.56 E-value=4.4e-07 Score=85.52 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=128.6
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhh--hcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFD--KLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDS 159 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~--~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~ 159 (371)
+|.|..++|+.|.-.+.-- .+... ++. .-.-+|+|.|.||+.||-|.+++.+-..+..+.---.. .-+|-+
T Consensus 343 EIyGheDVKKaLLLlLVGg---vd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGG---VDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCC---CCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 5899999999988665221 11111 011 22346999999999999999999988766655431110 001111
Q ss_pred HHHHH-----------HHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHH----hh--cccccCCCCCCCC
Q psy6716 160 EKLIR-----------LLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQ----MD--GLASVSNEDPNKS 222 (371)
Q Consensus 160 ~~~~~-----------~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~----l~--~~~~~~~~~~~~~ 222 (371)
....+ .++-.| ..+|.+|||+|+|...... .+.+...+ +. ++. ..-+.+
T Consensus 417 AAVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~DRt-------AIHEVMEQQTISIaKAGI~----TtLNAR 482 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDESDRT-------AIHEVMEQQTISIAKAGIN----TTLNAR 482 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhhhhH-------HHHHHHHhhhhhhhhhccc----cchhhh
Confidence 11000 011122 3789999999999543221 11111111 10 111 123556
Q ss_pred EEEEeecCCCC-------------CccHHHHhcccceEEe-cCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc-
Q psy6716 223 VLILAATNFPW-------------DLDEAFRRRLEKRIYV-PIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV- 287 (371)
Q Consensus 223 v~vI~ttn~~~-------------~l~~~l~~rf~~~i~~-~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (371)
+-|+|++|+.+ .|+.+|++||+..+-+ ..|+.+.-..+.++..--......-.....+ +..+.
T Consensus 483 ~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fep--l~~~~m 560 (721)
T KOG0482|consen 483 TSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEP--LDPNLM 560 (721)
T ss_pred HHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCC--CCHHHH
Confidence 77889988662 4789999999876655 6787776666666655321110000000000 01111
Q ss_pred -cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccc--c----------CCCcccccccccHHHHHHHHHhCC
Q psy6716 288 -NIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAM--K----------DIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 288 -~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
.+-.+|++-.-+.+.++..-+-.|.....++..++.+.... + ....-.+...+..+|+++|++-+.
T Consensus 561 R~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 561 RRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 11233444445566666666665554444443222111100 0 000011134678899999998763
No 257
>KOG2228|consensus
Probab=98.48 E-value=6.4e-06 Score=74.39 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=96.0
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHH-H--HcCCCeEEEecccccc------
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAA-T--ETKSNFFNITSSTLTS------ 153 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la-~--~~~~~~~~v~~~~l~~------ 153 (371)
.+.|..+..+.+.+++... -.....+.|++.||.|+|||++....- . +.+.+++.|.......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt--------~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQT--------ILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHH--------HHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 4678777777777776210 011234779999999999998876543 2 5666776664433221
Q ss_pred ---------------cccchHHHHHHHHHHHHHHh----C-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc
Q psy6716 154 ---------------KWYGDSEKLIRLLFLLAKEL----A-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 154 ---------------~~~g~~~~~~~~~~~~a~~~----~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 213 (371)
+.+|.....+..+....+.. + +.|.++||||..++. .-|.-|.+.+|-...
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h---------~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH---------SRQTLLYNLFDISQS 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc---------hhhHHHHHHHHHHhh
Confidence 11233333333333333322 1 235557799998653 122234444443322
Q ss_pred cCCCCCCCCEEEEeecCCCCC---ccHHHHhcccce-EEec-CCCHHHHHHHHHHHHh
Q psy6716 214 VSNEDPNKSVLILAATNFPWD---LDEAFRRRLEKR-IYVP-IPDQATRVSLLTIFLQ 266 (371)
Q Consensus 214 ~~~~~~~~~v~vI~ttn~~~~---l~~~l~~rf~~~-i~~~-~p~~~er~~il~~~~~ 266 (371)
...++.||+.|.+-+- |...+.+||... |+++ ..+..+..++++..+.
T Consensus 168 -----~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 168 -----ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred -----cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 2457888888887654 456777799654 6664 4478888889888874
No 258
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=1.5e-05 Score=86.53 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhhhccC---CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHH
Q psy6716 61 EKKLARNILSEVLKAE---TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 61 ~~~~~~~~~~~~~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+.++.+.+..++.... +...+++++|++..++.+...+... ....+-+-|+|++|+||||+|+++++
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHH
Confidence 3444555555554332 3345678999999999998877321 12235688999999999999999988
Q ss_pred HcCCCe---EEEeccccc---cccc-------c----hHHHHHHH-------------HHHHHHHhCCcEEEeccchhhc
Q psy6716 138 ETKSNF---FNITSSTLT---SKWY-------G----DSEKLIRL-------------LFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 138 ~~~~~~---~~v~~~~l~---~~~~-------g----~~~~~~~~-------------~~~~a~~~~~~il~lDeid~l~ 187 (371)
.....| +.++...+. ..+. . -....+.. ..+..-...+.+|+||+++..
T Consensus 230 ~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~- 308 (1153)
T PLN03210 230 RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ- 308 (1153)
T ss_pred HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-
Confidence 764432 112110000 0000 0 00000000 111111234678999998643
Q ss_pred cCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHH
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
.....+....+.. ..+..||.||+.. .+.+ ..+..+.++.|+.++..+++..++
T Consensus 309 -----------~~l~~L~~~~~~~--------~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 309 -----------DVLDALAGQTQWF--------GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred -----------HHHHHHHhhCccC--------CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHh
Confidence 2222332222111 1133566677642 3332 356788999999999999998877
Q ss_pred hc
Q psy6716 266 QN 267 (371)
Q Consensus 266 ~~ 267 (371)
.+
T Consensus 365 f~ 366 (1153)
T PLN03210 365 FK 366 (1153)
T ss_pred cC
Confidence 54
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.45 E-value=7.5e-06 Score=74.96 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH--cCCC---eEEEeccccccc-------------c------cchHHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE--TKSN---FFNITSSTLTSK-------------W------YGDSEKLIRLLFL 168 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~--~~~~---~~~v~~~~l~~~-------------~------~g~~~~~~~~~~~ 168 (371)
.....|.|+|++|+|||++|+.+++. .... ++.++.+.-... . ..........+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34467899999999999999999977 3332 233333321110 0 0112222233333
Q ss_pred HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEE
Q psy6716 169 LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIY 248 (371)
Q Consensus 169 ~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 248 (371)
. -...+++|+||+++.. . ....+...+... ..+..||.||.... +....... ...+.
T Consensus 97 ~-L~~~~~LlVlDdv~~~----------~--~~~~l~~~~~~~--------~~~~kilvTTR~~~-v~~~~~~~-~~~~~ 153 (287)
T PF00931_consen 97 L-LKDKRCLLVLDDVWDE----------E--DLEELREPLPSF--------SSGSKILVTTRDRS-VAGSLGGT-DKVIE 153 (287)
T ss_dssp H-HCCTSEEEEEEEE-SH----------H--HH-------HCH--------HSS-EEEEEESCGG-GGTTHHSC-EEEEE
T ss_pred h-hccccceeeeeeeccc----------c--cccccccccccc--------cccccccccccccc-cccccccc-ccccc
Confidence 2 2334899999999765 1 122222222111 12346666776532 22222111 36789
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 249 VPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 249 ~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
++..+.++-.+++........... .-..+.....+++.+.| .|-.|..+..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~---------~~~~~~~~~~i~~~c~g-lPLal~~~a~ 204 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESES---------PEDLEDLAKEIVEKCGG-LPLALKLIAS 204 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-------------TTSCTHHHHHHHHTTT--HHHHHHHHH
T ss_pred cccccccccccccccccccccccc---------ccccccccccccccccc-cccccccccc
Confidence 999999999999998876433000 00123346688888876 6777766654
No 260
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.45 E-value=1.8e-05 Score=69.06 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=105.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCC---eEEEeccccccc-----cc----c--------hHHHHHHHHHHHHHHh-CC
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSN---FFNITSSTLTSK-----WY----G--------DSEKLIRLLFLLAKEL-AP 175 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~---~~~v~~~~l~~~-----~~----g--------~~~~~~~~~~~~a~~~-~~ 175 (371)
-+.++|+-|||||+++|++...+... .+.++...+... ++ . ..+..-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 47799999999999999776665432 234443322211 00 1 1112222233333333 36
Q ss_pred cEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCcc----HHHHhcccceEEecC
Q psy6716 176 SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD----EAFRRRLEKRIYVPI 251 (371)
Q Consensus 176 ~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~----~~l~~rf~~~i~~~~ 251 (371)
.++++||.+.+.. .....|....+ ....+ ...-.+++++=..--..+- ..+..|++..+++++
T Consensus 133 v~l~vdEah~L~~----------~~le~Lrll~n-l~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLND----------SALEALRLLTN-LEEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhCh----------hHHHHHHHHHh-hcccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 8999999999832 22322222221 11111 0122344443322111111 123338866688899
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 252 PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 252 p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
.+.++-...+++.+...+.+ ..+.++..+..++..+.| .|+.|.++|..|...+....
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~---------~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~ 257 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLP---------EPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAG 257 (269)
T ss_pred cChHHHHHHHHHHHhccCCC---------cccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcC
Confidence 99999999999999877553 233556667888889998 78899999999887777643
No 261
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=91.33 Aligned_cols=141 Identities=22% Similarity=0.184 Sum_probs=98.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc------cc-ccch--HHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT------SK-WYGD--SEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~------~~-~~g~--~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
.+++||.|.||+|||++..++|+..|-.+++|+.++-. +. ..++ .+-.++..--.+....++.++|||+.-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 46799999999999999999999999999999887532 11 1111 111222222233344588999999976
Q ss_pred hccCCCCChhhhhhhHHHHHHHhhcccccC-----CC-CCCCCEEEEeecCCC------CCccHHHHhcccceEEecCCC
Q psy6716 186 MCSHRSTSTDVTRRMKSELLCQMDGLASVS-----NE-DPNKSVLILAATNFP------WDLDEAFRRRLEKRIYVPIPD 253 (371)
Q Consensus 186 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~-~~~~~v~vI~ttn~~------~~l~~~l~~rf~~~i~~~~p~ 253 (371)
. +..++.-|-.++|...... .. .-..+.+|+|+-|+. ..||..++.|| .++++...+
T Consensus 1623 a----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt 1691 (4600)
T COG5271 1623 A----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLT 1691 (4600)
T ss_pred h----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccc
Confidence 6 5667777777777432211 00 124577888888865 36899999999 778888888
Q ss_pred HHHHHHHHHHHHh
Q psy6716 254 QATRVSLLTIFLQ 266 (371)
Q Consensus 254 ~~er~~il~~~~~ 266 (371)
.+....|..+...
T Consensus 1692 ~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1692 TDDITHIANKMYP 1704 (4600)
T ss_pred cchHHHHHHhhCC
Confidence 8887777776654
No 262
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.40 E-value=2.1e-06 Score=71.28 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=47.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc------------------------cchHHHHHHHHHHHH
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW------------------------YGDSEKLIRLLFLLA 170 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~------------------------~g~~~~~~~~~~~~a 170 (371)
++|+||||+|||+++..++... +.+++.+++....... ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4566666654332110 001111122334555
Q ss_pred HHhCCcEEEeccchhhccC
Q psy6716 171 KELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 171 ~~~~~~il~lDeid~l~~~ 189 (371)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667889999999988643
No 263
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.37 E-value=1.1e-06 Score=82.49 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC-CeEEEecccccccccch------HHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS-NFFNITSSTLTSKWYGD------SEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~-~~~~v~~~~l~~~~~g~------~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
.+++|++||||+|+|||+|.-.....+.. .-.++....++...... ....+..+.+.... ...+|++||++-
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V 138 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQV 138 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeec
Confidence 46799999999999999999999887754 22222222222211110 00111222222211 234999999975
Q ss_pred hccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 186 MCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 186 l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
- +-....++..|+..+- ..++++|+|+|.+
T Consensus 139 ~-------DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T-------DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred c-------chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 3 1223456666766651 3478999999987
No 264
>KOG2170|consensus
Probab=98.36 E-value=3.3e-06 Score=75.09 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=75.8
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCc--cEEEEcCCCchHHHHHHHHHHHcCC-----CeEE--Eeccccccc
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWK--GVLLVGPPGTGKTMLAKAAATETKS-----NFFN--ITSSTLTSK 154 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~--~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~--v~~~~l~~~ 154 (371)
+.|+.-+++.+...+.-.. ....|.+ .+=|+|++||||.++++.||+.+.. +++. +....++..
