Query psy6716
Match_columns 371
No_of_seqs 318 out of 3385
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 16:36:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.8E-50 1.3E-54 375.4 24.4 260 72-367 138-404 (405)
2 4b4t_H 26S protease regulatory 100.0 3.7E-48 1.3E-52 366.1 24.2 259 74-368 201-467 (467)
3 3cf2_A TER ATPase, transitiona 100.0 1.9E-50 6.5E-55 408.4 8.2 330 14-371 402-762 (806)
4 4b4t_I 26S protease regulatory 100.0 1.3E-48 4.5E-53 365.7 19.4 252 74-361 174-432 (437)
5 4b4t_M 26S protease regulatory 100.0 1.6E-47 5.5E-52 363.1 25.8 249 74-358 173-428 (434)
6 4b4t_L 26S protease subunit RP 100.0 1.1E-47 3.7E-52 364.6 23.1 258 73-369 172-436 (437)
7 4b4t_K 26S protease regulatory 100.0 9.4E-47 3.2E-51 357.7 23.8 250 74-359 164-422 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.2E-43 4E-48 329.1 28.7 281 74-371 4-318 (322)
9 3eie_A Vacuolar protein sortin 100.0 3.5E-43 1.2E-47 326.5 24.7 283 72-371 8-317 (322)
10 2qp9_X Vacuolar protein sortin 100.0 2.9E-42 1E-46 323.9 26.9 285 70-371 39-350 (355)
11 2zan_A Vacuolar protein sortin 100.0 1.7E-41 6E-46 327.6 23.7 286 69-371 121-440 (444)
12 3cf0_A Transitional endoplasmi 100.0 1.4E-41 4.6E-46 312.7 21.7 281 72-371 5-300 (301)
13 3cf2_A TER ATPase, transitiona 100.0 5.1E-42 1.7E-46 347.0 17.5 262 76-356 198-463 (806)
14 3d8b_A Fidgetin-like protein 1 100.0 2.6E-39 8.8E-44 304.4 24.9 289 62-371 64-353 (357)
15 3b9p_A CG5977-PA, isoform A; A 100.0 6.7E-39 2.3E-43 294.4 25.1 287 65-371 4-291 (297)
16 3vfd_A Spastin; ATPase, microt 100.0 7.2E-38 2.5E-42 298.1 25.9 281 70-371 103-384 (389)
17 2x8a_A Nuclear valosin-contain 100.0 7.4E-38 2.5E-42 283.3 23.7 264 76-361 4-273 (274)
18 3hu3_A Transitional endoplasmi 100.0 5E-39 1.7E-43 312.2 12.8 263 77-359 199-466 (489)
19 3h4m_A Proteasome-activating n 100.0 7.3E-35 2.5E-39 265.9 25.8 261 75-371 10-279 (285)
20 2ce7_A Cell division protein F 100.0 3.4E-34 1.2E-38 276.1 26.5 242 76-354 10-258 (476)
21 1ypw_A Transitional endoplasmi 100.0 8.1E-38 2.8E-42 321.4 -2.1 339 14-371 402-762 (806)
22 1lv7_A FTSH; alpha/beta domain 100.0 2.2E-33 7.4E-38 252.4 24.9 242 76-354 6-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.1E-33 2.1E-37 249.9 18.6 243 77-354 1-251 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 3.4E-32 1.2E-36 263.6 20.0 241 77-354 26-273 (499)
25 1ixz_A ATP-dependent metallopr 100.0 3.5E-31 1.2E-35 237.5 22.8 241 72-349 6-253 (254)
26 2r62_A Cell division protease 100.0 1E-33 3.5E-38 256.0 1.1 249 76-360 5-261 (268)
27 1iy2_A ATP-dependent metallopr 100.0 1.3E-29 4.3E-34 230.4 25.1 238 75-349 33-277 (278)
28 1ypw_A Transitional endoplasmi 100.0 1.3E-28 4.5E-33 253.0 19.8 261 76-356 198-463 (806)
29 3t15_A Ribulose bisphosphate c 99.9 6E-27 2.1E-31 214.0 11.5 175 113-306 34-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 3.6E-24 1.2E-28 197.2 13.6 214 83-321 32-268 (309)
31 3uk6_A RUVB-like 2; hexameric 99.9 5.2E-23 1.8E-27 194.1 19.6 221 77-352 39-330 (368)
32 3pfi_A Holliday junction ATP-d 99.9 5.9E-22 2E-26 184.8 23.9 220 78-352 25-254 (338)
33 2c9o_A RUVB-like 1; hexameric 99.9 6E-22 2E-26 191.9 20.4 107 77-191 32-143 (456)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 5.9E-21 2E-25 176.8 20.6 198 78-312 8-215 (324)
35 1ofh_A ATP-dependent HSL prote 99.9 8.5E-21 2.9E-25 174.4 19.4 250 83-353 16-300 (310)
36 1d2n_A N-ethylmaleimide-sensit 99.8 1E-20 3.5E-25 171.0 15.2 206 82-311 33-245 (272)
37 3hws_A ATP-dependent CLP prote 99.8 7.6E-21 2.6E-25 179.0 13.4 233 84-319 17-326 (363)
38 2z4s_A Chromosomal replication 99.8 9.2E-20 3.1E-24 175.4 19.2 222 76-353 99-333 (440)
39 3m6a_A ATP-dependent protease 99.8 8.9E-21 3.1E-25 187.0 12.4 241 82-354 81-343 (543)
40 3pvs_A Replication-associated 99.8 7.2E-20 2.5E-24 176.0 17.6 218 78-356 22-248 (447)
41 2chg_A Replication factor C sm 99.8 5.6E-19 1.9E-23 153.8 21.2 202 77-350 12-224 (226)
42 1l8q_A Chromosomal replication 99.8 4.8E-19 1.6E-23 164.1 21.0 198 77-314 6-214 (324)
43 2v1u_A Cell division control p 99.8 2.1E-18 7.1E-23 163.2 22.4 227 79-352 16-276 (387)
44 3u61_B DNA polymerase accessor 99.8 3.8E-19 1.3E-23 164.7 16.5 192 78-311 22-219 (324)
45 1g41_A Heat shock protein HSLU 99.8 3.5E-18 1.2E-22 162.3 21.6 262 83-365 16-443 (444)
46 1njg_A DNA polymerase III subu 99.8 5.6E-19 1.9E-23 155.8 15.1 202 78-349 19-248 (250)
47 3bos_A Putative DNA replicatio 99.8 2E-18 6.7E-23 152.5 18.5 206 78-350 24-241 (242)
48 4fcw_A Chaperone protein CLPB; 99.8 2.6E-19 9E-24 164.7 13.2 224 83-322 18-285 (311)
49 2r44_A Uncharacterized protein 99.8 3E-18 1E-22 159.2 20.2 225 81-352 26-297 (331)
50 1g8p_A Magnesium-chelatase 38 99.8 8.5E-19 2.9E-23 163.9 15.2 235 76-352 18-322 (350)
51 3pxi_A Negative regulator of g 99.8 1.2E-18 4.2E-23 178.9 17.6 220 82-321 491-730 (758)
52 1um8_A ATP-dependent CLP prote 99.8 3.1E-18 1.1E-22 161.9 17.6 254 83-350 22-363 (376)
53 1in4_A RUVB, holliday junction 99.8 9.4E-17 3.2E-21 149.2 27.0 220 79-353 22-251 (334)
54 1sxj_D Activator 1 41 kDa subu 99.8 6.4E-18 2.2E-22 158.1 18.3 188 77-314 32-241 (353)
55 1fnn_A CDC6P, cell division co 99.8 4E-17 1.4E-21 154.6 23.6 235 78-362 13-284 (389)
56 1ojl_A Transcriptional regulat 99.8 4.4E-19 1.5E-23 162.6 8.6 202 83-313 3-233 (304)
57 1jbk_A CLPB protein; beta barr 99.8 9.9E-19 3.4E-23 148.6 9.8 158 79-261 19-194 (195)
58 3pxg_A Negative regulator of g 99.8 3.4E-18 1.2E-22 165.9 14.3 190 78-315 176-385 (468)
59 1r6b_X CLPA protein; AAA+, N-t 99.8 7.1E-18 2.4E-22 173.5 17.0 221 83-321 459-721 (758)
60 2bjv_A PSP operon transcriptio 99.8 4E-18 1.4E-22 153.3 13.0 206 79-313 3-238 (265)
61 2qby_B CDC6 homolog 3, cell di 99.8 2.9E-17 1E-21 155.4 19.5 214 82-352 20-270 (384)
62 2chq_A Replication factor C sm 99.8 1.2E-17 4E-22 154.0 16.2 188 78-311 13-207 (319)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 7.5E-18 2.6E-22 173.3 16.2 229 80-353 184-434 (758)
64 2qby_A CDC6 homolog 1, cell di 99.8 9.8E-17 3.4E-21 151.5 22.2 226 78-352 16-272 (386)
65 1sxj_A Activator 1 95 kDa subu 99.8 6.1E-18 2.1E-22 166.2 14.1 202 78-309 35-253 (516)
66 1jr3_A DNA polymerase III subu 99.8 2.6E-17 8.8E-22 155.1 17.7 185 79-312 13-225 (373)
67 1sxj_B Activator 1 37 kDa subu 99.7 6E-17 2.1E-21 149.4 19.5 185 78-312 17-213 (323)
68 3n70_A Transport activator; si 99.7 3.6E-18 1.2E-22 139.3 9.7 131 83-251 2-143 (145)
69 1ny5_A Transcriptional regulat 99.7 1.3E-18 4.5E-23 164.7 6.7 218 16-267 81-327 (387)
70 1iqp_A RFCS; clamp loader, ext 99.7 1E-16 3.5E-21 148.2 19.1 186 77-312 20-216 (327)
71 1qvr_A CLPB protein; coiled co 99.7 4.5E-17 1.5E-21 169.2 15.2 225 82-322 558-826 (854)
72 3pxi_A Negative regulator of g 99.7 3.6E-17 1.2E-21 168.0 14.2 191 78-316 176-386 (758)
73 3co5_A Putative two-component 99.7 3.1E-18 1.1E-22 139.3 5.0 131 83-251 5-141 (143)
74 2p65_A Hypothetical protein PF 99.7 3.5E-17 1.2E-21 138.5 11.5 150 80-253 20-187 (187)
75 1qvr_A CLPB protein; coiled co 99.7 4.7E-17 1.6E-21 169.1 14.1 205 79-316 167-393 (854)
76 3te6_A Regulatory protein SIR3 99.7 1.7E-16 5.8E-21 144.9 16.0 213 84-322 22-293 (318)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 3.8E-17 1.3E-21 158.4 12.3 210 83-319 23-270 (500)
78 1sxj_E Activator 1 40 kDa subu 99.7 2.4E-16 8.3E-21 147.5 16.8 189 78-313 10-242 (354)
79 3dzd_A Transcriptional regulat 99.7 9.2E-18 3.1E-22 157.7 6.3 210 16-267 81-318 (368)
80 3f9v_A Minichromosome maintena 99.7 1.7E-17 5.7E-22 165.1 7.6 239 82-353 295-588 (595)
81 1sxj_C Activator 1 40 kDa subu 99.7 3.4E-15 1.2E-19 139.1 19.3 172 78-298 21-203 (340)
82 3k1j_A LON protease, ATP-depen 99.6 5.2E-15 1.8E-19 148.0 13.6 239 78-365 37-387 (604)
83 1a5t_A Delta prime, HOLB; zinc 99.6 2.9E-14 1E-18 132.3 15.1 174 85-309 5-206 (334)
84 1w5s_A Origin recognition comp 99.5 5.5E-13 1.9E-17 127.0 19.6 212 80-317 20-275 (412)
85 2gno_A DNA polymerase III, gam 99.5 3.8E-13 1.3E-17 122.8 13.7 142 86-265 1-152 (305)
86 3vlf_B 26S protease regulatory 99.4 4.5E-13 1.5E-17 98.7 7.6 86 253-368 2-88 (88)
87 3f8t_A Predicted ATPase involv 99.4 4.5E-12 1.6E-16 119.8 13.3 222 84-353 215-484 (506)
88 3cmw_A Protein RECA, recombina 99.4 1.2E-12 4.2E-17 141.3 10.4 149 77-232 1015-1218(1706)
89 2krk_A 26S protease regulatory 99.4 1.3E-12 4.6E-17 95.5 6.9 78 248-355 7-84 (86)
90 3kw6_A 26S protease regulatory 99.4 1.8E-12 6.1E-17 93.3 7.5 75 250-354 1-75 (78)
91 3aji_B S6C, proteasome (prosom 99.3 9.5E-13 3.2E-17 96.1 5.9 82 253-365 2-83 (83)
92 3ec2_A DNA replication protein 99.2 4.8E-11 1.6E-15 100.4 8.6 97 78-186 6-112 (180)
93 2qen_A Walker-type ATPase; unk 99.2 1.3E-09 4.5E-14 101.0 19.3 193 77-310 7-248 (350)
94 4akg_A Glutathione S-transfera 99.2 1E-10 3.4E-15 131.7 12.4 145 115-268 1267-1434(2695)
95 2kjq_A DNAA-related protein; s 99.2 6.7E-11 2.3E-15 96.3 8.0 107 114-251 35-147 (149)
96 2fna_A Conserved hypothetical 99.1 2.9E-09 9.9E-14 98.9 19.0 189 76-310 7-252 (357)
97 2dzn_B 26S protease regulatory 99.1 1.7E-11 5.8E-16 89.0 2.8 80 255-364 1-81 (82)
98 2w58_A DNAI, primosome compone 99.0 7.9E-10 2.7E-14 94.6 9.7 97 78-186 21-127 (202)
99 2r2a_A Uncharacterized protein 98.9 1.1E-09 3.7E-14 93.4 6.9 128 116-255 6-156 (199)
100 4akg_A Glutathione S-transfera 98.9 5.5E-08 1.9E-12 109.8 19.6 130 116-263 646-791 (2695)
101 2qgz_A Helicase loader, putati 98.9 3.2E-09 1.1E-13 97.0 7.8 96 79-186 121-226 (308)
102 2vhj_A Ntpase P4, P4; non- hyd 98.8 3.3E-09 1.1E-13 96.1 6.1 113 116-237 124-240 (331)
103 1tue_A Replication protein E1; 98.8 1.8E-08 6.1E-13 85.1 10.1 112 116-251 59-178 (212)
104 1jr3_D DNA polymerase III, del 98.7 2.2E-07 7.4E-12 86.2 13.8 157 114-311 17-188 (343)
105 1u0j_A DNA replication protein 98.7 1.1E-07 3.8E-12 84.0 10.2 123 115-264 104-250 (267)
106 3vkg_A Dynein heavy chain, cyt 98.6 9.9E-08 3.4E-12 108.5 9.2 141 116-267 1305-1471(3245)
107 3vkg_A Dynein heavy chain, cyt 98.5 5E-07 1.7E-11 102.9 13.6 129 116-262 605-750 (3245)
108 1ye8_A Protein THEP1, hypothet 98.4 3.6E-06 1.2E-10 70.2 12.4 27 117-143 2-28 (178)
109 3cmu_A Protein RECA, recombina 98.4 5E-07 1.7E-11 99.2 8.8 101 113-213 1425-1551(2050)
110 1z6t_A APAF-1, apoptotic prote 98.3 2.7E-05 9.1E-10 77.4 19.2 176 80-310 122-330 (591)
111 1svm_A Large T antigen; AAA+ f 98.0 2.2E-06 7.6E-11 80.0 4.0 64 113-188 167-230 (377)
112 2w0m_A SSO2452; RECA, SSPF, un 98.0 5.6E-05 1.9E-09 65.2 11.9 35 114-148 22-59 (235)
113 3sfz_A APAF-1, apoptotic pepti 98.0 0.00018 6.2E-09 77.5 18.3 178 80-310 122-330 (1249)
114 2r8r_A Sensor protein; KDPD, P 97.9 0.00054 1.8E-08 58.8 16.3 159 116-313 7-206 (228)
115 1xp8_A RECA protein, recombina 97.9 6.8E-05 2.3E-09 69.7 11.0 75 114-188 73-166 (366)
116 3dm5_A SRP54, signal recogniti 97.9 0.0008 2.7E-08 63.8 18.4 182 114-313 99-308 (443)
117 1qhx_A CPT, protein (chloramph 97.8 1.3E-05 4.5E-10 66.4 4.3 35 116-150 4-38 (178)
118 3hr8_A Protein RECA; alpha and 97.8 0.00013 4.6E-09 67.3 11.4 75 114-188 60-153 (356)
119 2orw_A Thymidine kinase; TMTK, 97.8 2E-05 7E-10 66.0 5.3 30 117-146 5-37 (184)
120 2b8t_A Thymidine kinase; deoxy 97.8 8.6E-05 2.9E-09 64.0 9.2 71 115-186 12-101 (223)
121 1n0w_A DNA repair protein RAD5 97.7 0.00011 3.9E-09 63.8 9.2 76 114-189 23-134 (243)
122 2cvh_A DNA repair and recombin 97.7 0.00024 8.2E-09 60.7 11.0 37 114-150 19-55 (220)
123 3trf_A Shikimate kinase, SK; a 97.7 1.8E-05 6.2E-10 66.0 3.6 32 115-146 5-36 (185)
124 2iut_A DNA translocase FTSK; n 97.7 0.00033 1.1E-08 68.3 12.7 74 176-262 345-420 (574)
125 2a5y_B CED-4; apoptosis; HET: 97.7 0.001 3.4E-08 65.5 16.0 44 85-137 131-174 (549)
126 2z43_A DNA repair and recombin 97.7 0.0001 3.5E-09 67.5 8.3 75 114-188 106-217 (324)
127 3vaa_A Shikimate kinase, SK; s 97.6 2.9E-05 9.8E-10 65.8 3.7 33 114-146 24-56 (199)
128 1u94_A RECA protein, recombina 97.6 0.00011 3.9E-09 67.9 8.0 75 114-188 62-155 (356)
129 3io5_A Recombination and repai 97.6 0.00015 5.3E-09 65.3 8.0 78 112-189 25-126 (333)
130 3cmu_A Protein RECA, recombina 97.6 0.00012 4.1E-09 80.8 8.6 77 113-189 1079-1174(2050)
131 1g5t_A COB(I)alamin adenosyltr 97.6 0.00076 2.6E-08 56.5 11.6 117 116-250 29-178 (196)
132 3kb2_A SPBC2 prophage-derived 97.6 4.3E-05 1.5E-09 62.7 4.0 31 117-147 3-33 (173)
133 2ehv_A Hypothetical protein PH 97.6 0.00054 1.8E-08 59.7 11.2 23 114-136 29-51 (251)
134 2iyv_A Shikimate kinase, SK; t 97.6 4.2E-05 1.4E-09 63.8 3.6 30 117-146 4-33 (184)
135 2fz4_A DNA repair protein RAD2 97.5 0.00026 8.9E-09 61.7 8.7 34 116-149 109-142 (237)
136 2dr3_A UPF0273 protein PH0284; 97.5 0.00056 1.9E-08 59.5 10.9 36 114-149 22-60 (247)
137 3iij_A Coilin-interacting nucl 97.5 4.4E-05 1.5E-09 63.4 3.5 30 116-145 12-41 (180)
138 1v5w_A DMC1, meiotic recombina 97.5 0.0002 7E-09 66.0 8.2 76 114-189 121-234 (343)
139 1zuh_A Shikimate kinase; alpha 97.5 4.5E-05 1.5E-09 62.6 3.4 31 116-146 8-38 (168)
140 1via_A Shikimate kinase; struc 97.5 4.2E-05 1.5E-09 63.2 3.1 29 117-145 6-34 (175)
141 1y63_A LMAJ004144AAA protein; 97.5 5.1E-05 1.7E-09 63.4 3.3 30 116-145 11-41 (184)
142 2ius_A DNA translocase FTSK; n 97.5 0.0013 4.4E-08 63.6 13.4 74 177-263 300-375 (512)
143 2rhm_A Putative kinase; P-loop 97.5 6.1E-05 2.1E-09 63.1 3.7 31 115-145 5-35 (193)
144 2p5t_B PEZT; postsegregational 97.5 0.00024 8.3E-09 62.5 7.5 38 114-151 31-68 (253)
145 1kag_A SKI, shikimate kinase I 97.5 8.3E-05 2.8E-09 61.2 4.2 29 116-144 5-33 (173)
146 2zr9_A Protein RECA, recombina 97.5 0.00028 9.6E-09 65.2 8.1 75 114-188 60-153 (349)
147 4a74_A DNA repair and recombin 97.5 0.0003 1E-08 60.6 7.8 26 114-139 24-49 (231)
148 2cdn_A Adenylate kinase; phosp 97.4 8E-05 2.7E-09 63.0 4.0 31 116-146 21-51 (201)
149 2ze6_A Isopentenyl transferase 97.4 8.1E-05 2.8E-09 65.6 4.0 32 117-148 3-34 (253)
150 3lda_A DNA repair protein RAD5 97.4 0.00044 1.5E-08 65.0 9.1 77 113-189 176-288 (400)
151 1zp6_A Hypothetical protein AT 97.4 9.2E-05 3.1E-09 62.0 4.0 36 115-150 9-44 (191)
152 1e6c_A Shikimate kinase; phosp 97.4 7E-05 2.4E-09 61.6 3.1 29 117-145 4-32 (173)
153 3tlx_A Adenylate kinase 2; str 97.4 0.00016 5.6E-09 63.2 5.6 33 113-145 27-59 (243)
154 3upu_A ATP-dependent DNA helic 97.4 0.00028 9.6E-09 67.8 7.7 48 79-139 21-69 (459)
155 2c95_A Adenylate kinase 1; tra 97.4 8.4E-05 2.9E-09 62.4 3.4 31 116-146 10-40 (196)
156 3lw7_A Adenylate kinase relate 97.4 7.5E-05 2.6E-09 61.3 3.0 28 117-145 3-30 (179)
157 1aky_A Adenylate kinase; ATP:A 97.4 8.8E-05 3E-09 63.8 3.5 31 115-145 4-34 (220)
158 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00043 1.5E-08 61.2 7.9 37 116-152 5-44 (260)
159 1pzn_A RAD51, DNA repair and r 97.4 0.00052 1.8E-08 63.4 8.7 37 114-150 130-175 (349)
160 1tev_A UMP-CMP kinase; ploop, 97.4 8.8E-05 3E-09 62.1 3.2 30 116-145 4-33 (196)
161 3t61_A Gluconokinase; PSI-biol 97.4 0.00013 4.6E-09 61.7 4.3 31 115-145 18-48 (202)
162 3dl0_A Adenylate kinase; phosp 97.4 9.9E-05 3.4E-09 63.2 3.5 30 117-146 2-31 (216)
163 2pt5_A Shikimate kinase, SK; a 97.3 0.0001 3.5E-09 60.3 3.3 29 117-145 2-30 (168)
164 2i3b_A HCR-ntpase, human cance 97.3 0.00076 2.6E-08 56.5 8.8 23 117-139 3-25 (189)
165 3fb4_A Adenylate kinase; psych 97.3 0.0001 3.6E-09 63.0 3.4 30 117-146 2-31 (216)
166 1nlf_A Regulatory protein REPA 97.3 0.0021 7.1E-08 57.3 11.9 24 115-138 30-53 (279)
167 3jvv_A Twitching mobility prot 97.3 0.00039 1.3E-08 64.3 7.2 71 114-184 122-206 (356)
168 3cm0_A Adenylate kinase; ATP-b 97.3 0.00013 4.5E-09 60.7 3.6 29 116-144 5-33 (186)
169 2bwj_A Adenylate kinase 5; pho 97.3 0.00011 3.8E-09 61.8 3.2 30 116-145 13-42 (199)
170 2vli_A Antibiotic resistance p 97.3 0.00011 3.9E-09 60.9 3.2 29 116-144 6-34 (183)
171 1vma_A Cell division protein F 97.3 0.001 3.5E-08 60.2 9.5 72 114-185 103-197 (306)
172 3e1s_A Exodeoxyribonuclease V, 97.3 0.00016 5.5E-09 71.4 4.5 31 116-146 205-238 (574)
173 2i1q_A DNA repair and recombin 97.3 0.00039 1.3E-08 63.5 6.8 75 114-188 97-218 (322)
174 1gvn_B Zeta; postsegregational 97.3 0.00014 4.8E-09 65.4 3.8 37 115-151 33-69 (287)
175 1zd8_A GTP:AMP phosphotransfer 97.3 0.00012 4.3E-09 63.2 3.3 30 116-145 8-37 (227)
176 1qf9_A UMP/CMP kinase, protein 97.3 0.00012 4.3E-09 61.1 3.2 30 116-145 7-36 (194)
177 1vt4_I APAF-1 related killer D 97.3 0.0022 7.6E-08 66.7 12.7 43 85-138 131-173 (1221)
178 1kht_A Adenylate kinase; phosp 97.3 0.00011 3.6E-09 61.5 2.6 25 116-140 4-28 (192)
179 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.5E-09 60.2 3.1 27 116-142 3-30 (181)
180 1knq_A Gluconate kinase; ALFA/ 97.2 0.00021 7.2E-09 58.9 4.2 30 115-144 8-37 (175)
181 1ak2_A Adenylate kinase isoenz 97.2 0.00016 5.5E-09 62.8 3.6 30 116-145 17-46 (233)
182 1ukz_A Uridylate kinase; trans 97.2 0.00016 5.6E-09 61.1 3.5 30 116-145 16-45 (203)
183 3sr0_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 61.1 3.9 33 118-152 3-35 (206)
184 3umf_A Adenylate kinase; rossm 97.2 0.0002 6.7E-09 61.5 4.0 36 115-152 29-64 (217)
185 2pez_A Bifunctional 3'-phospho 97.2 0.00028 9.5E-09 58.5 4.8 36 115-150 5-43 (179)
186 3be4_A Adenylate kinase; malar 97.2 0.00015 5.2E-09 62.2 3.0 31 116-146 6-36 (217)
187 4eun_A Thermoresistant glucoki 97.2 0.00025 8.6E-09 60.0 4.3 36 114-151 28-63 (200)
188 2zts_A Putative uncharacterize 97.2 0.0027 9.3E-08 55.1 11.0 36 114-149 29-68 (251)
189 3kl4_A SRP54, signal recogniti 97.2 0.0052 1.8E-07 58.1 13.5 73 114-186 96-191 (433)
190 1e4v_A Adenylate kinase; trans 97.2 0.00019 6.4E-09 61.4 3.3 30 117-146 2-31 (214)
191 2pbr_A DTMP kinase, thymidylat 97.2 0.00032 1.1E-08 58.6 4.6 30 118-147 3-35 (195)
192 2r6a_A DNAB helicase, replicat 97.2 0.0049 1.7E-07 59.0 13.4 36 114-149 202-241 (454)
193 2bbw_A Adenylate kinase 4, AK4 97.2 0.00029 9.8E-09 61.7 4.3 31 114-144 26-56 (246)
194 1zak_A Adenylate kinase; ATP:A 97.2 0.00022 7.5E-09 61.3 3.5 29 116-144 6-34 (222)
195 3uie_A Adenylyl-sulfate kinase 97.1 0.0004 1.4E-08 58.7 4.9 38 113-150 23-63 (200)
196 3crm_A TRNA delta(2)-isopenten 97.1 0.00027 9.2E-09 64.2 4.0 33 116-148 6-38 (323)
197 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00023 7.9E-09 65.3 3.5 30 116-145 25-54 (359)
198 2z0h_A DTMP kinase, thymidylat 97.1 0.00045 1.5E-08 57.9 4.5 30 118-147 3-35 (197)
199 2if2_A Dephospho-COA kinase; a 97.1 0.00026 9E-09 59.9 3.0 29 117-146 3-31 (204)
200 2xb4_A Adenylate kinase; ATP-b 97.0 0.00036 1.2E-08 60.1 3.9 28 117-144 2-29 (223)
201 1cke_A CK, MSSA, protein (cyti 97.0 0.00036 1.2E-08 60.0 3.9 29 116-144 6-34 (227)
202 2eyu_A Twitching motility prot 97.0 0.00034 1.2E-08 61.9 3.7 72 113-184 23-108 (261)
203 2v54_A DTMP kinase, thymidylat 97.0 0.00045 1.5E-08 58.3 4.3 32 116-147 5-37 (204)
204 2grj_A Dephospho-COA kinase; T 97.0 0.0003 1E-08 59.2 3.1 29 117-145 14-42 (192)
205 2jaq_A Deoxyguanosine kinase; 97.0 0.00035 1.2E-08 58.9 3.6 28 117-144 2-29 (205)
206 1nks_A Adenylate kinase; therm 97.0 0.00026 8.9E-09 59.1 2.4 31 117-147 3-36 (194)
207 3nwj_A ATSK2; P loop, shikimat 97.0 0.00053 1.8E-08 60.2 4.2 31 116-146 49-79 (250)
208 3ake_A Cytidylate kinase; CMP 97.0 0.00057 2E-08 57.8 4.2 29 117-145 4-32 (208)
209 1uf9_A TT1252 protein; P-loop, 96.9 0.00046 1.6E-08 58.1 3.5 30 115-145 8-37 (203)
210 3r20_A Cytidylate kinase; stru 96.9 0.00056 1.9E-08 59.2 4.1 29 116-144 10-38 (233)
211 1jjv_A Dephospho-COA kinase; P 96.9 0.00052 1.8E-08 58.1 3.8 28 117-145 4-31 (206)
212 3bh0_A DNAB-like replicative h 96.9 0.01 3.5E-07 53.8 12.6 36 113-148 66-104 (315)
213 1m7g_A Adenylylsulfate kinase; 96.9 0.0019 6.4E-08 55.0 7.1 38 114-151 24-65 (211)
214 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.001 3.5E-08 60.9 5.6 70 116-185 172-251 (330)
215 2wwf_A Thymidilate kinase, put 96.9 0.0003 1E-08 59.8 1.9 29 115-143 10-38 (212)
216 1uj2_A Uridine-cytidine kinase 96.9 0.00083 2.8E-08 59.0 4.8 38 116-153 23-68 (252)
217 2q6t_A DNAB replication FORK h 96.9 0.0026 9E-08 60.7 8.7 36 114-149 199-238 (444)
218 3a8t_A Adenylate isopentenyltr 96.9 0.00049 1.7E-08 62.7 3.3 34 116-149 41-74 (339)
219 1w4r_A Thymidine kinase; type 96.9 0.0013 4.6E-08 54.9 5.7 34 116-149 21-57 (195)
220 4e22_A Cytidylate kinase; P-lo 96.9 0.00081 2.8E-08 59.1 4.6 30 115-144 27-56 (252)
221 2plr_A DTMP kinase, probable t 96.8 0.00065 2.2E-08 57.6 3.7 27 116-142 5-31 (213)
222 1nn5_A Similar to deoxythymidy 96.8 0.00039 1.3E-08 59.2 2.1 27 115-141 9-35 (215)
223 3foz_A TRNA delta(2)-isopenten 96.8 0.00087 3E-08 60.3 4.0 33 116-148 11-43 (316)
224 3cmw_A Protein RECA, recombina 96.8 0.0039 1.3E-07 68.2 9.7 77 116-192 1432-1527(1706)
225 2qor_A Guanylate kinase; phosp 96.8 0.00086 2.9E-08 56.8 3.7 27 114-140 11-37 (204)
226 1ex7_A Guanylate kinase; subst 96.7 0.0014 4.7E-08 54.8 4.5 27 116-142 2-28 (186)
227 2yvu_A Probable adenylyl-sulfa 96.7 0.0014 4.7E-08 54.5 4.6 36 114-149 12-50 (186)
228 2gxq_A Heat resistant RNA depe 96.7 0.013 4.4E-07 49.2 10.7 18 116-133 39-56 (207)
229 2ewv_A Twitching motility prot 96.7 0.0013 4.5E-08 61.3 4.7 72 113-184 134-219 (372)
230 2qt1_A Nicotinamide riboside k 96.7 0.0008 2.7E-08 57.0 2.9 30 116-145 22-52 (207)
231 3c8u_A Fructokinase; YP_612366 96.7 0.0016 5.3E-08 55.4 4.7 27 114-140 21-47 (208)
232 3d3q_A TRNA delta(2)-isopenten 96.7 0.00094 3.2E-08 61.0 3.5 32 116-147 8-39 (340)
233 1rz3_A Hypothetical protein rb 96.6 0.0042 1.4E-07 52.4 7.3 35 115-149 22-59 (201)
234 3bgw_A DNAB-like replicative h 96.6 0.034 1.2E-06 52.9 14.3 37 113-149 195-234 (444)
235 2h92_A Cytidylate kinase; ross 96.6 0.001 3.5E-08 56.8 3.4 30 116-145 4-33 (219)
236 2qmh_A HPR kinase/phosphorylas 96.6 0.00082 2.8E-08 56.4 2.6 32 115-147 34-65 (205)
237 4a1f_A DNAB helicase, replicat 96.6 0.024 8.3E-07 51.8 12.7 36 113-148 44-82 (338)
238 1vht_A Dephospho-COA kinase; s 96.6 0.0013 4.5E-08 56.2 4.0 29 116-145 5-33 (218)
239 3tau_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 56.1 3.6 27 114-140 7-33 (208)
240 3exa_A TRNA delta(2)-isopenten 96.6 0.0012 4.2E-08 59.4 3.7 32 116-147 4-35 (322)
241 1q3t_A Cytidylate kinase; nucl 96.6 0.0016 5.6E-08 56.4 4.4 31 115-145 16-46 (236)
242 1kgd_A CASK, peripheral plasma 96.6 0.0013 4.5E-08 54.5 3.6 25 116-140 6-30 (180)
243 2bdt_A BH3686; alpha-beta prot 96.6 0.0014 4.7E-08 54.6 3.8 31 117-148 4-34 (189)
244 1w36_D RECD, exodeoxyribonucle 96.6 0.004 1.4E-07 61.9 7.5 23 116-138 165-187 (608)
245 2f6r_A COA synthase, bifunctio 96.5 0.0012 3.9E-08 59.1 3.2 29 116-145 76-104 (281)
246 3fdi_A Uncharacterized protein 96.5 0.0017 5.7E-08 55.0 4.0 29 117-145 8-36 (201)
247 2j41_A Guanylate kinase; GMP, 96.5 0.0014 4.7E-08 55.3 3.4 24 116-139 7-30 (207)
248 1x6v_B Bifunctional 3'-phospho 96.5 0.0056 1.9E-07 60.6 8.0 37 115-151 52-91 (630)
249 3zvl_A Bifunctional polynucleo 96.5 0.0011 3.7E-08 62.8 2.8 34 116-151 259-292 (416)
250 1c9k_A COBU, adenosylcobinamid 96.5 0.002 6.9E-08 53.3 3.8 32 118-150 2-33 (180)
251 3e70_C DPA, signal recognition 96.4 0.02 6.9E-07 52.2 10.9 27 113-139 127-153 (328)
252 3eph_A TRNA isopentenyltransfe 96.4 0.0016 5.5E-08 60.7 3.6 32 116-147 3-34 (409)
253 1ltq_A Polynucleotide kinase; 96.4 0.0016 5.5E-08 58.6 3.5 29 116-144 3-32 (301)
254 3tr0_A Guanylate kinase, GMP k 96.4 0.002 6.9E-08 54.2 3.7 25 116-140 8-32 (205)
255 2j37_W Signal recognition part 96.4 0.014 4.8E-07 56.3 10.0 34 115-148 101-137 (504)
256 1tf7_A KAIC; homohexamer, hexa 96.4 0.009 3.1E-07 58.3 8.7 75 114-188 280-385 (525)
257 3asz_A Uridine kinase; cytidin 96.4 0.002 6.7E-08 54.7 3.4 33 116-148 7-39 (211)
258 3b6e_A Interferon-induced heli 96.4 0.017 5.9E-07 48.6 9.4 23 116-138 49-71 (216)
259 3a00_A Guanylate kinase, GMP k 96.3 0.0021 7.3E-08 53.4 3.5 25 116-140 2-26 (186)
260 1q57_A DNA primase/helicase; d 96.3 0.051 1.7E-06 52.6 13.7 36 114-149 241-280 (503)
261 1xx6_A Thymidine kinase; NESG, 96.3 0.0067 2.3E-07 50.8 6.4 31 116-146 9-42 (191)
262 1lvg_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 54.3 3.2 26 115-140 4-29 (198)