T Consensus 84 lfGQHla~~~Vv~alk~~~-------~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHW-------ANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHh-------cCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6788888887777762211 1122333 3558899999999999999997633 2222 111112111
Q ss_pred -ccc-hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 155 -WYG-DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 155 -~~g-~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
.+. ...+....+...++.++.++.++||+|.| +..++..+--.+|......+ ....+.++|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm----------p~gLld~lkpfLdyyp~v~g-v~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL----------PPGLLDVLKPFLDYYPQVSG-VDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc----------CHhHHHHHhhhhcccccccc-ccccceEEEEEcCCc
Confidence 111 12233445556667777899999999999 55555555555554332222 223455666666654
No 265
>KOG1970|consensus
Probab=98.34 E-value=4.3e-05 Score=73.30 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=89.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe-------ccccccccc------chHHHHHHHHHHHHHH----------
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT-------SSTLTSKWY------GDSEKLIRLLFLLAKE---------- 172 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~-------~~~l~~~~~------g~~~~~~~~~~~~a~~---------- 172 (371)
+-+||+||+|||||++++.++.++|..+++-. ...+..... ...-.........+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 45889999999999999999999998776633 111111101 1111111112222211
Q ss_pred --hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC--CCccH------HHHh-
Q psy6716 173 --LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP--WDLDE------AFRR- 241 (371)
Q Consensus 173 --~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~--~~l~~------~l~~- 241 (371)
..+.+|++||+-..+... ..+.+...|..+-... ..+ +|++.|+.. +..++ .+.-
T Consensus 191 ~~~~~~liLveDLPn~~~~d------~~~~f~evL~~y~s~g-------~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~ 256 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD------DSETFREVLRLYVSIG-------RCP-LIFIITDSLSNGNNNQDRLFPKDIQEE 256 (634)
T ss_pred cccCceEEEeeccchhhhhh------hHHHHHHHHHHHHhcC-------CCc-EEEEEeccccCCCcchhhhchhhhhhc
Confidence 125589999996664321 1222333333321111 123 344444332 22222 1111
Q ss_pred -cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy6716 242 -RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMN 315 (371)
Q Consensus 242 -rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~ 315 (371)
|+ ..|.|.+-...-.++.+..+++....... ...+.....++.++..+. +||+..++....-+
T Consensus 257 ~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s------~~k~~~~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 257 PRI-SNISFNPIAPTIMKKFLKRICRIEANKKS------GIKVPDTAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred cCc-ceEeecCCcHHHHHHHHHHHHHHhccccc------CCcCchhHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 56 56777766666666777777765554211 112233444555555544 48888887655444
No 266
>KOG0477|consensus
Probab=98.33 E-value=1.7e-05 Score=76.91 Aligned_cols=147 Identities=25% Similarity=0.313 Sum_probs=82.0
Q ss_pred cccChHHHHHHHHHHhhccCCCh-HHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc----c------
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIP-AYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST----L------ 151 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~----l------ 151 (371)
.|.|...+|..+.-.+.--.... ....+. .-.-+|||+|.||||||-+.|++++...+.++.--... +
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkv-RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKV-RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCcee-ccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 58999999999876652111000 000000 12236999999999999999999998877766532111 1
Q ss_pred ---cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhh---hH--HHHHHHhhcccccCCCCCCCC
Q psy6716 152 ---TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRR---MK--SELLCQMDGLASVSNEDPNKS 222 (371)
Q Consensus 152 ---~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~---~~--~~ll~~l~~~~~~~~~~~~~~ 222 (371)
...|.-++. ++-.| ..+|.+|||+|+|-.....+- +.... .+ .-....| ..+
T Consensus 529 dPvtrEWTLEaG-----ALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL-----------qAr 589 (854)
T KOG0477|consen 529 DPVTREWTLEAG-----ALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL-----------QAR 589 (854)
T ss_pred CCccceeeeccC-----eEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH-----------Hhh
Confidence 111111111 11122 368999999999954332221 11000 00 0122222 345
Q ss_pred EEEEeecCCC-----------C--CccHHHHhcccceEEe
Q psy6716 223 VLILAATNFP-----------W--DLDEAFRRRLEKRIYV 249 (371)
Q Consensus 223 v~vI~ttn~~-----------~--~l~~~l~~rf~~~i~~ 249 (371)
+.|||++|+. + .+...+++||+....+
T Consensus 590 ctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 590 CTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 6789999874 1 4567889999754444
No 267
>PHA00729 NTP-binding motif containing protein
Probab=98.31 E-value=1.5e-06 Score=75.53 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=23.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 268
>PF14516 AAA_35: AAA-like domain
Probab=98.29 E-value=4.3e-05 Score=71.42 Aligned_cols=176 Identities=15% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccch-------------------------------
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGD------------------------------- 158 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~------------------------------- 158 (371)
.++..+.|.||..+|||++...+.+.+ +..++.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 445678999999999999998887654 6677888887653311100
Q ss_pred HHHHHHHHHHH---HHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC-CCCCCCEEEEeecCCCCC
Q psy6716 159 SEKLIRLLFLL---AKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN-EDPNKSVLILAATNFPWD 234 (371)
Q Consensus 159 ~~~~~~~~~~~---a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~~v~vI~ttn~~~~ 234 (371)
........|.. .....|-||+|||||.++... .+...|+..|......+. .....++.+|.+...+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 00011112221 112357899999999996531 222344444433222111 112233444433332222
Q ss_pred ccHHHHh---cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 235 LDEAFRR---RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 235 l~~~l~~---rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
+....-+ .+...+.++..+.+|...+++.+-... ....++.+-..+.| -|.=++.+|...
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----------------~~~~~~~l~~~tgG-hP~Lv~~~~~~l 243 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----------------SQEQLEQLMDWTGG-HPYLVQKACYLL 243 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----------------CHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 2211111 345678888889999888887764332 22338888888888 566666666655
Q ss_pred HH
Q psy6716 312 AF 313 (371)
Q Consensus 312 ~~ 313 (371)
..
T Consensus 244 ~~ 245 (331)
T PF14516_consen 244 VE 245 (331)
T ss_pred HH
Confidence 43
No 269
>KOG1968|consensus
Probab=98.25 E-value=2.1e-06 Score=88.28 Aligned_cols=163 Identities=20% Similarity=0.138 Sum_probs=107.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchH-------HHHHHHHHH---HH--HHhCCcEEEeccch
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDS-------EKLIRLLFL---LA--KELAPSIVFFDEID 184 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~-------~~~~~~~~~---~a--~~~~~~il~lDeid 184 (371)
.++++||||+|||+.+..+|..++..++..|.++..++..... ...+...+. .. ....-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 3699999999999999999999999999999987765433110 011111120 00 00112499999999
Q ss_pred hhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHH
Q psy6716 185 SMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF 264 (371)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~ 264 (371)
.+.... +..+.++...+. .....||+++|........-+.+....++|+.|+...+..-+..+
T Consensus 439 ~~~~~d-------Rg~v~~l~~l~~----------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si 501 (871)
T KOG1968|consen 439 GMFGED-------RGGVSKLSSLCK----------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSI 501 (871)
T ss_pred cccchh-------hhhHHHHHHHHH----------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhh
Confidence 997622 222333333332 124468889998776666555555578999999999999888888
Q ss_pred HhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 265 LQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+....+. ..+..++.+.+.+ ++||++....-.
T Consensus 502 ~~se~~k------------i~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 502 CKSEGIK------------ISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred hccccee------------cCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 8765542 3444567777665 557777766443
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.22 E-value=2.3e-06 Score=66.17 Aligned_cols=23 Identities=43% Similarity=0.765 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHcC
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
|.|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 271
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.21 E-value=1.7e-06 Score=59.19 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 338 KAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 338 ~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
.+|+.+||..|+++++||++.+++++|++|.++|
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~F 61 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEF 61 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 3799999999999999999999999999999987
No 272
>KOG0481|consensus
Probab=98.20 E-value=4.6e-05 Score=72.40 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=86.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhh-cC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE----ecccccc---
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDK-LR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI----TSSTLTS--- 153 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v----~~~~l~~--- 153 (371)
.|.|..++|+.+...+.- .....+.. .. .-.-+|||.|.|||.||-+.+.+-.-+..-++.- ++..+..
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 489999999998876521 11111111 00 2234699999999999999999987665544431 1111110
Q ss_pred ------cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHh-hcccccCCCCCCCCEEEE
Q psy6716 154 ------KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM-DGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 154 ------~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l-~~~~~~~~~~~~~~v~vI 226 (371)
.+.-+.. +.- ...++|++|||+|+|-....- .....+-.+-...- .++.. .-+.+.-|+
T Consensus 410 RD~~tReFylEGG-----AMV---LADgGVvCIDEFDKMre~DRV--AIHEAMEQQTISIAKAGITT----~LNSRtSVL 475 (729)
T KOG0481|consen 410 RDPSTREFYLEGG-----AMV---LADGGVVCIDEFDKMREDDRV--AIHEAMEQQTISIAKAGITT----TLNSRTSVL 475 (729)
T ss_pred ecCCcceEEEecc-----eEE---EecCCEEEeehhhccCchhhh--HHHHHHHhhhHHHhhhccee----eecchhhhh
Confidence 0100000 011 123899999999999432110 00111111111110 01111 124567789
Q ss_pred eecCCC-----------CC--ccHHHHhcccceEEecCCCHHHHHH
Q psy6716 227 AATNFP-----------WD--LDEAFRRRLEKRIYVPIPDQATRVS 259 (371)
Q Consensus 227 ~ttn~~-----------~~--l~~~l~~rf~~~i~~~~p~~~er~~ 259 (371)
|++|++ +. +-+.+++||+.++-+.--..++|-.
T Consensus 476 AAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~ 521 (729)
T KOG0481|consen 476 AAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDI 521 (729)
T ss_pred hhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhh
Confidence 999977 22 3488999998877775444443433
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=5.5e-05 Score=61.37 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..++++|+||+|||+++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 569999999999999999999776
No 274
>KOG1051|consensus
Probab=98.19 E-value=4.7e-05 Score=78.13 Aligned_cols=139 Identities=22% Similarity=0.309 Sum_probs=96.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEeccccc--ccccchHHHHHHHHHHHHHHh-CCcEEEecc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSSTLT--SKWYGDSEKLIRLLFLLAKEL-APSIVFFDE 182 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~lDe 182 (371)
++-+|.|.||+|||.++.-+++.. +..++.++...+. .++-|+.+..++.+.+.+... .+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 678999999999999999999864 2346667766543 345678888899999888743 567999999
Q ss_pred chhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC-----CccHHHHhcccceEEecCCCHHHH
Q psy6716 183 IDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATR 257 (371)
Q Consensus 183 id~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er 257 (371)
++-+.+...+.. .-...+.|--.+ ....+.+|+||.... .-+|++-+|| ..+.++.|+.+.-
T Consensus 289 lh~lvg~g~~~~--~~d~~nlLkp~L----------~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~ 355 (898)
T KOG1051|consen 289 LHWLVGSGSNYG--AIDAANLLKPLL----------ARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENL 355 (898)
T ss_pred eeeeecCCCcch--HHHHHHhhHHHH----------hcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccch
Confidence 999987654411 122222222222 133488898876432 2378999999 5588899998876
Q ss_pred HHHHHHHHhc
Q psy6716 258 VSLLTIFLQN 267 (371)
Q Consensus 258 ~~il~~~~~~ 267 (371)
..++...-..
T Consensus 356 ~~iL~~l~~~ 365 (898)
T KOG1051|consen 356 SLILPGLSER 365 (898)
T ss_pred hhhhhhhhhh
Confidence 6677666555
No 275
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.16 E-value=3.3e-06 Score=72.65 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=57.0
Q ss_pred EEEEcCCCchHHHHHHHH-HHH---cCCCeEEEecccccccccch----HHH--H-----------HHHHHHHHHHhCCc
Q psy6716 118 VLLVGPPGTGKTMLAKAA-ATE---TKSNFFNITSSTLTSKWYGD----SEK--L-----------IRLLFLLAKELAPS 176 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~l-a~~---~~~~~~~v~~~~l~~~~~g~----~~~--~-----------~~~~~~~a~~~~~~ 176 (371)
.+++|.||+|||+.|-.. ... .|++++. +...+.-..... ... . ............++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987554 322 3666655 444222111100 000 0 00111111111478
Q ss_pred EEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecC
Q psy6716 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 177 il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~ 251 (371)
+|+|||++.+++.+..........+ ..+... +..+.-|+.+|..+..+++.+++.....+++..
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~----~~l~~h-------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII----EFLAQH-------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH----HGGGGC-------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccchHHH----HHHHHh-------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 9999999999987765321112222 223211 133567888999999999999887766666643
No 276
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.15 E-value=3.7e-05 Score=72.56 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH----cCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE----TKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~----~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~ 189 (371)
...++++.||+|||||+++.+++.. .| -.++++.+... ... ..... -....+|+|||+..+.-.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLKFA 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCcCC
Confidence 3468999999999999999998766 23 12223333211 111 11111 123679999999886322
Q ss_pred CCCChhhhhhhHHHHHHHhhccccc-CCC--CCCCCEEEEeecCC
Q psy6716 190 RSTSTDVTRRMKSELLCQMDGLASV-SNE--DPNKSVLILAATNF 231 (371)
Q Consensus 190 ~~~~~~~~~~~~~~ll~~l~~~~~~-~~~--~~~~~v~vI~ttn~ 231 (371)
.....+..+...|...... +.. .....+++++-.|.
T Consensus 276 ------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 ------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred ------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1344566666666533322 211 12335555565553
No 277
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00051 Score=59.93 Aligned_cols=137 Identities=15% Similarity=0.075 Sum_probs=95.5
Q ss_pred CCccEEEEcCCC-chHHHHHHHHHHHcCC---------CeEEEecccccccc-cchHHHHHHHHHHHHHHh----CCcEE
Q psy6716 114 PWKGVLLVGPPG-TGKTMLAKAAATETKS---------NFFNITSSTLTSKW-YGDSEKLIRLLFLLAKEL----APSIV 178 (371)
Q Consensus 114 ~~~~vLl~Gp~G-tGKt~la~~la~~~~~---------~~~~v~~~~l~~~~-~g~~~~~~~~~~~~a~~~----~~~il 178 (371)
-.+..||.|..+ +||..++..++..+.. .++.+....-..+. ..-....++.+...+... ..-|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 346799999998 9999999888776532 23333322100000 000122344444433322 24599
Q ss_pred EeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHH
Q psy6716 179 FFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRV 258 (371)
Q Consensus 179 ~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~ 258 (371)
+|+++|.| .....+.||..+++ ++.++++|..|+.+..+.+.+++|+ ..+.++.|....-.
T Consensus 94 II~~ae~m----------t~~AANALLKtLEE--------PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELM----------NLNAANSCLKILED--------APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYN 154 (263)
T ss_pred EEechHHh----------CHHHHHHHHHhhcC--------CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHH
Confidence 99999999 67788899999854 4567888888888999999999999 77999999998888
Q ss_pred HHHHHHHhcCC
Q psy6716 259 SLLTIFLQNVK 269 (371)
Q Consensus 259 ~il~~~~~~~~ 269 (371)
+....++....
T Consensus 155 e~~~~~~~p~~ 165 (263)
T PRK06581 155 ELYSQFIQPIA 165 (263)
T ss_pred HHHHHhccccc
Confidence 88888876543
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=0.00023 Score=68.10 Aligned_cols=133 Identities=20% Similarity=0.176 Sum_probs=77.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhh
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDV 196 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~ 196 (371)
-++|+||.+||||++++.+.......+++++..+.......- .........+.......+|||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 699999999999999999888876656666655544322111 111112222221134799999999872
Q ss_pred hhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC--CCccHHHHhcccceEEecCCCHHHHHH-------------HH
Q psy6716 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP--WDLDEAFRRRLEKRIYVPIPDQATRVS-------------LL 261 (371)
Q Consensus 197 ~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~--~~l~~~l~~rf~~~i~~~~p~~~er~~-------------il 261 (371)
.....+-...|... . ++++.+++... ......+..|. ..+.+.|.+-.|... .+
T Consensus 108 --~W~~~lk~l~d~~~-------~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f 176 (398)
T COG1373 108 --DWERALKYLYDRGN-------L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLF 176 (398)
T ss_pred --hHHHHHHHHHcccc-------c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHH
Confidence 22222222222111 1 34444333322 12234444485 778888889998865 57
Q ss_pred HHHHhcCCCC
Q psy6716 262 TIFLQNVKVD 271 (371)
Q Consensus 262 ~~~~~~~~~~ 271 (371)
..++...+++
T Consensus 177 ~~Yl~~GGfP 186 (398)
T COG1373 177 EKYLETGGFP 186 (398)
T ss_pred HHHHHhCCCc
Confidence 7888776764
No 279
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.11 E-value=3e-05 Score=60.70 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=37.2
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCcc--EEEEcCCCchHHHHHHHHHHHc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKG--VLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~--vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+.|+.-+.+.+..++.-.+ ....|.++ +-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l-------~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHL-------ANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHH-------cCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47899988888888873322 11233343 4599999999999999999985
No 280
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.11 E-value=7e-06 Score=71.46 Aligned_cols=24 Identities=42% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la 136 (371)
..+..+||||+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 334669999999999999999986
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.11 E-value=0.00015 Score=69.77 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
++..++++|++|+|||+++..+|..+ +..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45679999999999999999998765 44555565543
No 282
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.09 E-value=2.9e-05 Score=66.23 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=44.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccccccccc------c-----------------------hHH-----
Q psy6716 118 VLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKWY------G-----------------------DSE----- 160 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~~~------g-----------------------~~~----- 160 (371)
+|++||||||||+++..++.. .+.++++++...-..... | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999887654 356777766532211100 0 000
Q ss_pred HHHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 161 KLIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 161 ~~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
.....+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123344444556799999999998754
No 283
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.08 E-value=3.3e-06 Score=66.68 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=27.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
|+|.|+||+||||+|+.|++.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999888776543
No 284
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=72.61 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=59.6
Q ss_pred CCCCccEEEEcCCCchHHHHHHHHHHHcCCCe-EEEeccccccc-------ccchHHHHHHHHHHHHHHhCCcEEEeccc
Q psy6716 112 RRPWKGVLLVGPPGTGKTMLAKAAATETKSNF-FNITSSTLTSK-------WYGDSEKLIRLLFLLAKELAPSIVFFDEI 183 (371)
Q Consensus 112 ~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~-~~v~~~~l~~~-------~~g~~~~~~~~~~~~a~~~~~~il~lDei 183 (371)
..+++|+.|||+-|.|||+|.-.....+..+- ..+....++.. ..|...-.-..+-+.+. .-.||++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~--~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA--ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh--cCCEEEeeee
Confidence 45779999999999999999999887765422 22222222211 11221111111111222 1349999999
Q ss_pred hhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 184 DSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 184 d~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
+-= +-....++..|+..| -..+|.+++|+|.+
T Consensus 140 ~Vt-------DI~DAMiL~rL~~~L----------f~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVT-------DIADAMILGRLLEAL----------FARGVVLVATSNTA 171 (367)
T ss_pred eec-------ChHHHHHHHHHHHHH----------HHCCcEEEEeCCCC
Confidence 642 122345667777766 13478999999976
No 285
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.04 E-value=3.2e-05 Score=67.38 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=48.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc-----------------------chHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY-----------------------GDSEKLIRLLF 167 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~-----------------------g~~~~~~~~~~ 167 (371)
+..-++|+||||+|||+++..++... +.+++++++..+....+ .+....+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 34568899999999999999887543 56788888865211100 01111233334
Q ss_pred HHHHHhCCcEEEeccchhhcc
Q psy6716 168 LLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 168 ~~a~~~~~~il~lDeid~l~~ 188 (371)
..+....+.+|+||-+..+..
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhH
Confidence 444444688999999999864
No 286
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.02 E-value=7.3e-06 Score=79.90 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=46.9
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-CeEEEe
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-NFFNIT 147 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-~~~~v~ 147 (371)
.|+|+.|+++++.++.+++. ....++.....-++|.||||+|||++|++|++.+.. +++.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~------~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR------HAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred chhcccCcHHHHHHHHHHHH------HHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 57899999999999998772 122333444456889999999999999999987632 555553
No 287
>PHA02624 large T antigen; Provisional
Probab=98.01 E-value=4.5e-05 Score=74.86 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=71.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC-C
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST-S 193 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~-~ 193 (371)
.+.++|+||||||||+++.+|++.++...+.|+++.-.. -|...-....-+++||++-.-.-.... +
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhhhceEEEeeeccccccccccCC
Confidence 357999999999999999999999977777777543211 122222223458888888543321110 0
Q ss_pred hhhhhhhHHHHHHHhhcccccC------CCCCCCCEEEEeecCCCCCccHHHHhcccceEEec
Q psy6716 194 TDVTRRMKSELLCQMDGLASVS------NEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVP 250 (371)
Q Consensus 194 ~~~~~~~~~~ll~~l~~~~~~~------~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~ 250 (371)
.+.--.-...|-+.|||..... +.....--..|.|||. ..+|..+.-||..++.|.
T Consensus 499 ~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~ 560 (647)
T PHA02624 499 SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFK 560 (647)
T ss_pred cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhcccc
Confidence 0000011234556666651110 0000112234557775 578899999998888875
No 288
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.98 E-value=1.4e-05 Score=66.90 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=20.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998877
No 289
>PRK08118 topology modulation protein; Reviewed
Probab=97.98 E-value=1.5e-05 Score=66.77 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=29.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
.|+++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888764
No 290
>PRK04296 thymidine kinase; Provisional
Probab=97.97 E-value=8.4e-05 Score=63.73 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=23.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
-++++||+|+|||+++..++..+ +..++.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 37899999999999998877654 55555554
No 291
>KOG2543|consensus
Probab=97.97 E-value=0.00015 Score=66.72 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=89.4
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc--------
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK-------- 154 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~-------- 154 (371)
.+.+.+.++..+...+.. .....|..+.|+|.+|||||.+++.+-+.++.+.+.++|-+....
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 456777888888877621 111234567999999999999999999999999888887654311
Q ss_pred -------ccchHH----HHHHH---HHHH--HHHh--CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC
Q psy6716 155 -------WYGDSE----KLIRL---LFLL--AKEL--APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN 216 (371)
Q Consensus 155 -------~~g~~~----~~~~~---~~~~--a~~~--~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 216 (371)
..|... .++.. .+.+ +... ....|+||++|.+-. ....++..|++.-.-..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~---- 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLN---- 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhC----
Confidence 111111 11111 2222 1111 256889999999931 12233333333221111
Q ss_pred CCCCCCEEEEeecCCCCCccHHHHhc----ccceEEecCCCHHHHHHHHHHHH
Q psy6716 217 EDPNKSVLILAATNFPWDLDEAFRRR----LEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 217 ~~~~~~v~vI~ttn~~~~l~~~l~~r----f~~~i~~~~p~~~er~~il~~~~ 265 (371)
...+.|+.+... .+.....+ -..++++|.|+.++...|+.+--
T Consensus 147 ---~~~i~iils~~~---~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 147 ---EPTIVIILSAPS---CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ---CCceEEEEeccc---cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 113334433322 12222221 22578899999999999887543
No 292
>PRK13949 shikimate kinase; Provisional
Probab=97.96 E-value=7.1e-05 Score=62.87 Aligned_cols=31 Identities=42% Similarity=0.598 Sum_probs=28.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999987655
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=0.00029 Score=66.81 Aligned_cols=173 Identities=18% Similarity=0.153 Sum_probs=84.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc-------CCCe--EEEeccccccc--------------ccchHHHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET-------KSNF--FNITSSTLTSK--------------WYGDSEKLIRLLFLLAK 171 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~-------~~~~--~~v~~~~l~~~--------------~~g~~~~~~~~~~~~a~ 171 (371)
+..++|+||+|+|||+++..+|..+ +..+ +.+|+...... ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999988754 2333 33443221100 0111222233333322
Q ss_pred HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcc----cceE
Q psy6716 172 ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRL----EKRI 247 (371)
Q Consensus 172 ~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf----~~~i 247 (371)
....+|+||.+..... ....+..+...++.... +...++|+.+|.....+...+ .+| ...+
T Consensus 253 -~~~DlVLIDTaGr~~~--------~~~~l~el~~~l~~~~~-----~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~ 317 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK--------DFMKLAEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTV 317 (388)
T ss_pred -CCCCEEEEcCCCCCcc--------CHHHHHHHHHHHHhcCC-----CCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEE
Confidence 3457999999987632 11113344444432221 123566676666655555333 333 1345
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCcchh-hhhhcccCCCcccHHHHHHHccCCCHHH
Q psy6716 248 YVPIPDQATRVSLLTIFLQNVKVDKDVN-IEVLNVKVDKDVNIEVLAERLEGYSSAD 303 (371)
Q Consensus 248 ~~~~p~~~er~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~g~s~~d 303 (371)
-+.-.|...+...+-......+++..-- .+-...+-....+-..+++..-||+-++
T Consensus 318 I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 318 IFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 5666666555554444443333221000 0000000122344556666666776544
No 294
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.94 E-value=0.00081 Score=62.73 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=51.9
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC---------------CccHHH
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW---------------DLDEAF 239 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~---------------~l~~~l 239 (371)
+-|++|||+|++ .......++..+..+.. ..++.+|.+.+... ......
T Consensus 173 ~iViiIDdLDR~----------~~~~i~~~l~~ik~~~~------~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 173 RIVIIIDDLDRC----------SPEEIVELLEAIKLLLD------FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred eEEEEEcchhcC----------CcHHHHHHHHHHHHhcC------CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 569999999999 33344556666554443 34667776766430 122344
Q ss_pred Hh-cccceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 240 RR-RLEKRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 240 ~~-rf~~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
+. -++..+.+|.|+..+...++...+.....
T Consensus 237 LeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 237 LEKIIQVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred HHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 44 45778899999999888888877655443
No 295
>PRK10536 hypothetical protein; Provisional
Probab=97.92 E-value=0.00018 Score=63.69 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.-+++.||+|||||++|.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998874
No 296
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.91 E-value=8e-05 Score=79.39 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=95.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc------ccccchHH---HHHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT------SKWYGDSE---KLIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~------~~~~g~~~---~~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
-++||.||+.+|||++...+|+..|..|++|+-.+.. +.|+.... .....++-.|-+ .+-.|+|||+.-.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeeccccC
Confidence 4699999999999999999999999999999865433 22321111 111223333322 3568999999766
Q ss_pred ccCCCCChhhhhhhHHHHHHHhhccccc-----CC-CCCCCCEEEEeecCCC------CCccHHHHhcccceEEecCCCH
Q psy6716 187 CSHRSTSTDVTRRMKSELLCQMDGLASV-----SN-EDPNKSVLILAATNFP------WDLDEAFRRRLEKRIYVPIPDQ 254 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~-~~~~~~v~vI~ttn~~------~~l~~~l~~rf~~~i~~~~p~~ 254 (371)
+..++..|-+.+|..... .. ..+..+.+++||-|+| ..|..+++.|| ..+++.--+.
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipe 1036 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPE 1036 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcH
Confidence 567777777777743321 11 1345678888998988 35778999999 6678877777
Q ss_pred HHHHHHHHHHHh
Q psy6716 255 ATRVSLLTIFLQ 266 (371)
Q Consensus 255 ~er~~il~~~~~ 266 (371)
+|...|+...++
T Consensus 1037 dEle~ILh~rc~ 1048 (4600)
T COG5271 1037 DELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHHhccCc
Confidence 788887765543
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.90 E-value=5e-05 Score=73.75 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=52.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc------ch--------HHHHHHHHHHHHHHhCC
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY------GD--------SEKLIRLLFLLAKELAP 175 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~------g~--------~~~~~~~~~~~a~~~~~ 175 (371)
.+..-++|+|+||+|||+++..++... +.++++++..+...... +. .+..+..++...+...|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344568899999999999999988754 56788887654332111 00 01123445555566678
Q ss_pred cEEEeccchhhccC
Q psy6716 176 SIVFFDEIDSMCSH 189 (371)
Q Consensus 176 ~il~lDeid~l~~~ 189 (371)
.+|+||.+..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 99999999998754
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.90 E-value=9.2e-05 Score=68.19 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=49.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc----------------ccchHHHHHHHHHHHHHHhCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK----------------WYGDSEKLIRLLFLLAKELAP 175 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~~~ 175 (371)
..-++|+||||||||++|..++... +.+++++++...... .....+..+..+....+...+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV 134 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence 3458899999999999988765543 667778776543211 011223334344444455568
Q ss_pred cEEEeccchhhccC
Q psy6716 176 SIVFFDEIDSMCSH 189 (371)
Q Consensus 176 ~il~lDeid~l~~~ 189 (371)
.+|+||-+..+.+.
T Consensus 135 ~lIVIDSv~al~~~ 148 (321)
T TIGR02012 135 DIIVVDSVAALVPK 148 (321)
T ss_pred cEEEEcchhhhccc
Confidence 99999999999864
No 299
>PRK07261 topology modulation protein; Provisional
Probab=97.88 E-value=3.7e-05 Score=64.78 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=29.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
.|+|.|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 389999999999999999999999988876643
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.85 E-value=7.4e-05 Score=70.63 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=51.1
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc------c--------hHHHHHHHHHHHHHHhCC
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY------G--------DSEKLIRLLFLLAKELAP 175 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~------g--------~~~~~~~~~~~~a~~~~~ 175 (371)
.+..-++|+|+||+|||+++..++... +.++++++..+-..... + .....+..+........|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344568999999999999999988654 35777776643221100 0 011223445555666679
Q ss_pred cEEEeccchhhccC
Q psy6716 176 SIVFFDEIDSMCSH 189 (371)
Q Consensus 176 ~il~lDeid~l~~~ 189 (371)
.+|+||+|..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 99999999998643
No 301
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.83 E-value=0.00051 Score=73.20 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=80.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc---cccc------------c---------------hHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT---SKWY------------G---------------DSEKLIRL 165 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~---~~~~------------g---------------~~~~~~~~ 165 (371)
+-++|+||+|.|||+++...+...+ ++.-++...-. ..+. + .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887666 55444432111 0000 0 00111222
Q ss_pred HHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhccc
Q psy6716 166 LFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLE 244 (371)
Q Consensus 166 ~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~ 244 (371)
++..... ..|.+|+|||++.+.. ......+..|+..+ +.++.+|.++.....++-.-.+.-+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~------~~~~~~l~~l~~~~-----------~~~~~lv~~sR~~~~~~~~~l~~~~ 174 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN------PEIHEAMRFFLRHQ-----------PENLTLVVLSRNLPPLGIANLRVRD 174 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC------hHHHHHHHHHHHhC-----------CCCeEEEEEeCCCCCCchHhHHhcC
Confidence 3332222 4588999999998821 11222333333332 3344454455543223211111112
Q ss_pred ceEEec----CCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCC
Q psy6716 245 KRIYVP----IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYS 300 (371)
Q Consensus 245 ~~i~~~----~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s 300 (371)
..+.+. ..+.+|-.+++...+... .+..+...+.+.|.|+.