263 2xau_A PRE-mRNA-splicing facto 96.3 0.011 3.7E-07 60.4 9.0 59 78-137 71-131 (773)
264 3b9q_A Chloroplast SRP recepto 96.3 0.0046 1.6E-07 55.8 5.4 26 114-139 99-124 (302)
265 3ney_A 55 kDa erythrocyte memb 96.2 0.0029 1E-07 53.2 3.7 26 115-140 19-44 (197)
266 1t6n_A Probable ATP-dependent 96.2 0.086 3E-06 44.5 13.1 22 116-137 52-73 (220)
267 1rj9_A FTSY, signal recognitio 96.2 0.005 1.7E-07 55.6 5.3 25 115-139 102-126 (304)
268 1qde_A EIF4A, translation init 96.2 0.049 1.7E-06 46.2 11.5 17 116-132 52-68 (224)
269 3llm_A ATP-dependent RNA helic 96.2 0.022 7.7E-07 49.1 9.3 21 116-136 77-97 (235)
270 2px0_A Flagellar biosynthesis 96.1 0.0068 2.3E-07 54.5 5.7 36 114-149 104-143 (296)
271 4b3f_X DNA-binding protein smu 96.1 0.0066 2.3E-07 60.8 6.2 19 117-135 207-225 (646)
272 3gmt_A Adenylate kinase; ssgci 96.1 0.004 1.4E-07 53.6 3.9 35 116-152 9-43 (230)
273 2axn_A 6-phosphofructo-2-kinas 96.1 0.0091 3.1E-07 58.1 6.9 35 116-150 36-73 (520)
274 1gtv_A TMK, thymidylate kinase 96.1 0.0018 6E-08 55.0 1.6 24 118-141 3-26 (214)
275 3thx_B DNA mismatch repair pro 96.0 0.035 1.2E-06 57.4 11.3 22 116-137 674-695 (918)
276 1odf_A YGR205W, hypothetical 3 96.0 0.0078 2.7E-07 53.9 5.7 26 115-140 31-56 (290)
277 1vec_A ATP-dependent RNA helic 96.0 0.034 1.2E-06 46.5 9.5 18 116-133 41-58 (206)
278 2og2_A Putative signal recogni 96.0 0.0066 2.3E-07 56.0 5.2 26 114-139 156-181 (359)
279 2oap_1 GSPE-2, type II secreti 96.0 0.0069 2.4E-07 58.8 5.6 70 115-184 260-343 (511)
280 3bor_A Human initiation factor 96.0 0.038 1.3E-06 47.6 9.9 18 116-133 68-85 (237)
281 1z6g_A Guanylate kinase; struc 96.0 0.0042 1.4E-07 53.2 3.6 25 115-139 23-47 (218)
282 3iuy_A Probable ATP-dependent 96.0 0.035 1.2E-06 47.4 9.5 18 116-133 58-75 (228)
283 1htw_A HI0065; nucleotide-bind 96.0 0.0046 1.6E-07 50.1 3.6 26 114-139 32-57 (158)
284 3hdt_A Putative kinase; struct 96.0 0.0042 1.5E-07 53.4 3.5 30 116-145 15-44 (223)
285 1a7j_A Phosphoribulokinase; tr 95.9 0.0025 8.7E-08 57.2 2.1 36 117-152 7-45 (290)
286 1znw_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 52.2 3.6 26 115-140 20-45 (207)
287 1zu4_A FTSY; GTPase, signal re 95.9 0.011 3.8E-07 53.7 6.3 36 114-149 104-142 (320)
288 2pl3_A Probable ATP-dependent 95.9 0.038 1.3E-06 47.5 9.4 53 79-133 25-80 (236)
289 1s96_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 52.9 3.6 27 114-140 15-41 (219)
290 3p32_A Probable GTPase RV1496/ 95.9 0.052 1.8E-06 50.0 10.8 32 116-147 80-114 (355)
291 1j8m_F SRP54, signal recogniti 95.9 0.087 3E-06 47.2 11.9 35 115-149 98-135 (297)
292 4gp7_A Metallophosphoesterase; 95.9 0.0039 1.3E-07 51.1 2.7 20 116-135 10-29 (171)
293 4eaq_A DTMP kinase, thymidylat 95.8 0.0055 1.9E-07 52.9 3.8 31 115-145 26-58 (229)
294 2fwr_A DNA repair protein RAD2 95.8 0.013 4.3E-07 56.2 6.7 34 116-149 109-142 (472)
295 1hv8_A Putative ATP-dependent 95.8 0.091 3.1E-06 47.9 12.1 22 116-137 45-66 (367)
296 3vkw_A Replicase large subunit 95.8 0.0084 2.9E-07 56.7 5.0 22 116-137 162-183 (446)
297 1sky_E F1-ATPase, F1-ATP synth 95.8 0.028 9.7E-07 53.4 8.6 24 116-139 152-175 (473)
298 2j9r_A Thymidine kinase; TK1, 95.8 0.061 2.1E-06 45.5 9.9 30 118-147 31-63 (214)
299 3tqf_A HPR(Ser) kinase; transf 95.8 0.0052 1.8E-07 50.2 3.0 25 114-138 15-39 (181)
300 1m8p_A Sulfate adenylyltransfe 95.8 0.0073 2.5E-07 59.4 4.7 36 115-150 396-435 (573)
301 2jeo_A Uridine-cytidine kinase 95.8 0.0059 2E-07 53.2 3.7 27 116-142 26-52 (245)
302 2v9p_A Replication protein E1; 95.7 0.0062 2.1E-07 54.9 3.6 30 113-142 124-153 (305)
303 1tf7_A KAIC; homohexamer, hexa 95.7 0.049 1.7E-06 53.0 10.3 35 114-148 38-76 (525)
304 1q0u_A Bstdead; DEAD protein, 95.6 0.061 2.1E-06 45.5 9.4 19 116-134 42-60 (219)
305 2oxc_A Probable ATP-dependent 95.6 0.076 2.6E-06 45.4 10.0 17 116-132 62-78 (230)
306 3lnc_A Guanylate kinase, GMP k 95.5 0.0049 1.7E-07 53.1 2.2 24 116-139 28-52 (231)
307 2xxa_A Signal recognition part 95.5 0.42 1.4E-05 45.1 15.6 37 114-150 99-139 (433)
308 3fe2_A Probable ATP-dependent 95.5 0.047 1.6E-06 47.1 8.3 18 116-133 67-84 (242)
309 1sq5_A Pantothenate kinase; P- 95.4 0.016 5.4E-07 52.4 5.3 25 116-140 81-105 (308)
310 1p9r_A General secretion pathw 95.4 0.022 7.5E-07 53.7 6.4 27 114-140 166-192 (418)
311 3tqc_A Pantothenate kinase; bi 95.4 0.017 5.9E-07 52.4 5.5 25 116-140 93-117 (321)
312 1g8f_A Sulfate adenylyltransfe 95.4 0.0098 3.4E-07 57.5 4.1 26 116-141 396-421 (511)
313 4i1u_A Dephospho-COA kinase; s 95.4 0.0079 2.7E-07 51.0 3.0 29 117-146 11-39 (210)
314 2orv_A Thymidine kinase; TP4A 95.4 0.082 2.8E-06 45.3 9.4 31 117-147 21-54 (234)
315 2v3c_C SRP54, signal recogniti 95.4 0.026 9E-07 53.4 6.9 35 115-149 99-136 (432)
316 3aez_A Pantothenate kinase; tr 95.4 0.0094 3.2E-07 54.0 3.5 26 114-139 89-114 (312)
317 2ged_A SR-beta, signal recogni 95.3 0.019 6.5E-07 47.4 5.1 26 114-139 47-72 (193)
318 3thx_A DNA mismatch repair pro 95.3 0.1 3.4E-06 54.3 11.4 21 116-136 663-683 (934)
319 1g41_A Heat shock protein HSLU 95.3 0.0015 5E-08 62.0 -2.1 57 197-261 128-188 (444)
320 3tif_A Uncharacterized ABC tra 95.3 0.0085 2.9E-07 51.9 2.9 27 114-140 30-56 (235)
321 3cr8_A Sulfate adenylyltranfer 95.3 0.014 4.7E-07 57.1 4.6 37 115-151 369-409 (552)
322 3kta_A Chromosome segregation 95.3 0.011 3.6E-07 48.7 3.3 25 116-140 27-51 (182)
323 1ls1_A Signal recognition part 95.2 0.054 1.9E-06 48.5 8.1 73 114-186 97-192 (295)
324 1cr0_A DNA primase/helicase; R 95.2 0.012 4.1E-07 52.7 3.5 34 114-147 34-71 (296)
325 2cbz_A Multidrug resistance-as 95.2 0.0099 3.4E-07 51.6 2.9 26 114-139 30-55 (237)
326 3ber_A Probable ATP-dependent 95.1 0.052 1.8E-06 47.2 7.6 18 116-133 81-98 (249)
327 2ocp_A DGK, deoxyguanosine kin 95.1 0.014 4.7E-07 50.6 3.8 25 116-140 3-27 (241)
328 3qf4_A ABC transporter, ATP-bi 95.1 0.13 4.4E-06 50.8 11.2 26 114-139 368-393 (587)
329 1p5z_B DCK, deoxycytidine kina 95.1 0.0062 2.1E-07 53.6 1.5 26 115-140 24-49 (263)
330 2f1r_A Molybdopterin-guanine d 95.1 0.0096 3.3E-07 48.8 2.5 24 117-140 4-27 (171)
331 2pcj_A ABC transporter, lipopr 95.1 0.0096 3.3E-07 51.2 2.6 26 115-140 30-55 (224)
332 3dkp_A Probable ATP-dependent 95.1 0.11 3.9E-06 44.7 9.5 17 116-132 67-83 (245)
333 3qf4_B Uncharacterized ABC tra 95.0 0.077 2.6E-06 52.5 9.3 26 114-139 380-405 (598)
334 1xjc_A MOBB protein homolog; s 95.0 0.013 4.5E-07 47.9 3.1 32 116-147 5-39 (169)
335 1xti_A Probable ATP-dependent 95.0 0.51 1.7E-05 43.3 14.6 21 116-136 46-66 (391)
336 2yhs_A FTSY, cell division pro 95.0 0.035 1.2E-06 53.2 6.5 25 115-139 293-317 (503)
337 4a82_A Cystic fibrosis transme 95.0 0.083 2.8E-06 52.1 9.5 26 114-139 366-391 (578)
338 2onk_A Molybdate/tungstate ABC 95.0 0.011 3.9E-07 51.3 2.9 24 116-139 25-48 (240)
339 4f4c_A Multidrug resistance pr 95.0 0.1 3.4E-06 56.6 10.7 27 114-140 443-469 (1321)
340 3ice_A Transcription terminati 95.0 0.054 1.9E-06 50.2 7.3 25 115-139 174-198 (422)
341 1np6_A Molybdopterin-guanine d 95.0 0.014 4.7E-07 48.0 3.1 24 116-139 7-30 (174)
342 2gza_A Type IV secretion syste 94.9 0.013 4.3E-07 54.3 3.1 27 114-140 174-200 (361)
343 1mv5_A LMRA, multidrug resista 94.9 0.012 4.1E-07 51.2 2.8 26 114-139 27-52 (243)
344 1b0u_A Histidine permease; ABC 94.9 0.012 4.2E-07 51.8 2.9 27 114-140 31-57 (262)
345 3b85_A Phosphate starvation-in 94.9 0.0095 3.2E-07 50.6 2.0 23 116-138 23-45 (208)
346 1sgw_A Putative ABC transporte 94.9 0.012 4.3E-07 50.1 2.7 26 115-140 35-60 (214)
347 2qm8_A GTPase/ATPase; G protei 94.9 0.073 2.5E-06 48.6 8.0 25 115-139 55-79 (337)
348 3tmk_A Thymidylate kinase; pho 94.9 0.03 1E-06 47.7 5.1 29 116-144 6-34 (216)
349 2ghi_A Transport protein; mult 94.8 0.014 4.8E-07 51.4 2.9 26 114-139 45-70 (260)
350 2zu0_C Probable ATP-dependent 94.8 0.017 5.7E-07 51.1 3.4 25 114-138 45-69 (267)
351 3sop_A Neuronal-specific septi 94.8 0.015 5E-07 51.6 3.0 23 117-139 4-26 (270)
352 2d2e_A SUFC protein; ABC-ATPas 94.8 0.016 5.5E-07 50.6 3.3 25 114-138 28-52 (250)
353 4edh_A DTMP kinase, thymidylat 94.8 0.016 5.6E-07 49.3 3.2 31 116-146 7-40 (213)
354 3fvq_A Fe(3+) IONS import ATP- 94.8 0.016 5.5E-07 53.4 3.3 25 115-139 30-54 (359)
355 2ffh_A Protein (FFH); SRP54, s 94.8 0.044 1.5E-06 51.7 6.4 35 114-148 97-134 (425)
356 2ixe_A Antigen peptide transpo 94.7 0.015 5E-07 51.6 2.9 26 114-139 44-69 (271)
357 3v9p_A DTMP kinase, thymidylat 94.7 0.02 6.9E-07 49.2 3.7 24 116-139 26-49 (227)
358 1g6h_A High-affinity branched- 94.7 0.014 4.8E-07 51.2 2.7 27 114-140 32-58 (257)
359 2ff7_A Alpha-hemolysin translo 94.7 0.014 4.9E-07 50.9 2.7 27 114-140 34-60 (247)
360 2olj_A Amino acid ABC transpor 94.7 0.015 5.1E-07 51.3 2.9 27 114-140 49-75 (263)
361 3gfo_A Cobalt import ATP-bindi 94.7 0.014 4.8E-07 51.8 2.7 25 115-139 34-58 (275)
362 2pze_A Cystic fibrosis transme 94.7 0.015 5E-07 50.2 2.7 26 114-139 33-58 (229)
363 2p67_A LAO/AO transport system 94.7 0.21 7.1E-06 45.6 10.7 25 115-139 56-80 (341)
364 1ji0_A ABC transporter; ATP bi 94.7 0.015 5.1E-07 50.5 2.7 26 115-140 32-57 (240)
365 1lw7_A Transcriptional regulat 94.6 0.019 6.3E-07 53.2 3.5 26 116-141 171-196 (365)
366 1vpl_A ABC transporter, ATP-bi 94.6 0.016 5.5E-07 50.8 2.9 26 114-139 40-65 (256)
367 2qi9_C Vitamin B12 import ATP- 94.6 0.015 5.3E-07 50.7 2.7 26 115-140 26-51 (249)
368 4g1u_C Hemin import ATP-bindin 94.6 0.015 5.2E-07 51.3 2.7 26 114-139 36-61 (266)
369 2yz2_A Putative ABC transporte 94.6 0.017 5.6E-07 51.1 2.9 26 114-139 32-57 (266)
370 1oix_A RAS-related protein RAB 94.6 0.018 6.1E-07 47.8 3.0 23 117-139 31-53 (191)
371 3d31_A Sulfate/molybdate ABC t 94.6 0.018 6.3E-07 52.8 3.3 26 114-139 25-50 (348)
372 3lv8_A DTMP kinase, thymidylat 94.6 0.021 7.1E-07 49.5 3.4 24 116-139 28-51 (236)
373 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.5E-07 47.9 3.1 22 117-138 7-28 (199)
374 2gks_A Bifunctional SAT/APS ki 94.6 0.022 7.4E-07 55.7 3.9 35 116-150 373-410 (546)
375 1s2m_A Putative ATP-dependent 94.5 0.11 3.9E-06 48.1 8.7 20 116-135 59-78 (400)
376 1bif_A 6-phosphofructo-2-kinas 94.5 0.012 4.1E-07 56.5 1.9 26 116-141 40-65 (469)
377 2yyz_A Sugar ABC transporter, 94.5 0.021 7.2E-07 52.6 3.4 25 115-139 29-53 (359)
378 3rlf_A Maltose/maltodextrin im 94.5 0.021 7.2E-07 53.0 3.4 25 115-139 29-53 (381)
379 2it1_A 362AA long hypothetical 94.5 0.021 7.2E-07 52.7 3.4 25 115-139 29-53 (362)
380 3iby_A Ferrous iron transport 94.5 0.16 5.5E-06 44.3 9.0 22 117-138 3-24 (256)
381 2nq2_C Hypothetical ABC transp 94.5 0.018 6.1E-07 50.5 2.7 25 115-139 31-55 (253)
382 1z47_A CYSA, putative ABC-tran 94.5 0.021 7.1E-07 52.6 3.3 24 116-139 42-65 (355)
383 3e2i_A Thymidine kinase; Zn-bi 94.4 0.048 1.6E-06 46.2 5.2 30 117-146 30-62 (219)
384 2ihy_A ABC transporter, ATP-bi 94.4 0.018 6.1E-07 51.2 2.7 27 114-140 46-72 (279)
385 2dyk_A GTP-binding protein; GT 94.4 0.022 7.6E-07 45.3 3.1 22 117-138 3-24 (161)
386 3h1t_A Type I site-specific re 94.4 0.075 2.6E-06 52.4 7.5 23 116-138 199-221 (590)
387 1v43_A Sugar-binding transport 94.4 0.022 7.7E-07 52.7 3.4 26 114-139 36-61 (372)
388 1nrj_B SR-beta, signal recogni 94.4 0.027 9.2E-07 47.6 3.6 25 115-139 12-36 (218)
389 1oxx_K GLCV, glucose, ABC tran 94.3 0.02 6.7E-07 52.8 2.8 25 115-139 31-55 (353)
390 2gk6_A Regulator of nonsense t 94.3 0.022 7.7E-07 56.7 3.3 23 116-138 196-218 (624)
391 3ld9_A DTMP kinase, thymidylat 94.3 0.029 9.9E-07 48.0 3.6 27 115-141 21-47 (223)
392 3nh6_A ATP-binding cassette SU 94.3 0.019 6.6E-07 51.7 2.6 27 113-139 78-104 (306)
393 1g29_1 MALK, maltose transport 94.2 0.024 8.3E-07 52.5 3.3 24 116-139 30-53 (372)
394 1z2a_A RAS-related protein RAB 94.2 0.026 8.9E-07 45.1 3.1 23 116-138 6-28 (168)
395 2pjz_A Hypothetical protein ST 94.2 0.02 6.9E-07 50.4 2.4 25 115-139 30-54 (263)
396 2wji_A Ferrous iron transport 94.2 0.026 8.9E-07 45.4 2.9 22 117-138 5-26 (165)
397 3ly5_A ATP-dependent RNA helic 94.1 0.07 2.4E-06 46.7 5.9 19 116-134 92-110 (262)
398 2ce2_X GTPase HRAS; signaling 94.1 0.028 9.5E-07 44.7 3.0 22 117-138 5-26 (166)
399 3iev_A GTP-binding protein ERA 94.1 0.19 6.6E-06 45.1 8.9 23 116-138 11-33 (308)
400 3gd7_A Fusion complex of cysti 94.1 0.028 9.5E-07 52.4 3.3 25 114-138 46-70 (390)
401 2zej_A Dardarin, leucine-rich 94.1 0.022 7.6E-07 46.8 2.4 21 117-137 4-24 (184)
402 2gj8_A MNME, tRNA modification 94.1 0.028 9.6E-07 45.7 3.0 23 116-138 5-27 (172)
403 1kao_A RAP2A; GTP-binding prot 94.1 0.03 1E-06 44.6 3.1 23 116-138 4-26 (167)
404 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.029 9.8E-07 44.8 2.9 24 116-139 24-47 (149)
405 2bbs_A Cystic fibrosis transme 94.0 0.025 8.5E-07 50.6 2.8 26 114-139 63-88 (290)
406 4ag6_A VIRB4 ATPase, type IV s 94.0 0.051 1.7E-06 50.7 5.1 35 114-148 34-71 (392)
407 2vp4_A Deoxynucleoside kinase; 94.0 0.03 1E-06 48.1 3.2 29 115-144 20-48 (230)
408 4tmk_A Protein (thymidylate ki 94.0 0.028 9.7E-07 47.8 3.0 24 116-139 4-27 (213)
409 2lkc_A Translation initiation 94.0 0.037 1.3E-06 44.8 3.6 24 115-138 8-31 (178)
410 1ek0_A Protein (GTP-binding pr 94.0 0.032 1.1E-06 44.6 3.1 23 116-138 4-26 (170)
411 1u8z_A RAS-related protein RAL 93.9 0.033 1.1E-06 44.4 3.1 23 116-138 5-27 (168)
412 2c9o_A RUVB-like 1; hexameric 93.9 0.00031 1.1E-08 67.5 -10.7 86 199-310 171-262 (456)
413 2nzj_A GTP-binding protein REM 93.9 0.031 1.1E-06 45.1 2.9 23 116-138 5-27 (175)
414 1z0j_A RAB-22, RAS-related pro 93.9 0.033 1.1E-06 44.6 3.1 24 116-139 7-30 (170)
415 1ko7_A HPR kinase/phosphatase; 93.9 0.04 1.4E-06 49.7 3.8 24 115-138 144-167 (314)
416 1g16_A RAS-related protein SEC 93.9 0.033 1.1E-06 44.6 3.0 23 116-138 4-26 (170)
417 4f4c_A Multidrug resistance pr 93.9 0.14 4.7E-06 55.6 8.6 27 113-139 1103-1129(1321)
418 1fuu_A Yeast initiation factor 93.9 0.41 1.4E-05 44.0 11.0 18 116-133 59-76 (394)
419 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.034 1.2E-06 45.0 3.1 23 116-138 8-30 (177)
420 3ch4_B Pmkase, phosphomevalona 93.8 0.066 2.3E-06 44.9 4.8 38 113-150 9-47 (202)
421 1ky3_A GTP-binding protein YPT 93.8 0.035 1.2E-06 45.0 3.1 23 116-138 9-31 (182)
422 1z08_A RAS-related protein RAB 93.8 0.035 1.2E-06 44.5 3.0 23 116-138 7-29 (170)
423 1wp9_A ATP-dependent RNA helic 93.8 0.25 8.5E-06 46.6 9.5 33 117-149 25-61 (494)
424 2npi_A Protein CLP1; CLP1-PCF1 93.8 0.035 1.2E-06 53.0 3.4 26 114-139 137-162 (460)
425 2o8b_B DNA mismatch repair pro 93.7 0.2 7E-06 52.6 9.4 21 116-136 790-810 (1022)
426 1c1y_A RAS-related protein RAP 93.7 0.038 1.3E-06 44.1 3.1 23 116-138 4-26 (167)
427 2erx_A GTP-binding protein DI- 93.7 0.034 1.1E-06 44.6 2.8 23 116-138 4-26 (172)
428 3q85_A GTP-binding protein REM 93.7 0.036 1.2E-06 44.4 2.9 21 117-137 4-24 (169)
429 1nij_A Hypothetical protein YJ 93.7 0.082 2.8E-06 47.8 5.6 23 117-139 6-28 (318)
430 3fmp_B ATP-dependent RNA helic 93.7 0.17 5.9E-06 48.3 8.2 18 115-132 131-148 (479)
431 1dek_A Deoxynucleoside monopho 93.7 0.033 1.1E-06 48.3 2.8 26 118-143 4-29 (241)
432 1r2q_A RAS-related protein RAB 93.7 0.039 1.3E-06 44.1 3.1 23 116-138 7-29 (170)
433 1r8s_A ADP-ribosylation factor 93.7 0.039 1.3E-06 44.0 3.1 22 117-138 2-23 (164)
434 2wjg_A FEOB, ferrous iron tran 93.7 0.034 1.2E-06 45.6 2.8 23 116-138 8-30 (188)
435 1knx_A Probable HPR(Ser) kinas 93.6 0.032 1.1E-06 50.2 2.7 30 114-144 146-175 (312)
436 3tui_C Methionine import ATP-b 93.6 0.039 1.3E-06 50.9 3.4 26 114-139 53-78 (366)
437 2p6r_A Afuhel308 helicase; pro 93.6 0.15 5.3E-06 51.4 8.1 20 115-134 40-59 (702)
438 3q72_A GTP-binding protein RAD 93.6 0.034 1.2E-06 44.5 2.7 21 117-137 4-24 (166)
439 2j0s_A ATP-dependent RNA helic 93.6 0.25 8.5E-06 45.9 9.1 19 116-134 75-93 (410)
440 4hlc_A DTMP kinase, thymidylat 93.6 0.066 2.3E-06 45.1 4.6 30 117-146 4-35 (205)
441 1upt_A ARL1, ADP-ribosylation 93.6 0.045 1.5E-06 43.9 3.4 23 116-138 8-30 (171)
442 2hxs_A RAB-26, RAS-related pro 93.6 0.039 1.3E-06 44.7 3.0 23 116-138 7-29 (178)
443 3bc1_A RAS-related protein RAB 93.6 0.04 1.4E-06 45.2 3.1 23 116-138 12-34 (195)
444 1tq4_A IIGP1, interferon-induc 93.6 0.056 1.9E-06 50.8 4.4 22 116-137 70-91 (413)
445 2y8e_A RAB-protein 6, GH09086P 93.5 0.041 1.4E-06 44.5 3.0 23 116-138 15-37 (179)
446 1m7b_A RND3/RHOE small GTP-bin 93.5 0.041 1.4E-06 45.1 3.0 23 116-138 8-30 (184)
447 1z0f_A RAB14, member RAS oncog 93.4 0.044 1.5E-06 44.3 3.1 23 116-138 16-38 (179)
448 2fn4_A P23, RAS-related protei 93.4 0.042 1.5E-06 44.5 3.0 23 116-138 10-32 (181)
449 2yv5_A YJEQ protein; hydrolase 93.4 0.03 1E-06 50.4 2.2 23 116-139 166-188 (302)
450 3con_A GTPase NRAS; structural 93.4 0.044 1.5E-06 45.0 3.1 23 116-138 22-44 (190)
451 4dsu_A GTPase KRAS, isoform 2B 93.4 0.044 1.5E-06 44.8 3.1 23 116-138 5-27 (189)
452 2wjy_A Regulator of nonsense t 93.4 0.037 1.3E-06 56.6 3.1 23 116-138 372-394 (800)
453 2oil_A CATX-8, RAS-related pro 93.4 0.045 1.5E-06 45.1 3.1 23 116-138 26-48 (193)
454 2obl_A ESCN; ATPase, hydrolase 93.4 0.073 2.5E-06 48.8 4.8 27 116-142 72-98 (347)
455 3a1s_A Iron(II) transport prot 93.4 0.098 3.4E-06 45.8 5.4 22 116-137 6-27 (258)
456 3t1o_A Gliding protein MGLA; G 93.3 0.045 1.5E-06 45.1 3.0 24 116-139 15-38 (198)
457 2bme_A RAB4A, RAS-related prot 93.3 0.046 1.6E-06 44.7 3.0 23 116-138 11-33 (186)
458 3b1v_A Ferrous iron uptake tra 93.3 0.1 3.5E-06 46.1 5.4 23 116-138 4-26 (272)
459 1svi_A GTP-binding protein YSX 93.3 0.047 1.6E-06 45.0 3.1 24 115-138 23-46 (195)
460 2dpy_A FLII, flagellum-specifi 93.3 0.074 2.5E-06 50.4 4.8 27 116-142 158-184 (438)
461 3l9o_A ATP-dependent RNA helic 93.3 0.25 8.5E-06 52.5 9.2 22 115-136 199-220 (1108)
462 3hjn_A DTMP kinase, thymidylat 93.3 0.083 2.8E-06 44.2 4.6 30 118-147 3-35 (197)
463 2a9k_A RAS-related protein RAL 93.3 0.049 1.7E-06 44.4 3.1 23 116-138 19-41 (187)
464 3clv_A RAB5 protein, putative; 93.3 0.047 1.6E-06 45.1 3.1 23 116-138 8-30 (208)
465 2efe_B Small GTP-binding prote 93.2 0.048 1.6E-06 44.2 3.0 23 116-138 13-35 (181)
466 3tw8_B RAS-related protein RAB 93.2 0.043 1.5E-06 44.4 2.7 22 116-137 10-31 (181)
467 3kkq_A RAS-related protein M-R 93.1 0.052 1.8E-06 44.2 3.1 23 116-138 19-41 (183)
468 2cxx_A Probable GTP-binding pr 93.1 0.046 1.6E-06 44.7 2.8 22 117-138 3-24 (190)
469 1m2o_B GTP-binding protein SAR 93.1 0.051 1.7E-06 44.9 3.0 23 116-138 24-46 (190)
470 2wsm_A Hydrogenase expression/ 93.1 0.051 1.8E-06 46.0 3.1 25 116-140 31-55 (221)
471 1yrb_A ATP(GTP)binding protein 93.1 0.11 3.7E-06 45.2 5.3 33 116-148 15-49 (262)
472 2g6b_A RAS-related protein RAB 93.1 0.054 1.8E-06 43.9 3.1 23 116-138 11-33 (180)
473 2gf9_A RAS-related protein RAB 93.0 0.055 1.9E-06 44.5 3.1 23 116-138 23-45 (189)
474 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.055 1.9E-06 44.0 3.1 23 116-138 6-28 (186)
475 3tbk_A RIG-I helicase domain; 93.0 0.76 2.6E-05 44.3 11.8 22 116-137 20-41 (555)
476 1u0l_A Probable GTPase ENGC; p 93.0 0.033 1.1E-06 50.1 1.7 25 116-140 170-194 (301)
477 3ihw_A Centg3; RAS, centaurin, 93.0 0.056 1.9E-06 44.4 3.0 23 116-138 21-43 (184)
478 2iwr_A Centaurin gamma 1; ANK 93.0 0.048 1.6E-06 44.2 2.6 23 116-138 8-30 (178)
479 1pui_A ENGB, probable GTP-bind 93.0 0.03 1E-06 46.9 1.4 24 115-138 26-49 (210)
480 3dz8_A RAS-related protein RAB 93.0 0.058 2E-06 44.4 3.1 24 116-139 24-47 (191)
481 3pqc_A Probable GTP-binding pr 92.9 0.047 1.6E-06 44.8 2.6 23 116-138 24-46 (195)
482 3c5c_A RAS-like protein 12; GD 92.9 0.057 2E-06 44.4 3.1 23 116-138 22-44 (187)
483 3bwd_D RAC-like GTP-binding pr 92.9 0.059 2E-06 43.7 3.1 23 116-138 9-31 (182)
484 3tkl_A RAS-related protein RAB 92.9 0.059 2E-06 44.4 3.1 23 116-138 17-39 (196)
485 2fg5_A RAB-22B, RAS-related pr 92.9 0.057 1.9E-06 44.6 3.0 23 116-138 24-46 (192)
486 2bov_A RAla, RAS-related prote 92.9 0.059 2E-06 44.8 3.1 23 116-138 15-37 (206)
487 3k53_A Ferrous iron transport 92.8 0.054 1.8E-06 47.7 2.9 23 116-138 4-26 (271)
488 2rcn_A Probable GTPase ENGC; Y 92.8 0.059 2E-06 49.6 3.2 25 116-140 216-240 (358)
489 2atv_A RERG, RAS-like estrogen 92.8 0.067 2.3E-06 44.3 3.4 24 115-138 28-51 (196)
490 2xzl_A ATP-dependent helicase 92.8 0.057 1.9E-06 55.3 3.4 22 116-137 376-397 (802)
491 1vg8_A RAS-related protein RAB 92.8 0.061 2.1E-06 44.8 3.1 23 116-138 9-31 (207)
492 3t5g_A GTP-binding protein RHE 92.8 0.061 2.1E-06 43.7 3.0 23 116-138 7-29 (181)
493 1zd9_A ADP-ribosylation factor 92.8 0.063 2.2E-06 44.1 3.1 23 116-138 23-45 (188)
494 1z06_A RAS-related protein RAB 92.8 0.062 2.1E-06 44.1 3.1 23 116-138 21-43 (189)
495 2a5j_A RAS-related protein RAB 92.8 0.063 2.2E-06 44.2 3.1 22 117-138 23-44 (191)
496 2bcg_Y Protein YP2, GTP-bindin 92.7 0.061 2.1E-06 44.9 3.0 23 116-138 9-31 (206)
497 3reg_A RHO-like small GTPase; 92.7 0.064 2.2E-06 44.2 3.1 23 116-138 24-46 (194)
498 3g5u_A MCG1178, multidrug resi 92.7 0.41 1.4E-05 51.7 10.0 27 113-139 414-440 (1284)
499 1x3s_A RAS-related protein RAB 92.7 0.065 2.2E-06 44.0 3.1 23 116-138 16-38 (195)
500 1zbd_A Rabphilin-3A; G protein 92.7 0.058 2E-06 44.9 2.8 23 116-138 9-31 (203)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-50 Score=375.44 Aligned_cols=260 Identities=34% Similarity=0.554 Sum_probs=229.0
Q ss_pred hhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 72 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
...+.|.++|+||+|++++++.|++.+.+|+.+|+.|...+ .+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 34567889999999999999999999999999999999876 67799999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
+.++|+|+++..++.+|..|+..+||||||||||.+++++.... ....+++.+||..|+++.. ..+|+||
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~------~~~V~vI 291 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET------SKNIKII 291 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC------CCCEEEE
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC------CCCeEEE
Confidence 99999999999999999999999999999999999998775433 3345678899999998865 5589999
Q ss_pred eecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHH
Q psy6716 227 AATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di 304 (371)
+|||+|+.||++++| ||+..|++++|+.++|.+||+.++++.++ ..+++++.+|+.|+||||+||
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-------------~~dvdl~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-------------TRGINLRKVAEKMNGCSGADV 358 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-------------CSSCCHHHHHHHCCSCCHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-------------CccCCHHHHHHHCCCCCHHHH
Confidence 999999999999999 99999999999999999999999998876 678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDW 367 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 367 (371)
..+|++|+..++++. ...|+.+||..|++++.++.....+..++.|
T Consensus 359 ~~l~~eA~~~Air~~-----------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 359 KGVCTEAGMYALRER-----------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 999999999999864 2379999999999988655444445444444
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-48 Score=366.09 Aligned_cols=259 Identities=29% Similarity=0.545 Sum_probs=224.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.+.|.++|+||+|++++++.|++.+.+|+.+++.|...+ .+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 356889999999999999999999999999999999877 7889999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
++|+|++++.++.+|..|+..+||||||||+|.+++.+.... ......+..+|..|++... ..+|+||+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~------~~~ViVIaA 354 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP------RGNIKVMFA 354 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC------TTTEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC------CCcEEEEeC
Confidence 999999999999999999999999999999999998875433 3345677788888887664 558999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+|+.||++++| ||+..|+|++|+.++|.+||+.++++..+ ..+++++.||+.|+||||+||..