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~~---------------~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSSP---------------IEAAESSRLCDDVEGWA 219 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCCC---------------CCHHHHHHHHHHhCChH
Confidence 234444 668888888887654321 23445778888888853
No 302
>PHA02774 E1; Provisional
Probab=97.83 E-value=0.00016 Score=70.80 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=60.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE-EEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF-NITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST 194 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~-~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~ 194 (371)
+.++|+||||||||++|.+|++.++..++ .++... .+ .+..+. ...+++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F----------wLqpl~--d~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF----------WLQPLA--DAKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc----------ccchhc--cCCEEEEecCcch--------
Confidence 57999999999999999999999865443 355321 10 011111 2459999999211
Q ss_pred hhhhhhHHHHHHHhhccccc-----CCCCCCCCEEEEeecCCCCCcc---HHHHhcccceEEec
Q psy6716 195 DVTRRMKSELLCQMDGLASV-----SNEDPNKSVLILAATNFPWDLD---EAFRRRLEKRIYVP 250 (371)
Q Consensus 195 ~~~~~~~~~ll~~l~~~~~~-----~~~~~~~~v~vI~ttn~~~~l~---~~l~~rf~~~i~~~ 250 (371)
...-+...|...|++-.-. .+........+|.|||..-.-+ ..|.+|+ ..+.++
T Consensus 492 -~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~ 553 (613)
T PHA02774 492 -CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFP 553 (613)
T ss_pred -HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECC
Confidence 0122233455666654211 0001112345677888543323 2344576 445553
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.82 E-value=2e-05 Score=66.37 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
++..|+|+|+||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 346799999999999999999999999988753
No 304
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=0.00017 Score=63.64 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
...-++|+||||+|||++|..++... +.+++++++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34458999999999999999988643 6788888877
No 305
>PRK14974 cell division protein FtsY; Provisional
Probab=97.79 E-value=0.00062 Score=63.37 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=26.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4678999999999999888888764 4445445443
No 306
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.78 E-value=2.4e-05 Score=66.49 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=37.5
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---eEEEecccc
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---FFNITSSTL 151 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---~~~v~~~~l 151 (371)
++|.++..+++...+. ......+..++|+|++|+|||++++++......+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~---------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD---------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG---------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH---------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6788999999988772 1112334779999999999999999987765433 666666654
No 307
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.78 E-value=0.00021 Score=65.93 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=49.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccccccc----------------ccchHHHHHHHHHHHHHHhCCc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSK----------------WYGDSEKLIRLLFLLAKELAPS 176 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~~~~ 176 (371)
.-+.++||||||||++|-.++.. .+..++++++..-... .....+..+..+....+...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 45789999999999999987654 3677888876442210 0112233333333444555689
Q ss_pred EEEeccchhhccC
Q psy6716 177 IVFFDEIDSMCSH 189 (371)
Q Consensus 177 il~lDeid~l~~~ 189 (371)
+|+||-+..+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999999864
No 308
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.77 E-value=0.00017 Score=60.48 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
.+|+.|+||+|||++|..++...+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999887777766543
No 309
>KOG3347|consensus
Probab=97.77 E-value=2.1e-05 Score=62.70 Aligned_cols=31 Identities=39% Similarity=0.681 Sum_probs=28.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.+||++|-||||||+++..+|..++.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 5799999999999999999999999998754
No 310
>PRK04040 adenylate kinase; Provisional
Probab=97.75 E-value=0.00069 Score=57.89 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc--CCCe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET--KSNF 143 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~--~~~~ 143 (371)
.-++++|+||+|||++++.+++.+ +.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 468999999999999999999998 4444
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.75 E-value=0.00033 Score=61.98 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc-----------------------------c--hH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY-----------------------------G--DS 159 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~-----------------------------g--~~ 159 (371)
+...+++.||||||||+++..++... +..+++++...-..... + +.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999975544432 55666665432111000 0 01
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccchhhc
Q psy6716 160 EKLIRLLFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 160 ~~~~~~~~~~a~~~~~~il~lDeid~l~ 187 (371)
...+..+........|.+++||++-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 2233334444444568999999998874
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.74 E-value=8.1e-05 Score=60.46 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
|++.||||+|||++|+.++..++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999988 4445544443
No 313
>PRK10867 signal recognition particle protein; Provisional
Probab=97.73 E-value=0.0029 Score=60.92 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=87.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecccccccc---------------c-----chHHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSSTLTSKW---------------Y-----GDSEKLIRLLFL 168 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~l~~~~---------------~-----g~~~~~~~~~~~ 168 (371)
.++.-++++|++|+|||+++..+|..+ +..+..+++....... + ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345678999999999999887777643 5566666665332110 0 112223334444
Q ss_pred HHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-CCcc--HHHHhccc-
Q psy6716 169 LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-WDLD--EAFRRRLE- 244 (371)
Q Consensus 169 ~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-~~l~--~~l~~rf~- 244 (371)
.++.....+|++|=...+.. ......++....+.. .+..++++..+... +.+. ..+..++.
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~--------d~~lm~eL~~i~~~v-------~p~evllVlda~~gq~av~~a~~F~~~~~i 242 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHI--------DEELMDELKAIKAAV-------NPDEILLVVDAMTGQDAVNTAKAFNEALGL 242 (433)
T ss_pred HHHhcCCCEEEEeCCCCccc--------CHHHHHHHHHHHHhh-------CCCeEEEEEecccHHHHHHHHHHHHhhCCC
Confidence 55554567888887655421 112222222222111 13334444333221 1111 12222221
Q ss_pred ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 245 KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 245 ~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
..+.+...|...|...+.......+.+..--.....++-....+.+.++.+.-| .+|+..|++.|..
T Consensus 243 ~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~ 309 (433)
T PRK10867 243 TGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQE 309 (433)
T ss_pred CEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHH
Confidence 234455566555554444444333332110000001112345566777777654 5688888886643
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.73 E-value=0.00029 Score=62.15 Aligned_cols=94 Identities=23% Similarity=0.305 Sum_probs=56.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH---c-CCCeEEEecccccccc---------------------------------
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE---T-KSNFFNITSSTLTSKW--------------------------------- 155 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~---~-~~~~~~v~~~~l~~~~--------------------------------- 155 (371)
.++..+|+.||||||||+++..++.. . +.++++++...-...+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 34456999999999999999876543 2 7787777654322100
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHh
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l 208 (371)
..........+....+...+.+++||.+..+. . ..........+..|...+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~-~~~~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALL-L-YDDPEELRRFLRALIKFL 147 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-T-SSSGGGHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-h-cCCHHHHHHHHHHHHHHH
Confidence 01223444555566666778999999999992 2 222222334455555555
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.71 E-value=0.00017 Score=62.28 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=40.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCC----CeEEEe-cccccc---------cccchHHHHHHHHHHHHHHhCCcEEEecc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKS----NFFNIT-SSTLTS---------KWYGDSEKLIRLLFLLAKELAPSIVFFDE 182 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~----~~~~v~-~~~l~~---------~~~g~~~~~~~~~~~~a~~~~~~il~lDe 182 (371)
-++|.||+|+|||+++++++..... .++.+. ..++.. ..++.........+..+-...|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999998877642 222221 111110 00111112234445555566799999999
Q ss_pred c
Q psy6716 183 I 183 (371)
Q Consensus 183 i 183 (371)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 316
>PRK03839 putative kinase; Provisional
Probab=97.71 E-value=3.1e-05 Score=65.76 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=27.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999887543
No 317
>PRK13947 shikimate kinase; Provisional
Probab=97.70 E-value=3.6e-05 Score=64.71 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=28.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987644
No 318
>PRK00625 shikimate kinase; Provisional
Probab=97.69 E-value=3.7e-05 Score=64.71 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=28.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.|+|+|.||+|||++++.+|+.++.+++.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999988665
No 319
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.68 E-value=0.0001 Score=63.45 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=50.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH----HHHHHHHHHHHH---------HhCCcEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS----EKLIRLLFLLAK---------ELAPSIVF 179 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~----~~~~~~~~~~a~---------~~~~~il~ 179 (371)
+..++.||||||||++++.+...+ +..++.+.++.-....+... ...+...+.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 458889999999999999987654 45665554432111000000 000111110000 12347999
Q ss_pred eccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 180 FDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 180 lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
|||+..+ .......++..+... ..++++++=.++
T Consensus 99 VDEasmv----------~~~~~~~ll~~~~~~--------~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMV----------DSRQLARLLRLAKKS--------GAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-----------BHHHHHHHHHHS-T---------T-EEEEEE-TTS
T ss_pred Eeccccc----------CHHHHHHHHHHHHhc--------CCEEEEECCcch
Confidence 9999877 555566666665321 235666666554
No 320
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.64 E-value=0.00032 Score=58.82 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc-----------------chHHHHHHHHHHHHHHhCCcEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY-----------------GDSEKLIRLLFLLAKELAPSIVFF 180 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~-----------------g~~~~~~~~~~~~a~~~~~~il~l 180 (371)
+|++|++|+|||++|..++...+.+++++....-.+.-. .+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 689999999999999999988777777775543221100 11122222332211 14679999
Q ss_pred ccchhhccCC
Q psy6716 181 DEIDSMCSHR 190 (371)
Q Consensus 181 Deid~l~~~~ 190 (371)
|-+..+..+.
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998886653
No 321
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.63 E-value=5.4e-05 Score=62.36 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=27.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
+|+|+|+||+|||++|+.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887543
No 322
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00039 Score=59.87 Aligned_cols=72 Identities=24% Similarity=0.434 Sum_probs=46.2
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC--------CCeEEEecc-cccccccc-------------hHHHHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK--------SNFFNITSS-TLTSKWYG-------------DSEKLIRLLFLLAKE 172 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~--------~~~~~v~~~-~l~~~~~g-------------~~~~~~~~~~~~a~~ 172 (371)
..+.|+.||||+|||++.|-+|+.+. ..+..+|-+ ++.+-..| +..-.-.......+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 35689999999999999999998652 234444433 22221111 111122334556677
Q ss_pred hCCcEEEeccchhh
Q psy6716 173 LAPSIVFFDEIDSM 186 (371)
Q Consensus 173 ~~~~il~lDeid~l 186 (371)
+.|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 88999999999654
No 323
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.62 E-value=0.0005 Score=61.02 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=47.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccccccccc---------------------------------c
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKWY---------------------------------G 157 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~~~---------------------------------g 157 (371)
.+..++++|+||+|||+++..++.. .+.++++++...-...+. .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 3456889999999999999998654 366777766543221100 0
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeccchhhc
Q psy6716 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMC 187 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~il~lDeid~l~ 187 (371)
.....+..+........+.+++||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 112333444445555578999999998763
No 324
>PTZ00202 tuzin; Provisional
Probab=97.61 E-value=0.0019 Score=61.40 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=46.8
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
..+++|.+....+|...+. ... ..+.-+.|+||+|+|||++++.+...++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 5678999999999998872 111 2234678999999999999999999888777777665
No 325
>KOG2383|consensus
Probab=97.61 E-value=0.00032 Score=65.05 Aligned_cols=27 Identities=41% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+|+|++|||.-|||||+|.-..-..+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 457999999999999999998876443
No 326
>PRK06762 hypothetical protein; Provisional
Probab=97.60 E-value=0.00016 Score=60.50 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=30.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.-++|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4588999999999999999999987666666665544
No 327
>PRK09354 recA recombinase A; Provisional
Probab=97.59 E-value=0.00057 Score=63.61 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=48.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccccccc----------------ccchHHHHHHHHHHHHHHhCCc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSK----------------WYGDSEKLIRLLFLLAKELAPS 176 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~~~~~~ 176 (371)
.-++|+||+|||||++|-.++.. .+..+++++...-... -....+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 45789999999999999886543 4667788876542211 0012233333333344455688
Q ss_pred EEEeccchhhcc
Q psy6716 177 IVFFDEIDSMCS 188 (371)
Q Consensus 177 il~lDeid~l~~ 188 (371)
+|+||-+-.+.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999976
No 328
>PRK06217 hypothetical protein; Validated
Probab=97.58 E-value=6.6e-05 Score=64.00 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=28.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.|+|.|+||+|||++++.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999877654
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00048 Score=64.83 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...++|.||+|+|||+++..+|..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998753
No 330
>KOG0479|consensus
Probab=97.58 E-value=0.00039 Score=67.22 Aligned_cols=152 Identities=22% Similarity=0.240 Sum_probs=83.0
Q ss_pred cccChHHHHHHHHHHhhccCCChH-HhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE---------Eeccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPA-YFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN---------ITSST 150 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~-~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~---------v~~~~ 150 (371)
.|.|.+.+|+.|.-.+ +.--+ .+.+.. .-.-+||+.|.|.+.||-|.|++-+.....+-. +.+.-
T Consensus 302 SI~GH~~vKkAillLL---lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLL---LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHH---hccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 5899999999988665 21111 111111 122469999999999999999998765432211 11110
Q ss_pred ccccccchHHHHHH-HHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh-ccccc-CCCCCCCCEEEEe
Q psy6716 151 LTSKWYGDSEKLIR-LLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD-GLASV-SNEDPNKSVLILA 227 (371)
Q Consensus 151 l~~~~~g~~~~~~~-~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~-~~~~~-~~~~~~~~v~vI~ 227 (371)
-..+- ..++.+. .+.-.| ..+|++|||+|+|..- .+..+.+.+.+-. .+... -...-+.++-|+|
T Consensus 379 TtD~e--TGERRLEAGAMVLA---DRGVVCIDEFDKMsDi-------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlA 446 (818)
T KOG0479|consen 379 TTDQE--TGERRLEAGAMVLA---DRGVVCIDEFDKMSDI-------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLA 446 (818)
T ss_pred eeccc--cchhhhhcCceEEc---cCceEEehhcccccch-------hHHHHHHHHhcceEEeEeccchhhhccceeeee
Confidence 00111 1111111 111122 3689999999999321 2222222222110 00000 0012356889999
Q ss_pred ecCCCC-------------CccHHHHhcccceEEe
Q psy6716 228 ATNFPW-------------DLDEAFRRRLEKRIYV 249 (371)
Q Consensus 228 ttn~~~-------------~l~~~l~~rf~~~i~~ 249 (371)
++|+.+ .|+..|++||+..+.+
T Consensus 447 AANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 447 AANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred ecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 999772 3678999999875554
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.57 E-value=0.00057 Score=56.07 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++..++|+||+|||||++.|.+|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344569999999999999999999753
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.57 E-value=0.0028 Score=57.51 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
++..++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34678899999999999999888765 4455555554
No 333
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.57 E-value=0.00059 Score=60.68 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSS 149 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~ 149 (371)
.+...+|++||||+|||++|-.++.+ .+.++++++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 34567999999999999999875543 35566666543
No 334
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.57 E-value=6.2e-05 Score=63.65 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=29.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
+-++|.|+||+|||++|+.++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45899999999999999999999888777665443
No 335
>PRK14532 adenylate kinase; Provisional
Probab=97.56 E-value=6.6e-05 Score=64.24 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=28.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
.++|.||||+|||++|+.+|+..+.++ +++.++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHH
Confidence 489999999999999999999998665 45555543
No 336
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.56 E-value=0.00019 Score=64.84 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.+++|.||+|+|||++.+.++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999998763
No 337
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.56 E-value=6.8e-05 Score=63.81 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=27.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
|+++||||+|||++|+.+|..++.+ +++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999754 45665554
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.56 E-value=0.0052 Score=58.93 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
++.-++|+|++|+||||++..+|..+ +..+..+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 34678999999999999999998765 55666666643
No 339
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.0021 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++|+|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987664
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.55 E-value=7.7e-05 Score=63.05 Aligned_cols=34 Identities=32% Similarity=0.655 Sum_probs=27.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.|+|.||||+||||+|+.|++.+ ++.+++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 48999999999999999999994 44566655543
No 341
>PRK13948 shikimate kinase; Provisional
Probab=97.55 E-value=9.5e-05 Score=62.73 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45578999999999999999999999999998554
No 342
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00047 Score=61.14 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~ 150 (371)
+..-+.|+||||+|||+++..++... +..+++++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34457899999999999999987542 25677777654
No 343
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.54 E-value=0.0042 Score=59.79 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~ 150 (371)
++.-+++.|++|+|||+++..+|..+ +..+..++|..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34679999999999999988877653 45666676653
No 344
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.53 E-value=7.8e-05 Score=61.82 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=29.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.+++|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 345
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.53 E-value=0.00053 Score=72.85 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=83.3
Q ss_pred CCCccEEEEcCCCchHHHH-HHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhC--------------CcE
Q psy6716 113 RPWKGVLLVGPPGTGKTML-AKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELA--------------PSI 177 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~l-a~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~--------------~~i 177 (371)
...++++++||||+|||++ +.++-.++-..++.++.+.-.. ++..+..+-+....+. ..|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 4557899999999999985 5667777777777777654321 1222222222221111 249
Q ss_pred EEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCC-----CCCCCEEEEeecCCCCCcc-----HHHHhcccceE
Q psy6716 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNE-----DPNKSVLILAATNFPWDLD-----EAFRRRLEKRI 247 (371)
Q Consensus 178 l~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-----~~~~~v~vI~ttn~~~~l~-----~~l~~rf~~~i 247 (371)
||.|||+ |...+.-..+. .--|++.|-..+..... ..-.++++.++||++.+.. ..+.|+- ..+
T Consensus 1567 LFcDeIn-Lp~~~~y~~~~----vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYYPPT----VIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred EEeeccC-CccccccCCCc----eEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 9999998 43222211110 00122111111100000 1135789999999986543 4444444 678
Q ss_pred EecCCCHHHHHHHHHHHHhcCC
Q psy6716 248 YVPIPDQATRVSLLTIFLQNVK 269 (371)
Q Consensus 248 ~~~~p~~~er~~il~~~~~~~~ 269 (371)
++..|.......|.+.++...-
T Consensus 1641 f~~ype~~SL~~Iyea~l~~s~ 1662 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMGSY 1662 (3164)
T ss_pred EecCcchhhHHHHHHHHHHHHH
Confidence 8899999999998887776543
No 346
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.00063 Score=58.74 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
.-++|+||+|+|||++.|.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999985
No 347
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0035 Score=59.05 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=26.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+..++|.||+|+|||+++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3679999999999999999998765 3345455543
No 348
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.52 E-value=0.00046 Score=67.17 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc------ch--------HHHHHHHHHHHHHHhCC
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY------GD--------SEKLIRLLFLLAKELAP 175 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~------g~--------~~~~~~~~~~~a~~~~~ 175 (371)
.+..-++|.|+||+|||+++..++... +.++++++..+-..... +- .+..+..+...+....|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 344568899999999999999987654 45677777654322110 00 01123445555566679
Q ss_pred cEEEeccchhhccC
Q psy6716 176 SIVFFDEIDSMCSH 189 (371)
Q Consensus 176 ~il~lDeid~l~~~ 189 (371)
.+|+||.|..+...
T Consensus 172 ~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 172 QACVIDSIQTLYSP 185 (454)
T ss_pred cEEEEecchhhccc
Confidence 99999999998653
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.51 E-value=0.00059 Score=59.81 Aligned_cols=35 Identities=37% Similarity=0.430 Sum_probs=27.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
..-++|+|+||+|||+++..+|... +.++++++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3458899999999999999988654 5577777654
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.51 E-value=8.9e-05 Score=60.89 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776553
No 351
>PRK14531 adenylate kinase; Provisional
Probab=97.49 E-value=0.00011 Score=62.72 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=28.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
..++++||||+|||++++.+|..++.+++ ++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHH
Confidence 35999999999999999999999987754 455544
No 352
>KOG3928|consensus
Probab=97.48 E-value=0.0035 Score=58.56 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=39.0
Q ss_pred cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 242 RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 242 rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
-| ..|+++..+.+|-..++..|++.--+.. ++..+....++--.+ +.+|+-++.+|-
T Consensus 402 pf-~pi~v~nYt~~E~~~~i~YYl~~nwl~k---------kv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 402 PF-VPIEVENYTLDEFEALIDYYLQSNWLLK---------KVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred Cc-CccccCCCCHHHHHHHHHHHHHhhHHHh---------hcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 35 4588899999999999999998654421 113344555555555 568888877774
No 353
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.48 E-value=0.001 Score=58.14 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999883
No 354
>PLN02674 adenylate kinase
Probab=97.47 E-value=0.0002 Score=63.51 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=30.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
...++|.||||+||+++|+.+|..++.+ ++++.++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR 67 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLR 67 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHH
Confidence 4569999999999999999999999865 456666553
No 355
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.47 E-value=0.00077 Score=53.71 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+++++||+|+|||+++-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999888876654
No 356
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.47 E-value=0.00083 Score=60.67 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=54.5
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEE-eccccccc-
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNI-TSSTLTSK- 154 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v-~~~~l~~~- 154 (371)
.+++++-.....+.+...+. .+...++|.||+|+|||++++++...... .++.+ +..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 34455544555555555541 22245899999999999999998776532 34443 22222110
Q ss_pred ----ccc-hHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 155 ----WYG-DSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 155 ----~~g-~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
.+. ........+...+-+..|.+|+++|+..
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1112244556666677899999999953
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=97.47 E-value=0.00093 Score=58.99 Aligned_cols=37 Identities=35% Similarity=0.357 Sum_probs=27.8
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
.+..-++|.|+||+|||+++-.++... |.++++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 344568999999999999998776543 6677776654
No 358
>PRK14530 adenylate kinase; Provisional
Probab=97.46 E-value=0.00012 Score=64.15 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..|+|.||||+|||++++.||+.++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 359999999999999999999999877653
No 359
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.46 E-value=0.00053 Score=58.57 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc-cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhh
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW-YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDV 196 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~-~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~ 196 (371)
++|+||+|||||.+|-++|+..+.|++..|.-...... +|....... +...-.=+||||-..--+. -.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~------el~~~~RiyL~~r~l~~G~-----i~ 72 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS------ELKGTRRIYLDDRPLSDGI-----IN 72 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG------GGTT-EEEES----GGG-S-------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH------HHcccceeeeccccccCCC-----cC
Confidence 78999999999999999999999999998765443322 222111100 1111113777754322111 11
Q ss_pred hhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhc-----cc-ceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRR-----LE-KRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 197 ~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~r-----f~-~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
.......|+..++.... .+. +|.-.-+...+..-..++ |. .+..++.|+.+....-.+...+++..
T Consensus 73 a~ea~~~Li~~v~~~~~-------~~~-~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 73 AEEAHERLISEVNSYSA-------HGG-LILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp HHHHHHHHHHHHHTTTT-------SSE-EEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccc-------cCc-eEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 23344455555555443 122 232333233344333333 32 34456788887666655555555544
No 360
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.46 E-value=0.0034 Score=55.33 Aligned_cols=131 Identities=11% Similarity=0.189 Sum_probs=69.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCC--eEEEecccccccc--------cc------hHHHHH----HHHHHHHH---
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTSKW--------YG------DSEKLI----RLLFLLAK--- 171 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~--~~~v~~~~l~~~~--------~g------~~~~~~----~~~~~~a~--- 171 (371)
+-.+++.|++|||||+++..+....... .+.+-+......+ +. +.+..+ ..+-+...
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3579999999999999999988765442 2222222211111 00 001111 11111111
Q ss_pred H---hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEE
Q psy6716 172 E---LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIY 248 (371)
Q Consensus 172 ~---~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~ 248 (371)
. ..+.+|++|++..- ......+..++.. + +.-++.+|.++...-.+++.++.-.+.++.
T Consensus 93 ~~k~~~~~LiIlDD~~~~--------~~k~~~l~~~~~~-------g---RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~ 154 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK--------KLKSKILRQFFNN-------G---RHYNISIIFLSQSYFHLPPNIRSNIDYFII 154 (241)
T ss_pred ccCCCCCeEEEEeCCCCc--------hhhhHHHHHHHhc-------c---cccceEEEEEeeecccCCHHHhhcceEEEE
Confidence 1 12579999997421 0011222233221 1 233678888888888999999887766665
Q ss_pred ecCCCHHHHHHHHHHH
Q psy6716 249 VPIPDQATRVSLLTIF 264 (371)
Q Consensus 249 ~~~p~~~er~~il~~~ 264 (371)
++ .+......+++.+
T Consensus 155 ~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 155 FN-NSKRDLENIYRNM 169 (241)
T ss_pred ec-CcHHHHHHHHHhc
Confidence 65 4555554444443
No 361
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.46 E-value=0.00038 Score=65.33 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
...+|+||||+|||++++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3589999999999999999998664
No 362
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.45 E-value=0.0026 Score=52.46 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=61.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEE---Eeccc----c--c-----------c---cc----cchHHHHHHHHH
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFN---ITSST----L--T-----------S---KW----YGDSEKLIRLLF 167 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~---v~~~~----l--~-----------~---~~----~g~~~~~~~~~~ 167 (371)
+.+|+++|.|||++|-.+|-.. |..+.. +.... . . + .+ ..+.....+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 7789999999999998887653 444333 22210 0 0 0 00 001111122233
Q ss_pred HHH----HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcc
Q psy6716 168 LLA----KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRL 243 (371)
Q Consensus 168 ~~a----~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf 243 (371)
..+ ......+|+||||-......--+ ...++..++.. +.++=||.|.+. .++.+..+.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~-------~~~v~~ll~~r--------p~~~evIlTGr~---~p~~l~e~A 146 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLD-------VEEVVDLLKAK--------PEDLELVLTGRN---APKELIEAA 146 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCC-------HHHHHHHHHcC--------CCCCEEEEECCC---CCHHHHHhC
Confidence 322 33346899999998775432221 23344444322 345567777764 577887776
Q ss_pred cceEEe
Q psy6716 244 EKRIYV 249 (371)
Q Consensus 244 ~~~i~~ 249 (371)
+.+-++
T Consensus 147 D~VTEm 152 (159)
T cd00561 147 DLVTEM 152 (159)
T ss_pred ceeeec
Confidence 655544
No 363
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.45 E-value=0.0005 Score=56.46 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTL 151 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l 151 (371)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999987 556666665433
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.45 E-value=0.00011 Score=63.01 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=27.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
|+|+||||+|||++|+.||..++.+++ +..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 899999999999999999999877654 444543
No 365
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00011 Score=59.62 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
|-+.|||||||||+|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6689999999999999999999999874
No 366
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.45 E-value=0.0001 Score=61.42 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
++|.||+|+|||++|+.++..++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986654
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.44 E-value=0.00012 Score=59.63 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=27.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
|.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987655
No 368
>PRK06547 hypothetical protein; Provisional
Probab=97.44 E-value=0.00014 Score=61.15 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.++.-|+|.|++|+|||++|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 33456889999999999999999999887766543
No 369
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.43 E-value=0.0004 Score=63.82 Aligned_cols=71 Identities=27% Similarity=0.352 Sum_probs=45.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEe-ccccc-------ccccchHHHHHHHHHHHHHHhCCcEEEe
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK-----SNFFNIT-SSTLT-------SKWYGDSEKLIRLLFLLAKELAPSIVFF 180 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~-~~~l~-------~~~~g~~~~~~~~~~~~a~~~~~~il~l 180 (371)
...++++.||+|+|||++++++..... ..++.+. ..++. .-...........++..+-+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 346899999999999999999998752 2333331 11111 0000111114556677777788999999
Q ss_pred ccch
Q psy6716 181 DEID 184 (371)
Q Consensus 181 Deid 184 (371)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9994
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.43 E-value=0.00079 Score=59.31 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---C------CCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---K------SNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~------~~~~~v~~~~ 150 (371)
+..-+.|+||||+|||+++..++... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458899999999999999987653 3 5667776654
No 371
>PRK14529 adenylate kinase; Provisional
Probab=97.42 E-value=0.00022 Score=62.41 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=28.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
.++|.||||+|||++++.|+..++.+++ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3889999999999999999999987754 4445443
No 372
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.41 E-value=0.0008 Score=66.53 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=23.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.++..+||.||+|||||++.|+||..
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46678999999999999999999974
No 373
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.41 E-value=0.00015 Score=63.91 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=29.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
..++|.||||+|||++|+.+|+.++.+++ +..++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdll 41 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNIL 41 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHH
Confidence 44999999999999999999999987765 444544
No 374
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.41 E-value=0.00046 Score=61.55 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
..++|.||+|+|||++++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 56999999999999999999987754
No 375
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.39 E-value=0.00018 Score=60.55 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=28.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
..++|+|++|+|||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987543
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.39 E-value=0.0048 Score=57.20 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
++.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34568899999999999999998865 3445545443
No 377
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.38 E-value=0.00019 Score=60.50 Aligned_cols=32 Identities=28% Similarity=0.682 Sum_probs=28.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
..|+|.|++|+|||++++.++..++.+++..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 46999999999999999999999999887655
No 378
>PRK13946 shikimate kinase; Provisional
Probab=97.37 E-value=0.00016 Score=61.64 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
..|+|.|.+|||||++++.+|+.++.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 56999999999999999999999999987654
No 379
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.37 E-value=0.00091 Score=63.15 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=43.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEe-ccccc-----------ccccchHHHHHHHHHHHHHHhCCcEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK-----SNFFNIT-SSTLT-----------SKWYGDSEKLIRLLFLLAKELAPSIV 178 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~-~~~l~-----------~~~~g~~~~~~~~~~~~a~~~~~~il 178 (371)
..+|++||+|+|||++++++.+... ..++.+. +.++. ...+|..........+.+-+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999987652 3344441 11211 00111111123445566666789999
Q ss_pred Eeccchh
Q psy6716 179 FFDEIDS 185 (371)
Q Consensus 179 ~lDeid~ 185 (371)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999953
No 380
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.37 E-value=0.00054 Score=63.85 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=46.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEE-ecccccc-----------cc--cchHHHHHHHHHHHHHHhCCcE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNI-TSSTLTS-----------KW--YGDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v-~~~~l~~-----------~~--~g~~~~~~~~~~~~a~~~~~~i 177 (371)
...++++.|++|+|||++++++...... .++.+ +..++.- .. .+...-....+...+-+..|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4478999999999999999999987653 23332 1111110 00 0111223456777777888999
Q ss_pred EEeccch
Q psy6716 178 VFFDEID 184 (371)
Q Consensus 178 l~lDeid 184 (371)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
No 381
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.001 Score=56.31 Aligned_cols=24 Identities=46% Similarity=0.762 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
++|+|+||+|||++|+.+|+.+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999998744
No 382
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00013 Score=59.97 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.++++|.||+|||++++.++ .++.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8998887654
No 383
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.36 E-value=0.0013 Score=58.56 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
+..-++|.|+||+|||+++..++... +.+++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 34468899999999999998876543 6777777643
No 384
>PRK14528 adenylate kinase; Provisional
Probab=97.35 E-value=0.00019 Score=61.31 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=28.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
+.+++.||||+|||++|+.++..++.+++. +.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHH
Confidence 358999999999999999999999877654 4444
No 385
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.34 E-value=0.00021 Score=64.94 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=42.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC---CeEEEe-ccccccc------cc-chHHHHHHHHHHHHHHhCCcEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS---NFFNIT-SSTLTSK------WY-GDSEKLIRLLFLLAKELAPSIVFFDEI 183 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v~-~~~l~~~------~~-g~~~~~~~~~~~~a~~~~~~il~lDei 183 (371)
...+++.||+|+|||++++++...... .++.+- ..++.-. .. .........++..+-+..|.+|++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 467999999999999999999987643 333332 1122100 00 112223445566666678999999999
Q ss_pred hh
Q psy6716 184 DS 185 (371)
Q Consensus 184 d~ 185 (371)
-.
T Consensus 207 R~ 208 (270)
T PF00437_consen 207 RD 208 (270)
T ss_dssp -S
T ss_pred CC
Confidence 53
No 386
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00034 Score=50.18 Aligned_cols=23 Identities=48% Similarity=0.626 Sum_probs=16.8
Q ss_pred cEEEEcCCCchHH-HHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKT-MLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt-~la~~la~~~ 139 (371)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556999999999 5556666554
No 387
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.34 E-value=0.0049 Score=57.02 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=52.9
Q ss_pred CcEEEeccchhhccCCCCCh-------hhhhhhHHHHHHHhhcccccCCCCCCCCEEE--EeecCCC---C--CccHHHH
Q psy6716 175 PSIVFFDEIDSMCSHRSTST-------DVTRRMKSELLCQMDGLASVSNEDPNKSVLI--LAATNFP---W--DLDEAFR 240 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v--I~ttn~~---~--~l~~~l~ 240 (371)
|.++-||++..++....-.. ...-.+...|+..+.+-.. -.+ ..+| +++|... . .++.++.