T Consensus 355 TNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-------------~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 355 TNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-------------ERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp CSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-------------CSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------CCCCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999 99999999999999999999999998776 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTV-RPEDAEKFTDWI 368 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~-~~~~~~~~~~~~ 368 (371)
+|++|+..++++. ...|+.+||..|++++.+.. ..+....|.+|+
T Consensus 422 l~~eAa~~Air~~-----------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 422 VCTEAGMFAIRAR-----------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 9999999999874 23789999999999874432 224556788885
No 3
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.9e-50 Score=408.36 Aligned_cols=330 Identities=34% Similarity=0.566 Sum_probs=222.4
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcC-----CCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCC
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQ-----DKP-----------VNEMYEAILKKLKLDPEEKKLARNILSEVLKAET 77 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (371)
.|+||+|++|..+|..+++..+.+..+ ... ..+.|+.++....+.. .+......+
T Consensus 402 ~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~---------~r~~~~~~p 472 (806)
T 3cf2_A 402 ETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA---------LRETVVEVP 472 (806)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC---------CCCCCCBCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc---------cccccccCC
Confidence 489999999999998776655543211 000 1123334444333322 122334567
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~ 156 (371)
.++|++++|++++++.|.+.+.+|+.+++.|.+.+ .+++++|||||||||||++|+++|.+++.+|+.++.+++.++|+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 88999999999999999999999999999998776 67789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 157 g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
|++++.++.+|..|+..+||||||||||.+++.+... .....+++++||..|+++.. ..+|+||+|||+|
T Consensus 553 Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~------~~~V~vi~aTN~p 626 (806)
T 3cf2_A 553 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFIIGATNRP 626 (806)
T ss_dssp SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS------SSSEEEECC-CCS
T ss_pred chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC------CCCEEEEEeCCCc
Confidence 9999999999999999999999999999999887532 24567899999999999875 4589999999999
Q ss_pred CCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 233 WDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 233 ~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+.||++++| ||+..+++++|+.++|.+||+.++++.++ ..+++++.||+.|+||||+||..+|++
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~-------------~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------AKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---------------CCC----------------CHHHHHHH
T ss_pred hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC-------------CCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999 99999999999999999999999988776 678899999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccc--------cCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 311 AAFMNLRRYLNQNPAVAM--------KDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 311 a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
|+..++++.+........ ......+...+|+.+||..|++.++||++.++++.|++|.++|
T Consensus 694 A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f 762 (806)
T 3cf2_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 762 (806)
T ss_dssp HHHHHHHHHHC-----------------------CCC----CCTTTC---------------CCCC---
T ss_pred HHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 999999998654321110 0111122235799999999999999999999999999999876
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-48 Score=365.67 Aligned_cols=252 Identities=36% Similarity=0.568 Sum_probs=228.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.+.|.++|+||+|++++++.|++.+.+|+.+++.|...+ .+++|||||||||||||++|+++|.+++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 456889999999999999999999999999999999887 6679999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
++|+|+.++.++.+|..|+..+||||||||+|.+++.+.... ....+.+..||..++++.. ..+++||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~------~~~ViVIaA 327 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD------RGDVKVIMA 327 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC------SSSEEEEEE
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC------CCCEEEEEe
Confidence 999999999999999999999999999999999998875433 3345677889999988765 458999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+|+.||++++| ||+..|+|++|+.++|.+||+.++++..+ ..+++++.+|..|+||||+||..
T Consensus 328 TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-------------~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 328 TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-------------SEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-------------CSCCCHHHHHHHCCSCCHHHHHH
T ss_pred CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-------------CCcCCHHHHHHhCCCCCHHHHHH
Confidence 9999999999999 99999999999999999999999998776 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDA 361 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 361 (371)
+|++|+..++++. ...|+.+||..|++++.++.+.+++
T Consensus 395 l~~eA~~~Air~~-----------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 395 MCTEAGLLALRER-----------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp HHHHHHHHHHHTT-----------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHcC-----------------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 9999999999864 2379999999999988665544433
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=363.14 Aligned_cols=249 Identities=35% Similarity=0.573 Sum_probs=227.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
...|.++|+||+|++++++.|++.+.+|+.+++.|...+ .+++|||||||||||||++|+++|.+++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356788999999999999999999999999999999877 6689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
++|+|++++.++.+|..|+..+||||||||+|.+++++.... ......+..||..|+++.. ..+|+||||
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~------~~~ViVIaa 326 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS------DDRVKVLAA 326 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS------SCSSEEEEE
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC------CCCEEEEEe
Confidence 999999999999999999999999999999999998876544 2345677889999988865 457999999
Q ss_pred cCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
||+|+.||++++| ||+..|++++|+.++|.+||+.++++..+ ..+++++.+|+.|+||||+||..
T Consensus 327 TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-------------DDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-------------CSCCCHHHHHHHCSSCCHHHHHH
T ss_pred CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-------------CCcCCHHHHHHhCCCCCHHHHHH
Confidence 9999999999999 99999999999999999999999998876 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCH
Q psy6716 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRP 358 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 358 (371)
+|++|+..++++. ...|+.+||..|+++++++.+.
T Consensus 394 l~~eA~~~a~r~~-----------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 394 VTVEAGMIALRNG-----------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHHHHHHHT-----------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 9999999999874 2379999999999999987653
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-47 Score=364.63 Aligned_cols=258 Identities=34% Similarity=0.549 Sum_probs=227.2
Q ss_pred hccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 73 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
....|.++|+||+|++++++.|++.+.+|+.+++.|...+ .|++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 3456889999999999999999999999999999999877 677999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
.++|+|+++..++.+|..|+..+||||||||+|.+++++.... .....++..||..|+++.. ..+++||+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~------~~~vivI~ 325 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN------LGQTKIIM 325 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC------TTSSEEEE
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC------CCCeEEEE
Confidence 9999999999999999999999999999999999998774432 3446678899999998865 45789999
Q ss_pred ecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 228 ATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 228 ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|||+|+.||++++| ||+..|+|++|+.++|.+||+.++++... ..+++++.+|+.|+||||+||.
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------~~d~dl~~lA~~t~G~sGADi~ 392 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-------------TGEFDFEAAVKMSDGFNGADIR 392 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-------------CSCCCHHHHHHTCCSCCHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-------------CcccCHHHHHHhCCCCCHHHHH
Confidence 99999999999998 79999999999999999999999998776 6788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIK 369 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~ 369 (371)
.+|++|+..++++. ...|+.+||..|++++.++...+ .+.+|.|
T Consensus 393 ~l~~eA~~~air~~-----------------~~~i~~~d~~~Al~~v~~~~k~e---~~~e~~K 436 (437)
T 4b4t_L 393 NCATEAGFFAIRDD-----------------RDHINPDDLMKAVRKVAEVKKLE---GTIEYQK 436 (437)
T ss_dssp HHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHHhccCcc---cchhhhc
Confidence 99999999999864 23799999999999988776544 3444543
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-47 Score=357.69 Aligned_cols=250 Identities=34% Similarity=0.564 Sum_probs=226.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
.+.|.++|+||+|++++++.|++.+.+|+.+++.|...+ .+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 346778999999999999999999999999999999877 6789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
++|+|+.+..++.+|..|+..+||||||||+|.+++.+.... ....+++.+||..|+++.. ..+++||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~------~~~v~vI~a 317 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ------STNVKVIMA 317 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS------SCSEEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC------CCCEEEEEe
Confidence 999999999999999999999999999999999998774332 3456789999999999875 457999999
Q ss_pred cCCCCCccHHHHh--cccceEEec-CCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 229 TNFPWDLDEAFRR--RLEKRIYVP-IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 229 tn~~~~l~~~l~~--rf~~~i~~~-~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
||+|+.||++++| ||+..|++| +|+.++|..||+.++++..+ .++++++.+|..|+||||+||.
T Consensus 318 TN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-------------~~~~dl~~lA~~t~G~sgadi~ 384 (428)
T 4b4t_K 318 TNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-------------APEADLDSLIIRNDSLSGAVIA 384 (428)
T ss_dssp ESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-------------CTTCCHHHHHHHTTTCCHHHHH
T ss_pred cCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-------------CcccCHHHHHHHCCCCCHHHHH
Confidence 9999999999999 999999996 89999999999999998776 6788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHh-CCCCCCHH
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRN-CPKTVRPE 359 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~-~~~~~~~~ 359 (371)
.+|++|+..++++. ...|+.+||..|+.+ ++++.+.+
T Consensus 385 ~l~~eA~~~a~r~~-----------------~~~i~~~d~~~A~~~~~~~~~~~~ 422 (428)
T 4b4t_K 385 AIMQEAGLRAVRKN-----------------RYVILQSDLEEAYATQVKTDNTVD 422 (428)
T ss_dssp HHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHSCSCCCSS
T ss_pred HHHHHHHHHHHHCC-----------------CCCCCHHHHHHHHHHhhCccCCcc
Confidence 99999999999874 237999999999976 55655543
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=329.08 Aligned_cols=281 Identities=43% Similarity=0.768 Sum_probs=243.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-CCCeEEEeccccc
Q psy6716 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-KSNFFNITSSTLT 152 (371)
Q Consensus 74 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-~~~~~~v~~~~l~ 152 (371)
.+.+.++|++|+|++.+++.|++.+.+|+.+++.+.....+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 346788999999999999999999999999999888666777999999999999999999999999 8899999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 153 SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
..+.|..+..++.+|..++...|+||||||+|.+.+.+.... ....+++.+|+..++++.. ...+++||++||.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-----~~~~v~vI~atn~ 158 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-----DNDGILVLGATNI 158 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-----CCTTEEEEEEESC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-----cCCCEEEEEecCC
Confidence 999999999999999999999999999999999988765443 5567888999999987653 2468999999999
Q ss_pred CCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 232 PWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 232 ~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
++.++++++|||+..+++++|+.++|.+|++.++...+.. ..+.++..+|+.+.||+|+||..+|++|
T Consensus 159 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~------------l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS------------LTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC------------CCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC------------CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876542 3567899999999999999999999999
Q ss_pred HHHHHHHHhhcCCccc-------------------------------ccCCCcccc-cccccHHHHHHHHHhCCCCCCHH
Q psy6716 312 AFMNLRRYLNQNPAVA-------------------------------MKDIPDKEL-DKAIVQADFDEAVRNCPKTVRPE 359 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~-~~~i~~~d~~~al~~~~~~~~~~ 359 (371)
+..++++......... +.++..... ..+|+.+||..|++.++|+++.+
T Consensus 227 ~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~ 306 (322)
T 1xwi_A 227 LMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH 306 (322)
T ss_dssp HTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH
T ss_pred HHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH
Confidence 9999999764311000 001111111 24799999999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy6716 360 DAEKFTDWIKWL 371 (371)
Q Consensus 360 ~~~~~~~~~~~~ 371 (371)
+++.|++|.++|
T Consensus 307 ~~~~~~~~~~~~ 318 (322)
T 1xwi_A 307 DLLKLKKFTEDF 318 (322)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.5e-43 Score=326.46 Aligned_cols=283 Identities=41% Similarity=0.719 Sum_probs=242.8
Q ss_pred hhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 72 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
+....+..+|++++|++.+++.|.+.+.+|+.+++.+.....+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 44567889999999999999999999999999998888777788999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
.+.+.|.....++.+|..+....|+||||||||.+.+.+.... ....+++..++..+++... ...+++||++||
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~v~vi~atn 162 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-----DSQGVLVLGATN 162 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT-----SCCCEEEEEEES
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc-----cCCceEEEEecC
Confidence 9999999999999999999999999999999999988764332 4566788999999987753 245899999999
Q ss_pred CCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 231 FPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 231 ~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.++.+++++++||+..+++++|+.++|.+|++.++...+.. ..+.++..+|..+.||+++||..+|++
T Consensus 163 ~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~------------~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 163 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV------------LTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC------------CCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred ChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC------------CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999876642 356789999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccc-------------------------ccCCCccc-ccccccHHHHHHHHHhCCCCCCHHHHHHH
Q psy6716 311 AAFMNLRRYLNQNPAVA-------------------------MKDIPDKE-LDKAIVQADFDEAVRNCPKTVRPEDAEKF 364 (371)
Q Consensus 311 a~~~~~~~~~~~~~~~~-------------------------~~~~~~~~-~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 364 (371)
|+..++++..+...... +.++.... ...+|+.+||..|++.++|+++.++++.|
T Consensus 231 a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~ 310 (322)
T 3eie_A 231 ALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQ 310 (322)
T ss_dssp HTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999865421100 01111111 12579999999999999999999999999
Q ss_pred HHHHhhC
Q psy6716 365 TDWIKWL 371 (371)
Q Consensus 365 ~~~~~~~ 371 (371)
++|.++|
T Consensus 311 ~~~~~~~ 317 (322)
T 3eie_A 311 EQFTRDF 317 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.9e-42 Score=323.93 Aligned_cols=285 Identities=41% Similarity=0.717 Sum_probs=232.6
Q ss_pred hhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 70 SEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 70 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
..+....+..+|++|+|++.+++.|.+.+.+|+.++..+.....+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 33444567889999999999999999999999999988887667788999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 150 TLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 150 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
++...+.|.....++.+|..+....|+||||||+|.+.+.+.... ....+++..|+..|++... ...+++||++
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~v~vI~a 193 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-----DSQGVLVLGA 193 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--------CCEEEEEE
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc-----cCCCeEEEee
Confidence 999999999999999999999988999999999999987654332 4567788899999987643 2457999999
Q ss_pred cCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 229 TNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 229 tn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
||.++.+++++++||+..+++++|+.++|.+|++.++...+.. .++.++..||..+.||+|+||..+|
T Consensus 194 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~------------~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 194 TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV------------LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC------------CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC------------CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999876542 3567899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcc-------------------------cccCCCccc-ccccccHHHHHHHHHhCCCCCCHHHHH
Q psy6716 309 RDAAFMNLRRYLNQNPAV-------------------------AMKDIPDKE-LDKAIVQADFDEAVRNCPKTVRPEDAE 362 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~~~i~~~d~~~al~~~~~~~~~~~~~ 362 (371)
++|...++++........ .+.++.... ...+|+.+||..|++.++|+++.+++.
T Consensus 262 ~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~ 341 (355)
T 2qp9_X 262 KDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLL 341 (355)
T ss_dssp HHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHH
Confidence 999999999875431000 001111111 124799999999999999999999999
Q ss_pred HHHHHHhhC
Q psy6716 363 KFTDWIKWL 371 (371)
Q Consensus 363 ~~~~~~~~~ 371 (371)
.|++|.++|
T Consensus 342 ~~~~~~~~~ 350 (355)
T 2qp9_X 342 KQEQFTRDF 350 (355)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999987
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.7e-41 Score=327.56 Aligned_cols=286 Identities=42% Similarity=0.755 Sum_probs=233.2
Q ss_pred HhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-CCCeEEEe
Q psy6716 69 LSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-KSNFFNIT 147 (371)
Q Consensus 69 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-~~~~~~v~ 147 (371)
...+....+..+|++|+|++.+++.|.+.+.+|+.++..+.....+++++||+||||||||++|+++|+++ +.+|+.++
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 34455567788999999999999999999999988888887655677899999999999999999999999 88999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 148 SSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 148 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
++++...+.|.....++.+|..+....|+||||||||.+.+.+.... ....++++.|+..+++... ...+++||
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-----~~~~v~vI 275 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-----DNDGILVL 275 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-----CCSSCEEE
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-----CCCCEEEE
Confidence 99999999888888899999999988999999999999988765433 5567888899998887643 24689999
Q ss_pred eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 227 AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
+|||.++.++++++|||+..+++++|+.++|..|++.++...+.. .++.+++.||..+.||+|+||..
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~------------l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS------------LTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE------------CCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC------------CCHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999999999999999999999999876542 35678999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcc-------------------------------cccCCCccc-ccccccHHHHHHHHHhCCC
Q psy6716 307 VCRDAAFMNLRRYLNQNPAV-------------------------------AMKDIPDKE-LDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 307 l~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~-~~~~i~~~d~~~al~~~~~ 354 (371)
+|++|+..++++........ .+.++.... ...+|+.+||..|++.++|
T Consensus 344 l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~p 423 (444)
T 2zan_A 344 IVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKP 423 (444)
T ss_dssp HHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCC
Confidence 99999999999976431000 000111111 1357999999999999999
Q ss_pred CCCHHHHHHHHHHHhhC
Q psy6716 355 TVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (371)
|++.+++..|++|.++|
T Consensus 424 s~~~~~~~~~~~~~~~~ 440 (444)
T 2zan_A 424 TVNEQDLLKLKKFTEDF 440 (444)
T ss_dssp SCCHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999876
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=312.72 Aligned_cols=281 Identities=36% Similarity=0.633 Sum_probs=237.5
Q ss_pred hhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 72 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
.....+..+|++|+|++.+++.|++.+.+|+.+++.+...+ .++.++||+||||||||++|+++|..++.+++.+++++
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 34556888999999999999999999999999999988766 56789999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
+...++|.....++.+|..+....|++|||||+|.+.+.+... .....+++..|+..++++.. ..+++||
T Consensus 85 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~------~~~v~vi 158 (301)
T 3cf0_A 85 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFII 158 (301)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT------TSSEEEE
T ss_pred HHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC------CCCEEEE
Confidence 9988888888889999999998899999999999998654321 12345678889999987653 4579999
Q ss_pred eecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHH
Q psy6716 227 AATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di 304 (371)
++||.++.+++++++ ||+..+++++|+.++|.+|++.+++..+. ..+.+++.++..+.||+|+||
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-------------~~~~~~~~la~~~~g~sg~dl 225 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------AKDVDLEFLAKMTNGFSGADL 225 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------CSSCCHHHHHHTCSSCCHHHH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-------------CccchHHHHHHHcCCCCHHHH
Confidence 999999999999999 99999999999999999999999988765 467789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccc-cc-------CCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVA-MK-------DIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
..+|++|...++++.+....... .. +.........|+.+||..|++.++|+++.++++.|++|.++|
T Consensus 226 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 226 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999988763311100 00 000001124799999999999999999999999999999875
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.1e-42 Score=346.95 Aligned_cols=262 Identities=34% Similarity=0.552 Sum_probs=230.8
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+.++|+||+|++++++.|++.+.+|+.+++.|...+ .+++|||||||||||||++|+++|++++.+++.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4678999999999999999999999999999999887 778999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
+.|+.+..++.+|..|+..+|+||||||||.+++++.... +...++.++|+..|+++.. ..+|+||++||+++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~------~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ------RAHVIVMAATNRPN 351 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG------GGCEEEEEECSSTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc------cCCEEEEEecCChh
Confidence 9999999999999999999999999999999999876544 5667889999999998865 34799999999999
Q ss_pred CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 234 DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 234 ~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
.+|++++| ||+..|++++|+.++|.+||+.++++... ..++++..+|..|+||+++||..+|++|
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-------------~~dvdl~~lA~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------ADDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-------------CTTCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-------------CcccCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999 99999999999999999999999988766 6788999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCC
Q psy6716 312 AFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTV 356 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 356 (371)
...++++.....................++.+||..|++.++|+.
T Consensus 419 ~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 419 ALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 999999876533211100000011134689999999999998865
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=304.36 Aligned_cols=289 Identities=37% Similarity=0.681 Sum_probs=239.4
Q ss_pred HHHHHHHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 62 KKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
....+.+..++....+..+|++|+|++.+++.|.+.+.+|+..++.+...+.++.++||+||||||||++|+++|+.++.
T Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp HHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34445556666777788899999999999999999999888888877766677789999999999999999999999999
Q ss_pred CeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC-hhhhhhhHHHHHHHhhcccccCCCCCC
Q psy6716 142 NFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS-TDVTRRMKSELLCQMDGLASVSNEDPN 220 (371)
Q Consensus 142 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~ 220 (371)
+++.++++++...+.|.....++.+|..+....|+||||||||.+.+.+... .....+++..|+..+++.... ..
T Consensus 144 ~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~----~~ 219 (357)
T 3d8b_A 144 TFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS----SE 219 (357)
T ss_dssp EEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--------CC
T ss_pred eEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc----CC
Confidence 9999999999999999999999999999998899999999999998765433 245667888999998865431 24
Q ss_pred CCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCC
Q psy6716 221 KSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYS 300 (371)
Q Consensus 221 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s 300 (371)
.+++||++||.++.+++++++||...+++++|+.++|.++++.++...+.. ..+.++..++..+.||+
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~------------l~~~~l~~la~~t~G~s 287 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC------------LSEEEIEQIVQQSDAFS 287 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC------------CCHHHHHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC------------ccHHHHHHHHHHcCCCC
Confidence 589999999999999999999999899999999999999999999876542 34567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 301 SADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 301 ~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
++||..+|++|+..++++..+... ..+. .....+|+.+||..|++.++|+++.++++.|++|.+.|
T Consensus 288 ~~dl~~l~~~a~~~~ir~l~~~~~----~~~~-~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 288 GADMTQLCREASLGPIRSLQTADI----ATIT-PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp HHHHHHHHHHHHTHHHHHCCC---------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh----cccc-ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999986422111 0111 01124799999999999999999999999999999875
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=6.7e-39 Score=294.42 Aligned_cols=287 Identities=41% Similarity=0.686 Sum_probs=234.1
Q ss_pred HHHHHhhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 65 ARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.+.+........+..+|++++|++.+++.|.+.+..|..+++.+...+.++.++||+||||||||++|+++|..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 4 VQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp HHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 34445556666678899999999999999999999988888888777677789999999999999999999999999999
Q ss_pred EEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCE
Q psy6716 145 NITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSV 223 (371)
Q Consensus 145 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v 223 (371)
.++++.+...+.+......+.+|..+....|++|||||+|.+...+.... ......+..|+..+++..... ...++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~v 160 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP---DGDRI 160 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---------CE
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC---CCCcE
Confidence 99999999999999899999999999998999999999999987654432 334567788888888765321 13478
Q ss_pred EEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHH
Q psy6716 224 LILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSAD 303 (371)
Q Consensus 224 ~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~d 303 (371)
+||++||.++.+++++++||+..+++++|+.++|..+++.++...+.. ..+.++..++..+.||+++|
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~------------~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP------------LDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC------------SCHHHHHHHHHHTTTCCHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999999999999999999999999999876542 34567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 304 ITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 304 i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
|..+|++|+..++++..+..... .. ......|+.+||..|++.++|+.+.+.+..|++|.++|
T Consensus 229 l~~l~~~a~~~a~r~~~~~~~~~----~~-~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~ 291 (297)
T 3b9p_A 229 LTALAKDAALEPIRELNVEQVKC----LD-ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291 (297)
T ss_dssp HHHHHHHHTTHHHHTCC-------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhhhhccc----cc-ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998753211110 00 01124799999999999999999999999999999875
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7.2e-38 Score=298.10 Aligned_cols=281 Identities=41% Similarity=0.684 Sum_probs=227.9
Q ss_pred hhhhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 70 SEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 70 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
..+....+..+|++|+|++.+++.|.+.+..+..+++.+...+.++.++||+||||||||++|+++|..++.+|+.++|+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 34455567778999999999999999999998888888877777778999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEee
Q psy6716 150 TLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAA 228 (371)
Q Consensus 150 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t 228 (371)
.+...+.|.....+..+|..+....|+||||||||.|+..+.... ....+++..|+..+++.... ...+++||++
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~v~vI~a 258 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA----GDDRVLVMGA 258 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---------CEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc----CCCCEEEEEe
Confidence 999999999999999999999999999999999999987654432 44678888999998866542 2457999999
Q ss_pred cCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 229 TNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 229 tn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
||.++.+++++++||...++++.|+.++|.+|++.++...+.. ..+.++..++..+.||++++|..+|
T Consensus 259 tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~------------l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 259 TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP------------LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC------------SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999998899999999999999999999876542 3455789999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
++|+..++++..+.... .+... ....|+.+||..+++.+.++++.+.++.|++|.++|
T Consensus 327 ~~a~~~~~rel~~~~~~----~~~~~-~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~ 384 (389)
T 3vfd_A 327 KDAALGPIRELKPEQVK----NMSAS-EMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 384 (389)
T ss_dssp HHHTTHHHHTSCCC-------CCSSS-CCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhh----ccchh-hcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999875322111 11111 124799999999999999999999999999999986
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=283.33 Aligned_cols=264 Identities=36% Similarity=0.617 Sum_probs=206.9
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.|.++|+||+|++++++.|.+.+.+|+..+..+...+ .+++|++|+||||||||++++++|..++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 4678999999999999999999999999999998776 556789999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
+.++....+..+|..+....|+++|+||+|.+.+.+.... ....+..++++..|++... ...++++++||+|+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~------~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA------RQQVFIMAATNRPD 157 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS------TTCEEEEEEESCGG
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc------cCCEEEEeecCChh
Confidence 8888888999999999888899999999999876543221 2334677888888987754 45789999999999
Q ss_pred CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc--cCCCHHHHHHHHH
Q psy6716 234 DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL--EGYSSADITIVCR 309 (371)
Q Consensus 234 ~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~g~s~~di~~l~~ 309 (371)
.+|++++| ||+..+++++|+.++|.+|++.+++.... .....+.+++.+|..+ +||||+||..+|+
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTK----------PPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBT----------TBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccC----------CCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 99999999 99999999999999999999999864221 1125678999999875 5999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHH
Q psy6716 310 DAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDA 361 (371)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 361 (371)
+|+..++++........ .......|+.+||+.|++.++|+++.+++
T Consensus 228 ~a~~~a~~~~~~~~~~~------~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 228 EASICALRQEMARQKSG------NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHHHHHHHC-----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHHHHhhcccc------ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 99999998864322110 01112479999999999999999988764
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5e-39 Score=312.21 Aligned_cols=263 Identities=35% Similarity=0.567 Sum_probs=226.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
+..+|++|+|++.+++.|++.+..++.+++.+...+ .++.++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999998875 6678999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC-hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD 234 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~ 234 (371)
.|+....++.+|..+....|++|||||||.+.+++... .+...+++..|+..|++... ..+++||+|||.++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~------~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ------RAHVIVMAATNRPNS 352 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT------TSCEEEEEEESCGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc------CCceEEEEecCCccc
Confidence 99999999999999999999999999999999876544 36677899999999987653 558999999999999
Q ss_pred ccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy6716 235 LDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 235 l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~ 312 (371)
+++++++ ||+..+++++|+.++|.+|++.++....+ ..+.++..++..+.||+++||..+|++|+
T Consensus 353 Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-------------~~~~~l~~la~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------ADDVDLEQVANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-------------cchhhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999988776 56778999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccccCCCc-ccccccccHHHHHHHHHhCCCCCCHH
Q psy6716 313 FMNLRRYLNQNPAVAMKDIPD-KELDKAIVQADFDEAVRNCPKTVRPE 359 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~al~~~~~~~~~~ 359 (371)
..++++......... ..... ......|+.+||..|++.++|+...+
T Consensus 420 ~~a~r~~~~~i~~~~-~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 420 LQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp HHHHHTTTTTCCTTC-SSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred HHHHHhccccccccc-cccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 999998654321110 00100 01134799999999999998765443
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-35 Score=265.86 Aligned_cols=261 Identities=36% Similarity=0.608 Sum_probs=211.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
..+..+|++++|++.+++.|.+.+..++..++.+...+ .++.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678899999999999999999999988888888776 56789999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
.+.+.....+..+|..+....|+||||||+|.+.+++.... ......+..++..+++... ..+++||+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~~~vI~tt 163 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA------RGDVKIIGAT 163 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS------SSSEEEEEEC
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC------CCCEEEEEeC
Confidence 99999999999999999999999999999999987765432 2223344455555544432 4579999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|.++.+++++++ ||+..+.++.|+.++|.+|++.++..... ..+.++..++..+.|+++++|..+
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-------------~~~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-------------AEDVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-------------CTTCCHHHHHHHCTTCCHHHHHHH
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-------------CCcCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999 99999999999999999999999987765 567789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhC
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK--TVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~--~~~~~~~~~~~~~~~~~ 371 (371)
|+.|...++.+. ...|+.+||..|++.+.+ +.+...-..|..|...|
T Consensus 231 ~~~a~~~a~~~~-----------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
T 3h4m_A 231 CTEAGMNAIREL-----------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLE 279 (285)
T ss_dssp HHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHHhc-----------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHh
Confidence 999999988864 237999999999998742 23334455677776543
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.4e-34 Score=276.08 Aligned_cols=242 Identities=38% Similarity=0.593 Sum_probs=206.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+..+|++++|++++++.+.+.+.. +..+..+...+ .+++++||+||||||||++|+++|.+.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4567899999999999999998765 44556666554 566889999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+.|.....++.+|..+....|+||||||+|.+.+++... .......+++|+..|+++.. ..+++||++||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~------~~~viVIaaTn 162 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS------KEGIIVMAATN 162 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG------GGTEEEEEEES
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC------CCCEEEEEecC
Confidence 999888889999999999999999999999998876432 23345678899999987653 34799999999
Q ss_pred CCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 231 FPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 231 ~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
.++.++++++| ||+..+.+++|+.++|.+|++.+++..++ .++.++..+|..+.||+++||.++|
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-------------~~~v~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-------------AEDVNLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------CTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred ChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-------------cchhhHHHHHHhcCCCcHHHHHHHH
Confidence 99999999998 99999999999999999999999987665 5677899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
++|...+.++. ...|+.+||..|+.++.+
T Consensus 230 ~~Aal~A~~~~-----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 230 NEAALLAAREG-----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcC-----------------CCeecHHHHHHHHHHHhc
Confidence 99988887643 237999999999998753
No 21
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.1e-38 Score=321.37 Aligned_cols=339 Identities=33% Similarity=0.554 Sum_probs=234.3
Q ss_pred CCCCCCchhhhccCCcchhHHHhhhcCCCchHHH--HHHHHHhcCCChHHHHHH-HHH----HhhhhccCCCCCcccccC
Q psy6716 14 PTHHLPGSLINNLTPSTPLLNIIQLNQDKPVNEM--YEAILKKLKLDPEEKKLA-RNI----LSEVLKAETNVKWADIAG 86 (371)
Q Consensus 14 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~i~G 86 (371)
.|+|+++.++..++..++...+.+.......... .............+.... ... ........+...|++++|
T Consensus 402 ~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~g 481 (806)
T 1ypw_A 402 ETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481 (806)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSC
T ss_pred hhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCcccccccccc
Confidence 4778899999888866555444332221111110 011111111111111110 000 112233456789999999
Q ss_pred hHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHH
Q psy6716 87 LDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRL 165 (371)
Q Consensus 87 ~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 165 (371)
++.+++.|.+.+.+|+.++..+...+ .++.++||+||||||||++|+++|..++.+++.++++++...|+|+....+..