T Consensus 157 PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~----~~n-G~~v~~l~~t~~~~~~~~~~l~~~L~ 231 (309)
T PF10236_consen 157 PVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRD----FKN-GAVVTALAATSVSNAPKSPTLPVALG 231 (309)
T ss_pred ceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccc----cCC-CeEEEEEeccccccccCCccchhhhc
Confidence 67888999999987532211 1222444555555432221 112 3333 4444322 2 3444444
Q ss_pred hccc---------------------ceEEecCCCHHHHHHHHHHHHhcCCC
Q psy6716 241 RRLE---------------------KRIYVPIPDQATRVSLLTIFLQNVKV 270 (371)
Q Consensus 241 ~rf~---------------------~~i~~~~p~~~er~~il~~~~~~~~~ 270 (371)
.+-. ..+.++..+.+|-..+++.+....-+
T Consensus 232 ~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l 282 (309)
T PF10236_consen 232 GKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWL 282 (309)
T ss_pred cccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCcc
Confidence 4321 26899999999999999999987655
No 388
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.33 E-value=0.00092 Score=63.41 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
.+..+++.||.|||||++.+++...+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3467999999999999999999887643
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.33 E-value=0.0023 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 390
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.33 E-value=0.0022 Score=57.75 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~ 149 (371)
+...++++||||||||++|-.++.. .+.++++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3456899999999999999887653 25576666644
No 391
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0012 Score=54.68 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
..+..+.|+|.+|+|||++|.++...+ |..++.+|...+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 444678899999999999999999876 7788888877654
No 392
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.32 E-value=0.0012 Score=55.07 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=43.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEecccccc--------c---cc--chHHHHHHHHHHHHHHhCCcE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSSTLTS--------K---WY--GDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~l~~--------~---~~--g~~~~~~~~~~~~a~~~~~~i 177 (371)
.+...+.|.||+|+|||++.+.++..... --+.++...+.. . ++ -......+-.+..+-...|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 34466889999999999999999976421 112222211110 0 00 011223334455555667999
Q ss_pred EEeccchh
Q psy6716 178 VFFDEIDS 185 (371)
Q Consensus 178 l~lDeid~ 185 (371)
|++||-..
T Consensus 104 lllDEP~~ 111 (163)
T cd03216 104 LILDEPTA 111 (163)
T ss_pred EEEECCCc
Confidence 99999743
No 393
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.00044 Score=61.89 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=52.0
Q ss_pred ChHHhhhcCCCCcc-EEEEcCCCchHHHHHHHHHHHcCC----CeEEE-eccccc---------ccccchHHHHHHHHHH
Q psy6716 104 IPAYFDKLRRPWKG-VLLVGPPGTGKTMLAKAAATETKS----NFFNI-TSSTLT---------SKWYGDSEKLIRLLFL 168 (371)
Q Consensus 104 ~~~~~~~~~~~~~~-vLl~Gp~GtGKt~la~~la~~~~~----~~~~v-~~~~l~---------~~~~g~~~~~~~~~~~ 168 (371)
.|..+......++| ||++||+|||||+..-++-...+. +.+.+ |+-++. ..-+|.-.......++
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLr 192 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALR 192 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHH
Confidence 34444444333344 889999999999999888877654 33333 222221 1223444444556677
Q ss_pred HHHHhCCcEEEeccchhh
Q psy6716 169 LAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 169 ~a~~~~~~il~lDeid~l 186 (371)
.|-+..|.||++=|+-.+
T Consensus 193 aALReDPDVIlvGEmRD~ 210 (353)
T COG2805 193 AALREDPDVILVGEMRDL 210 (353)
T ss_pred HHhhcCCCEEEEeccccH
Confidence 777778999999998544
No 394
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.31 E-value=0.00068 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=27.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTL 151 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l 151 (371)
|+|+|+||+|||++|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 456666665444
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.31 E-value=0.0013 Score=53.60 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=42.1
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC--eEEEecc---cccccccchHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSS---TLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--~~~v~~~---~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
.+...+.|.||+|+|||+++++++...... -+.++.. .+...+.+... .+-.+..+-..+|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~--~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEK--MRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHH--HHHHHHHHHhcCCCEEEEeCCcc
Confidence 344568899999999999999999865321 1122111 01111222222 23334445555799999999753
No 396
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.30 E-value=0.00022 Score=62.25 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=27.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
|+|.||||+|||++|+.++..++.+++ +++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHHH
Confidence 789999999999999999999887655 444544
No 397
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0023 Score=56.06 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-|-|.||+||||||+.|.+|...
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999753
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.30 E-value=0.0016 Score=60.31 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=44.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEe-cccccc---cc---c------chHHHHHHHHHHHHHHhCCcE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNIT-SSTLTS---KW---Y------GDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~-~~~l~~---~~---~------g~~~~~~~~~~~~a~~~~~~i 177 (371)
....++++.||+|+|||+++++++..... ..+.+. ..++.. .. . +...-....++..+-+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34568999999999999999999977632 222221 111110 00 0 111122445666666778999
Q ss_pred EEeccch
Q psy6716 178 VFFDEID 184 (371)
Q Consensus 178 l~lDeid 184 (371)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999995
No 399
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.30 E-value=0.0019 Score=54.53 Aligned_cols=70 Identities=26% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEeccc---cccc--ccchHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSST---LTSK--WYGDSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~---l~~~--~~g~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
+...+.|.||.|+|||++++.++..... --+.++... .... +.+.. ..+-.+..+-...|.++++||--.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq--~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE--LQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH--HHHHHHHHHHhcCCCEEEEECCcc
Confidence 3456889999999999999999986422 112222211 1111 22222 233344455555799999999754
No 400
>PRK06696 uridine kinase; Validated
Probab=97.30 E-value=0.00063 Score=59.92 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~ 152 (371)
.-|.|.|++|+||||+|+.|+..+ +.+++.+++.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 458899999999999999999988 6677777766654
No 401
>PRK02496 adk adenylate kinase; Provisional
Probab=97.29 E-value=0.00022 Score=60.77 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.++|.||||+|||++|+.++..++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999877553
No 402
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.29 E-value=0.00025 Score=60.44 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=26.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
-+++.||||+|||++++.++..++... ++++++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~ 37 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDL 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHH
Confidence 488999999999999999999987654 444443
No 403
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00043 Score=48.70 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 404
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.28 E-value=0.0012 Score=56.76 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
-+.|+|++|+|||++++.++..+|.+++ ++..+...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHH
Confidence 3789999999999999999998888776 56655443
No 405
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.27 E-value=0.00015 Score=62.35 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=60.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
..++|.|+.|+|||++.+.|+...... +.... .. .... ... . ..-++.|||++.+...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d----~~~~~-----~~-kd~~---~~l-~--~~~iveldEl~~~~k~------ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSD----SINDF-----DD-KDFL---EQL-Q--GKWIVELDELDGLSKK------ 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccC----ccccC-----CC-cHHH---HHH-H--HhHheeHHHHhhcchh------
Confidence 457899999999999999996552111 11111 00 1111 111 1 1358899999988421
Q ss_pred hhhhhHHHHHHH-hhcccc---cCCCCCCCCEEEEeecCCCCCcc-HHHHhcccceEEecC
Q psy6716 196 VTRRMKSELLCQ-MDGLAS---VSNEDPNKSVLILAATNFPWDLD-EAFRRRLEKRIYVPI 251 (371)
Q Consensus 196 ~~~~~~~~ll~~-l~~~~~---~~~~~~~~~v~vI~ttn~~~~l~-~~l~~rf~~~i~~~~ 251 (371)
....+..++.. .+.+.. ......+...++|||||..+-|. +.=-||| ..+.+..
T Consensus 111 -~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 111 -DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred -hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 11222223222 111111 11123456788899999977553 3344688 5666654
No 406
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0014 Score=54.18 Aligned_cols=70 Identities=30% Similarity=0.395 Sum_probs=42.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCC--eEEEecccccc--------------cccchHHHHHHHHHHHHHHhCCcE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTS--------------KWYGDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~--~~~v~~~~l~~--------------~~~g~~~~~~~~~~~~a~~~~~~i 177 (371)
+...+.|.||+|+|||+++++++...... -+.++...+.. .+.+...+ +..+..+-...|.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~--r~~l~~~l~~~~~i 101 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ--RVALARALLLNPDL 101 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHH--HHHHHHHHhcCCCE
Confidence 44568899999999999999999865321 12333222110 01222222 22344444446899
Q ss_pred EEeccchh
Q psy6716 178 VFFDEIDS 185 (371)
Q Consensus 178 l~lDeid~ 185 (371)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999864
No 407
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.26 E-value=0.00073 Score=64.95 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeE---EE-ecccc-----cccccch-HHHHHHHHHHHHHHhCCcEEEecc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFF---NI-TSSTL-----TSKWYGD-SEKLIRLLFLLAKELAPSIVFFDE 182 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~---~v-~~~~l-----~~~~~g~-~~~~~~~~~~~a~~~~~~il~lDe 182 (371)
.|..=+|++||+|+|||++.-++.+.++.+.. .+ |+-+. ...-+.. ..-.....++..-+..|.||.+.|
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGE 335 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEec
Confidence 34344788999999999999998888765433 22 11111 1100000 011122344455566799999999
Q ss_pred chhh
Q psy6716 183 IDSM 186 (371)
Q Consensus 183 id~l 186 (371)
|-..
T Consensus 336 IRD~ 339 (500)
T COG2804 336 IRDL 339 (500)
T ss_pred cCCH
Confidence 9543
No 408
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.26 E-value=0.0012 Score=54.14 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK 154 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~ 154 (371)
..|.|+|.||+|||++|+++...+ +.+++.++...+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 458899999999999999999876 778999988776643
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.26 E-value=0.0029 Score=57.78 Aligned_cols=36 Identities=33% Similarity=0.333 Sum_probs=27.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc----C-CCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET----K-SNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~----~-~~~~~v~~~~ 150 (371)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3568899999999999999988754 3 4565665543
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.26 E-value=0.0041 Score=53.02 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHH
Q psy6716 118 VLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la 136 (371)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999988
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.26 E-value=0.001 Score=56.80 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEec-ccccc---ccc----------chHHHHHHHHHHHHHHhCCcE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITS-STLTS---KWY----------GDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~-~~l~~---~~~----------g~~~~~~~~~~~~a~~~~~~i 177 (371)
....++|.||+|+|||+++++++..... ..+.+.- .++.. ... +........++..+-+..|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3467999999999999999999987532 2222211 11100 000 011123445566666677999
Q ss_pred EEeccch
Q psy6716 178 VFFDEID 184 (371)
Q Consensus 178 l~lDeid 184 (371)
+++.|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999994
No 412
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.25 E-value=0.00027 Score=61.87 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=28.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.|+++||||+|||++|+.+|..++.+++ ++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccH
Confidence 3899999999999999999999987655 444444
No 413
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00031 Score=62.26 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
+.-++|.|+||+|||++|+.++..++.+ +++++++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 3568899999999999999999998765 567766653
No 414
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.25 E-value=0.0034 Score=55.21 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~ 150 (371)
+...+++.|+||+|||+++..++.. .+.++++++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3456889999999999999887654 266777776543
No 415
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.25 E-value=0.00052 Score=64.52 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=43.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC----CeEEE-eccccc---------ccccchHHHHHHHHHHHHHHhCCcEEE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS----NFFNI-TSSTLT---------SKWYGDSEKLIRLLFLLAKELAPSIVF 179 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~----~~~~v-~~~~l~---------~~~~g~~~~~~~~~~~~a~~~~~~il~ 179 (371)
+...++|.||+|+|||++.+++...... .++.+ +..++. ..-.|.........+..+-...|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3456899999999999999999886542 23332 111111 001121112234455556667899999
Q ss_pred eccch
Q psy6716 180 FDEID 184 (371)
Q Consensus 180 lDeid 184 (371)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 416
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.23 E-value=0.00024 Score=56.31 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~ 139 (371)
|+|.|+||||||++|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 417
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.23 E-value=0.0025 Score=57.87 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEec
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITS 148 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~ 148 (371)
.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344568899999999999999876653 566766665
No 418
>PRK04328 hypothetical protein; Provisional
Probab=97.21 E-value=0.003 Score=56.61 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITS 148 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~ 148 (371)
+...+|++||||+|||+++..++.+ .+.+.++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4466899999999999998875543 2456666654
No 419
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.21 E-value=0.0006 Score=63.12 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.+...|+|+|++|||||++++.++..++.+|+.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45567999999999999999999999999998543
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.20 E-value=0.0007 Score=62.50 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=40.5
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+++.|+++.+.++-+++. ...++.+...+-++|.||+|+|||++++.+.+.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk------~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFK------SAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHH------HHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999988772 22233334445688999999999999999988653
No 421
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.19 E-value=0.017 Score=47.46 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=76.7
Q ss_pred EcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhh
Q psy6716 121 VGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRM 200 (371)
Q Consensus 121 ~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~ 200 (371)
.+.+|||||+++.+|++.++- +-.+.-.++.++ .....+..+..........++|.|-=... .+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~-----------~re 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ-----------KRE 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch-----------HHH
Confidence 578999999999999999883 333455555443 34455555566664445668888855444 222
Q ss_pred HHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--------cccc--eEEecCCCHHHHHHHHHHHHhcCC
Q psy6716 201 KSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--------RLEK--RIYVPIPDQATRVSLLTIFLQNVK 269 (371)
Q Consensus 201 ~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--------rf~~--~i~~~~p~~~er~~il~~~~~~~~ 269 (371)
-.++...+....... -....++.+||-.=..+...+.+.+ |=+. .|.....+...-..|++.++..+.
T Consensus 70 R~ql~~~~~~~~~~y-l~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 70 RKQLFEDVSQLKPDY-LPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHHhcccc-cccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 334444443322110 0123466777665433332233322 4444 344455567788889999988764
No 422
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0034 Score=58.74 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=58.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcC--CCeEEEeccccccccc--------------chHHHHHHHHHHHHHHhCCc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETK--SNFFNITSSTLTSKWY--------------GDSEKLIRLLFLLAKELAPS 176 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~--~~~~~v~~~~l~~~~~--------------g~~~~~~~~~~~~a~~~~~~ 176 (371)
-+..-+||-|.||.|||+|.-.++..+. .++++|+..+-..... --.+..+..+........|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 4555689999999999999988877652 3788988766443211 12345567788888888999
Q ss_pred EEEeccchhhccCCC
Q psy6716 177 IVFFDEIDSMCSHRS 191 (371)
Q Consensus 177 il~lDeid~l~~~~~ 191 (371)
+++||-|+.+....-
T Consensus 171 lvVIDSIQT~~s~~~ 185 (456)
T COG1066 171 LVVIDSIQTLYSEEI 185 (456)
T ss_pred EEEEeccceeecccc
Confidence 999999999987653
No 423
>PRK14527 adenylate kinase; Provisional
Probab=97.17 E-value=0.00032 Score=60.17 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
+.-++++||||+|||++|+.++..++...+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 356999999999999999999999887654
No 424
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.17 E-value=0.003 Score=54.09 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc
Q psy6716 164 RLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 164 ~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 213 (371)
+-++..|-...|-++++||--+.+ ...+..+.+..|..+..