T Consensus 482 l~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~ 561 (806)
T 1ypw_A 482 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561 (806)
T ss_dssp CCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHH
T ss_pred chhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHH
Confidence 99999999999999988888777665 56678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh
Q psy6716 166 LFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR 241 (371)
Q Consensus 166 ~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~ 241 (371)
+|..++...|+||||||||.+++.+... .....+++++|+..|+++.. ..+++||+|||+++.++++++|
T Consensus 562 ~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~------~~~v~vI~tTN~~~~ld~allr 635 (806)
T 1ypw_A 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST------KKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------------CCBCCCCCBSCGGGSCTTSS
T ss_pred HHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc------cCCeEEEEecCCcccCCHHHhC
Confidence 9999999999999999999998877543 24567888999999987754 4588999999999999999999
Q ss_pred --cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 242 --RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 242 --rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
||+..+++++|+.++|..|++.++++..+ ..+.+++.+|+.+.|||++||..+|++|+..++++.
T Consensus 636 pgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-------------~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 636 PGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------AKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------------CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred ccccCceeecCCCCHHHHHHHHHHHhccCCC-------------CcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987765 567788899999999999999999999999999986
Q ss_pred hhcCCccc--------ccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHHHHHhhC
Q psy6716 320 LNQNPAVA--------MKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFTDWIKWL 371 (371)
Q Consensus 320 ~~~~~~~~--------~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~ 371 (371)
+...-... ............|+.+||..|++.++|+++.++++.|++|.+.|
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~ 762 (806)
T 1ypw_A 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 762 (806)
T ss_dssp ------------------------CCTTTTTTSSCCCCCC--------------------
T ss_pred HHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 54311000 00000111124799999999999999999999999999999865
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.2e-33 Score=252.35 Aligned_cols=242 Identities=34% Similarity=0.572 Sum_probs=202.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+..+|++|+|++.+++.+.+.+.. +..+..+...+ .++.+++|+||||||||++|+++|..++.+++.++++++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4567899999999999999987754 44444444443 456789999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+.+.....+..+|..+....|+++||||+|.+.+.+... .......+..++..+++... ..+++||++||
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~vI~~tn 158 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG------NEGIIVIAATN 158 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS------SSCEEEEEEES
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc------CCCEEEEEeeC
Confidence 888888889999999988889999999999998765432 12334677888888876643 45799999999
Q ss_pred CCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 231 FPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 231 ~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
.++.+++++++ ||+..+.+++|+.++|.+|++.+++...+ .++.++..++..+.||+++||..+|
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-------------~~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------APDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------CTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-------------CccccHHHHHHHcCCCCHHHHHHHH
Confidence 99999999998 99999999999999999999999987665 5677889999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+.|...+.++. ...|+.+||..|++.+..
T Consensus 226 ~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 226 NEAALFAARGN-----------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHTT-----------------CSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-----------------CCcccHHHHHHHHHHHhc
Confidence 99998887753 237999999999998643
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=249.87 Aligned_cols=243 Identities=33% Similarity=0.505 Sum_probs=184.5
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
+..+|++++|++.+++.+.+.+.. +..+..+...+ .++.++||+||||||||++|+++|++++.+++.++++.+...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 356899999999999999988754 34444444433 5568899999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC-----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS-----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
.+.....+..+|..+....|++|||||+|.+..++... .......+..++..+++... ..+++||++||
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~~~vi~~tn 153 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT------TDHVIVLASTN 153 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT------TCCEEEEEEES
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC------CCCEEEEecCC
Confidence 88888889999999998889999999999997765332 12233456677777765532 45899999999
Q ss_pred CCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 231 FPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 231 ~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
.++.+++++++ ||+..+++++|+.++|.+|++.++...+... ..+..+..++..+.||++++|..+|
T Consensus 154 ~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-----------~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 154 RADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-----------SSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-----------THHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred ChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-----------chhhHHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999 9999999999999999999999998876521 2233457899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+.|+..+.++. ...|+.+||..|++.+.+
T Consensus 223 ~~a~~~a~~~~-----------------~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 223 NEAALHAAREG-----------------HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHHTC-------------------------CCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----------------CCCCCHHHHHHHHHHhcc
Confidence 99988877653 236889999999988643
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.4e-32 Score=263.61 Aligned_cols=241 Identities=35% Similarity=0.546 Sum_probs=203.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKW 155 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~ 155 (371)
+..+|++++|+++++..+.+.+.. +..+..+...+ ..++++||+||||||||++|+++|..++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999988754 34445555544 4567899999999999999999999999999999999999888
Q ss_pred cchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC----ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 156 YGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
.+.....++.+|..+....|+++||||||.+...+.. ..+.....+++++..|++... +..++++++||.
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~------~~~viviAatn~ 178 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------DTAIVVMAATNR 178 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS------SCCCEEEECCSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc------CccEEEEEecCC
Confidence 8888888889999887777999999999999876543 123345677888888886653 457899999999
Q ss_pred CCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHH
Q psy6716 232 PWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCR 309 (371)
Q Consensus 232 ~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~ 309 (371)
|+.+|++++| ||+..+.+++|+.++|.+|++.+++...+ .+++++..+|..+.||+++||.++|+
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-------------~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------AEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-------------CCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-------------ChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999998 89999999999999999999988876554 56788999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 310 DAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 310 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
+|+..+.++. ...|+.+||..|++++.+
T Consensus 246 ~Aa~~A~~~~-----------------~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 246 EAALLAAREG-----------------RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp HHHHHHTTTC-----------------CSSCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-----------------CCccCHHHHHHHHHHHhc
Confidence 9987776532 237999999999998754
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.98 E-value=3.5e-31 Score=237.49 Aligned_cols=241 Identities=36% Similarity=0.562 Sum_probs=195.7
Q ss_pred hhccCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 72 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
+....+..+|++++|++.++..+.+.... ...+..+...+ ..+++++|+||||||||+++++++..++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 34556788999999999999999887654 33445555544 44578999999999999999999999999999999988
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCC----ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRST----STDVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
+...+.+.....+..+|..+....|+++++||+|.+...+.. ........+..++..+++... ...++++
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~------~~~~i~~ 158 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------DTAIVVM 158 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT------TCCEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC------CCCEEEE
Confidence 877777777777888999887677899999999999765532 123345667788888876543 4578899
Q ss_pred eecCCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHH
Q psy6716 227 AATNFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di 304 (371)
++||.|+.+++++++ ||+..+.++.|+.++|.+|++.+++...+ ..+.++..+|..+.|++++||
T Consensus 159 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------~~~~~~~~la~~~~G~~~~dl 225 (254)
T 1ixz_A 159 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------AEDVDLALLAKRTPGFVGADL 225 (254)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-------------CTTCCHHHHHHTCTTCCHHHH
T ss_pred EccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-------------CcccCHHHHHHHcCCCCHHHH
Confidence 999999999999998 89999999999999999999998876554 567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHH
Q psy6716 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAV 349 (371)
Q Consensus 305 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 349 (371)
..+|++|...+.++. ...|+.+||.+|+
T Consensus 226 ~~~~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 226 ENLLNEAALLAAREG-----------------RRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc-----------------CCCcCHHHHHHHh
Confidence 999999988877643 1369999999886
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=1e-33 Score=255.96 Aligned_cols=249 Identities=37% Similarity=0.560 Sum_probs=198.0
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+...|++++|++.+++.+.+.+.. +..++.+...+ .++.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4667899999999999999998754 55666666554 556789999999999999999999999999999999998887
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh-----hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-----DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~-----~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
+.+.....++.+|..+....|++|||||+|.+...+.... ......+..|+..+++... ...+++||+||
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~v~vi~tt 158 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-----ENAPVIVLAAT 158 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-----SCSCCEEEECB
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-----CCCCEEEEEec
Confidence 7776666667788888888899999999999977543211 1122455667776665432 24468999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|.++.+++++++ ||+..+.+++|+.++|.++++.++....+ ..+.+++.++..+.||+++||..+
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------~~~~~~~~la~~~~g~~g~dl~~l 225 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-------------ANDVNLQEVAKLTAGLAGADLANI 225 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-------------CSSCCTTTTTSSSCSSCHHHHHHH
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-------------CCccCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999 99999999999999999999999987655 456678889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHH
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPED 360 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~ 360 (371)
|+.|...+..+. ...|+.+|+..|++.+.++...+.
T Consensus 226 ~~~a~~~a~~~~-----------------~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 226 INEAALLAGRNN-----------------QKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp HHHHHHTTSSSC-----------------CCSCCHHHHHTSCTTCCCCCC---
T ss_pred HHHHHHHHHHhc-----------------cCCcCHHHHHHHHHHHhhcchhhh
Confidence 999876654321 237999999999999988776543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1.3e-29 Score=230.37 Aligned_cols=238 Identities=35% Similarity=0.559 Sum_probs=193.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc
Q psy6716 75 AETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153 (371)
Q Consensus 75 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~ 153 (371)
..+..+|++++|+++++..+.+.... ...+..+...+ ..+.+++|+||||||||+++++++..++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34778999999999999999887644 33444555444 44567999999999999999999999999999999988877
Q ss_pred cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC----hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec
Q psy6716 154 KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT 229 (371)
Q Consensus 154 ~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt 229 (371)
.+.+.....+..+|..+....|+++++||+|.+...+... .......+..++..+++... ...++++++|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~------~~~~i~~a~t 185 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK------DTAIVVMAAT 185 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT------TCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC------CCCEEEEEec
Confidence 7777777778889999887778999999999987654321 12334566677777765542 4568999999
Q ss_pred CCCCCccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 230 NFPWDLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 230 n~~~~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
|.|+.+++++++ ||+..+++++|+.++|.+|++.+++...+ ..+.++..+|..+.|++++||..+
T Consensus 186 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------~~~~~~~~la~~~~G~~~~dl~~l 252 (278)
T 1iy2_A 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------AEDVDLALLAKRTPGFVGADLENL 252 (278)
T ss_dssp SCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-------------CTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-------------CcccCHHHHHHHcCCCCHHHHHHH
Confidence 999999999998 89999999999999999999998876554 567789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHH
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAV 349 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 349 (371)
|++|...+.++. ...|+.+|+.+|+
T Consensus 253 ~~~a~~~a~~~~-----------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 253 LNEAALLAAREG-----------------RRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHTT-----------------CCSBCHHHHHHHT
T ss_pred HHHHHHHHHHhC-----------------CCCcCHHHHHHHh
Confidence 999988777642 1369999999886
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.3e-28 Score=253.04 Aligned_cols=261 Identities=34% Similarity=0.562 Sum_probs=220.6
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
.+.++|++|+|++.+++.|++.+..|+.+++.+...+ .++.++||+||||||||++|+++|..++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3567899999999999999999999999999998776 667899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC-hhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC
Q psy6716 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS-TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW 233 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~ 233 (371)
+.+.....+..+|..+....|+++||||+|.+++.+... .+...+++..|+..+++... ..++++|++||+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~------~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ------RAHVIVMAATNRPN 351 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT------TSCCEEEEECSCTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc------cccEEEecccCCch
Confidence 999999999999999999999999999999999876543 35567888899999987654 45789999999999
Q ss_pred CccHHHHh--cccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 234 DLDEAFRR--RLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 234 ~l~~~l~~--rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
.+++++.+ ||+..+.++.|+.++|.++++.++....+ ..+.++..++..+.||+++++..++.+|
T Consensus 352 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-------------~~~~~l~~la~~t~g~~g~dl~~l~~ea 418 (806)
T 1ypw_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------ADDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-------------CTTCCTHHHHHSCSSCCHHHHHHHHHHH
T ss_pred hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-------------cccchhHHHHHhhcCcchHHHHHHHHHH
Confidence 99999998 99999999999999999999999887766 5677899999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccccCCCc-ccccccccHHHHHHHHHhCCCCC
Q psy6716 312 AFMNLRRYLNQNPAVAMKDIPD-KELDKAIVQADFDEAVRNCPKTV 356 (371)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~al~~~~~~~ 356 (371)
+..++++.......... .+.. ......++.+||..++....++.
T Consensus 419 ~~~a~r~~~~~i~~~~~-~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 419 ALQAIRKKMDLIDLEDE-TIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHHTTTTTSCHHH-HCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred HHHHHhhhccccchhhh-ccchhhhhhhhhhhhhhhccccccCchh
Confidence 99888875332211000 0000 01124678899999999887653
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=6e-27 Score=214.01 Aligned_cols=175 Identities=20% Similarity=0.240 Sum_probs=132.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHH----HHhCCcEEEeccchhhcc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLA----KELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~il~lDeid~l~~ 188 (371)
.++.++||+||||||||++|+++|++++.+++.++++++...+.|.....++.+|..+ +...|+||||||||.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 5568999999999999999999999999999999999999999999999999999888 455799999999999988
Q ss_pred CCCCCh---hhhhhhHHHHHHHhhccccc-----CCCCCCCCEEEEeecCCCCCccHHHHh--cccceEEecCCCHHHHH
Q psy6716 189 HRSTST---DVTRRMKSELLCQMDGLASV-----SNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRV 258 (371)
Q Consensus 189 ~~~~~~---~~~~~~~~~ll~~l~~~~~~-----~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~~i~~~~p~~~er~ 258 (371)
...... .....++..|+..|++.... .......+++||+|||.++.++++++| ||+..++ .|+.++|.
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~ 191 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 191 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHH
Confidence 544322 23456778999998854311 112235679999999999999999998 8877676 57999999
Q ss_pred HHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHH
Q psy6716 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306 (371)
Q Consensus 259 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~ 306 (371)
+|++.++... +.+.+.++..+.||++++|..
T Consensus 192 ~Il~~~~~~~-----------------~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 192 GVCTGIFRTD-----------------NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHGGG-----------------CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHhccCC-----------------CCCHHHHHHHhCCCCcccHHH
Confidence 9999888643 346889999999999988864
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=3.6e-24 Score=197.19 Aligned_cols=214 Identities=19% Similarity=0.230 Sum_probs=164.7
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhc----CCCCccEEEEcCCCchHHHHHHHHHHHcC-------CCeEEEecccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKL----RRPWKGVLLVGPPGTGKTMLAKAAATETK-------SNFFNITSSTL 151 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~----~~~~~~vLl~Gp~GtGKt~la~~la~~~~-------~~~~~v~~~~l 151 (371)
+++|++.+++.|.+.+..+.. +..+... ..+..++||+||||||||++|+++|+.++ .+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998865432 2222221 24456799999999999999999998873 38999999999
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
...++|.....+...|..+. +++|||||+|.+.+.+.. .......+..|+..++.. ..+++||+++|.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~~--------~~~~~~i~~~~~ 178 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENN--------RDDLVVILAGYA 178 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHC--------TTTCEEEEEECH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhcC--------CCCEEEEEeCCh
Confidence 99999988888888887764 899999999999765432 223456778888888753 236788888876
Q ss_pred CC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc-------cCC
Q psy6716 232 PW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL-------EGY 299 (371)
Q Consensus 232 ~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-------~g~ 299 (371)
+. .+++++++||+..+.+++|+.+++..|++.++...+.. .++..+..++... ...
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~g 246 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQ------------MTPEAETALRAYIGLRRNQPHFA 246 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCE------------ECHHHHHHHHHHHHHHTTSSSCC
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHHHHhccCCCCC
Confidence 53 24689999999999999999999999999999876642 2344466666652 233
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh
Q psy6716 300 SSADITIVCRDAAFMNLRRYLN 321 (371)
Q Consensus 300 s~~di~~l~~~a~~~~~~~~~~ 321 (371)
+++++..+++.|...+..+...
T Consensus 247 n~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 247 NARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999888887765
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=5.2e-23 Score=194.06 Aligned_cols=221 Identities=18% Similarity=0.149 Sum_probs=161.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEeccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSSTLTSK 154 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~l~~~ 154 (371)
|...|++++|++.+++.+.... ........+++++||+||||||||++|+++|+.++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~-------~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVL-------EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHH-------HHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHH-------HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4445899999999998876555 222333344578999999999999999999999875 7888887664433
Q ss_pred ccch-------------------------------------------------HHHHHHHHHHHHHH----h-----CCc
Q psy6716 155 WYGD-------------------------------------------------SEKLIRLLFLLAKE----L-----APS 176 (371)
Q Consensus 155 ~~g~-------------------------------------------------~~~~~~~~~~~a~~----~-----~~~ 176 (371)
+.+. ....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 2221 12223333333322 1 167
Q ss_pred EEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec-----------CCCCCccHHHHhcccc
Q psy6716 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT-----------NFPWDLDEAFRRRLEK 245 (371)
Q Consensus 177 il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt-----------n~~~~l~~~l~~rf~~ 245 (371)
||||||+|.+ ....++.|+..++... .+++++++. |.+..+++++++||..
T Consensus 192 vl~IDEi~~l----------~~~~~~~L~~~le~~~--------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHML----------DIESFSFLNRALESDM--------APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp EEEEESGGGS----------BHHHHHHHHHHTTCTT--------CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEhhcccc----------ChHHHHHHHHHhhCcC--------CCeeeeecccceeeeeccCCCCcccCCHHHHhhccE
Confidence 9999999999 5567778888775432 245555443 3467899999999955
Q ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy6716 246 RIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPA 325 (371)
Q Consensus 246 ~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~ 325 (371)
+.+++|+.+++..+++..+...+.. .++..++.++..+.+.+++++..+++.|...+..+.
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~------------~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~------ 314 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVE------------MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK------ 314 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCC------------BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT------
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC------
Confidence 8999999999999999998765542 345568899999985699999999999987776643
Q ss_pred ccccCCCcccccccccHHHHHHHHHhC
Q psy6716 326 VAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
...|+.+|+..|+..+
T Consensus 315 -----------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 -----------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -----------CSSBCHHHHHHHHHHS
T ss_pred -----------CCCCCHHHHHHHHHHh
Confidence 2379999999999985
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=5.9e-22 Score=184.77 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=162.8
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
..+|++++|.+.+++.+...+.. ....+.+..++||+||||||||++|+++|+.++.+|+.++|..+..
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~-------~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---- 93 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAA-------AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK---- 93 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-------HHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS----
T ss_pred CCCHHHhCChHHHHHHHHHHHHH-------HHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc----
Confidence 34799999999999999988832 1222345578999999999999999999999999999999987632
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc----------CCCCCCCCEEEEe
Q psy6716 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV----------SNEDPNKSVLILA 227 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~----------~~~~~~~~v~vI~ 227 (371)
.......+.. ...+++||||||+.+ ....+..|+..++..... .......++++|+
T Consensus 94 --~~~~~~~~~~--~~~~~vl~lDEi~~l----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 --SGDLAAILTN--LSEGDILFIDEIHRL----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp --HHHHHHHHHT--CCTTCEEEEETGGGC----------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred --hhHHHHHHHh--ccCCCEEEEechhhc----------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1122222222 235899999999999 567788888888754311 0001112589999
Q ss_pred ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 228 ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 228 ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
+||....+++++++||+..+.+++|+.+++..++..++...+.. .++..+..++..+.| +++.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~------------~~~~~~~~l~~~~~G-~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT------------CEEKAALEIAKRSRS-TPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE------------ECHHHHHHHHHTTTT-CHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHHCc-CHHHHHHH
Confidence 99999999999999999999999999999999999998876542 234457788886665 78899999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 308 CRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 308 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
++.+...+.... ...|+.+++..++...
T Consensus 227 l~~~~~~a~~~~-----------------~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 227 LKRVRDFADVND-----------------EEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHTT-----------------CSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-----------------CCccCHHHHHHHHHHh
Confidence 888765544321 1246677777766654
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=6e-22 Score=191.90 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=90.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC--CCeEEEeccccccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK--SNFFNITSSTLTSK 154 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~--~~~~~v~~~~l~~~ 154 (371)
+...|++++|++.+++.+...+. .+.....+++++||+||||||||++|+++|+.++ .+|+.++++.+...
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~-------~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVE-------LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHH-------HHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHH-------HHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 44568999999999999888772 2233335668999999999999999999999999 89999999999999
Q ss_pred ccchHHHHHHHHHHHH---HHhCCcEEEeccchhhccCCC
Q psy6716 155 WYGDSEKLIRLLFLLA---KELAPSIVFFDEIDSMCSHRS 191 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a---~~~~~~il~lDeid~l~~~~~ 191 (371)
+.|+.+. +...|..+ +...|++|||||+|.+++++.
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999887 88899988 677799999999999986653
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=5.9e-21 Score=176.76 Aligned_cols=198 Identities=17% Similarity=0.163 Sum_probs=147.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
..+|++++|.+..++.+...+.. ....+.++.++||+||||||||++|+++|+.++.+++.++|+.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~-------~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEA-------AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-------HHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHH-------HHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----
Confidence 34789999999999999988732 1222344578999999999999999999999999999999887632
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCC-------CCCCEEEEe
Q psy6716 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNED-------PNKSVLILA 227 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~-------~~~~v~vI~ 227 (371)
...+...+.. ....+++|||||+|.+ ....+..|+..++..... +... ...++++|+
T Consensus 77 --~~~l~~~l~~-~~~~~~~l~lDEi~~l----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 77 --PGDLAAILAN-SLEEGDILFIDEIHRL----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --HHHHHHHHTT-TCCTTCEEEETTTTSC----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --hHHHHHHHHH-hccCCCEEEEECCccc----------ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1112222221 0135789999999998 455677777777643210 0000 123678999
Q ss_pred ecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHH
Q psy6716 228 ATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307 (371)
Q Consensus 228 ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l 307 (371)
+||.+..+++.+.+||...+.+++|+.+++..++..++...+.. .++..+..++..+.| +++.+..+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~G-~~r~l~~~ 210 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR------------ITEEAALEIGRRSRG-TMRVAKRL 210 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC------------CCHHHHHHHHHHSCS-CHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHccC-CHHHHHHH
Confidence 99999999999999998899999999999999999998766542 344567889999876 78888888
Q ss_pred HHHHH
Q psy6716 308 CRDAA 312 (371)
Q Consensus 308 ~~~a~ 312 (371)
++.+.
T Consensus 211 l~~~~ 215 (324)
T 1hqc_A 211 FRRVR 215 (324)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87664
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=8.5e-21 Score=174.43 Aligned_cols=250 Identities=22% Similarity=0.229 Sum_probs=166.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhh--hcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccchH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFD--KLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYGDS 159 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~--~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g~~ 159 (371)
+++|++.+++.+...+..+........ ..+.++.++||+||||||||++|+++|+.++.+++.++|+.+.. .+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 589999999999988744211111000 11234578999999999999999999999999999999998865 444432
Q ss_pred -HHHHHHHHHHH-----HHhCCcEEEeccchhhccCCCCCh--hhhhhhHHHHHHHhhccccc--CCCCCCCCEEEEee-
Q psy6716 160 -EKLIRLLFLLA-----KELAPSIVFFDEIDSMCSHRSTST--DVTRRMKSELLCQMDGLASV--SNEDPNKSVLILAA- 228 (371)
Q Consensus 160 -~~~~~~~~~~a-----~~~~~~il~lDeid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~--~~~~~~~~v~vI~t- 228 (371)
...+..++..+ ....++||||||+|.+.+...... .....+++.|+..+++.... .......++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 23344444321 112368999999999987653222 22334578888888754211 00112346788888
Q ss_pred ---cCCCCCccHHHHhcccceEEecCCCHHHHHHHHHH----HHhc-------CCCCcchhhhhhcccCCCcccHHHHHH
Q psy6716 229 ---TNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTI----FLQN-------VKVDKDVNIEVLNVKVDKDVNIEVLAE 294 (371)
Q Consensus 229 ---tn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~la~ 294 (371)
++.+..+++++.+||+..+.+++|+.+++..|++. +... .+. ... .++..++.++.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~a~~~l~~ 245 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGV---------NIA-FTTDAVKKIAE 245 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTC---------EEE-ECHHHHHHHHH
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------eec-cCHHHHHHHHH
Confidence 45677899999999998899999999999999983 2211 111 011 24445778888
Q ss_pred Hcc-------CCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 295 RLE-------GYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 295 ~~~-------g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
.+. +.+.+.+..+++.+...+..+..... .....|+.+|+..++....
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~-----------~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN-----------GQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT-----------TCEEEECHHHHHHHTCSSS
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc-----------CCEEEEeeHHHHHHHHhhh
Confidence 773 45889999999887655443331110 0122599999999998764
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.85 E-value=1e-20 Score=170.96 Aligned_cols=206 Identities=21% Similarity=0.199 Sum_probs=139.5
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhc-CCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc-ccccchH
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKL-RRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT-SKWYGDS 159 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~-~~~~g~~ 159 (371)
..++|.++..+.+....... ....... ..++.++||+||||||||++|+++|+..+.+++.+++++.. +...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45788887777666531100 0111211 35567899999999999999999999999999999887532 2112233
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccH-H
Q psy6716 160 EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE-A 238 (371)
Q Consensus 160 ~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~-~ 238 (371)
...+..+|..+....+++|||||+|.+++.+..+......++..|...++.... ...+++||+|||.++.+++ .
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-----~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-----QGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-----TTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-----CCCCEEEEEecCChhhcchhh
Confidence 356677888887777899999999999876554444445566666666654322 3457889999999887887 6
Q ss_pred HHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCC----CHHHHHHHHHHH
Q psy6716 239 FRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGY----SSADITIVCRDA 311 (371)
Q Consensus 239 l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~----s~~di~~l~~~a 311 (371)
+.+||...+.+|+++. |.++...+..... .++.++..+++.+.|+ +.+++..+++.|
T Consensus 185 l~~rf~~~i~~p~l~~--r~~i~~i~~~~~~--------------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIAT--GEQLLEALELLGN--------------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp CTTTSSEEEECCCEEE--HHHHHHHHHHHTC--------------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred hhcccceEEcCCCccH--HHHHHHHHHhcCC--------------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 7779977777765554 3344443333222 3455688999999987 566666666544
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.84 E-value=7.6e-21 Score=178.99 Aligned_cols=233 Identities=19% Similarity=0.280 Sum_probs=152.8
Q ss_pred ccChHHHHHHHHHHhhccCCChHHh---hhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc-ccchH
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYF---DKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK-WYGDS 159 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~---~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~-~~g~~ 159 (371)
++|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++|+.+... ++|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 7999999999998874321111000 1112356789999999999999999999999999999999988744 66654
Q ss_pred -HHHHHHHHHHH----HHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhcccc-----cCCCCC------
Q psy6716 160 -EKLIRLLFLLA----KELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLAS-----VSNEDP------ 219 (371)
Q Consensus 160 -~~~~~~~~~~a----~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~~-----~~~~~~------ 219 (371)
...+..++..+ ....++||||||+|.+.+.+.... .....+++.|+..|++... .+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45556666554 344589999999999987654432 2223489999999984311 011111
Q ss_pred --CCCEEEEeecCCC----------CC-----------------------------------ccHHHHhcccceEEecCC
Q psy6716 220 --NKSVLILAATNFP----------WD-----------------------------------LDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 220 --~~~v~vI~ttn~~----------~~-----------------------------------l~~~l~~rf~~~i~~~~p 252 (371)
..++++|++++.. .. +.+++.+||+..+.+++|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 2344444444431 11 688999999999999999
Q ss_pred CHHHHHHHHHH----HHhcCCCCcchhhhhhcccCCCcccHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 253 DQATRVSLLTI----FLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE--RLEGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 253 ~~~er~~il~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
+.+++.+|+.. ++..+..... ....... .++..++.|+. ....+..++|+++++.+...++.+.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~--~~~~~l~-~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFN--LEGVDLE-FRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHH--TTTCEEE-ECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--hcCceEE-ECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999886 3332110000 0000111 23445677775 3455667999999999988877765
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=9.2e-20 Score=175.44 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=151.3
Q ss_pred CCCCCccccc-C--hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEe
Q psy6716 76 ETNVKWADIA-G--LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNIT 147 (371)
Q Consensus 76 ~~~~~~~~i~-G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~ 147 (371)
.+..+|++++ | .......+..... ..+. +.+++|+||||+|||++|+++++.+ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~----------~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAK----------HPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHH----------STTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHh----------CCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3456888887 5 3334444444431 1122 4679999999999999999999987 78899999
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 148 SSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 148 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
+..+...+.+.........|.......+.+|||||++.+..+ ...+..|+..++.... ....+||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~--------~~~q~~l~~~l~~l~~------~~~~iIit 233 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK--------TGVQTELFHTFNELHD------SGKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC--------HHHHHHHHHHHHHHHT------TTCEEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC--------hHHHHHHHHHHHHHHH------CCCeEEEE
Confidence 888754433322211111232222225899999999999532 1345566666654432 22445555
Q ss_pred ecCCCCC---ccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHH
Q psy6716 228 ATNFPWD---LDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSA 302 (371)
Q Consensus 228 ttn~~~~---l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~ 302 (371)
+.+.+.. +++.+++||. ..+.+++|+.++|..+++..+...++. .++..++.++..+.| +.+
T Consensus 234 t~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~------------i~~e~l~~la~~~~g-n~R 300 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE------------LPEEVLNFVAENVDD-NLR 300 (440)
T ss_dssp ESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC------------CCTTHHHHHHHHCCS-CHH
T ss_pred ECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHhcCC-CHH
Confidence 5554543 7899999985 678999999999999999988754432 334458899999876 899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 303 DITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 303 di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
++..+++.+...+.... ..|+.+++.++++...