T Consensus 144 RVAIARALaM~P~vmLFDEPTSAL---------DPElv~EVL~vm~~LA~ 184 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSAL---------DPELVGEVLDVMKDLAE 184 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccC---------CHHHHHHHHHHHHHHHH
Confidence 334555556679999999986653 45677778887776654
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.16 E-value=0.001 Score=53.13 Aligned_cols=30 Identities=30% Similarity=0.227 Sum_probs=25.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999998764
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.012 Score=56.17 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=25.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
..++|.||+|+|||+++..+|... +..+..+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 458899999999999999998653 3344444443
No 427
>PRK13764 ATPase; Provisional
Probab=97.15 E-value=0.00073 Score=67.37 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=41.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEE-eccccc-----ccccchHHHHHHHHHHHHHHhCCcEEEeccc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNI-TSSTLT-----SKWYGDSEKLIRLLFLLAKELAPSIVFFDEI 183 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v-~~~~l~-----~~~~g~~~~~~~~~~~~a~~~~~~il~lDei 183 (371)
....++|++||||+||||++++++..... .+..+ ++.++. ..+.. ...........+-+..|.++++||+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEi 333 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEM 333 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCC
Confidence 33467999999999999999999987643 23232 111211 11110 0000112222223556999999998
Q ss_pred hh
Q psy6716 184 DS 185 (371)
Q Consensus 184 d~ 185 (371)
-.
T Consensus 334 Rd 335 (602)
T PRK13764 334 RK 335 (602)
T ss_pred CC
Confidence 54
No 428
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.14 E-value=0.0043 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=18.4
Q ss_pred ccEEEEcCCCchHHH-HHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTM-LAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~-la~~la~~~ 139 (371)
..+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555443
No 429
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.14 E-value=0.0029 Score=58.52 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=44.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEe-ccccccc------ccchHHHHHHHHHHHHHHhCCcEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK-----SNFFNIT-SSTLTSK------WYGDSEKLIRLLFLLAKELAPSIVFFDE 182 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~-~~~l~~~------~~g~~~~~~~~~~~~a~~~~~~il~lDe 182 (371)
..++++.|++|+|||++++++..... ..++.+- ..++... +.....-....+...+-+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 46799999999999999999988752 2333321 2222100 0011112244566667777899999999
Q ss_pred ch
Q psy6716 183 ID 184 (371)
Q Consensus 183 id 184 (371)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 430
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.14 E-value=0.0051 Score=53.12 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.4
Q ss_pred ccEEEEcCCCchHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la 136 (371)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 431
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.0061 Score=52.42 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+-++|.||+|+|||+.+--+|..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 568999999999999888777654
No 432
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.11 E-value=0.00034 Score=57.57 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=26.9
Q ss_pred EEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 120 LVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 120 l~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
|.||||+|||++|+.||...+. .++++.++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999865 46666666543
No 433
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.004 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
++..+=|.|++||||||++|+++..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3455779999999999999999864
No 434
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.10 E-value=0.0034 Score=53.70 Aligned_cols=74 Identities=27% Similarity=0.370 Sum_probs=40.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-------------CCCeEEEeccccccc----c---cc-----h------------
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-------------KSNFFNITSSTLTSK----W---YG-----D------------ 158 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-------------~~~~~~v~~~~l~~~----~---~g-----~------------ 158 (371)
.-++|+||||+|||+++-.++... +.++++++...-... + .+ .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348899999999999999887643 235666655432110 0 00 0
Q ss_pred ------------HHHHHHHHHHHHHH-hCCcEEEeccchhhccC
Q psy6716 159 ------------SEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 159 ------------~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~ 189 (371)
....+..+.+.+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123334444455 46899999999999876
No 435
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.10 E-value=0.0016 Score=60.32 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEE-ecccccc---c---ccchHHHHHHHHHHHHHHhCCcEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNI-TSSTLTS---K---WYGDSEKLIRLLFLLAKELAPSIVFFD 181 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v-~~~~l~~---~---~~g~~~~~~~~~~~~a~~~~~~il~lD 181 (371)
...++++.|++|+|||+++++++... ...++.+ +..++.- . +.....-....++..+-+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 44789999999999999999999763 1223322 1112210 0 000111235566777778889999999
Q ss_pred cch
Q psy6716 182 EID 184 (371)
Q Consensus 182 eid 184 (371)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 994
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.10 E-value=0.0052 Score=62.41 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=85.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc--CCCeEEEeccccccc--------------c---cch-------------HHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET--KSNFFNITSSTLTSK--------------W---YGD-------------SEKLI 163 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~--~~~~~~v~~~~l~~~--------------~---~g~-------------~~~~~ 163 (371)
+-++|.-|.|.|||+++-..+... +..+.-+++++--.. + .++ ....+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999987532 333333333221100 0 011 12234
Q ss_pred HHHHHHHH-HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhc
Q psy6716 164 RLLFLLAK-ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRR 242 (371)
Q Consensus 164 ~~~~~~a~-~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~r 242 (371)
..++.... ...|..|+|||.+.+. +......+..|++.. +.++.+|.+|...-.+.-+-.|-
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~------~~~l~~~l~fLl~~~-----------P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS------DPALHEALRFLLKHA-----------PENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC------cccHHHHHHHHHHhC-----------CCCeEEEEEeccCCCCcccceee
Confidence 45555444 4468899999999982 222333344444433 55777777776543332211110
Q ss_pred ccceEEec----CCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHH
Q psy6716 243 LEKRIYVP----IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSA 302 (371)
Q Consensus 243 f~~~i~~~----~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~ 302 (371)
=+..+++. ..+.+|-.+++...... . .+..++..+-.+++|+..+
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~--------------Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSL-P--------------LDAADLKALYDRTEGWAAA 229 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCC-C--------------CChHHHHHHHhhcccHHHH
Confidence 01222222 24667777777655421 1 3456788888889887543
No 437
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.10 E-value=0.009 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+..-+.|.||+|+|||||.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445688999999999999999964
No 438
>PRK08233 hypothetical protein; Provisional
Probab=97.08 E-value=0.00062 Score=57.70 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcC-CCeEEEecc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETK-SNFFNITSS 149 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~-~~~~~v~~~ 149 (371)
-|.|.|+||+||||+|+.|+..++ .+++..+..
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 477899999999999999999885 445555443
No 439
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.08 E-value=0.0025 Score=65.77 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=56.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---C--CCeEEEeccccc----ccccchHHHHHHHHHHHH----------HHhCCc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---K--SNFFNITSSTLT----SKWYGDSEKLIRLLFLLA----------KELAPS 176 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~--~~~~~v~~~~l~----~~~~g~~~~~~~~~~~~a----------~~~~~~ 176 (371)
+-++|+|+||||||++++++...+ + .+++-+.++.-. ....|.....+..++... ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999986654 3 333333322111 111111112222222210 012357
Q ss_pred EEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCcc
Q psy6716 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD 236 (371)
Q Consensus 177 il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~ 236 (371)
+|++||+..+ .......|+..+. ...++++++=.++...+.
T Consensus 419 llIvDEaSMv----------d~~~~~~Ll~~~~---------~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 419 LLIVDESSMM----------DTWLALSLLAALP---------DHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEEeccccC----------CHHHHHHHHHhCC---------CCCEEEEECccccccCCC
Confidence 9999999877 4555666666542 133566666666554443
No 440
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.0029 Score=57.11 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=56.9
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKL 162 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 162 (371)
+++=.+++++.+.+.. +-+..|..+.||.|.+|+||++++|..|--.+..++.+..+.-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~----------RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARIS----------RVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHH----------HHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHH----------HHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 3444566666666555 44456778899999999999999999998888888887654311 12234455
Q ss_pred HHHHHHHHHHh-CCcEEEeccch
Q psy6716 163 IRLLFLLAKEL-APSIVFFDEID 184 (371)
Q Consensus 163 ~~~~~~~a~~~-~~~il~lDeid 184 (371)
++.++..|-.. .+.+++++|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 66666665543 46777776643
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.08 E-value=0.00049 Score=57.40 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
|.|+|++|||||+|++.|+.. +.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 77765
No 442
>PRK04182 cytidylate kinase; Provisional
Probab=97.08 E-value=0.00054 Score=57.90 Aligned_cols=28 Identities=32% Similarity=0.600 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
|+|.|++|||||++++.+|..++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999988764
No 443
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.0014 Score=61.76 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..++|.||+|+|||++++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35699999999999999999998754
No 444
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0093 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999863
No 445
>PRK01184 hypothetical protein; Provisional
Probab=97.07 E-value=0.00052 Score=58.45 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=23.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
-|+|+||||+||||+++ ++++.+.+++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~ 30 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVV 30 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEE
Confidence 47899999999999998 78888877654
No 446
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.07 E-value=0.0016 Score=64.02 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=41.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCC---CeEEE-eccccccc-----ccc-hHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKS---NFFNI-TSSTLTSK-----WYG-DSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v-~~~~l~~~-----~~g-~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
-++++||+|+|||++..++...... .++.+ ++.++.-. .+. ........+.+.+-+..|.+|++.|+-.
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4789999999999999987776542 34443 11111100 011 1111233455555667899999999953
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.07 E-value=0.0041 Score=61.32 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=51.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc------c----------------------hHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY------G----------------------DSEKL 162 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~------g----------------------~~~~~ 162 (371)
+...+|+.||||+|||+++-.++... +.++++++..+-...+. | ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 44569999999999999998877643 55677765544321111 0 11445
Q ss_pred HHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 163 IRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 163 ~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
+..+........|.+|+||-+..+..
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 56666777777899999999998753
No 448
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.06 E-value=0.016 Score=51.50 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q psy6716 118 VLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~ 138 (371)
-+|.||||+|||+++..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998764
No 449
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.06 E-value=0.0014 Score=61.28 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=45.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEE-ecccccc--c------c----cchHHHHHHHHHHHHHHhCCcE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNI-TSSTLTS--K------W----YGDSEKLIRLLFLLAKELAPSI 177 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v-~~~~l~~--~------~----~g~~~~~~~~~~~~a~~~~~~i 177 (371)
....++++.||+|+|||++++++...... .++.+ +..++.- . + .+...-....++..+-+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999987643 23332 1111110 0 0 0111122445667777778999
Q ss_pred EEeccch
Q psy6716 178 VFFDEID 184 (371)
Q Consensus 178 l~lDeid 184 (371)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999994
No 450
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.04 E-value=0.00078 Score=57.63 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
|.|+|++|||||++++.++...+.+++ ++..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 689999999999999999988666654 55555433
No 451
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.04 E-value=0.00084 Score=59.03 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=17.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+++||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997776665554
No 452
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.04 E-value=0.00061 Score=57.10 Aligned_cols=28 Identities=36% Similarity=0.661 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
|.|+|++|+|||++|+.+++.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988754
No 453
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.03 E-value=0.0023 Score=55.24 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc-CCCeEEEeccccccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET-KSNFFNITSSTLTSK 154 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~-~~~~~~v~~~~l~~~ 154 (371)
.|.-+++.|+||+|||++++.+...+ +..++.++...+...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34678899999999999999999888 778889998877644
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.03 E-value=0.0028 Score=53.43 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=28.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
+.-+.|.|+||+|||++++.++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3468899999999999999999886 34566666544
No 455
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.011 Score=57.00 Aligned_cols=35 Identities=40% Similarity=0.393 Sum_probs=26.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~ 150 (371)
..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 568899999999999988887643 34566666544
No 456
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0028 Score=53.32 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
+++.|+||+|||++++.++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6889999999999999988764 55666676653
No 457
>PF13479 AAA_24: AAA domain
Probab=97.01 E-value=0.0017 Score=56.80 Aligned_cols=20 Identities=50% Similarity=0.884 Sum_probs=18.3
Q ss_pred ccEEEEcCCCchHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAA 135 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~l 135 (371)
..++|||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46999999999999999888
No 458
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.01 E-value=0.01 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+..+++||.|+|||++.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999753
No 459
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.01 E-value=0.0035 Score=59.10 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC------CCeEEE-eccccccc------------ccchHHHHHHHHHHHHHHhC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK------SNFFNI-TSSTLTSK------------WYGDSEKLIRLLFLLAKELA 174 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~------~~~~~v-~~~~l~~~------------~~g~~~~~~~~~~~~a~~~~ 174 (371)
+...++++||+|+|||++++++..... ..++.+ ++.++.-. .++..........+.+-...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 445699999999999999999987752 223332 11111100 00100112333444455667
Q ss_pred CcEEEeccch
Q psy6716 175 PSIVFFDEID 184 (371)
Q Consensus 175 ~~il~lDeid 184 (371)
|.++++.|+-
T Consensus 213 Pd~i~vGEiR 222 (358)
T TIGR02524 213 PHAILVGEAR 222 (358)
T ss_pred CCEEeeeeeC
Confidence 9999999984
No 460
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.00 E-value=0.0024 Score=66.08 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=40.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----cchHHHHHHHHHHH-H----HHhCCcEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW----YGDSEKLIRLLFLL-A----KELAPSIVFFDEI 183 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~----~g~~~~~~~~~~~~-a----~~~~~~il~lDei 183 (371)
.-++|.|+||||||++++++...+ +..++.+-++...... .|.....+..+... . ......+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999987543 5555555433322111 11111112222111 0 1123579999999
Q ss_pred hhh
Q psy6716 184 DSM 186 (371)
Q Consensus 184 d~l 186 (371)
..+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 777
No 461
>PRK14526 adenylate kinase; Provisional
Probab=97.00 E-value=0.0007 Score=58.96 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.++|+||||+|||++++.++..++.++ +++.++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 388999999999999999999987664 4455543
No 462
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.99 E-value=0.032 Score=54.78 Aligned_cols=109 Identities=14% Similarity=0.268 Sum_probs=74.9
Q ss_pred CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCH
Q psy6716 175 PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQ 254 (371)
Q Consensus 175 ~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~ 254 (371)
|++++|.|++.++.+ .. ..+.+..+...+.. ..+.+|+.+.+ ..+++.+.+-+ .++.+|+|+.
T Consensus 82 ~~~~vl~d~h~~~~~----~~-~~r~l~~l~~~~~~---------~~~~~i~~~~~--~~~p~el~~~~-~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLND----IS-ISRKLRNLSRILKT---------QPKTIIIIASE--LNIPKELKDLI-TVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcc----hH-HHHHHHHHHHHHHh---------CCCEEEEEcCC--CCCCHHHHhce-eEEeecCcCH
Confidence 689999999999732 11 12222222222211 22344444443 36788887755 7789999999
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 255 ~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+|+..+++.+....+.. .++.+++.+++.+.|+|..+++.++..+.
T Consensus 145 ~ei~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 145 SEIKKELTRLIKSLNIK------------IDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999998887644432 45667899999999999999999988653
No 463
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.99 E-value=0.0051 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++..+.|.||+|+|||++++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344568899999999999999999764
No 464
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.97 E-value=0.17 Score=48.23 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCccEEEEcCCCchHHHHH--HHHHHHcCCCeEEEeccccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLA--KAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la--~~la~~~~~~~~~v~~~~l~ 152 (371)
+.--|+++||.||||+.++ +++... ..++.|+|..+.