T Consensus 301 ~l~~~L~~~~~~a~~~~------------------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 301 RLRGAIIKLLVYKETTG------------------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHHHHSS------------------SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCCHHHHHHHHHHHh
Confidence 99999998876554321 2588888888888765
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=8.9e-21 Score=187.01 Aligned_cols=241 Identities=18% Similarity=0.203 Sum_probs=151.7
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc--------
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-------- 153 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-------- 153 (371)
.+++|++.+++.+.+.+...... ...++..++|+||||||||++|+++|..++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~------~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT------KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS------SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc------ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 45899999999998776432111 1124567999999999999999999999999999999877543
Q ss_pred -cccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-------CCCCCCCCEEE
Q psy6716 154 -KWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-------SNEDPNKSVLI 225 (371)
Q Consensus 154 -~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~v~v 225 (371)
.+.|.....+...|..+....| +|||||||.+.+... ...++.|+..|+..... .......+++|
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc------cCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 3444444455556665544444 999999999965432 12456677777643321 00111257899
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhc-----CCCCcchhhhhhcccCCCcccHHHHHHH-ccCC
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQN-----VKVDKDVNIEVLNVKVDKDVNIEVLAER-LEGY 299 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~g~ 299 (371)
|+|||.++.+++++++|| .++.++.|+.+++..|+..++.. .++.. ..+. .++..+..++.. +...
T Consensus 228 I~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~------~~i~-i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKK------SNLQ-LRDQAILDIIRYYTREA 299 (543)
T ss_dssp EEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCG------GGCE-ECHHHHHHHHHHHCCCS
T ss_pred EeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCc------cccc-CCHHHHHHHHHhCChhh
Confidence 999999999999999999 57999999999999999887732 22210 0111 123345565553 3334
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCC
Q psy6716 300 SSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 300 s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
..++|+..+..+...+..+.+.... ....|+.+|+..++..-..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~-----------~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEER-----------KRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCC-----------SCCEECTTTTHHHHCSCCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCC-----------cceecCHHHHHHHhCCccc
Confidence 5566666666655555444433211 1236888999988876543
No 40
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=7.2e-20 Score=176.02 Aligned_cols=218 Identities=20% Similarity=0.204 Sum_probs=149.4
Q ss_pred CCCcccccChHHHH---HHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc
Q psy6716 78 NVKWADIAGLDDAK---DLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154 (371)
Q Consensus 78 ~~~~~~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~ 154 (371)
..+|++++|++.++ ..|...+ ... .. .++||+||||||||++|+++|+.++.+|+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i----------~~~-~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-- 87 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAI----------EAG-HL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-- 87 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHH----------HHT-CC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC--
T ss_pred CCCHHHhCCcHHHHhchHHHHHHH----------HcC-CC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC--
Confidence 35789999999999 7777777 221 22 5799999999999999999999999999999875432
Q ss_pred ccchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeec-
Q psy6716 155 WYGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAAT- 229 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~tt- 229 (371)
...++.++..+. ...+++|||||||.+ ....+..|+..++. ..+++|++|
T Consensus 88 -----~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l----------~~~~q~~LL~~le~----------~~v~lI~att 142 (447)
T 3pvs_A 88 -----VKEIREAIERARQNRNAGRRTILFVDEVHRF----------NKSQQDAFLPHIED----------GTITFIGATT 142 (447)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHT----------TSCEEEEEES
T ss_pred -----HHHHHHHHHHHHHhhhcCCCcEEEEeChhhh----------CHHHHHHHHHHHhc----------CceEEEecCC
Confidence 122334444433 335789999999999 44556677777753 245666666
Q ss_pred -CCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 230 -NFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 230 -n~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
|....+++++++|+ .++.+++|+.+++..++..++........ ..... .++..++.++..+.| +.+.+..++
T Consensus 143 ~n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~----~~~~~-i~~~al~~L~~~~~G-d~R~lln~L 215 (447)
T 3pvs_A 143 ENPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG----GQDIV-LPDETRRAIAELVNG-DARRALNTL 215 (447)
T ss_dssp SCGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSST----TSSEE-CCHHHHHHHHHHHCS-CHHHHHHHH
T ss_pred CCcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc----cccCc-CCHHHHHHHHHHCCC-CHHHHHHHH
Confidence 33357899999999 47889999999999999999876321100 00111 344568888888776 788888888
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTV 356 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 356 (371)
+.+...+... ......|+.+++.+++.......
T Consensus 216 e~a~~~a~~~---------------~~~~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 216 EMMADMAEVD---------------DSGKRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp HHHHHHSCBC---------------TTSCEECCHHHHHHHHTCCCCC-
T ss_pred HHHHHhcccc---------------cCCCCccCHHHHHHHHhhhhhcc
Confidence 8765432110 00013699999999998775544
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=5.6e-19 Score=153.79 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=146.4
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEecccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTL 151 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l 151 (371)
....|++++|.+..++.+...+. .. ...+++|+||||||||++|+++++.+ ...++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVE----------RK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHH----------TT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHh----------CC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34578899999999999998883 21 22359999999999999999999875 346788877654
Q ss_pred cccccchHHHHHHHHHHHHH------HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 152 TSKWYGDSEKLIRLLFLLAK------ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~------~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
... ..+...+.... ...+.+|+|||+|.+ ....+..|+..++.. ..++.+
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~l~~~l~~~--------~~~~~~ 135 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL----------TADAQAALRRTMEMY--------SKSCRF 135 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS----------CHHHHHHHHHHHHHT--------TTTEEE
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc----------CHHHHHHHHHHHHhc--------CCCCeE
Confidence 321 11112222221 134789999999998 334566677666543 236788
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|++||.+..+++.+.+||. .+.+++|+.++...++..++...+.. .++..+..++..+.| +++.+.
T Consensus 136 i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~g-~~r~l~ 201 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVK------------ITEDGLEALIYISGG-DFRKAI 201 (226)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCC------------BCHHHHHHHHHHHTT-CHHHHH
T ss_pred EEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-CHHHHH
Confidence 8899999899999999996 89999999999999999988765542 234457788888776 777777
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHH
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVR 350 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 350 (371)
.+++.++..+ ..|+.+|+.+++.
T Consensus 202 ~~l~~~~~~~----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 202 NALQGAAAIG----------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHTC----------------------SCBCHHHHHHHHH
T ss_pred HHHHHHHhcC----------------------ceecHHHHHHHhc
Confidence 7766554221 1689999998875
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=4.8e-19 Score=164.07 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=137.5
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 77 TNVKWADIA-G--LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 77 ~~~~~~~i~-G--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
+..+|++++ | .......+...+.. .+..+.+++|+||||||||++|+++++.+ +.+++++++..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~----------~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALEN----------LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHT----------TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhC----------cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456788886 4 55556666655522 22244689999999999999999999988 88999999988
Q ss_pred ccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+...+.+.........|.... ..+++|||||++.+..+ ...+..++..++.... ....+|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~--------~~~~~~l~~~l~~~~~------~~~~iii~~~~ 140 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK--------ERTQIEFFHIFNTLYL------LEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC--------HHHHHHHHHHHHHHHH------TTCEEEEEESS
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC--------hHHHHHHHHHHHHHHH------CCCeEEEEecC
Confidence 765444333222112222222 24889999999998432 1344555555554332 22456666666
Q ss_pred CCC---CccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 231 FPW---DLDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 231 ~~~---~l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
.+. .+++.+.+||. ..+.+++ +.+++..+++..+...+.. .++..++.++..+ | +.+++.
T Consensus 141 ~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~------------l~~~~l~~l~~~~-g-~~r~l~ 205 (324)
T 1l8q_A 141 HPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE------------LRKEVIDYLLENT-K-NVREIE 205 (324)
T ss_dssp CGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHC-S-SHHHHH
T ss_pred ChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHhC-C-CHHHHH
Confidence 665 68899999996 6788888 9999999999999865542 3455688999999 5 788888
Q ss_pred HHHHHHHHH
Q psy6716 306 IVCRDAAFM 314 (371)
Q Consensus 306 ~l~~~a~~~ 314 (371)
.+++.+...
T Consensus 206 ~~l~~~~~~ 214 (324)
T 1l8q_A 206 GKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888776544
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=2.1e-18 Score=163.18 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=152.4
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEecc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSS 149 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~ 149 (371)
...++++|.+..++.+...+.... .+..+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 345789999999999998772211 02345689999999999999999999987 7889999987
Q ss_pred cccccc----------------cch-HHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcc
Q psy6716 150 TLTSKW----------------YGD-SEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL 211 (371)
Q Consensus 150 ~l~~~~----------------~g~-~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~ 211 (371)
...... .+. .......++...... .+.+|+|||+|.+.... .....+..++..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQEL 162 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhc
Confidence 643211 011 222233444443322 26799999999994321 0123333344433222
Q ss_pred cccCCCCCCCCEEEEeecCCC---CCccHHHHhcccc-eEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 212 ASVSNEDPNKSVLILAATNFP---WDLDEAFRRRLEK-RIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 212 ~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
.. ..++.+|++||.+ ..+++.+.+||.. .+.+++|+.+++.+++...+...... .. .++.
T Consensus 163 ~~------~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~---------~~-~~~~ 226 (387)
T 2v1u_A 163 GD------RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP---------GV-LDPD 226 (387)
T ss_dssp -----------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT---------TT-BCSS
T ss_pred CC------CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC---------CC-CCHH
Confidence 10 3467889999887 6789999999975 89999999999999999988641100 01 3344
Q ss_pred cHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 288 NIEVLAERLE---GYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 288 ~~~~la~~~~---g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
.++.++..+. | .++.+..+++.|+..+..+. ...|+.+|+..|+...
T Consensus 227 ~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~-----------------~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 227 VVPLCAALAAREHG-DARRALDLLRVAGEIAERRR-----------------EERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTT-----------------CSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHH
Confidence 5778888887 6 78888899998876655432 1267888888887765
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.81 E-value=3.8e-19 Score=164.70 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=135.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYG 157 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g 157 (371)
..+|++++|++.+++.+...+. .+..++.+|++||||||||++|+++++.++.+++.++++...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 3478999999999999998883 224446688889999999999999999999999999987642
Q ss_pred hHHHHHHHHHHHHHHh-----CCcEEEeccchhhccCCCCChhhh-hhhHHHHHHHhhcccccCCCCCCCCEEEEeecCC
Q psy6716 158 DSEKLIRLLFLLAKEL-----APSIVFFDEIDSMCSHRSTSTDVT-RRMKSELLCQMDGLASVSNEDPNKSVLILAATNF 231 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~~-----~~~il~lDeid~l~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~ 231 (371)
...++..+...... .+.+|||||+|.+ . ...++.|+..++... .++.+|++||.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l----------~~~~~~~~L~~~le~~~--------~~~~iI~~~n~ 145 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS----------GLAESQRHLRSFMEAYS--------SNCSIIITANN 145 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG----------GGHHHHHHHHHHHHHHG--------GGCEEEEEESS
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCccc----------CcHHHHHHHHHHHHhCC--------CCcEEEEEeCC
Confidence 22333333332222 4689999999999 4 556777888776543 35688999999
Q ss_pred CCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 232 PWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 232 ~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
+..+++++++|| ..+.+++|+.++|.++++.++..... ........+.+...++.++..+.| +.+++...++.+
T Consensus 146 ~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 146 IDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTE----ICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp GGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHH----HHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred ccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH----HHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 999999999999 57999999999987776665543210 000111122221557888888776 444444444443
No 45
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=3.5e-18 Score=162.34 Aligned_cols=262 Identities=24% Similarity=0.282 Sum_probs=171.2
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcC--CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccc-cccch-
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS-KWYGD- 158 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~-~~~g~- 158 (371)
+|+|++.+++.|...+..+..+...+.... .++.++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 589999999999988866544333333222 35678999999999999999999999999999999988776 46663
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q psy6716 159 SEKLIRLLFLLA-------------------------------------------------------------------- 170 (371)
Q Consensus 159 ~~~~~~~~~~~a-------------------------------------------------------------------- 170 (371)
.+..++.+|..+
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 344443333222
Q ss_pred ----------------------------------------------------------------------HH-hCCcEEE
Q psy6716 171 ----------------------------------------------------------------------KE-LAPSIVF 179 (371)
Q Consensus 171 ----------------------------------------------------------------------~~-~~~~il~ 179 (371)
.. ...++|+
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 01 1246899
Q ss_pred eccchhhccCCCCCh-hh-hhhhHHHHHHHhhccccc--CCCCCCCCEEEEeec----CCCCCccHHHHhcccceEEecC
Q psy6716 180 FDEIDSMCSHRSTST-DV-TRRMKSELLCQMDGLASV--SNEDPNKSVLILAAT----NFPWDLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 180 lDeid~l~~~~~~~~-~~-~~~~~~~ll~~l~~~~~~--~~~~~~~~v~vI~tt----n~~~~l~~~l~~rf~~~i~~~~ 251 (371)
+||||++..+..+.. +. ...+|..||..|++.... .......++++|+|. +.+.++.|+|+.||..++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 999999987643222 22 334888999999864221 001124578899887 2344566899999998899999
Q ss_pred CCHHHHHHHHH--------HHHhcCCCCcchhhhhhcccCCCcccHHHHHHH-------ccCCCHHHHHHHHHHHHHHHH
Q psy6716 252 PDQATRVSLLT--------IFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER-------LEGYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 252 p~~~er~~il~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-------~~g~s~~di~~l~~~a~~~~~ 316 (371)
++.++..+|+. .+...++... ..+. .++..+..+++. +...-.+-|+.++..+.....
T Consensus 336 lt~~e~~~Il~~~~~~l~~q~~~~~~~~~------~~l~-~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~ 408 (444)
T 1g41_A 336 LSAADFERILTEPHASLTEQYKALMATEG------VNIA-FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 408 (444)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTT------CEEE-ECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHhcccC------ceEE-ECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHH
Confidence 99999999983 1211111100 0111 233446667763 355566788888887766666
Q ss_pred HHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHH
Q psy6716 317 RRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFT 365 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 365 (371)
.+..... .....|+.+++...+. +.+..+++.+|.
T Consensus 409 ~~~~~~~-----------~~~~~i~~~~v~~~l~---~~~~~~dl~~~~ 443 (444)
T 1g41_A 409 FSASDMN-----------GQTVNIDAAYVADALG---EVVENEDLSRFI 443 (444)
T ss_dssp HHGGGCT-----------TCEEEECHHHHHHHHT---TTTTCHHHHHHH
T ss_pred hhccccC-----------CCeEEEeHHHHHHhcC---ccccCCChhccc
Confidence 5543211 0124689988887664 446677777773
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=5.6e-19 Score=155.82 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=144.8
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC---------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--------------- 142 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--------------- 142 (371)
...+++++|.+..++.+...+. . +..+..++|+||+|+|||++++++++.+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~----------~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLS----------L-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHH----------H-TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 3467889999999999998872 2 2333579999999999999999999876432
Q ss_pred ---------eEEEecccccccccchHHHHHHHHHHHHH----HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 143 ---------FFNITSSTLTSKWYGDSEKLIRLLFLLAK----ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 143 ---------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
++.++... ......+..++.... ...+.+|+|||+|.+ ....+..|+..++
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l----------~~~~~~~l~~~l~ 151 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE 151 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS----------CHHHHHHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc----------cHHHHHHHHHHHh
Confidence 12222111 011222333333322 123689999999998 4456677777775
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
.. ..++.+|++|+.+..+++.+.+|+ ..+.+++|+.++..+++..++...+.. .++..+
T Consensus 152 ~~--------~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~------------~~~~~~ 210 (250)
T 1njg_A 152 EP--------PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIA------------HEPRAL 210 (250)
T ss_dssp SC--------CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCC------------BCHHHH
T ss_pred cC--------CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCC------------CCHHHH
Confidence 42 346788899998888999999997 789999999999999999998765432 334457
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHH
Q psy6716 290 EVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAV 349 (371)
Q Consensus 290 ~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al 349 (371)
..+++.+.| +++.+..+++.|...+ ...|+.+|+++++
T Consensus 211 ~~l~~~~~G-~~~~~~~~~~~~~~~~---------------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 211 QLLARAAEG-SLRDALSLTDQAIASG---------------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHTTT---------------------TSSBCHHHHHHHS
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHhcc---------------------CceecHHHHHHHh
Confidence 889999987 8999999988763110 1268999998875
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.80 E-value=2e-18 Score=152.48 Aligned_cols=206 Identities=15% Similarity=0.092 Sum_probs=143.2
Q ss_pred CCCcccccC---hHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccc
Q psy6716 78 NVKWADIAG---LDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTL 151 (371)
Q Consensus 78 ~~~~~~i~G---~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l 151 (371)
..+|++++| ...+...+...+.. ....+++|+||||||||++|++++..+. .+++.+++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 357888886 34666666665521 2347899999999999999999998764 67888998876
Q ss_pred cccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCE-EEEeecC
Q psy6716 152 TSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSV-LILAATN 230 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v-~vI~ttn 230 (371)
........ . ....+.+|+|||++.+... ...+..|+..++.... ...+ +|++++.
T Consensus 92 ~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~--------~~~~~~l~~~l~~~~~------~~~~~ii~~~~~ 147 (242)
T 3bos_A 92 ASISTALL--------E--GLEQFDLICIDDVDAVAGH--------PLWEEAIFDLYNRVAE------QKRGSLIVSASA 147 (242)
T ss_dssp GGSCGGGG--------T--TGGGSSEEEEETGGGGTTC--------HHHHHHHHHHHHHHHH------HCSCEEEEEESS
T ss_pred HHHHHHHH--------H--hccCCCEEEEeccccccCC--------HHHHHHHHHHHHHHHH------cCCCeEEEEcCC
Confidence 65432111 1 1134789999999998432 1124455555544332 1233 4444444
Q ss_pred CCC---CccHHHHhccc--ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 231 FPW---DLDEAFRRRLE--KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 231 ~~~---~l~~~l~~rf~--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
.+. .+.+.+.+||. ..+.+++|+.+++.+++..++...+.. .++..++.++..+.| +.+++.
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~g-~~r~l~ 214 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ------------LPEDVGRFLLNRMAR-DLRTLF 214 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC------------CCHHHHHHHHHHTTT-CHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHccC-CHHHHH
Confidence 443 45688999885 789999999999999999998765542 344567888988876 889999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHH
Q psy6716 306 IVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVR 350 (371)
Q Consensus 306 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 350 (371)
.+++.+...+..+. ..|+.+++..+++
T Consensus 215 ~~l~~~~~~a~~~~------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 215 DVLDRLDKASMVHQ------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHT------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC------------------CCCcHHHHHHHhh
Confidence 99998877664432 2699999998875
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=2.6e-19 Score=164.70 Aligned_cols=224 Identities=18% Similarity=0.223 Sum_probs=152.6
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW---- 155 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~---- 155 (371)
+++|++.+++.+...+..... .......|..++||+||||||||++|+++|..+ +.+++.++|+.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH---TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHH
Confidence 588999999999988832100 001112344579999999999999999999987 4579999998765421
Q ss_pred -cchH----H-HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC---CCCCCCEEEE
Q psy6716 156 -YGDS----E-KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN---EDPNKSVLIL 226 (371)
Q Consensus 156 -~g~~----~-~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~~~~~~v~vI 226 (371)
+|.. . .....+........+++|||||+|.+ ....+..|+..|+....... .....++++|
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI 164 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVII 164 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEE
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEE
Confidence 1100 0 00012223333445689999999999 66788889998875432211 1112467799
Q ss_pred eecCC--------------------------CCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhc
Q psy6716 227 AATNF--------------------------PWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN 280 (371)
Q Consensus 227 ~ttn~--------------------------~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~ 280 (371)
+|||. ...+++++++||+..+.+++|+.+++..|++.++......... ....
T Consensus 165 ~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~--~~~~ 242 (311)
T 4fcw_A 165 MTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE--KRIS 242 (311)
T ss_dssp EEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT--TTCE
T ss_pred EecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh--CCcE
Confidence 99998 3467889999999999999999999999999988764211000 0001
Q ss_pred ccCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 281 VKVDKDVNIEVLAERLE--GYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 281 ~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
.. .++..++.++.... ..+.++|..+++.+...++.+.+..
T Consensus 243 ~~-~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 243 LE-LTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp EE-ECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred EE-eCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 11 33455778888766 5688999999999988888776543
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=3e-18 Score=159.16 Aligned_cols=225 Identities=19% Similarity=0.160 Sum_probs=147.6
Q ss_pred cccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc------cccc
Q psy6716 81 WADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST------LTSK 154 (371)
Q Consensus 81 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~------l~~~ 154 (371)
+.+++|++.+++.+...+. . ..++||+||||||||++|+++|+.++.+++.+++.. +.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~----------~----~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGIC----------T----GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHH----------H----TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHH----------c----CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 4579999999998887762 1 257999999999999999999999999999988742 1111
Q ss_pred ccchHHHHHHHHHHHHHHhC---CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-CC--CCCCCCEEEEee
Q psy6716 155 WYGDSEKLIRLLFLLAKELA---PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-SN--EDPNKSVLILAA 228 (371)
Q Consensus 155 ~~g~~~~~~~~~~~~a~~~~---~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~--~~~~~~v~vI~t 228 (371)
....... ..+. .... .++|||||++.+ ....++.|+..++..... .+ ...+.+++||+|
T Consensus 92 ~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 92 MIYNQHK---GNFE--VKKGPVFSNFILADEVNRS----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEETTT---TEEE--EEECTTCSSEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred eeecCCC---CceE--eccCcccccEEEEEccccC----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 1100000 0000 0001 379999999998 566777888887743211 00 012446788888
Q ss_pred cCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcc---h--------hhhhhcccCCCcccHHHH
Q psy6716 229 TNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKD---V--------NIEVLNVKVDKDVNIEVL 292 (371)
Q Consensus 229 tn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~l 292 (371)
+|..+ .+++++++||...+.++.|+.+++.+|++..+........ . ........ .++..++.+
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~-~~~~~~~~i 235 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVT-ISESLEKYI 235 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCB-CCHHHHHHH
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCC-CCHHHHHHH
Confidence 88553 3899999999878999999999999999988765321100 0 00001111 122234444
Q ss_pred HHHc-------------------cCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 293 AERL-------------------EGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 293 a~~~-------------------~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
+... .|.|++.+..+++.|...+..+. ...++.+|+..++..+
T Consensus 236 ~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g-----------------~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 236 IELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN-----------------RDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHH
Confidence 4422 25689999888888776665432 2368999999988764
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=8.5e-19 Score=163.95 Aligned_cols=235 Identities=16% Similarity=0.117 Sum_probs=143.4
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE----Eecccc
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN----ITSSTL 151 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~----v~~~~l 151 (371)
.+..+|++++|++.+++.+...... ....++||+||||||||++|+++|+.++..... ++|...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 3566899999999988765544321 122469999999999999999999988631100 122211
Q ss_pred c-----------------------------ccccchHHHHHHHHHHHH---------HHhCCcEEEeccchhhccCCCCC
Q psy6716 152 T-----------------------------SKWYGDSEKLIRLLFLLA---------KELAPSIVFFDEIDSMCSHRSTS 193 (371)
Q Consensus 152 ~-----------------------------~~~~g~~~~~~~~~~~~a---------~~~~~~il~lDeid~l~~~~~~~ 193 (371)
. ..+.|... +...+... ....+++|||||+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------- 156 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL------- 156 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC-------
Confidence 1 01111100 01111111 1223789999999999
Q ss_pred hhhhhhhHHHHHHHhhcc----cccCCC-CCCCCEEEEeecCCCC-CccHHHHhcccceEEecCC-CHHHHHHHHHHHHh
Q psy6716 194 TDVTRRMKSELLCQMDGL----ASVSNE-DPNKSVLILAATNFPW-DLDEAFRRRLEKRIYVPIP-DQATRVSLLTIFLQ 266 (371)
Q Consensus 194 ~~~~~~~~~~ll~~l~~~----~~~~~~-~~~~~v~vI~ttn~~~-~l~~~l~~rf~~~i~~~~p-~~~er~~il~~~~~ 266 (371)
....+..|+..++.. ...+.. ..+.++++|+|+|... .+++++++||+..+.+++| +.+++.+|++..+.
T Consensus 157 ---~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 157 ---EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDT 233 (350)
T ss_dssp ---CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHh
Confidence 556778888877642 111110 1134789999999754 8999999999888999988 67778788877432
Q ss_pred cCCCC---------------cch---hhhhhcccCCCcccHHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy6716 267 NVKVD---------------KDV---NIEVLNVKVDKDVNIEVLAERLEGY---SSADITIVCRDAAFMNLRRYLNQNPA 325 (371)
Q Consensus 267 ~~~~~---------------~~~---~~~~~~~~~~~~~~~~~la~~~~g~---s~~di~~l~~~a~~~~~~~~~~~~~~ 325 (371)
..+.. ..+ ........ .++..++.++....+. +.+.+..+++.|...+..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~------ 306 (350)
T 1g8p_A 234 YDADPKAFLEEWRPKDMDIRNQILEARERLPKVE-APNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG------ 306 (350)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCB-CCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT------
T ss_pred cccCchhhccccccchHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC------
Confidence 11000 000 00001111 3344466666665442 56888888888776665432
Q ss_pred ccccCCCcccccccccHHHHHHHHHhC
Q psy6716 326 VAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 326 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
...|+.+|+..|+..+
T Consensus 307 -----------~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 -----------ATAVGRDHLKRVATMA 322 (350)
T ss_dssp -----------CSBCCHHHHHHHHHHH
T ss_pred -----------CCcCCHHHHHHHHHHH
Confidence 1268999999988764
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.79 E-value=1.2e-18 Score=178.93 Aligned_cols=220 Identities=17% Similarity=0.196 Sum_probs=153.6
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccch
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGD 158 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~ 158 (371)
.+++|++.+++.+...+...... ......|..++||+||||||||++|+++|..+ +.+++.++|+.+...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 45899999999999888332100 00111333469999999999999999999987 6789999999998776554
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEEeecCCCCC-
Q psy6716 159 SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLILAATNFPWD- 234 (371)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI~ttn~~~~- 234 (371)
...+....+...++|||||||+.+ +..+++.|+..|+..... +......+++||+|||.+..
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKA----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGS----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred ----cchhhHHHHhCCCeEEEEeCcccc----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 112233344556789999999998 678899999999864322 22234568899999997644
Q ss_pred -----------ccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHH--ccCCCH
Q psy6716 235 -----------LDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAER--LEGYSS 301 (371)
Q Consensus 235 -----------l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~g~s~ 301 (371)
+.+.+++||+..+.+++|+.+++..|+..++......... ...... .++..++.|+.. ...+..
T Consensus 634 ~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~--~~~~~~-~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 634 KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKE--QDLSIE-LTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHT--TTCEEE-ECHHHHHHHHGGGCCTTTTT
T ss_pred HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHh--CCCeEE-ECHHHHHHHHHhCCCCCCCC
Confidence 7899999999899999999999999999988754211000 000111 234456677664 344677
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy6716 302 ADITIVCRDAAFMNLRRYLN 321 (371)
Q Consensus 302 ~di~~l~~~a~~~~~~~~~~ 321 (371)
+.|+.+++.+....+.+.+-
T Consensus 711 R~L~~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEELL 730 (758)
T ss_dssp TTHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 89999999888877776653
No 52
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.78 E-value=3.1e-18 Score=161.92 Aligned_cols=254 Identities=16% Similarity=0.231 Sum_probs=153.2
Q ss_pred cccChHHHHHHHHHHhhccCCChHH------------------hhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAY------------------FDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~------------------~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.++|++.+++.|...+..+...... ......+..++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4799999999999877432221111 1122345678999999999999999999999999999
Q ss_pred EEeccccc-ccccchH-HHHHHHHHHHH----HHhCCcEEEeccchhhccCCCCCh----hhhhhhHHHHHHHhhccc--
Q psy6716 145 NITSSTLT-SKWYGDS-EKLIRLLFLLA----KELAPSIVFFDEIDSMCSHRSTST----DVTRRMKSELLCQMDGLA-- 212 (371)
Q Consensus 145 ~v~~~~l~-~~~~g~~-~~~~~~~~~~a----~~~~~~il~lDeid~l~~~~~~~~----~~~~~~~~~ll~~l~~~~-- 212 (371)
.++|..+. ..+.|.. ...+...+..+ ....++||||||+|.+...+.... .....+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3344432 23344444322 234589999999999976532221 111237888999998542
Q ss_pred --ccCCC-C--------CCCCEEEEeecCC-----------------------------------------CCCccHHHH
Q psy6716 213 --SVSNE-D--------PNKSVLILAATNF-----------------------------------------PWDLDEAFR 240 (371)
Q Consensus 213 --~~~~~-~--------~~~~v~vI~ttn~-----------------------------------------~~~l~~~l~ 240 (371)
..+.. . ...++++|+++|. ...+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 11100 0 1245677777662 113568889
Q ss_pred hcccceEEecCCCHHHHHHHHHH----HHhcCCCCcchhhhhhcccCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHH
Q psy6716 241 RRLEKRIYVPIPDQATRVSLLTI----FLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLE--GYSSADITIVCRDAAFM 314 (371)
Q Consensus 241 ~rf~~~i~~~~p~~~er~~il~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~ 314 (371)
+||+..+.+++++.++...++.. ++..+.... ........ .++..+..|+.... ....+.+..+++.+...
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLF--KMDEVDLI-FEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH--HTTTCEEE-ECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHH--hhcCceEE-ECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 99988999999999999998862 222110000 00000111 23445777887754 35789999999998888
Q ss_pred HHHHHhhcCCcccccCCCcccccccccHHHHHHHHH
Q psy6716 315 NLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVR 350 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 350 (371)
++.+...... ....|+.+++..+.+
T Consensus 339 ~~~~~~~~~~-----------~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 339 IMFDLPKLKG-----------SEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHTGGGGTT-----------SEEEECHHHHTTSSC
T ss_pred HHhhccCCCC-----------CEEEEeHHHhcCCCC
Confidence 7776543211 123588888765443
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.78 E-value=9.4e-17 Score=149.17 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=151.5
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccch
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGD 158 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~ 158 (371)
.++++++|++.+++.+...+.. ....+.++.+++|+||||+|||++++++|..++.++...+...+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~-------~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEA-------AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHH-------HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHH-------HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 4688899999999888877621 1112344567999999999999999999999998877665543321
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-----cCCC-----CCCCCEEEEee
Q psy6716 159 SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-----VSNE-----DPNKSVLILAA 228 (371)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~-----~~~~~v~vI~t 228 (371)
...+...+. ....+.|+||||++.+.+ .....|+..+..... .+.. .....+.++++
T Consensus 90 -~~~l~~~~~--~~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 90 -QGDMAAILT--SLERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp -HHHHHHHHH--HCCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred -HHHHHHHHH--HccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 111222222 122468999999999832 233444444432210 0000 01134677789
Q ss_pred cCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHH
Q psy6716 229 TNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVC 308 (371)
Q Consensus 229 tn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 308 (371)
++.+..+++++++||...+.+++|+.+++.++++......+.. .++..+..+|.++.| +++.+..++
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~------------~~~~~~~~ia~~~~G-~~R~a~~ll 223 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE------------IEDAAAEMIAKRSRG-TPRIAIRLT 223 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC------------BCHHHHHHHHHTSTT-CHHHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC------------cCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 9999999999999998788999999999999999988765542 334457899999987 788999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 309 RDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 309 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
+.+...+..+. ...|+.+++.+|+....