T Consensus 16 ~~TFIvV~GPrGSGK~elV~d~~L~~r--~~vL~IDC~~i~ 54 (431)
T PF10443_consen 16 PNTFIVVQGPRGSGKRELVMDHVLKDR--KNVLVIDCDQIV 54 (431)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHhCC--CCEEEEEChHhh
Confidence 3345889999999999999 556553 347888887665
No 465
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.96 E-value=0.007 Score=56.54 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=26.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~ 150 (371)
.-+.|+||||||||.++..+|-.. +..+++|+...
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 447799999999999999876322 24677887654
No 466
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0058 Score=51.35 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=23.2
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+...+.|.||+|+|||++.+.++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344568999999999999999999864
No 467
>PRK10436 hypothetical protein; Provisional
Probab=96.95 E-value=0.0026 Score=61.92 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCC---CeEEE-eccccccc-----ccc-hHHHHHHHHHHHHHHhCCcEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKS---NFFNI-TSSTLTSK-----WYG-DSEKLIRLLFLLAKELAPSIVFFDEI 183 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~---~~~~v-~~~~l~~~-----~~g-~~~~~~~~~~~~a~~~~~~il~lDei 183 (371)
+..-+|++||+|+|||++..++...... .++.+ |+.++.-. -++ ........+.+.+-+..|.+|++.||
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEI 296 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEI 296 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCC
Confidence 4355889999999999999887666543 33333 12121110 011 11122445556666678999999999
Q ss_pred hh
Q psy6716 184 DS 185 (371)
Q Consensus 184 d~ 185 (371)
-.
T Consensus 297 RD 298 (462)
T PRK10436 297 RD 298 (462)
T ss_pred CC
Confidence 53
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.95 E-value=0.0067 Score=53.55 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEec
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITS 148 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~ 148 (371)
.+...++|.||||+|||+++..++.. .+.+++.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34456999999999999999876543 2445666554
No 469
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.95 E-value=0.0056 Score=56.98 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~ 150 (371)
..-++|+||||+|||.++-.++... +..++++++..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4457899999999999999988653 23677887655
No 470
>PLN02199 shikimate kinase
Probab=96.94 E-value=0.00091 Score=60.48 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=29.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
..+|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 467999999999999999999999999987544
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.93 E-value=0.00079 Score=57.49 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=24.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999988776543
No 472
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.93 E-value=0.0014 Score=61.91 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=21.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
-+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 473
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.92 E-value=0.0024 Score=59.53 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=28.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
..+.|.|++|+|||+|++.++...+.+++.--.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 569999999999999999999998888765433
No 474
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.92 E-value=0.0045 Score=57.25 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHH
Q psy6716 87 LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLL 166 (371)
Q Consensus 87 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 166 (371)
..+.+..+++.+...+... .....-++++|+.|+|||++.+.+...+|.....+..+...... +. .-
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~ 120 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HR 120 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CC
Confidence 3456666777665443221 12335689999999999999999988887654332222222111 11 02
Q ss_pred HHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-------CCCCCCCCEEEEeecCCCCCc---c
Q psy6716 167 FLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-------SNEDPNKSVLILAATNFPWDL---D 236 (371)
Q Consensus 167 ~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~v~vI~ttn~~~~l---~ 236 (371)
|..+.....-+++.||++.-.. . .. ..+..|-+.... ....-.....+|.+||..-.+ +
T Consensus 121 f~~a~l~gk~l~~~~E~~~~~~---~----~~----~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~ 189 (304)
T TIGR01613 121 FGLARLEGKRAVIGDEVQKGYR---D----DE----STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFD 189 (304)
T ss_pred chhhhhcCCEEEEecCCCCCcc---c----cH----HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCC
Confidence 4444444556888999863200 0 11 122222211100 000112245677788876444 5
Q ss_pred HHHHhcccceEEec
Q psy6716 237 EAFRRRLEKRIYVP 250 (371)
Q Consensus 237 ~~l~~rf~~~i~~~ 250 (371)
.++.||+ .+|.++
T Consensus 190 ~a~~RR~-~vi~f~ 202 (304)
T TIGR01613 190 GGIKRRL-RIIPFT 202 (304)
T ss_pred hhheeeE-EEEecc
Confidence 7888888 566654
No 475
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.91 E-value=0.0011 Score=56.12 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-++|.|++|+|||++++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999998875
No 476
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.91 E-value=0.00084 Score=61.93 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=26.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
-+++.|+||||||++|+.+++.+. .+..++...+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 478899999999999999999983 3344454443
No 477
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.91 E-value=0.0055 Score=56.66 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---------cCCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---------TKSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---------~~~~~~~v~~~~ 150 (371)
+..-+.|+||||+|||.++..++-. .+..+++++...
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3345779999999999999887642 234678887654
No 478
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.90 E-value=0.016 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..++|.|++|+|||++.+++...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999998865
No 479
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.90 E-value=0.0051 Score=52.17 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+...+.|.||+|+|||++++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999864
No 480
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.018 Score=58.09 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccc-------------ccCCCCCCCCEEEEeecCCC-----CCc
Q psy6716 174 APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLA-------------SVSNEDPNKSVLILAATNFP-----WDL 235 (371)
Q Consensus 174 ~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~~~~~~~~~v~vI~ttn~~-----~~l 235 (371)
.++||||||+..| ....+..+|+.+.... .......+.++.+|+..|.. ..+
T Consensus 225 ngGVLiIdei~lL----------~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~ 294 (647)
T COG1067 225 NGGVLIIDEIGLL----------AQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEP 294 (647)
T ss_pred cCcEEEEEhhhhh----------CcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhccc
Confidence 3899999999999 4455666666654321 11112345677788887765 234
Q ss_pred cHHHHhcccceEEe--cCC-CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHH---HccC------CCHHH
Q psy6716 236 DEAFRRRLEKRIYV--PIP-DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE---RLEG------YSSAD 303 (371)
Q Consensus 236 ~~~l~~rf~~~i~~--~~p-~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~~~g------~s~~d 303 (371)
++.+..-|....++ +.| +.+.|.++++.+++....+... .-.....+..|.+ +..| .+++|
T Consensus 295 ~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~i-------p~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rd 367 (647)
T COG1067 295 DRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNI-------PHLDKDAVEELIREAARRAGDQNKLTLRLRD 367 (647)
T ss_pred CHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCC-------CCCCHHHHHHHHHHHHHhccccceeccCHHH
Confidence 55555545444555 667 7889999998888755432110 0011112232222 2212 46799
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 304 ITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 304 i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
|.++++.|...+.... ...|+.+|+..|+++.++
T Consensus 368 l~~lv~~A~~ia~~~~-----------------~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 368 LGNLVREAGDIAVSEG-----------------RKLITAEDVEEALQKREL 401 (647)
T ss_pred HHHHHHHhhHHHhcCC-----------------cccCcHHHHHHHHHhhhh
Confidence 9999998877666542 237999999999999644
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.87 E-value=0.012 Score=52.99 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=28.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
.....+|++|+||||||+++..++... |.+++.|+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 344669999999999999998876543 66777776544
No 482
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0063 Score=51.22 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+|||++++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999998754
No 483
>KOG1808|consensus
Probab=96.86 E-value=0.0014 Score=71.88 Aligned_cols=134 Identities=22% Similarity=0.285 Sum_probs=79.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc--cccc----hHH--HHHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS--KWYG----DSE--KLIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~--~~~g----~~~--~~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
++||.||.|+|||.+++.+|...+..+++++-..... .|+| ... -..+..........++.+++|+++..
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla-- 519 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA-- 519 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc--
Confidence 5999999999999999999999999999886544321 1222 100 00111111222335889999999876
Q ss_pred CCCCChhhhhhhHHHHHHHhhcccccC----CC--CCCCCEEEEeecCCCC------CccHHHHhcccceEEecCCCHHH
Q psy6716 189 HRSTSTDVTRRMKSELLCQMDGLASVS----NE--DPNKSVLILAATNFPW------DLDEAFRRRLEKRIYVPIPDQAT 256 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~ll~~l~~~~~~~----~~--~~~~~v~vI~ttn~~~------~l~~~l~~rf~~~i~~~~p~~~e 256 (371)
...++..|.+.++...... .+ ......++++|-|.+. .+..+++.||.. +++..-..++
T Consensus 520 --------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e-~~f~~~~e~e 590 (1856)
T KOG1808|consen 520 --------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIE-LHFDDIGEEE 590 (1856)
T ss_pred --------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchh-hhhhhcCchh
Confidence 5667777777776522111 01 2233456667777663 344566667733 4443333333
Q ss_pred HHHHH
Q psy6716 257 RVSLL 261 (371)
Q Consensus 257 r~~il 261 (371)
...++
T Consensus 591 ~~~i~ 595 (1856)
T KOG1808|consen 591 LEEIL 595 (1856)
T ss_pred hhhhh
Confidence 33333
No 484
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.86 E-value=0.0036 Score=66.05 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=56.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecccccccc----cchHHHHHHHHHHHHH-----HhCCcEEEeccch
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKW----YGDSEKLIRLLFLLAK-----ELAPSIVFFDEID 184 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~~----~g~~~~~~~~~~~~a~-----~~~~~il~lDeid 184 (371)
-++|.|++|||||++.+++... .|..++-+-++.....- .|-....+..++.... .....+|+|||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4779999999999998876543 35566555443322211 1222233333321111 1134699999997
Q ss_pred hhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc
Q psy6716 185 SMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235 (371)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l 235 (371)
.+ .......|+..... ....+++|+=.++...+
T Consensus 444 Mv----------~~~~m~~LL~~a~~--------~garvVLVGD~~QLpsV 476 (988)
T PRK13889 444 MV----------GTRQLERVLSHAAD--------AGAKVVLVGDPQQLQAI 476 (988)
T ss_pred cC----------CHHHHHHHHHhhhh--------CCCEEEEECCHHHcCCC
Confidence 76 44455566654421 13366777766655444
No 485
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.85 E-value=0.0086 Score=61.47 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=46.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHH---HcCCCeEEEeccccccc------------c----cchHHHHHHHHHHHHHHhCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAAT---ETKSNFFNITSSTLTSK------------W----YGDSEKLIRLLFLLAKELAP 175 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~---~~~~~~~~v~~~~l~~~------------~----~g~~~~~~~~~~~~a~~~~~ 175 (371)
..-++|+||||||||+++..++. ..+..+++++...-... + ....+.....+-...+...+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 45588999999999999976543 34667777766542210 0 01122333333333444468
Q ss_pred cEEEeccchhhcc
Q psy6716 176 SIVFFDEIDSMCS 188 (371)
Q Consensus 176 ~il~lDeid~l~~ 188 (371)
.+|+||-+..+.+
T Consensus 140 ~LVVIDSI~aL~~ 152 (790)
T PRK09519 140 DIVVIDSVAALVP 152 (790)
T ss_pred eEEEEcchhhhcc
Confidence 8999999999986
No 486
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.013 Score=53.00 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+-|.||+|+|||++.|.||...
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcC
Confidence 458899999999999999999643
No 487
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.84 E-value=0.0084 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=28.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~ 150 (371)
..-++|+||||+|||+++-.+|... +..+++|+...
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3447899999999999999987653 23778887665
No 488
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.83 E-value=0.0033 Score=56.82 Aligned_cols=68 Identities=25% Similarity=0.269 Sum_probs=35.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccc---ccc-chHHHHHHH----HHHHHHHhCCcEEEeccchhh
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTS---KWY-GDSEKLIRL----LFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~---~~~-g~~~~~~~~----~~~~a~~~~~~il~lDeid~l 186 (371)
|+|+|-||+|||++|+.|+..+ +..+..++-..+.- .|. ...++..+. ....+- ....+|++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7899999999999999998864 55666666444431 111 122333333 223322 23479999999877
No 489
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.0092 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999886
No 490
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNF 143 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~ 143 (371)
.-+++.|+||+|||++|+.++..++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4589999999999999999999987754
No 491
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.82 E-value=0.01 Score=49.57 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=23.1
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+...+.|.||+|+|||++++.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999999864
No 492
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.81 E-value=0.0011 Score=58.51 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 493
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.02 Score=53.81 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 86 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+.+.+...+.+.+...+..+..+. ..++..++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 346666666666644332222111 1334668999999999999999988755 4445455544
No 494
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.81 E-value=0.0019 Score=56.15 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=28.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC-CeEEEecccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS-NFFNITSSTL 151 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~-~~~~v~~~~l 151 (371)
+.-|.|.|++||||||+++.|+..++. .+..++...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 356889999999999999999998843 4444554443
No 495
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.018 Score=49.34 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=64.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccc---------------------------------ccccchHHH
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLT---------------------------------SKWYGDSEK 161 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~---------------------------------~~~~g~~~~ 161 (371)
+++.|+.|||||.++..++--. +....+++...-. .........
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 7788999999999998887422 2222222211000 000123455
Q ss_pred HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh
Q psy6716 162 LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR 241 (371)
Q Consensus 162 ~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~ 241 (371)
.+..+.+..+.+...|++||-+..++... .......++..+..+.. ..+ +||.|.| |+.++++..-
T Consensus 111 ~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d------~gK-vIilTvh-p~~l~e~~~~ 176 (235)
T COG2874 111 LLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSD------LGK-VIILTVH-PSALDEDVLT 176 (235)
T ss_pred HHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHh------CCC-EEEEEeC-hhhcCHHHHH
Confidence 56667777777778999999998886432 12223344444444443 223 3444544 6788877666
Q ss_pred cc
Q psy6716 242 RL 243 (371)
Q Consensus 242 rf 243 (371)
|+
T Consensus 177 ri 178 (235)
T COG2874 177 RI 178 (235)
T ss_pred HH
Confidence 54
No 496
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.80 E-value=0.0014 Score=55.66 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=27.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
|.|+|++|+|||++++.+++ +|.+++ ++..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHHHh
Confidence 68999999999999999998 776654 55555433
No 497
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.79 E-value=0.014 Score=49.18 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+|||++.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34568899999999999999999764
No 498
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.78 E-value=0.0047 Score=55.55 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=54.3
Q ss_pred ccEE-EEcCCCchHHHHHHHHHHHc---------CCCeEEEecccc-ccc--------cc------------------ch
Q psy6716 116 KGVL-LVGPPGTGKTMLAKAAATET---------KSNFFNITSSTL-TSK--------WY------------------GD 158 (371)
Q Consensus 116 ~~vL-l~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~l-~~~--------~~------------------g~ 158 (371)
..|. |+||||+|||.+|-.+|-.. +..+++++...- ... +. .+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHH
Confidence 3444 99999999999998887543 335888877642 110 00 01
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC---hhhhhhhHHHHHHHhhcccc
Q psy6716 159 SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS---TDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~---~~~~~~~~~~ll~~l~~~~~ 213 (371)
-...+..+........-.+|+||-|-.++...-.+ .......+..++..|..+..
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~ 175 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLAR 175 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHH
Confidence 11112222222333456799999999987642211 12223455555555554443
No 499
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.78 E-value=0.0018 Score=55.72 Aligned_cols=24 Identities=58% Similarity=0.721 Sum_probs=18.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.+.||.|||||++|-+.|.+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 348899999999999999988654
No 500
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.78 E-value=0.0016 Score=55.19 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~ 152 (371)
|.|.|+||+|||++|+.++..+. .++..++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 68999999999999999999863 456666655544
Done!