T Consensus 224 ~~~~~~a~~~~-----------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 224 KRVRDMLTVVK-----------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHHT-----------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-----------------CCCcCHHHHHHHHHHhC
Confidence 88766555432 12578888888887653
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=6.4e-18 Score=158.11 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=136.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC------CCeEEEeccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK------SNFFNITSST 150 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~------~~~~~v~~~~ 150 (371)
...+|++++|++.+++.+...+. . +.+ .++||+||||||||++|+++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK----------S-ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT----------C-TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh----------c-CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34578999999999999988872 1 122 3499999999999999999998854 3578888776
Q ss_pred ccccccchHHHHHHHHHHHHHH----------------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc
Q psy6716 151 LTSKWYGDSEKLIRLLFLLAKE----------------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214 (371)
Q Consensus 151 l~~~~~g~~~~~~~~~~~~a~~----------------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 214 (371)
..+. ..+...+..... ..+.+|+|||+|.+ ....++.|+..++...
T Consensus 100 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l----------~~~~~~~Ll~~le~~~-- 161 (353)
T 1sxj_D 100 ERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM----------TADAQSALRRTMETYS-- 161 (353)
T ss_dssp CCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS----------CHHHHHHHHHHHHHTT--
T ss_pred ccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc----------CHHHHHHHHHHHHhcC--
Confidence 4211 111111111111 13459999999999 4556677888876543
Q ss_pred CCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHH
Q psy6716 215 SNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE 294 (371)
Q Consensus 215 ~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 294 (371)
..+.+|.+||.+..+.+.+++|+. .+.+++|+.++...++...+...+.. .++..++.++.
T Consensus 162 ------~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~------------i~~~~l~~l~~ 222 (353)
T 1sxj_D 162 ------GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVK------------CDDGVLERILD 222 (353)
T ss_dssp ------TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCC------------CCHHHHHHHHH
T ss_pred ------CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCC------------CCHHHHHHHHH
Confidence 356777788999999999999994 79999999999999999988765542 34556888999
Q ss_pred HccCCCHHHHHHHHHHHHHH
Q psy6716 295 RLEGYSSADITIVCRDAAFM 314 (371)
Q Consensus 295 ~~~g~s~~di~~l~~~a~~~ 314 (371)
.+.| +++.+..+++.++..
T Consensus 223 ~~~G-~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 223 ISAG-DLRRGITLLQSASKG 241 (353)
T ss_dssp HTSS-CHHHHHHHHHHTHHH
T ss_pred HcCC-CHHHHHHHHHHHHHh
Confidence 9887 667666666665543
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.78 E-value=4e-17 Score=154.61 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=160.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCc--cEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWK--GVLLVGPPGTGKTMLAKAAATET----KSNFFNITSSTL 151 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~--~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~l 151 (371)
...+++++|.+..++.+...+... .. +..+. .++|+||||||||+++++++..+ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~-------~~-~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNW-------LR-NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHH-------HH-STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHH-------Hc-CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 334578999999999999887221 11 12223 79999999999999999999988 567888987654
Q ss_pred ccc--c--------------cc-hHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc
Q psy6716 152 TSK--W--------------YG-DSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 152 ~~~--~--------------~g-~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 213 (371)
... . .+ ........+...... ..|.+|+|||+|.+ ....+..|+..++....
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS----------CHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc----------chHHHHHHHHHHHhCCC
Confidence 321 0 01 112222222222222 24779999999998 45667777777754431
Q ss_pred cCCCCCCCCEEEEeecCCC---CCccHHHHhcccc-eEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 214 VSNEDPNKSVLILAATNFP---WDLDEAFRRRLEK-RIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 214 ~~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
. ...++.||++||.+ ..+++.+.+||.. .+.+++++.++..+++...+...... ...++..+
T Consensus 155 ~----~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~----------~~~~~~~~ 220 (389)
T 1fnn_A 155 L----GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE----------GSYSEDIL 220 (389)
T ss_dssp H----SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT----------TSSCHHHH
T ss_pred C----CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC----------CCCCHHHH
Confidence 0 01377889999887 6688899999865 79999999999999999888642110 01345567
Q ss_pred HHHHHHc---------cCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHH
Q psy6716 290 EVLAERL---------EGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPED 360 (371)
Q Consensus 290 ~~la~~~---------~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~ 360 (371)
..++..+ .| .++.+..+++.|+..+..+. ...|+.+|+..++.........+.
T Consensus 221 ~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~-----------------~~~i~~~~v~~~~~~~~~~~~~~~ 282 (389)
T 1fnn_A 221 QMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNG-----------------RKHIAPEDVRKSSKEVLFGISEEV 282 (389)
T ss_dssp HHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTT-----------------CSSCCHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHHHHhhhhHHHH
Confidence 8888888 44 78888999988887665532 125778888888877765554444
Q ss_pred HH
Q psy6716 361 AE 362 (371)
Q Consensus 361 ~~ 362 (371)
+.
T Consensus 283 l~ 284 (389)
T 1fnn_A 283 LI 284 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.77 E-value=4.4e-19 Score=162.61 Aligned_cols=202 Identities=20% Similarity=0.233 Sum_probs=132.0
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc---
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY--- 156 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~--- 156 (371)
+++|.+..++.+.+.+ ......+.+|||+||||||||++|+++|..+ +.+|+.++|+.+.....
T Consensus 3 ~iig~s~~~~~~~~~~----------~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEI----------AMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHH----------HHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHH----------HHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 5889999999998887 3333455789999999999999999999976 56899999998754221
Q ss_pred --chH----H---HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEE
Q psy6716 157 --GDS----E---KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVL 224 (371)
Q Consensus 157 --g~~----~---~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~ 224 (371)
|.. . ......|..+. +++||||||+.+ +...+..|+..++.... . +......++.
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI----------SPLMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC----------CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred hcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC----------CHHHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 110 0 01122344443 789999999999 56778889998875431 1 1122345789
Q ss_pred EEeecCCC-------CCccHHHHhcccceEEecCCCHHHHHH----HHHHHHhcCCCCcchhhhhhcccCCCcccHHHHH
Q psy6716 225 ILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLA 293 (371)
Q Consensus 225 vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 293 (371)
||++||.+ ..+.+.+..||. .+.+..|+..+|.+ ++.+++....... ...... .++..+..+.
T Consensus 140 iI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~----~~~~~~-~s~~a~~~L~ 213 (304)
T 1ojl_A 140 LIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERN----RKVVKG-FTPQAMDLLI 213 (304)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHT----TCCCCC-BCHHHHHHHH
T ss_pred EEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHh----ccCccC-CCHHHHHHHH
Confidence 99999986 245677888884 56666666665544 6666554321100 000011 2334466677
Q ss_pred HHccCCCHHHHHHHHHHHHH
Q psy6716 294 ERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 294 ~~~~g~s~~di~~l~~~a~~ 313 (371)
.....-+.+++.++++.+..
T Consensus 214 ~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 214 HYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HCCCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 66644467788888887764
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=9.9e-19 Score=148.63 Aligned_cols=158 Identities=20% Similarity=0.328 Sum_probs=114.3
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEec
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITS 148 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~ 148 (371)
..|++++|.++.++.+.+.+. . ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~----------~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ----------R--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------S--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHh----------c--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 468899999999999988772 1 234679999999999999999999986 678888988
Q ss_pred cccc--ccccchHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 149 STLT--SKWYGDSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 149 ~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
..+. ..+.+.....+..++..+.. ..+.+|+|||+|.+.+..... ....+...+...++ ..++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~l~~~~~----------~~~~~~ 154 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GAMDAGNMLKPALA----------RGELHC 154 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--------CCCCHHHHHHHHH----------TTSCCE
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc--chHHHHHHHHHhhc----------cCCeEE
Confidence 8765 33445555666667665543 346799999999996543211 11223333433332 235678
Q ss_pred EeecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHH
Q psy6716 226 LAATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLL 261 (371)
Q Consensus 226 I~ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il 261 (371)
|++||.+. .+++++.+||. .+.+++|+.+++.+++
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888775 68999999996 6999999999998875
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=3.4e-18 Score=165.86 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=132.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEe
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNIT 147 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~ 147 (371)
...+++++|.+..++.+...+. + ....++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~----------r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLS----------R--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHH----------C--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHh----------c--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3467889999999999988772 2 234679999999999999999999986 67888888
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 148 SSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 148 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
++ ..+.|..+..++.++..+....++||||| . ....++.|+..|. ...+.+|+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~----------~~~a~~~L~~~L~----------~g~v~vI~ 296 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A----------AIDASNILKPSLA----------RGELQCIG 296 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC----C------------------CCCTT----------SSSCEEEE
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C----------chhHHHHHHHhhc----------CCCEEEEe
Confidence 87 55667766778888998888889999999 1 2223444444442 34688999
Q ss_pred ecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCC--
Q psy6716 228 ATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYS-- 300 (371)
Q Consensus 228 ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s-- 300 (371)
+||.+. .+++++.+||. .+.++.|+.+++..|++.++..+..... .. .++..+..++..+.+|.
T Consensus 297 at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~-------~~-i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHR-------VS-ITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSS-------CS-CCHHHHHHHHHHHHHSSCC
T ss_pred cCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcC-------CC-CCHHHHHHHHHHHHHHhcc
Confidence 999886 68999999995 6999999999999999988876432111 11 34455777777665543
Q ss_pred ---HHHHHHHHHHHHHHH
Q psy6716 301 ---SADITIVCRDAAFMN 315 (371)
Q Consensus 301 ---~~di~~l~~~a~~~~ 315 (371)
+.....+++.|....
T Consensus 368 ~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 368 RFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHH
Confidence 557777777766443
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=7.1e-18 Score=173.47 Aligned_cols=221 Identities=20% Similarity=0.234 Sum_probs=153.1
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccccc--------
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK-------- 154 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~-------- 154 (371)
+++|++.+++.+...+..... .......|..++||+||||||||++|+++|..++.+++.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 478999999988887732100 000112344579999999999999999999999999999999987643
Q ss_pred ----ccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC---CCCCCCCEEEEe
Q psy6716 155 ----WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS---NEDPNKSVLILA 227 (371)
Q Consensus 155 ----~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~~~~v~vI~ 227 (371)
++|.... ..+....+...++||||||||.+ ...+++.|+..|+...... ......+++||+
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 3332111 12334445556799999999998 6678999999998543211 111235789999
Q ss_pred ecCCCC-------------------------CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhccc
Q psy6716 228 ATNFPW-------------------------DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVK 282 (371)
Q Consensus 228 ttn~~~-------------------------~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~ 282 (371)
|||... .+++++++||+..+.+++|+.+++..|+..++........ .....+.
T Consensus 604 tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~--~~~~~~~ 681 (758)
T 1r6b_X 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD--QKGVSLE 681 (758)
T ss_dssp EECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH--HTTEEEE
T ss_pred ecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH--HCCcEEE
Confidence 999754 5678999999989999999999999999999875321000 0000111
Q ss_pred CCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy6716 283 VDKDVNIEVLAERL--EGYSSADITIVCRDAAFMNLRRYLN 321 (371)
Q Consensus 283 ~~~~~~~~~la~~~--~g~s~~di~~l~~~a~~~~~~~~~~ 321 (371)
.++..++.++... ..+..+.+..+++.+...++.+.+-
T Consensus 682 -~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 682 -VSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp -ECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred -eCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 2344577777764 2355889999999888877766543
No 60
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.76 E-value=4e-18 Score=153.31 Aligned_cols=206 Identities=17% Similarity=0.166 Sum_probs=122.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccccc
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKW 155 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~ 155 (371)
.+|++++|.+..++.+.+.+ ......+.++||+||||||||++|+++|..+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~----------~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQV----------SHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHH----------HHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHH----------HHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 36888999999999988777 22223346799999999999999999999875 589999999874321
Q ss_pred c-----chHHHHH-------HHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--cCC-CCCC
Q psy6716 156 Y-----GDSEKLI-------RLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--VSN-EDPN 220 (371)
Q Consensus 156 ~-----g~~~~~~-------~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~-~~~~ 220 (371)
. |...... ...+. ...+++|||||++.+ +...+..|+..++.... .+. ....
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATA----------PMMVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHH---HTTTSEEEEESGGGS----------CHHHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhh---hcCCcEEEEechHhc----------CHHHHHHHHHHHHhCCeecCCCccccc
Confidence 1 1100000 01122 224789999999999 55678888888874321 111 1123
Q ss_pred CCEEEEeecCCC-------CCccHHHHhcccceEEecCCCHHHH----HHHHHHHHhcCCCCcchhhhhhcc-cCCCccc
Q psy6716 221 KSVLILAATNFP-------WDLDEAFRRRLEKRIYVPIPDQATR----VSLLTIFLQNVKVDKDVNIEVLNV-KVDKDVN 288 (371)
Q Consensus 221 ~~v~vI~ttn~~-------~~l~~~l~~rf~~~i~~~~p~~~er----~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 288 (371)
.++.||+|||.+ ..+.+.+.+||.. +.+..|+..+| ..++++++....... .. .. ...++..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~----~~-~~~~~~~~~a 213 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREI----KL-PLFPGFTERA 213 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHT----TC-SSCCCBCHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHh----CC-CcccCcCHHH
Confidence 467899999985 2467899999953 55555665544 445555544321100 00 00 0023334
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
+..+.......+.++|..+++.+..
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 5556555433466788888877654
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.76 E-value=2.9e-17 Score=155.36 Aligned_cols=214 Identities=16% Similarity=0.116 Sum_probs=144.8
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----------CCCeEEEeccc
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----------KSNFFNITSST 150 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----------~~~~~~v~~~~ 150 (371)
++++|.+..++.+...+... . .+..+.+++|+||||||||++|+++++.+ +.+++.++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~-------~-~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYF-------V-KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHH-------H-TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHH-------H-cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 67999999999999877221 1 12344689999999999999999999987 88999999876
Q ss_pred cc-ccc-----------------cch-HHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhh-HHHHHHHhhc
Q psy6716 151 LT-SKW-----------------YGD-SEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRM-KSELLCQMDG 210 (371)
Q Consensus 151 l~-~~~-----------------~g~-~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~-~~~ll~~l~~ 210 (371)
.. ... .+. ....+..++...... +.+|+|||+|.+.... .... +..|+...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~------~~~~~l~~l~~~~-- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR------GGDIVLYQLLRSD-- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST------TSHHHHHHHHTSS--
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC------CCceeHHHHhcCC--
Confidence 43 110 011 122233333333332 3399999999994321 0122 22332221
Q ss_pred ccccCCCCCCCCEEEEeecCCC---CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcc
Q psy6716 211 LASVSNEDPNKSVLILAATNFP---WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDV 287 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
.++.||++||.+ ..+++.+.+||...+.+++|+.++..+++...+...... .. .++.
T Consensus 163 ----------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~---------~~-~~~~ 222 (384)
T 2qby_B 163 ----------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK---------GT-YDDE 222 (384)
T ss_dssp ----------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT---------TS-CCSH
T ss_pred ----------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc---------CC-cCHH
Confidence 378899999987 678999999987799999999999999999988631100 01 3344
Q ss_pred cHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 288 NIEVLAERLE---GYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 288 ~~~~la~~~~---g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
.++.+++.+. | +++.+..+++.|+..+. . ...|+.+|+..++...
T Consensus 223 ~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~----~---------------~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 223 ILSYIAAISAKEHG-DARKAVNLLFRAAQLAS----G---------------GGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT----S---------------SSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc----C---------------CCccCHHHHHHHHHHH
Confidence 5778888887 4 56677777777764443 0 1267888888887765
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.76 E-value=1.2e-17 Score=153.98 Aligned_cols=188 Identities=21% Similarity=0.223 Sum_probs=133.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEeccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~ 152 (371)
..+|++++|++.+++.+...+. . +.. .++||+||||||||++|+++++.+ +.+++.+++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVE----------R-KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTT----------T-TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCCHHHHhCCHHHHHHHHHHHh----------C-CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 3468999999999999887762 2 222 349999999999999999999986 3367888887643
Q ss_pred ccccchHHHHHHHHHHHHH--HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC
Q psy6716 153 SKWYGDSEKLIRLLFLLAK--ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~--~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn 230 (371)
+. ......+........ ...+.+|+|||+|.+ ....++.|+..++.. +.++++|++||
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~L~~~le~~--------~~~~~~i~~~~ 140 (319)
T 2chq_A 81 GI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL----------TADAQAALRRTMEMY--------SKSCRFILSCN 140 (319)
T ss_dssp CT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS----------CHHHHHTTGGGTSSS--------SSSEEEEEEES
T ss_pred Ch--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC----------CHHHHHHHHHHHHhc--------CCCCeEEEEeC
Confidence 21 111111111110000 123689999999998 444566666666432 35788899999
Q ss_pred CCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 231 FPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 231 ~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.+..+.+.+.+|+. .+.+++|+.+++..++...+...+.. .++..++.++..+.| +.+.+..+++.
T Consensus 141 ~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~------------i~~~~l~~l~~~~~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 141 YVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVK------------ITEDGLEALIYISGG-DFRKAINALQG 206 (319)
T ss_dssp CGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCC------------BCHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred ChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99999999999994 89999999999999999998876653 344457788877765 56665555554
Q ss_pred H
Q psy6716 311 A 311 (371)
Q Consensus 311 a 311 (371)
+
T Consensus 207 ~ 207 (319)
T 2chq_A 207 A 207 (319)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=7.5e-18 Score=173.28 Aligned_cols=229 Identities=19% Similarity=0.253 Sum_probs=158.7
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEecc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSS 149 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~ 149 (371)
.|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 578899999999998887721 244679999999999999999999876 5567888877
Q ss_pred ccc--ccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 150 TLT--SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 150 ~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
.+. ..+.|..+..++.++..+....+++|||||+|.+.+....... .....+.|...+ . ...+.+|+
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~-~~~~~~~L~~~l----~------~~~~~~I~ 320 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL----S------SGKIRVIG 320 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC-HHHHHHHHSSCS----S------SCCCEEEE
T ss_pred HHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc-hHHHHHHHHHHH----h------CCCeEEEE
Confidence 765 4567888888899998888777899999999999876443211 122222222222 1 34678888
Q ss_pred ecCCC-----CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC----
Q psy6716 228 ATNFP-----WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG---- 298 (371)
Q Consensus 228 ttn~~-----~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g---- 298 (371)
+|+.+ ..+++++.+||. .+.++.|+.+++.++++.+...+... .... ..+..+..++..+.|
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~-------~~v~-~~~~al~~~~~~s~~~i~~ 391 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH-------HDVR-YTAKAVRAAVELAVKYIND 391 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHH-------HTCC-CCHHHHHHHHHHHHHHCTT
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHh-------cCCC-CCHHHHHHHHHHhhhhccc
Confidence 88864 246788999996 79999999999999999887653210 0011 233346666666554
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 299 -YSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 299 -~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
+.+..+..++++|....... ... .....++.+|+..++..+.
T Consensus 392 ~~lp~~~i~lld~a~~~~~~~--~~~-----------~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 392 RHLPDKAIDVIDEAGARARLM--PVS-----------KRKKTVNVADIESVVARIA 434 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHHHS--SSC-----------CCCCSCCHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHHHHHhcc--ccc-----------ccCCccCHHHHHHHHHHhc
Confidence 56678888888876433221 000 0123689999999998753
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=9.8e-17 Score=151.49 Aligned_cols=226 Identities=17% Similarity=0.139 Sum_probs=151.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc------CCCeEEEecccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET------KSNFFNITSSTL 151 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~------~~~~~~v~~~~l 151 (371)
....++++|.+..++.+.+.+.... .+..+..++|+||+|||||++++++++.+ +.+++.++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3445789999999999988772110 02345689999999999999999999987 788999987643
Q ss_pred ccc----------------ccc-hHHHHHHHHHHHHHHhC-CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc
Q psy6716 152 TSK----------------WYG-DSEKLIRLLFLLAKELA-PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 152 ~~~----------------~~g-~~~~~~~~~~~~a~~~~-~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~ 213 (371)
... ..+ ........++....... |.+|+|||++.+..... ...+..++..++...
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~- 160 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN- 160 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC-
Confidence 211 011 12233444444444433 78999999999954321 345666666665431
Q ss_pred cCCCCCCCCEEEEeecCCC---CCccHHHHhccc-ceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccH
Q psy6716 214 VSNEDPNKSVLILAATNFP---WDLDEAFRRRLE-KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNI 289 (371)
Q Consensus 214 ~~~~~~~~~v~vI~ttn~~---~~l~~~l~~rf~-~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
..++.+|++|+.+ ..+++.+.+||. ..+.+++|+.++..+++...+...... . ...+..+
T Consensus 161 ------~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~---------~-~~~~~~~ 224 (386)
T 2qby_A 161 ------KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP---------G-VLPDNVI 224 (386)
T ss_dssp ------C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS---------S-CSCHHHH
T ss_pred ------CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC---------C-CCCHHHH
Confidence 3477888898877 457788888885 389999999999999999877532110 0 0234456
Q ss_pred HHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhC
Q psy6716 290 EVLAERLE---GYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNC 352 (371)
Q Consensus 290 ~~la~~~~---g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 352 (371)
..++..+. | +++.+..+++.|+..+..+. ...|+.+|+..|+...
T Consensus 225 ~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~-----------------~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 225 KLCAALAAREHG-DARRALDLLRVSGEIAERMK-----------------DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTT-----------------CSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcC-----------------CCccCHHHHHHHHHHH
Confidence 77777776 6 67777788888876555421 1256777777666554
No 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=6.1e-18 Score=166.17 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=127.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccC-CChHHhhhcC----CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPS-IIPAYFDKLR----RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~-~~~~~~~~~~----~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
..+|++++|++.+++.|.+++.... ..+..+...+ .+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3478999999999999999884311 0001111111 2457899999999999999999999999999999998865
Q ss_pred ccccchHHH-------HHHHHHHHH-----HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCC
Q psy6716 153 SKWYGDSEK-------LIRLLFLLA-----KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPN 220 (371)
Q Consensus 153 ~~~~g~~~~-------~~~~~~~~a-----~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 220 (371)
........- .+...|..+ ....++||||||+|.+..... ..+..|+..++.. .
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------~~l~~L~~~l~~~--------~ 179 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------GGVGQLAQFCRKT--------S 179 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-------THHHHHHHHHHHC--------S
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-------HHHHHHHHHHHhc--------C
Confidence 432111000 011122222 123578999999999965321 2234555555432 2
Q ss_pred CCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCC
Q psy6716 221 KSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYS 300 (371)
Q Consensus 221 ~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s 300 (371)
..+++++++.....++ .+.+|+ ..+.+++|+.+++.+++...+...++. .++..+..+++.+.| +
T Consensus 180 ~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~------------i~~~~l~~la~~s~G-d 244 (516)
T 1sxj_A 180 TPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFK------------LDPNVIDRLIQTTRG-D 244 (516)
T ss_dssp SCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCC------------CCTTHHHHHHHHTTT-C
T ss_pred CCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-c
Confidence 2344444433333443 355555 689999999999999998888765542 334458889988876 3
Q ss_pred HHHHHHHHH
Q psy6716 301 SADITIVCR 309 (371)
Q Consensus 301 ~~di~~l~~ 309 (371)
.+.+..+++
T Consensus 245 iR~~i~~L~ 253 (516)
T 1sxj_A 245 IRQVINLLS 253 (516)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444333
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.75 E-value=2.6e-17 Score=155.14 Aligned_cols=185 Identities=21% Similarity=0.216 Sum_probs=135.4
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC----------------
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---------------- 142 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---------------- 142 (371)
..|++++|++.+++.+...+. . +..++.+||+||+|||||++|+++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~----------~-~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLS----------L-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHH----------H-TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHH----------h-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 468899999999999998872 2 2334578999999999999999999987542
Q ss_pred --------eEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhc
Q psy6716 143 --------FFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDG 210 (371)
Q Consensus 143 --------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~ 210 (371)
++.++...- ... ..++.++..+.. ..+.+|+|||+|.+ ....++.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~Ll~~le~ 145 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLEE 145 (373)
T ss_dssp HHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGS----------CHHHHHHHHHHHHS
T ss_pred HhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchh----------cHHHHHHHHHHHhc
Confidence 233332210 001 113334443332 23579999999998 44566778877754
Q ss_pred ccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHH
Q psy6716 211 LASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIE 290 (371)
Q Consensus 211 ~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
. +.++++|++|+.+..+.+.+.+|+ ..+.+++|+.++...++..++...+.. .++..+.
T Consensus 146 ~--------~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~------------~~~~a~~ 204 (373)
T 1jr3_A 146 P--------PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIA------------HEPRALQ 204 (373)
T ss_dssp C--------CSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCC------------BCHHHHH
T ss_pred C--------CCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCC------------CCHHHHH
Confidence 2 447788888988888999999998 789999999999999999988765542 2344577
Q ss_pred HHHHHccCCCHHHHHHHHHHHH
Q psy6716 291 VLAERLEGYSSADITIVCRDAA 312 (371)
Q Consensus 291 ~la~~~~g~s~~di~~l~~~a~ 312 (371)
.++..+.| +++++..+++.+.
T Consensus 205 ~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 205 LLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHSSS-CHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHH
Confidence 88999877 8888888887764
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=6e-17 Score=149.43 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=134.3
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEeccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~ 152 (371)
...|++++|++..++.+...+. . +..+ +++|+||+|+|||++|+++++.+ +.+++.+++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~----------~-~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAK----------D-GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHH----------S-CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHH----------c-CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 3468899999999999998872 2 2232 39999999999999999999986 3457788776532
Q ss_pred ccccchHHHHHHHHHHHHH-------HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 153 SKWYGDSEKLIRLLFLLAK-------ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~-------~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
+ ...++..+.... ...+.+|+|||+|.+ ....++.|+..++.. +.++.+
T Consensus 85 ~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l----------~~~~~~~L~~~le~~--------~~~~~~ 140 (323)
T 1sxj_B 85 G------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM----------TAGAQQALRRTMELY--------SNSTRF 140 (323)
T ss_dssp S------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS----------CHHHHHTTHHHHHHT--------TTTEEE
T ss_pred C------hHHHHHHHHHHHhccccCCCCCceEEEEECcccC----------CHHHHHHHHHHHhcc--------CCCceE
Confidence 1 222333333333 123679999999998 334456666666543 346788
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|++||.+..+.+.+.+|+. .+.+++|+.++...++...+...+.. .++..+..++..+.| +++.+.
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~G-~~r~a~ 206 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVK------------YTNDGLEAIIFTAEG-DMRQAI 206 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCC------------BCHHHHHHHHHHHTT-CHHHHH
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC-CHHHHH
Confidence 8888999999999999994 89999999999999999988765542 234457788888876 666666
Q ss_pred HHHHHHH
Q psy6716 306 IVCRDAA 312 (371)
Q Consensus 306 ~l~~~a~ 312 (371)
.+++.+.
T Consensus 207 ~~l~~~~ 213 (323)
T 1sxj_B 207 NNLQSTV 213 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.75 E-value=3.6e-18 Score=139.29 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=94.9
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDS 159 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~ 159 (371)
+++|.+..++.+.+.+ ........+|||+||||||||++|+++|..+ +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~----------~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRL----------QQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHH----------HHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHH----------HHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5789999999998887 3334455679999999999999999999987 67899 999987654
Q ss_pred HHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-------
Q psy6716 160 EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP------- 232 (371)
Q Consensus 160 ~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~------- 232 (371)
......+..+ .+++|||||||.+ +...+..|+..|... ..++.+|+|||.+
T Consensus 66 -~~~~~~~~~a---~~g~l~ldei~~l----------~~~~q~~Ll~~l~~~--------~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSHPEHL----------TREQQYHLVQLQSQE--------HRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEECGGGS----------CHHHHHHHHHHHHSS--------SCSSCEEEEESSCHHHHHHH
T ss_pred -hhhhcHHHHc---CCcEEEEcChHHC----------CHHHHHHHHHHHhhc--------CCCEEEEEECCcCHHHHHHc
Confidence 1223344444 4799999999999 567788888888332 3467889999975
Q ss_pred CCccHHHHhccc-ceEEecC
Q psy6716 233 WDLDEAFRRRLE-KRIYVPI 251 (371)
Q Consensus 233 ~~l~~~l~~rf~-~~i~~~~ 251 (371)
..+.+.+..|+. ..+.+|+
T Consensus 124 ~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHHHHEEECCC
T ss_pred CCCCHHHHHHhcCCEEeCCC
Confidence 245667777763 2344443
No 69
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.74 E-value=1.3e-18 Score=164.69 Aligned_cols=218 Identities=21% Similarity=0.240 Sum_probs=146.2
Q ss_pred CCCCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHH
Q psy6716 16 HHLPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLY 95 (371)
Q Consensus 16 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~ 95 (371)
++.....++++. .++.+|+.||++...+...++++++..........+.... . . .+..++|.+..++.+.
T Consensus 81 ~~~~~~~~~a~~-~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~~~~~l~~~~-----~--~--~~~~~ig~s~~m~~l~ 150 (387)
T 1ny5_A 81 HGTIKTAVEAMK-MGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREK-----D--L--KEEEYVFESPKMKEIL 150 (387)
T ss_dssp TTCHHHHHHHHT-TTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--T--TCCCCCCCSHHHHHHH
T ss_pred CCCHHHHHHHHh-cCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----h--h--cchhhhhccHHhhHHH
Confidence 345666778887 7789999999998888888887776432222111111111 0 1 1456888888888888
Q ss_pred HHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecccccccc-----cchHH-------
Q psy6716 96 EAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLTSKW-----YGDSE------- 160 (371)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~~~~-----~g~~~------- 160 (371)
+.+ ........+|+|+|++||||+++|++++..+. .+|+.++|+.+.... +|...
T Consensus 151 ~~i----------~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~ 220 (387)
T 1ny5_A 151 EKI----------KKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAV 220 (387)
T ss_dssp HHH----------HHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCC
T ss_pred HHH----------HHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcc
Confidence 877 34445557799999999999999999998875 589999999875432 11100
Q ss_pred HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc--c-CCCCCCCCEEEEeecCCC-----
Q psy6716 161 KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS--V-SNEDPNKSVLILAATNFP----- 232 (371)
Q Consensus 161 ~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-~~~~~~~~v~vI~ttn~~----- 232 (371)
......|..|. +++||||||+.| +...|..|++.|+.... . +......+++||++||..
T Consensus 221 ~~~~g~~~~a~---~gtlfldei~~l----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~ 287 (387)
T 1ny5_A 221 SSKEGFFELAD---GGTLFLDEIGEL----------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELV 287 (387)
T ss_dssp SCBCCHHHHTT---TSEEEEESGGGC----------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHH
T ss_pred cccCCceeeCC---CcEEEEcChhhC----------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHH
Confidence 00123344444 799999999999 78889999999885321 1 222334588999999974
Q ss_pred --CCccHHHHhcccceEEecCCCHHHHHH----HHHHHHhc
Q psy6716 233 --WDLDEAFRRRLEKRIYVPIPDQATRVS----LLTIFLQN 267 (371)
Q Consensus 233 --~~l~~~l~~rf~~~i~~~~p~~~er~~----il~~~~~~ 267 (371)
..+.+.+..|+ ..+.+..|+..+|.+ ++.+++..
T Consensus 288 ~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~ 327 (387)
T 1ny5_A 288 KEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKK 327 (387)
T ss_dssp HTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred HcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHH
Confidence 33455666677 456677787776654 44555443
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1e-16 Score=148.17 Aligned_cols=186 Identities=22% Similarity=0.261 Sum_probs=134.8
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcC-----CCeEEEecccc
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETK-----SNFFNITSSTL 151 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~-----~~~~~v~~~~l 151 (371)
...+|++++|++.+++.+...+. . +.. .++||+||||||||++|+++++.+. ..++.+++++.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVK----------T-GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHH----------H-TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHH----------c-CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34468899999999999998872 2 122 3599999999999999999999863 24777777653
Q ss_pred cccccchHHHHHHHHHHH-HHH-----hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 152 TSKWYGDSEKLIRLLFLL-AKE-----LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~-a~~-----~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
.+. ..++..+.. +.. ..+.+|+|||+|.+ ....++.|+..++.. +.++++
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~L~~~le~~--------~~~~~~ 143 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL----------TQDAQQALRRTMEMF--------SSNVRF 143 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS----------CHHHHHHHHHHHHHT--------TTTEEE
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC----------CHHHHHHHHHHHHhc--------CCCCeE
Confidence 211 111111111 111 24679999999999 445677788777643 346788
Q ss_pred EeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHH
Q psy6716 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADIT 305 (371)
Q Consensus 226 I~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~ 305 (371)
|++||.+..+.+.+.+|+. .+.+++|+.++...++...+...+.. .++..++.++..+.| +++.+.
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~~g-~~r~~~ 209 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLE------------LTEEGLQAILYIAEG-DMRRAI 209 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCE------------ECHHHHHHHHHHHTT-CHHHHH
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHCCC-CHHHHH
Confidence 8899999999999999995 78999999999999999988766542 234457788888876 677666
Q ss_pred HHHHHHH
Q psy6716 306 IVCRDAA 312 (371)
Q Consensus 306 ~l~~~a~ 312 (371)
.+++.++
T Consensus 210 ~~l~~~~ 216 (327)
T 1iqp_A 210 NILQAAA 216 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=4.5e-17 Score=169.19 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=153.6
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc----
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK---- 154 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~---- 154 (371)
.+++|++.+++.+...+..... .......|..++||+||||||||++|+++|..+ +.+++.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence 4689999999999888732100 000112344589999999999999999999998 679999999987643
Q ss_pred -ccchHHHH-----HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC---CCCCCCEEE
Q psy6716 155 -WYGDSEKL-----IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN---EDPNKSVLI 225 (371)
Q Consensus 155 -~~g~~~~~-----~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~~~~~~v~v 225 (371)
++|..... ...+....+...++|||||||+.+ +..+++.|+..|+....... .....+++|
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ii 704 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVI 704 (854)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGS----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEE
T ss_pred HHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc----------CHHHHHHHHHHhccCceECCCCCEeccCCeEE
Confidence 12111100 112333344455789999999998 67889999999985442211 112347889
Q ss_pred EeecCCC--------------------------CCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhh
Q psy6716 226 LAATNFP--------------------------WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVL 279 (371)
Q Consensus 226 I~ttn~~--------------------------~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~ 279 (371)
|+|||.. ..+.+.++.||+..+.+++|+.+++..|+..++......... ...
T Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~--~~~ 782 (854)
T 1qvr_A 705 ILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE--KRI 782 (854)
T ss_dssp EEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT--TTC
T ss_pred EEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh--CCc
Confidence 9999972 346788889998888888899999999999988743211000 000
Q ss_pred cccCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 280 NVKVDKDVNIEVLAERLE--GYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 280 ~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
... .++..++.|+.... .++.++|..+++.+...++.+.+-.
T Consensus 783 ~~~-~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 826 (854)
T 1qvr_A 783 SLE-LTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 826 (854)
T ss_dssp EEE-ECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHH
T ss_pred eEE-ECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 111 33445778888766 5688999999999988888776543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=3.6e-17 Score=168.05 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=133.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEe
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNIT 147 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~ 147 (371)
...+++++|.++.++.+...+. . ....++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~----------~--~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLS----------R--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHH----------C--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHh----------C--CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3467889999999999998872 2 334679999999999999999999986 77888887
Q ss_pred cccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEe
Q psy6716 148 SSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILA 227 (371)
Q Consensus 148 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ 227 (371)
+ ...+.|+.+..++.+|..+....++||||| . ....++.|+..++ ...+.+|+
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~----------~~~~~~~L~~~l~----------~~~v~~I~ 296 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----A----------AIDASNILKPSLA----------RGELQCIG 296 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC----C------------------CCCTT----------SSSCEEEE
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc----C----------chhHHHHHHHHHh----------cCCEEEEe
Confidence 7 445677777788899999998889999999 1 2233444544442 34688999
Q ss_pred ecCCCC-----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc-----c
Q psy6716 228 ATNFPW-----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL-----E 297 (371)
Q Consensus 228 ttn~~~-----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~ 297 (371)
+||... .+++++++|| ..+.++.|+.+++..|++.+...+..... .. ..+..+..++..+ .
T Consensus 297 at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~-------~~-i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHR-------VS-ITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSS-------CS-CCHHHHHHHHHHHHHSSCC
T ss_pred CCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcC-------CC-CCHHHHHHHHHHhhccccc
Confidence 999887 6899999999 56999999999999999988766432111 11 2344456666554 3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy6716 298 GYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 298 g~s~~di~~l~~~a~~~~~ 316 (371)
++.+.....++..|...+.
T Consensus 368 ~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp SCTTHHHHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHHH
Confidence 5667777778877765443
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.72 E-value=3.1e-18 Score=139.30 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=93.3
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHH
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKL 162 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 162 (371)
+++|.++.++.+.+.+. .......+|||+||||||||++|+++|..+. +++.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~----------~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVE----------AAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHH----------HHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHH----------HHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999998872 2223446799999999999999999999888 99999998865433
Q ss_pred HHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-CC----ccH
Q psy6716 163 IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-WD----LDE 237 (371)
Q Consensus 163 ~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-~~----l~~ 237 (371)
....+..+. +++|||||+|.+ ....+..|+..++... ..++++|+|||.+ .. +.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l----------~~~~q~~Ll~~l~~~~-------~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQY----------SRNIQTGITFIIGKAE-------RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTC----------CHHHHHHHHHHHHHHT-------TTTCEEEEEEEECTTTC--CHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHC----------CHHHHHHHHHHHHhCC-------CCCEEEEEecCCCHHHHHhCccH
Confidence 334444443 789999999999 5567778888876542 3467888888865 33 445
Q ss_pred HHHhcccc-eEEecC
Q psy6716 238 AFRRRLEK-RIYVPI 251 (371)
Q Consensus 238 ~l~~rf~~-~i~~~~ 251 (371)
.+..|+.. .+.+|+
T Consensus 127 ~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 127 KLAGLFSESVVRIPP 141 (143)
T ss_dssp HHHHHSSSEEEEECC
T ss_pred HHHHHhcCcEEeCCC
Confidence 66667632 344443
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=3.5e-17 Score=138.46 Aligned_cols=150 Identities=21% Similarity=0.345 Sum_probs=108.7
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEecc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSS 149 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~ 149 (371)
.|++++|.+..++.+.+.+. . ....+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------~--~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS----------R--RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------S--SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred ccchhhcchHHHHHHHHHHh----------C--CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 67889999999998888772 1 234679999999999999999999986 6788888887
Q ss_pred cccc--cccchHHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 150 TLTS--KWYGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 150 ~l~~--~~~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
.+.. .+.+.....+..++..+... .+.+|+|||+|.+.+.+.... ....+...|...++ ..++++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~----------~~~~~ii 156 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLA----------RGELRCI 156 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHH----------TTCSCEE
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHh----------cCCeeEE
Confidence 6642 23455555666677766655 567999999999975433111 11234444444442 2356788
Q ss_pred eecCCCC-----CccHHHHhcccceEEecCCC
Q psy6716 227 AATNFPW-----DLDEAFRRRLEKRIYVPIPD 253 (371)
Q Consensus 227 ~ttn~~~-----~l~~~l~~rf~~~i~~~~p~ 253 (371)
+++|.+. .+++++++||. .+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 8888764 68999999996 58998885
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=4.7e-17 Score=169.06 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=132.6
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEec
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITS 148 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~ 148 (371)
..+++++|.+..+..+.+.+. . ...++++|+||||||||++|+++|..+ +.+++.+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~----------~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL----------R--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH----------C--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCcccCCcHHHHHHHHHHHh----------c--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 367889999999998888762 1 234679999999999999999999987 778999999
Q ss_pred cccc--ccccchHHHHHHHHHHHHHHh-CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEE
Q psy6716 149 STLT--SKWYGDSEKLIRLLFLLAKEL-APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225 (371)
Q Consensus 149 ~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~v 225 (371)
+.+. ..+.|+....+..++..+... .++||||||+|.+.+.....+ .....+.|...+. ...+.+
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~----------~~~i~~ 302 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALA----------RGELRL 302 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHH----------TTCCCE
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHh----------CCCeEE
Confidence 8876 456778888888899888765 578999999999976533221 1223333444442 235678
Q ss_pred EeecCCCC----CccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc-----
Q psy6716 226 LAATNFPW----DLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL----- 296 (371)
Q Consensus 226 I~ttn~~~----~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----- 296 (371)
|++||.++ .+++++.+||.. +.++.|+.+++..|++.++..+.... ... ..+..+..++..+
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~-------~~~-i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHH-------GVR-ISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHT-------TCE-ECHHHHHHHHHHHHHHCC
T ss_pred EEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhc-------CCC-CCHHHHHHHHHHHhhhcc
Confidence 88888764 468999999965 99999999999999998876442100 001 2333455666654
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy6716 297 EGYSSADITIVCRDAAFMNL 316 (371)
Q Consensus 297 ~g~s~~di~~l~~~a~~~~~ 316 (371)
..|.+.....++.+|.....
T Consensus 374 ~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp SSCTHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHH
Confidence 34667777777777655443
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-16 Score=144.95 Aligned_cols=213 Identities=9% Similarity=0.091 Sum_probs=136.6
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc----------CCCeEEEecccccc
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET----------KSNFFNITSSTLTS 153 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~----------~~~~~~v~~~~l~~ 153 (371)
+.|.++....|...+.-. - .+..+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~-------i-~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS-------L-MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH-------H-HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566777777777666211 0 12455789999999999999999999987 34688899876543
Q ss_pred c----------c------cchHHHHHHHHHHHH--HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccC
Q psy6716 154 K----------W------YGDSEKLIRLLFLLA--KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215 (371)
Q Consensus 154 ~----------~------~g~~~~~~~~~~~~a--~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 215 (371)
. + .+.....+...|... ....+.|++|||+|.+. ...++..|+.....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------~q~~L~~l~~~~~~----- 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------SEKILQYFEKWISS----- 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------CTHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------cchHHHHHHhcccc-----
Confidence 2 1 122345566666654 23457899999999995 12334444443211
Q ss_pred CCCCCCCEEEEeecCCCCCc----cHHHHhccc-ceEEecCCCHHHHHHHHHHHHhcCCCCc--chhhhhh---------
Q psy6716 216 NEDPNKSVLILAATNFPWDL----DEAFRRRLE-KRIYVPIPDQATRVSLLTIFLQNVKVDK--DVNIEVL--------- 279 (371)
Q Consensus 216 ~~~~~~~v~vI~ttn~~~~l----~~~l~~rf~-~~i~~~~p~~~er~~il~~~~~~~~~~~--~~~~~~~--------- 279 (371)
...++.||+++|..+.. ++.+.+||. ..+.|++++.++..+|++..+....-.. .......
T Consensus 160 ---~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 160 ---KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp ---SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred ---cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 24578999999988643 345567886 5799999999999999999987642100 0000000
Q ss_pred ------------cccCCCcccHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy6716 280 ------------NVKVDKDVNIEVLAER---LEGYSSADITIVCRDAAFMNLRRYLNQ 322 (371)
Q Consensus 280 ------------~~~~~~~~~~~~la~~---~~g~s~~di~~l~~~a~~~~~~~~~~~ 322 (371)
.....++..++.+|+. ..| ..+..-.+|+.|...+-++....
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 0001244457777774 344 55666677888888887776543
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.71 E-value=3.8e-17 Score=158.45 Aligned_cols=210 Identities=18% Similarity=0.080 Sum_probs=126.8
Q ss_pred cccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEeccc-----ccccc
Q psy6716 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSST-----LTSKW 155 (371)
Q Consensus 83 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~-----l~~~~ 155 (371)
.++|++.+++.+...+ ....++||+||||||||++|+++|..++. +|..+++.. +.+.+
T Consensus 23 ~ivGq~~~i~~l~~al--------------~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHH--------------HHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHH--------------hcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 4899999998887766 12357999999999999999999998854 555555532 22211
Q ss_pred cchHHHHHHHHHHHHHHh---CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc-CC-C-CCCCCEEEEeec
Q psy6716 156 YGDSEKLIRLLFLLAKEL---APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV-SN-E-DPNKSVLILAAT 229 (371)
Q Consensus 156 ~g~~~~~~~~~~~~a~~~---~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~-~-~~~~~v~vI~tt 229 (371)
.+.... ....+..+... .++|||||||+.+ +...++.|+..|+..... .+ . ..+.+ ++|++|
T Consensus 89 ~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~AT 156 (500)
T 3nbx_X 89 SIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAAS 156 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGC----------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEE
T ss_pred cHHHHh-hchhHHhhhccCCCcceeeeHHhHhhh----------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcc
Confidence 111110 01112111111 3568999999987 677889999998743211 11 1 12233 457777
Q ss_pred CCCCC---ccHHHHhcccceEEecCCCH-HHHHHHHHHHHhcCCCCcch------------hhhhhcccCCCcccHHHHH
Q psy6716 230 NFPWD---LDEAFRRRLEKRIYVPIPDQ-ATRVSLLTIFLQNVKVDKDV------------NIEVLNVKVDKDVNIEVLA 293 (371)
Q Consensus 230 n~~~~---l~~~l~~rf~~~i~~~~p~~-~er~~il~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~la 293 (371)
|.... +.+++++||...+.++.|+. +++..|+............. ........ .++...+.++
T Consensus 157 N~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~-v~d~v~e~i~ 235 (500)
T 3nbx_X 157 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEIT-LPDHVFELIF 235 (500)
T ss_dssp SSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCB-CCHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCccc-CchHHHHHHH
Confidence 75422 45699999988899999987 77888887654321110000 00001111 2233355555
Q ss_pred HHc---------cCCCHHHHHHHHHHHHHHHHHHH
Q psy6716 294 ERL---------EGYSSADITIVCRDAAFMNLRRY 319 (371)
Q Consensus 294 ~~~---------~g~s~~di~~l~~~a~~~~~~~~ 319 (371)
... .|.|++.+..+++.|...|..+.
T Consensus 236 ~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 236 MLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 544 47899999999988876666544
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.4e-16 Score=147.54 Aligned_cols=189 Identities=17% Similarity=0.220 Sum_probs=130.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC----------------
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS---------------- 141 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~---------------- 141 (371)
..+|++++|++.+++.+...+ ...+..+. ++|+||+|+|||++++++++.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~----------~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLS----------DQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTT----------TCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHhcCCHHHHHHHHHHH----------hhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 346899999999999888765 11223334 999999999999999999996421
Q ss_pred -------------CeEEEecccccccccchHHHHHHHHHHHHH--------------HhCCcEEEeccchhhccCCCCCh
Q psy6716 142 -------------NFFNITSSTLTSKWYGDSEKLIRLLFLLAK--------------ELAPSIVFFDEIDSMCSHRSTST 194 (371)
Q Consensus 142 -------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~--------------~~~~~il~lDeid~l~~~~~~~~ 194 (371)
+++.++++.... .. ...++..+..+. ...+.+|+|||++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-------- 146 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMGN---ND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-------- 146 (354)
T ss_dssp -------CCEECSSEEEECCC-------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSS--------
T ss_pred ccccceeeeecccceEEecHhhcCC---cc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc--------
Confidence 122222221100 00 012233333221 124669999999997
Q ss_pred hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcch
Q psy6716 195 DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDV 274 (371)
Q Consensus 195 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~ 274 (371)
....++.|+..++... .++.+|.+|+.+..+.+.+++|+ ..+.+++|+.++...+++..+...+..
T Consensus 147 --~~~~~~~L~~~le~~~--------~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 212 (354)
T 1sxj_E 147 --TKDAQAALRRTMEKYS--------KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ--- 212 (354)
T ss_dssp --CHHHHHHHHHHHHHST--------TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE---
T ss_pred --CHHHHHHHHHHHHhhc--------CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC---
Confidence 4556677777776542 35788888999999999999999 789999999999999999998766542
Q ss_pred hhhhhcccCCC-cccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 275 NIEVLNVKVDK-DVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 275 ~~~~~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
.+ +..+..++..+.| +.+++..+++.+..
T Consensus 213 ---------~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 213 ---------LETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp ---------ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred ---------CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 23 4567889988876 77777777765543
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.70 E-value=9.2e-18 Score=157.72 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=142.3
Q ss_pred CCCCchhhhccCCcchhHHHhhhcCCCchHHHHHHHHHhcCCChHHHHHHHHHHhhhhccCCCCCcccccChHHHHHHHH
Q psy6716 16 HHLPGSLINNLTPSTPLLNIIQLNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLLY 95 (371)
Q Consensus 16 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~ 95 (371)
++.....++++. .++.+|+.||++.+.+...+++++......... .....++|.+..+..+.
T Consensus 81 ~~~~~~~~~a~~-~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~~~-----------------~~~~~~ig~s~~~~~~~ 142 (368)
T 3dzd_A 81 HGSVDTAVKAIK-KGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPP-----------------QEEIEFVGEHPKILEIK 142 (368)
T ss_dssp SSCCHHHHHHHH-HTCCEEEESSCCHHHHHHHHHHHHHHHSCCCCC-----------------CCCCCCCCCSHHHHHHH
T ss_pred CCCHHHHHHHHh-cCcceEEeCCCCHHHHHHHHHHHHHHhhhhhcc-----------------cccccccccchHHHHHH
Confidence 344666777777 678899999999888888888777654332211 01235788888888887
Q ss_pred HHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC--eEEEeccccccccc-----chHH-------H
Q psy6716 96 EAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN--FFNITSSTLTSKWY-----GDSE-------K 161 (371)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~--~~~v~~~~l~~~~~-----g~~~-------~ 161 (371)
..+ ........+++++|++||||+.+|+++|..++.. |+.++|+.+..... |... .
T Consensus 143 ~~~----------~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~ 212 (368)
T 3dzd_A 143 RLI----------PKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT 212 (368)
T ss_dssp HHH----------HHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC
T ss_pred hhh----------hhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc
Confidence 776 2333344669999999999999999999988653 99999998764322 1100 0
Q ss_pred HHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc---CCCCCCCCEEEEeecCCC------
Q psy6716 162 LIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV---SNEDPNKSVLILAATNFP------ 232 (371)
Q Consensus 162 ~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~v~vI~ttn~~------ 232 (371)
.....|..| .+++||||||+.| +...|..|+..|+..... ++.....++++|++||..
T Consensus 213 ~~~g~~~~a---~~gtlfldei~~l----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~ 279 (368)
T 3dzd_A 213 RKKGKLELA---DQGTLFLDEVGEL----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK 279 (368)
T ss_dssp CEECHHHHT---TTSEEEEETGGGS----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH
T ss_pred ccCChHhhc---CCCeEEecChhhC----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 011234444 3789999999999 788999999999854321 112234578999999974
Q ss_pred -CCccHHHHhcccceEEecCCCHHHHH----HHHHHHHhc
Q psy6716 233 -WDLDEAFRRRLEKRIYVPIPDQATRV----SLLTIFLQN 267 (371)
Q Consensus 233 -~~l~~~l~~rf~~~i~~~~p~~~er~----~il~~~~~~ 267 (371)
..+.+.+..|+ ..+.+..|+..+|. .++.+++.+
T Consensus 280 ~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 280 KGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp TTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred cCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 23445677777 45666677776654 445555543
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.7e-17 Score=165.07 Aligned_cols=239 Identities=16% Similarity=0.153 Sum_probs=147.3
Q ss_pred ccccChHHHHHHHHHHhhccCCChHHhhh-cCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE----eccccccccc
Q psy6716 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDK-LRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI----TSSTLTSKWY 156 (371)
Q Consensus 82 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v----~~~~l~~~~~ 156 (371)
..++|++.+++.+...+.- ..+..... ......++||+||||||||++|+++|+.++..++.. ++.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3589999998877543311 10000000 002224799999999999999999999987765442 2233322211
Q ss_pred chHH----HHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc----C-CCCCCCCEEEEe
Q psy6716 157 GDSE----KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV----S-NEDPNKSVLILA 227 (371)
Q Consensus 157 g~~~----~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~-~~~~~~~v~vI~ 227 (371)
.... ......+..| .++||||||||.+ ....+..|+..|+..... + ....+.++.||+
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 1100 0001122233 3799999999999 556788888888743321 1 112346789999
Q ss_pred ecCCCC-------------CccHHHHhcccceE-EecCCCHHHHHHHHHHHHhcCCCC-------cch-h-----hhhhc
Q psy6716 228 ATNFPW-------------DLDEAFRRRLEKRI-YVPIPDQATRVSLLTIFLQNVKVD-------KDV-N-----IEVLN 280 (371)
Q Consensus 228 ttn~~~-------------~l~~~l~~rf~~~i-~~~~p~~~er~~il~~~~~~~~~~-------~~~-~-----~~~~~ 280 (371)
|||++. .+++++++||+..+ ..+.|+.+ ...|.++.+...... .+. . .....
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~ 518 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYV 518 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHH
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhC
Confidence 999886 88999999997544 45667766 888888877643310 000 0 00000
Q ss_pred ccCCCcccHHHHHHH--------------ccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHH
Q psy6716 281 VKVDKDVNIEVLAER--------------LEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFD 346 (371)
Q Consensus 281 ~~~~~~~~~~~la~~--------------~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 346 (371)
....++...+.+... ..+.|++.+..+++.|...|..+. ...++.+|+.
T Consensus 519 ~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-----------------~~~V~~~dv~ 581 (595)
T 3f9v_A 519 TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL-----------------KAEVTREDAE 581 (595)
T ss_dssp CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS-----------------SCCSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC-----------------cCCCCHHHHH
Confidence 112333345556655 457889999999998876665543 2379999999
Q ss_pred HHHHhCC
Q psy6716 347 EAVRNCP 353 (371)
Q Consensus 347 ~al~~~~ 353 (371)
+|++-+.
T Consensus 582 ~Ai~l~~ 588 (595)
T 3f9v_A 582 RAINIMR 588 (595)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=3.4e-15 Score=139.06 Aligned_cols=172 Identities=19% Similarity=0.202 Sum_probs=123.0
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCC-----CeEEEeccccc
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKS-----NFFNITSSTLT 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~-----~~~~v~~~~l~ 152 (371)
...|++++|++.+++.|...+ .. +..+ +++|+||||||||++|+++++.+.. .+..+++++..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i----------~~-g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFV----------DE-GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHH----------HT-TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCcHHHhcCcHHHHHHHHHHH----------hc-CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 447889999999999998887 22 2222 3999999999999999999998633 36666665421
Q ss_pred ccccchHHHHHHHHHHHHHH------hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEE
Q psy6716 153 SKWYGDSEKLIRLLFLLAKE------LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLIL 226 (371)
Q Consensus 153 ~~~~g~~~~~~~~~~~~a~~------~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI 226 (371)
+ ...++........ ..+.+++|||+|.+ ....++.|+..++... ..+.+|
T Consensus 89 ~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l----------~~~~~~~L~~~le~~~--------~~~~~i 144 (340)
T 1sxj_C 89 G------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM----------TNAAQNALRRVIERYT--------KNTRFC 144 (340)
T ss_dssp S------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS----------CHHHHHHHHHHHHHTT--------TTEEEE
T ss_pred c------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC----------CHHHHHHHHHHHhcCC--------CCeEEE
Confidence 1 1222222222221 12579999999998 4455777888776543 356778
Q ss_pred eecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccC
Q psy6716 227 AATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEG 298 (371)
Q Consensus 227 ~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g 298 (371)
.+||.+..+.+.+.+|+ ..+.+++++.++..+.+...+...++. .++..+..++..+.|
T Consensus 145 l~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~------------i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLK------------LSPNAEKALIELSNG 203 (340)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCC------------BCHHHHHHHHHHHTT
T ss_pred EEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCC------------CCHHHHHHHHHHcCC
Confidence 88999999999999999 478999999999999999888654432 234456677777765
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.60 E-value=5.2e-15 Score=147.96 Aligned_cols=239 Identities=22% Similarity=0.283 Sum_probs=144.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCe---EEEeccccc--
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF---FNITSSTLT-- 152 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~---~~v~~~~l~-- 152 (371)
...|++++|++.+++.+...+ ....+++|+||||||||++|+++|..+.... +.+.+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i--------------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~ 102 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAA--------------NQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN 102 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHH--------------HTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT
T ss_pred ccccceEECchhhHhhccccc--------------cCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc
Confidence 446788999999999888877 2235799999999999999999999875421 222111100
Q ss_pred cccc-----chHHH-------------------------------------------------HHHHHH-----------
Q psy6716 153 SKWY-----GDSEK-------------------------------------------------LIRLLF----------- 167 (371)
Q Consensus 153 ~~~~-----g~~~~-------------------------------------------------~~~~~~----------- 167 (371)
.... +.... ....+|
T Consensus 103 ~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 103 MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG 182 (604)
T ss_dssp SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence 0000 00000 000011
Q ss_pred ------------HHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhccccc--C-----------CCCCCCC
Q psy6716 168 ------------LLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV--S-----------NEDPNKS 222 (371)
Q Consensus 168 ------------~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~-----------~~~~~~~ 222 (371)
.......+++|||||++.+ ....+..|+..|+..... + ....+.+
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~ 252 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATL----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCD 252 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGS----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECC
T ss_pred CccccccccccCceeeecCCCEEEEechhhC----------CHHHHHHHHHHHHcCcEEecccccccccccCCCCcccee
Confidence 0112234789999999998 567788888888743211 1 1223457
Q ss_pred EEEEeecCCC--CCccHHHHhccc---ceEEecC--C-CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHH
Q psy6716 223 VLILAATNFP--WDLDEAFRRRLE---KRIYVPI--P-DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAE 294 (371)
Q Consensus 223 v~vI~ttn~~--~~l~~~l~~rf~---~~i~~~~--p-~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 294 (371)
+.||++||+. ..+++++++||. ..+.++. + ..+....+++.+.+..... ..... .++..+..+.+
T Consensus 253 ~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~-ls~eAl~~Li~ 325 (604)
T 3k1j_A 253 FVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD------GKIPH-FTKEAVEEIVR 325 (604)
T ss_dssp CEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH------CSSCC-BBHHHHHHHHH
T ss_pred EEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc------cCccc-CCHHHHHHHHH
Confidence 8899999986 578999999995 3444432 2 3455666665554432100 00001 23334555655
Q ss_pred Hc---cCC------CHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCCCCCCHHHHHHHH
Q psy6716 295 RL---EGY------SSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRPEDAEKFT 365 (371)
Q Consensus 295 ~~---~g~------s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 365 (371)
.. .|. +.+++..+++.|...+..+. ...|+.+|+.+|++.. ..+.....+.|.
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~-----------------~~~I~~edv~~A~~~~-~~i~~~~~e~~l 387 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG-----------------KKYVEREDVIEAVKMA-KPLEKQLADWYI 387 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHT-CCHHHHHHHHHH
T ss_pred HHhhhhccccccccCHHHHHHHHHHHHHHHHhcC-----------------cccccHHHHHHHHHhh-hhhHHHHHHHHh
Confidence 43 453 78999999998876554432 2379999999999763 334444444443
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.57 E-value=2.9e-14 Score=132.32 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=120.4
Q ss_pred cChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCC----------------------
Q psy6716 85 AGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN---------------------- 142 (371)
Q Consensus 85 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~---------------------- 142 (371)
..+.+..+.+...+ . .+..++.+||+||+|+|||++|+++|+.+...
T Consensus 5 pw~~~~~~~l~~~i----------~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 5 PWLRPDFEKLVASY----------Q-AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGGHHHHHHHHHHH----------H-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHH----------H-cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34567777777766 2 23445679999999999999999999987542
Q ss_pred --eEEEecccccccccchHHHHHHHHHHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC
Q psy6716 143 --FFNITSSTLTSKWYGDSEKLIRLLFLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN 216 (371)
Q Consensus 143 --~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 216 (371)
++.+++..- +. ......++.+...+... ...|++|||+|.| ....++.|+..++.
T Consensus 74 ~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l----------~~~a~naLLk~lEe------ 134 (334)
T 1a5t_A 74 PDYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL----------TDAAANALLKTLEE------ 134 (334)
T ss_dssp TTEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB----------CHHHHHHHHHHHTS------
T ss_pred CCEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhc----------CHHHHHHHHHHhcC------
Confidence 233332200 00 01123345555554432 2579999999999 45667888888854
Q ss_pred CCCCCCEEEEeecCCCCCccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHc
Q psy6716 217 EDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL 296 (371)
Q Consensus 217 ~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 296 (371)
++.++++|.+|+.++.+.+.+++|+ ..+.+++|+.++...++.... . .++..+..++..+
T Consensus 135 --p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~--------------~~~~~~~~l~~~s 194 (334)
T 1a5t_A 135 --PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T--------------MSQDALLAALRLS 194 (334)
T ss_dssp --CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C--------------CCHHHHHHHHHHT
T ss_pred --CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C--------------CCHHHHHHHHHHc
Confidence 3457888889999999999999999 579999999999999887765 2 2344567788887
Q ss_pred cCCCHHHHHHHHH
Q psy6716 297 EGYSSADITIVCR 309 (371)
Q Consensus 297 ~g~s~~di~~l~~ 309 (371)
.| +++.+..+++
T Consensus 195 ~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 195 AG-SPGAALALFQ 206 (334)
T ss_dssp TT-CHHHHHHTTS
T ss_pred CC-CHHHHHHHhc
Confidence 76 6665555443
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=5.5e-13 Score=127.05 Aligned_cols=212 Identities=15% Similarity=0.082 Sum_probs=131.6
Q ss_pred CcccccChHHHHHHHHHHh-hccCCChHHhhhcCCCCccEEE--EcCCCchHHHHHHHHHHHc---------CCCeEEEe
Q psy6716 80 KWADIAGLDDAKDLLYEAI-VLPSIIPAYFDKLRRPWKGVLL--VGPPGTGKTMLAKAAATET---------KSNFFNIT 147 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~vLl--~Gp~GtGKt~la~~la~~~---------~~~~~~v~ 147 (371)
..+.++|.+..++.|...+ .... ......+..++| +||+|+|||++++.+++.. +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLL------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHH------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHh------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3467999999888888766 3210 110123467999 9999999999999999875 45678888
Q ss_pred ccccccc------c----------cch-HHHHHHHHHHHHH-HhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 148 SSTLTSK------W----------YGD-SEKLIRLLFLLAK-ELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 148 ~~~l~~~------~----------~g~-~~~~~~~~~~~a~-~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
|...... . .+. .......+..... ...+.+|+|||+|.+...... ....+..++..+.
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~----~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI----AAEDLYTLLRVHE 169 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS----CHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc----chHHHHHHHHHHH
Confidence 7432110 0 010 1122222222222 234789999999999542111 1234444555544
Q ss_pred cccccCCCCCC--CCEEEEeecCCCC---Ccc---HHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcc
Q psy6716 210 GLASVSNEDPN--KSVLILAATNFPW---DLD---EAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNV 281 (371)
Q Consensus 210 ~~~~~~~~~~~--~~v~vI~ttn~~~---~l~---~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~ 281 (371)
.... .. .++.+|++++.++ .++ +.+.+++...+.+++++.++..+++...+......
T Consensus 170 ~~~~-----~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~---------- 234 (412)
T 1w5s_A 170 EIPS-----RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD---------- 234 (412)
T ss_dssp HSCC-----TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT----------
T ss_pred hccc-----CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC----------
Confidence 3221 12 4788888887654 233 56667776669999999999999998876532210
Q ss_pred cCCCcccHHHHHHHcc------CCCHHHHHHHHHHHHHHHHH
Q psy6716 282 KVDKDVNIEVLAERLE------GYSSADITIVCRDAAFMNLR 317 (371)
Q Consensus 282 ~~~~~~~~~~la~~~~------g~s~~di~~l~~~a~~~~~~ 317 (371)
...++..+..++..+. | .++.+..++..|+..+..
T Consensus 235 ~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 235 TVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp TSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 0023445778888888 7 788888888877655543
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=3.8e-13 Score=122.79 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=105.0
Q ss_pred ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc------CCCeEEEecccccccccchH
Q psy6716 86 GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET------KSNFFNITSSTLTSKWYGDS 159 (371)
Q Consensus 86 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~------~~~~~~v~~~~l~~~~~g~~ 159 (371)
|++++.+.|...+ +.. . .+.+||+||||+|||++|+++++.+ ...++.+++++- . ..
T Consensus 1 g~~~~~~~L~~~i----------~~~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~--~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRII----------EKS-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---N--IG 63 (305)
T ss_dssp ---CHHHHHHHHH----------HTC-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---C--BC
T ss_pred ChHHHHHHHHHHH----------HCC-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---C--CC
Confidence 5677788888877 222 2 4689999999999999999999863 346777775421 1 12
Q ss_pred HHHHHHHHHHHHHhC----CcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCc
Q psy6716 160 EKLIRLLFLLAKELA----PSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235 (371)
Q Consensus 160 ~~~~~~~~~~a~~~~----~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l 235 (371)
...++.+...+...+ ..|++|||+|.| ....++.|+..|+.. +.++++|.+|+.+..+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~l----------t~~a~naLLk~LEep--------~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERM----------TQQAANAFLKALEEP--------PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGB----------CHHHHHHTHHHHHSC--------CTTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHh----------CHHHHHHHHHHHhCC--------CCCeEEEEEECChHhC
Confidence 233556666665432 359999999999 556688899888643 4577888888889999
Q ss_pred cHHHHhcccceEEecCCCHHHHHHHHHHHH
Q psy6716 236 DEAFRRRLEKRIYVPIPDQATRVSLLTIFL 265 (371)
Q Consensus 236 ~~~l~~rf~~~i~~~~p~~~er~~il~~~~ 265 (371)
.+++++| .+.+++|+.++....+...+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999998888776
No 86
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.41 E-value=4.5e-13 Score=98.68 Aligned_cols=86 Identities=17% Similarity=0.360 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCC
Q psy6716 253 DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIP 332 (371)
Q Consensus 253 ~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 332 (371)
|.++|.+||+.++++.++ .++++++.||+.|+||||+||..+|++|+..++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~-------------~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-------------ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-------------CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-------------
T ss_pred CHHHHHHHHHHHHCCCCC-------------CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-------------
Confidence 567899999999998876 678899999999999999999999999999999984
Q ss_pred cccccccccHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q psy6716 333 DKELDKAIVQADFDEAVRNCPKTVR-PEDAEKFTDWI 368 (371)
Q Consensus 333 ~~~~~~~i~~~d~~~al~~~~~~~~-~~~~~~~~~~~ 368 (371)
...|+.+||..|++++.++.. .+....|.+|+
T Consensus 56 ----~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 56 ----RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp ----CSSBCHHHHHHHHHHHTC---------------
T ss_pred ----cccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 237999999999999988874 45688898895
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.37 E-value=4.5e-12 Score=119.78 Aligned_cols=222 Identities=18% Similarity=0.122 Sum_probs=129.5
Q ss_pred ccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHH-HHHcCCCeEEEec-c---cccccccch
Q psy6716 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAA-ATETKSNFFNITS-S---TLTSKWYGD 158 (371)
Q Consensus 84 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~l-a~~~~~~~~~v~~-~---~l~~~~~g~ 158 (371)
|.|++.+|..|.-.+.-... . .....+|||.|+||| ||++|+++ +..+.+..+.... + .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 89999998888766621100 0 011237999999999 99999999 8776554332111 1 111110000
Q ss_pred H-HHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccc-cCCCCCCCCEEEEeecCCCC---
Q psy6716 159 S-EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLAS-VSNEDPNKSVLILAATNFPW--- 233 (371)
Q Consensus 159 ~-~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~v~vI~ttn~~~--- 233 (371)
. .......+..|. .+++|||||+.+ +...+..|+..|+...- ..+..-+.++.||||+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd 353 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGA----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWP 353 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTC----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--C
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhC----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccC
Confidence 0 000011233333 789999999999 77889999999884321 11113456889999999864
Q ss_pred --------CccHHHHhcccceEEe-cCCCHHHH---------HHHHHHHHhcCC---CCcchhhhhhcccCCCcccHHHH
Q psy6716 234 --------DLDEAFRRRLEKRIYV-PIPDQATR---------VSLLTIFLQNVK---VDKDVNIEVLNVKVDKDVNIEVL 292 (371)
Q Consensus 234 --------~l~~~l~~rf~~~i~~-~~p~~~er---------~~il~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 292 (371)
.|++++++||+..+.+ ..|+.++- .+.++.|..... .... .++...+.+
T Consensus 354 ~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~----------ls~ea~~yI 423 (506)
T 3f8t_A 354 SDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPE----------LTEEARKRL 423 (506)
T ss_dssp CSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCE----------ECHHHHHHH
T ss_pred CCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCce----------eCHHHHHHH
Confidence 7899999999765543 44543321 112222221110 0000 111111111
Q ss_pred HH-----------------HccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcccccccccHHHHHHHHHhCC
Q psy6716 293 AE-----------------RLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCP 353 (371)
Q Consensus 293 a~-----------------~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 353 (371)
.. ..-|.|++.+..+++.|...|..+. ...++.+|+..|++-+.
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g-----------------R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL-----------------SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC-----------------cCCCCHHHHHHHHHHHH
Confidence 10 2347899999999998887777765 34799999999998764
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=1.2e-12 Score=141.26 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=106.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCC----------hHHhhh-----------------cCCCCcc--EEEEcCCCch
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSII----------PAYFDK-----------------LRRPWKG--VLLVGPPGTG 127 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~----------~~~~~~-----------------~~~~~~~--vLl~Gp~GtG 127 (371)
+...|.+++|++++++.+.+.+.+|+.+ ++.++. .+-+|++ +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4478999999999999999999998733 334443 1223455 9999999999
Q ss_pred HHHHHHHHHHHc---CCCeEEEeccccc------------ccccch----HHHHHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 128 KTMLAKAAATET---KSNFFNITSSTLT------------SKWYGD----SEKLIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 128 Kt~la~~la~~~---~~~~~~v~~~~l~------------~~~~g~----~~~~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
||++|++++.+. +.+.+.|+..... .+|+++ .++.++.++..|+...|++||+|+++.|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998865 5677777777644 455666 789999999999999999999999999998
Q ss_pred CCC-----C--ChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC
Q psy6716 189 HRS-----T--STDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232 (371)
Q Consensus 189 ~~~-----~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~ 232 (371)
.+. . ......+.+++++..|++... ..+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~------~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK------QSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH------HTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhc------cCCeEEE-Eeccc
Confidence 732 1 114456678899999987654 3466666 66665
No 89
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=95.48 Aligned_cols=78 Identities=26% Similarity=0.465 Sum_probs=69.6
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCccc
Q psy6716 248 YVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVA 327 (371)
Q Consensus 248 ~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~ 327 (371)
+-.+|+.++|.+||+.++++..+ ..+++++.||+.|+||||+||..+|++|+..++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l-------------~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL-------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE-------------CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC-------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--------
Confidence 34689999999999999998776 578899999999999999999999999999999875
Q ss_pred ccCCCcccccccccHHHHHHHHHhCCCC
Q psy6716 328 MKDIPDKELDKAIVQADFDEAVRNCPKT 355 (371)
Q Consensus 328 ~~~~~~~~~~~~i~~~d~~~al~~~~~~ 355 (371)
...|+.+||..|++++.|.
T Consensus 66 ---------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ---------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ---------CSEECHHHHHHHHHHHHCC
T ss_pred ---------CCCCCHHHHHHHHHHHccC
Confidence 2479999999999998764
No 90
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=93.34 Aligned_cols=75 Identities=28% Similarity=0.531 Sum_probs=67.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q psy6716 250 PIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMK 329 (371)
Q Consensus 250 ~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~ 329 (371)
|+|+.++|.+||+.++++..+ ..+++++.||..|+||||+||..+|++|+..++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-------------~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~---------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT----------
T ss_pred CcCCHHHHHHHHHHHhcCCCC-------------CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----------
Confidence 689999999999999998776 578899999999999999999999999999999874
Q ss_pred CCCcccccccccHHHHHHHHHhCCC
Q psy6716 330 DIPDKELDKAIVQADFDEAVRNCPK 354 (371)
Q Consensus 330 ~~~~~~~~~~i~~~d~~~al~~~~~ 354 (371)
...|+.+||..|++++..
T Consensus 58 -------~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 -------RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp -------CSEECHHHHHHHHHHHHC
T ss_pred -------CCCCCHHHHHHHHHHHHh
Confidence 237999999999998743
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.35 E-value=9.5e-13 Score=96.05 Aligned_cols=82 Identities=18% Similarity=0.418 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCC
Q psy6716 253 DQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIP 332 (371)
Q Consensus 253 ~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 332 (371)
+.++|.+||+.++++.++ .++++++.+|+.|+||||+||..+|++|+..++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~-------------~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNL-------------SEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCB-------------CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-------------
T ss_pred CHHHHHHHHHHHhCCCCC-------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------
Confidence 678999999999998776 568899999999999999999999999998888764
Q ss_pred cccccccccHHHHHHHHHhCCCCCCHHHHHHHH
Q psy6716 333 DKELDKAIVQADFDEAVRNCPKTVRPEDAEKFT 365 (371)
Q Consensus 333 ~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 365 (371)
...|+.+||..|+++++|+++ ++++.|+
T Consensus 56 ----~~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 56 ----RYIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp ----CSSBCHHHHHHHHHHHCC-----------
T ss_pred ----cCCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 237999999999999999998 7777663
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=4.8e-11 Score=100.36 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCcccccC----hHHHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEec
Q psy6716 78 NVKWADIAG----LDDAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITS 148 (371)
Q Consensus 78 ~~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~ 148 (371)
..+|+++++ +..+.+.+.+++ .... ..+.+++|+||+|||||+++++++..+ +..++.+++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFV----------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHH----------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHH----------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 346777765 445555555555 2221 224679999999999999999999876 556777777
Q ss_pred ccccccccchHHHH-HHHHHHHHHHhCCcEEEeccchhh
Q psy6716 149 STLTSKWYGDSEKL-IRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 149 ~~l~~~~~g~~~~~-~~~~~~~a~~~~~~il~lDeid~l 186 (371)
.++...+....... ...... ....+.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 66543322111000 001111 2235889999999854
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.18 E-value=1.3e-09 Score=101.01 Aligned_cols=193 Identities=22% Similarity=0.209 Sum_probs=114.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc----
Q psy6716 77 TNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT---- 152 (371)
Q Consensus 77 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~---- 152 (371)
+......++|.+...+.|.+.+. . ...++|+||+|+|||++++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~----------~----~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLE----------N----YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHH----------H----CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHh----------c----CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 44455679999999999988772 1 15799999999999999999998875 6667665431
Q ss_pred --c--c-------cc-------------------------chHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChhh
Q psy6716 153 --S--K-------WY-------------------------GDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDV 196 (371)
Q Consensus 153 --~--~-------~~-------------------------g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~~ 196 (371)
. . .. .........+...+....|.+|+|||++.+.......
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~--- 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRG--- 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccc---
Confidence 0 0 00 0111122222222332348999999999984310000
Q ss_pred hhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCcc---------HHHHhcccceEEecCCCHHHHHHHHHHHHhc
Q psy6716 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD---------EAFRRRLEKRIYVPIPDQATRVSLLTIFLQN 267 (371)
Q Consensus 197 ~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~---------~~l~~rf~~~i~~~~p~~~er~~il~~~~~~ 267 (371)
...+...|...++.. .++.+|.|+.....+. ..+..|+...+.+++.+.++..+++...+..
T Consensus 148 ~~~~~~~L~~~~~~~---------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 148 GKELLALFAYAYDSL---------PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp THHHHHHHHHHHHHC---------TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhc---------CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 112233332223221 2455665554321111 1122355457899999999999999887765
Q ss_pred CCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 268 VKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.+.. .++..+..+...+.| .|.-+..++..
T Consensus 219 ~~~~------------~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 219 VNLD------------VPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp TTCC------------CCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred cCCC------------CCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 4431 233456677788877 56666666543
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=1e-10 Score=131.68 Aligned_cols=145 Identities=22% Similarity=0.332 Sum_probs=92.5
Q ss_pred CccEEEEcCCCchHHHHHH-HHHHHcCCCeEEEecccccccccchHHHHHHHHHHHH-H--------------HhCCcEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAK-AAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLA-K--------------ELAPSIV 178 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~-~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a-~--------------~~~~~il 178 (371)
.+++||+||||||||++|+ +++...+.+++.++++...+. ..+...+... . ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 3689999999999999994 455555677888887765431 1122222221 0 0113599
Q ss_pred EeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCC--CCCCCCEEEEeecCCCC-----CccHHHHhcccceEEecC
Q psy6716 179 FFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSN--EDPNKSVLILAATNFPW-----DLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 179 ~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~~~~~v~vI~ttn~~~-----~l~~~l~~rf~~~i~~~~ 251 (371)
||||++....++.+.. ...+++.+++.. .+...... .....++.+|||||++. .++++++||| .++.++.
T Consensus 1341 FiDEinmp~~d~yg~q-~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~ 1417 (2695)
T 4akg_A 1341 FCDEINLPKLDKYGSQ-NVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGY 1417 (2695)
T ss_dssp EEETTTCSCCCSSSCC-HHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCC
T ss_pred EecccccccccccCch-hHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCC
Confidence 9999986543332221 122333333221 11111100 01124689999999994 7999999999 8899999
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy6716 252 PDQATRVSLLTIFLQNV 268 (371)
Q Consensus 252 p~~~er~~il~~~~~~~ 268 (371)
|+.+++..|+..++...
T Consensus 1418 P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999888643
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.16 E-value=6.7e-11 Score=96.30 Aligned_cols=107 Identities=15% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~ 190 (371)
+...++|+||+|+|||+++++++... +..+++++..++... +....+.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh--
Confidence 34679999999999999999999876 667888887776543 0123478999999988632
Q ss_pred CCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecC-CCCCcc--HHHHhcccceEEecC
Q psy6716 191 STSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN-FPWDLD--EAFRRRLEKRIYVPI 251 (371)
Q Consensus 191 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn-~~~~l~--~~l~~rf~~~i~~~~ 251 (371)
..+..|+..++..... ...++|.||| .|..+. +.+.+|+.....+..
T Consensus 98 --------~~~~~l~~li~~~~~~------g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 98 --------EEQALLFSIFNRFRNS------GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp --------HHHHHHHHHHHHHHHH------TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred --------HHHHHHHHHHHHHHHc------CCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 1144455555443321 1222444555 454332 889999876665543
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.13 E-value=2.9e-09 Score=98.88 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=114.3
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc---
Q psy6716 76 ETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT--- 152 (371)
Q Consensus 76 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~--- 152 (371)
.+......++|.+...+.|.+ + .. ..++|+||+|+|||++++.+++..+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l----------~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-L----------RA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-T----------CS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-h----------cC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344456679999999998887 6 11 4799999999999999999999887777888776430
Q ss_pred --c--cccch---------------------------------------HHHHHHHHHHHHHHh--CCcEEEeccchhhc
Q psy6716 153 --S--KWYGD---------------------------------------SEKLIRLLFLLAKEL--APSIVFFDEIDSMC 187 (371)
Q Consensus 153 --~--~~~g~---------------------------------------~~~~~~~~~~~a~~~--~~~il~lDeid~l~ 187 (371)
. ..... ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 00000 001123334333332 37899999999985
Q ss_pred cCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCcc---------HHHHhcccceEEecCCCHHHHH
Q psy6716 188 SHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD---------EAFRRRLEKRIYVPIPDQATRV 258 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~---------~~l~~rf~~~i~~~~p~~~er~ 258 (371)
... ...+...|-..++.. .++.+|.+++....+. ..+..|+...+.+++.+.++..
T Consensus 151 ~~~------~~~~~~~l~~~~~~~---------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR------GVNLLPALAYAYDNL---------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT------TCCCHHHHHHHHHHC---------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred ccC------chhHHHHHHHHHHcC---------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 411 112222222222211 1456666665421111 1123355567899999999999
Q ss_pred HHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 259 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
+++...+...+.. .+ +...+...+.| .|.-+..++..
T Consensus 216 ~~l~~~~~~~~~~-------------~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADID-------------FK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCC-------------CC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-------------CC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 9998877543331 11 23777888877 56666666554
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.13 E-value=1.7e-11 Score=89.01 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCCCcc
Q psy6716 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIPDK 334 (371)
Q Consensus 255 ~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 334 (371)
++|.+||+.++++.++ .++++++.+|..|+||||+||..+|++|+..++++.
T Consensus 1 ~~R~~Il~~~l~~~~~-------------~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-------------APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------- 52 (82)
T ss_dssp -------------CEE-------------CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT---------------
T ss_pred CHHHHHHHHHHcCCCC-------------CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---------------
Confidence 4688999999987765 567899999999999999999999999999999874
Q ss_pred cccccccHHHHHHHHHhC-CCCCCHHHHHHH
Q psy6716 335 ELDKAIVQADFDEAVRNC-PKTVRPEDAEKF 364 (371)
Q Consensus 335 ~~~~~i~~~d~~~al~~~-~~~~~~~~~~~~ 364 (371)
...|+.+||..|++++ .++.+.++++.|
T Consensus 53 --~~~i~~~df~~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 53 --RYVILQSDLEEAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp --CSEECHHHHHHHHHTTCC-----------
T ss_pred --cCCcCHHHHHHHHHHHHcCcCChHHHHhh
Confidence 2379999999999998 466777777666
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.03 E-value=7.9e-10 Score=94.60 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=59.5
Q ss_pred CCCcccccChHH----HHHHHHHHhhccCCChHHhhhcCC--CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 78 NVKWADIAGLDD----AKDLLYEAIVLPSIIPAYFDKLRR--PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 78 ~~~~~~i~G~~~----~~~~l~~~i~~~~~~~~~~~~~~~--~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
..+|+++++.+. +++.+..++ ..... .+.+++|+||||||||++|++++..+ +.+++.+++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFV----------AEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHH----------HHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHH----------HHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 457888876543 334444444 22111 22689999999999999999999987 567888888
Q ss_pred ccccccccchHH-HHHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 149 STLTSKWYGDSE-KLIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 149 ~~l~~~~~g~~~-~~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
..+...+..... ......+.... .+.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 765433221100 00112222222 2569999999765
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.94 E-value=1.1e-09 Score=93.39 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH--------cC-CCeEEEeccccccccc----------chHHH--HHHHHHHHH--HH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE--------TK-SNFFNITSSTLTSKWY----------GDSEK--LIRLLFLLA--KE 172 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~--------~~-~~~~~v~~~~l~~~~~----------g~~~~--~~~~~~~~a--~~ 172 (371)
.-.|++|+||||||++|...+.. .| ++++..++.++..... ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35789999999999999886433 34 6777777665542221 00000 001122221 22
Q ss_pred hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecCC
Q psy6716 173 LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIP 252 (371)
Q Consensus 173 ~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~p 252 (371)
..+++|+|||++.+.+.+....+.. .++..+.... ....-||.+++.+..++..+++|+...++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~-----rll~~l~~~r-------~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP-----ENVQWLNTHR-------HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC-----HHHHGGGGTT-------TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhH-----HHHHHHHhcC-------cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 3478999999999976543221111 2444443221 234566778888999999999999988998776
Q ss_pred CHH
Q psy6716 253 DQA 255 (371)
Q Consensus 253 ~~~ 255 (371)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=5.5e-08 Score=109.83 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=91.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
.++++.||+|||||.+++++|+.+|.+++.++|++-... ..+..+|.-+.+. ++++++||++.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 579999999999999999999999999999999875431 2234445444433 689999999998
Q ss_pred hhhhhHHHH-------HHHhhcc----cccCC-CCCCCCEEEEeecCCC----CCccHHHHhcccceEEecCCCHHHHHH
Q psy6716 196 VTRRMKSEL-------LCQMDGL----ASVSN-EDPNKSVLILAATNFP----WDLDEAFRRRLEKRIYVPIPDQATRVS 259 (371)
Q Consensus 196 ~~~~~~~~l-------l~~l~~~----~~~~~-~~~~~~v~vI~ttn~~----~~l~~~l~~rf~~~i~~~~p~~~er~~ 259 (371)
...+++.+ ...+... ...+. ..-..+..|++|.|+. ..|++++++|| ..+.+..|+.+...+
T Consensus 710 -~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 710 -DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHH
Confidence 23333333 2222111 11111 1234567788899843 57999999999 679999999998888
Q ss_pred HHHH
Q psy6716 260 LLTI 263 (371)
Q Consensus 260 il~~ 263 (371)
|+..
T Consensus 788 i~l~ 791 (2695)
T 4akg_A 788 MILQ 791 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.87 E-value=3.2e-09 Score=97.01 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCcccccChH----HHHHHHHHHhhccCCChHHhhhcC-CCCccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEecc
Q psy6716 79 VKWADIAGLD----DAKDLLYEAIVLPSIIPAYFDKLR-RPWKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSS 149 (371)
Q Consensus 79 ~~~~~i~G~~----~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~ 149 (371)
.+|+++.+.. .+...+.+++ .... .+..+++|+||||||||++|+++|..+. .+++.++++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFV----------EQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHH----------HHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHH----------HhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 5788887533 2333444444 2211 1247899999999999999999998654 678888877
Q ss_pred cccccccchH-HHHHHHHHHHHHHhCCcEEEeccchhh
Q psy6716 150 TLTSKWYGDS-EKLIRLLFLLAKELAPSIVFFDEIDSM 186 (371)
Q Consensus 150 ~l~~~~~g~~-~~~~~~~~~~a~~~~~~il~lDeid~l 186 (371)
++...+.... .......+... ....+|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 6654322110 00111112222 23579999999655
No 102
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=3.3e-09 Score=96.06 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEec--ccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITS--STLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS 193 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~--~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~ 193 (371)
..++|+||||+|||++|.+++...+.++.+++. .+....+....+..+..+........ +|+||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 457999999999999999999875555333443 22222222344555555555555443 99999999996543321
Q ss_pred h--hhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccH
Q psy6716 194 T--DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237 (371)
Q Consensus 194 ~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~ 237 (371)
. ....+...+++..|.++.. ..++.+|+++|. ...++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k------~~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAA------SRGCVVIASLNP-TSNDD 240 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHH------HHTCEEEEECCC-SSCSS
T ss_pred cccchHHHHHHHHHHHHHHHHh------hCCCEEEEEeCC-cccch
Confidence 0 1112334455555543332 124577888884 34443
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.82 E-value=1.8e-08 Score=85.13 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=63.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
+++||+||||||||++|.++++.+...++.+..+. ..+. +. ......+++|||++.-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~--~l~~~kIiiLDEad~~~-------- 116 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LE--PLTDTKVAMLDDATTTC-------- 116 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GG--GGTTCSSEEEEEECHHH--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hc--ccCCCCEEEEECCCchh--------
Confidence 57999999999999999999999865443221110 0000 00 01124599999997431
Q ss_pred hhhhhHHHHHHHhhcccccCCCCC-----CCCEEEEeecCCC---CCccHHHHhcccceEEecC
Q psy6716 196 VTRRMKSELLCQMDGLASVSNEDP-----NKSVLILAATNFP---WDLDEAFRRRLEKRIYVPI 251 (371)
Q Consensus 196 ~~~~~~~~ll~~l~~~~~~~~~~~-----~~~v~vI~ttn~~---~~l~~~l~~rf~~~i~~~~ 251 (371)
...+...+...+++....-+... .....+|.|||.. +..-+.+.+|+ ..+.++.
T Consensus 117 -~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~ 178 (212)
T 1tue_A 117 -WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPN 178 (212)
T ss_dssp -HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCS
T ss_pred -HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCC
Confidence 12223345555665421100001 1234667789874 23336788898 5666663
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.68 E-value=2.2e-07 Score=86.16 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=102.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CC-CeEEEecccccccccchHHHHHHHHHHHHHH----hCCcEEEeccchh
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KS-NFFNITSSTLTSKWYGDSEKLIRLLFLLAKE----LAPSIVFFDEIDS 185 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~-~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~il~lDeid~ 185 (371)
..+.+||+||+|.||+..++.+++.+ +. ++..+... +. ..++.+...+.. ...-|++|||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN------TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT------CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC------CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34679999999999999999998864 22 22222111 10 112333333332 2356999999998
Q ss_pred -hccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC------CCccHHHHhcccceEEecCCCHHHHH
Q psy6716 186 -MCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP------WDLDEAFRRRLEKRIYVPIPDQATRV 258 (371)
Q Consensus 186 -l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~------~~l~~~l~~rf~~~i~~~~p~~~er~ 258 (371)
+ ....++.|+..++.. +.++++|.+++.+ ..+.+.+.+|+ ..+.+.+|+.++..
T Consensus 88 kl----------~~~~~~aLl~~le~p--------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GP----------NAAINEQLLTLTGLL--------HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CC----------CTTHHHHHHHHHTTC--------BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHH
T ss_pred CC----------ChHHHHHHHHHHhcC--------CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHH
Confidence 7 345567788777543 3345555555443 34667888888 67899999999999
Q ss_pred HHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy6716 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311 (371)
Q Consensus 259 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a 311 (371)
..++..+...++. .++..++.++..+.| +.+++.+.++..
T Consensus 149 ~~l~~~~~~~g~~------------i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 149 RWVAARAKQLNLE------------LDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp HHHHHHHHHTTCE------------ECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC------------CCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 9999998877753 334457778877765 555555555543
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.65 E-value=1.1e-07 Score=83.96 Aligned_cols=123 Identities=12% Similarity=0.194 Sum_probs=68.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCCh
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST 194 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~ 194 (371)
.++++|+||||||||++|++||+.+.. +-.++.+. ..+ .+.. .....+++.||....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~-------- 160 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT-------- 160 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE--------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch--------
Confidence 467999999999999999999997544 22223221 010 0111 112345566665433
Q ss_pred hhhhhhHHHHHHHhhcccccCCCC-----CCCCEEEEeecCCC-----------CCccHHHHhcccceEEec--------
Q psy6716 195 DVTRRMKSELLCQMDGLASVSNED-----PNKSVLILAATNFP-----------WDLDEAFRRRLEKRIYVP-------- 250 (371)
Q Consensus 195 ~~~~~~~~~ll~~l~~~~~~~~~~-----~~~~v~vI~ttn~~-----------~~l~~~l~~rf~~~i~~~-------- 250 (371)
...+..+-..+++....-+.. .-....+|.|||.. +...+.|.+|+ ..+.++
T Consensus 161 ---~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~ 236 (267)
T 1u0j_A 161 ---AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFG 236 (267)
T ss_dssp ---TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSC
T ss_pred ---hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccC
Confidence 222333333444221111111 12455677788862 13457899988 667776
Q ss_pred CCCHHHHHHHHHHH
Q psy6716 251 IPDQATRVSLLTIF 264 (371)
Q Consensus 251 ~p~~~er~~il~~~ 264 (371)
+.+.++-...+...
T Consensus 237 ~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 237 KVTKQEVKDFFRWA 250 (267)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56778888888744
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.57 E-value=9.9e-08 Score=108.50 Aligned_cols=141 Identities=22% Similarity=0.279 Sum_probs=87.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHH-HcCCCeEEEecccccccccchHHHHHHHHHHHH---HH-------hC------CcEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT-ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLA---KE-------LA------PSIV 178 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~-~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a---~~-------~~------~~il 178 (371)
++|||+||||||||+++..... ..+.+++.++++.-.+. ..+...+... +. .. ..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 5699999999999987765444 44667788888764421 1122222210 00 01 2499
Q ss_pred EeccchhhccCCCCChhhhhhhHHHHHHHhhcc--cccCC--CCCCCCEEEEeecCCC-----CCccHHHHhcccceEEe
Q psy6716 179 FFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGL--ASVSN--EDPNKSVLILAATNFP-----WDLDEAFRRRLEKRIYV 249 (371)
Q Consensus 179 ~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~--~~~~~~v~vI~ttn~~-----~~l~~~l~~rf~~~i~~ 249 (371)
||||++.-..+..+. ...+.-|...++.. ....+ ...-.++.+|||+|+| ..+++.+.||| .++.+
T Consensus 1379 FiDDiNmp~~D~yGt----Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYGT----QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTCCCCCTTSC----CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCCCCcccccc----ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 999998643322221 12233333334321 11100 0123578899999988 35899999999 67999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q psy6716 250 PIPDQATRVSLLTIFLQN 267 (371)
Q Consensus 250 ~~p~~~er~~il~~~~~~ 267 (371)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877654
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.53 E-value=5e-07 Score=102.87 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=89.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhccCCCCChh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~~~~~~~ 195 (371)
.+..+.||+|||||.+++.+|+.+|++++.++|++-..- ..+..+|.-+.+ .++..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcC---------
Confidence 456899999999999999999999999999999875431 122333433333 3789999999998
Q ss_pred hhhhhHHHHHHHhh-----------ccccc-CC-CCCCCCEEEEeecCCC----CCccHHHHhcccceEEecCCCHHHHH
Q psy6716 196 VTRRMKSELLCQMD-----------GLASV-SN-EDPNKSVLILAATNFP----WDLDEAFRRRLEKRIYVPIPDQATRV 258 (371)
Q Consensus 196 ~~~~~~~~ll~~l~-----------~~~~~-~~-~~~~~~v~vI~ttn~~----~~l~~~l~~rf~~~i~~~~p~~~er~ 258 (371)
...+++.+...+. .+... +. ..-+..+.|++|.|+- ..|++.+.+|| ..+.+..||.+...
T Consensus 669 -~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 669 -EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHH
Confidence 3333333333222 11111 11 1234567888899843 57999999999 77999999998877
Q ss_pred HHHH
Q psy6716 259 SLLT 262 (371)
Q Consensus 259 ~il~ 262 (371)
+|+.
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.40 E-value=3.6e-06 Score=70.21 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNF 143 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~ 143 (371)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999998876443
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.39 E-value=5e-07 Score=99.21 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----------------cchHHHHHHHHHHHHHHh
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW----------------YGDSEKLIRLLFLLAKEL 173 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~ 173 (371)
.++.+++|+||||||||++|.+++.+. +..+..+++....... ....+.....++..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 455789999999999999999987764 5567777766542111 123456677777888888
Q ss_pred CCcEEEeccchhhccCCC-----CCh--hhhhhhHHHHHHHhhcccc
Q psy6716 174 APSIVFFDEIDSMCSHRS-----TST--DVTRRMKSELLCQMDGLAS 213 (371)
Q Consensus 174 ~~~il~lDeid~l~~~~~-----~~~--~~~~~~~~~ll~~l~~~~~ 213 (371)
.|++|+||+++.+.+... ... ....+.+.+++..|.+...
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~ 1551 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1551 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 999999999998887421 111 1134556777777765543
No 110
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.33 E-value=2.7e-05 Score=77.43 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=99.0
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHH-------cCCCeEEEeccccc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATE-------TKSNFFNITSSTLT 152 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~-------~~~~~~~v~~~~l~ 152 (371)
....++|.+..++.|.+.+.. .....+.|+|+||+|+|||++|+.++.. ....++.++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSK----------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTT----------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhc----------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345689999999999988721 1122356899999999999999998642 11224444433221
Q ss_pred c-----cc------c-----------chHHHHHHHHHHHHHH-hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 153 S-----KW------Y-----------GDSEKLIRLLFLLAKE-LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 153 ~-----~~------~-----------g~~~~~~~~~~~~a~~-~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
. .+ . .........+...... ..+.+|+||+++.. ..+..+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~~l~~l- 254 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------WVLKAF- 254 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------HHHHTT-
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------HHHHHh-
Confidence 0 00 0 0111112222222222 25789999999753 112222
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEe---cCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCc
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYV---PIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKD 286 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~---~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
..+..||.||+....... . . ...+.+ ...+.++-.+++...+..... ...
T Consensus 255 ----------~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-------------~~~ 307 (591)
T 1z6t_A 255 ----------DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKA-------------DLP 307 (591)
T ss_dssp ----------CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGG-------------GSC
T ss_pred ----------cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcc-------------ccc
Confidence 124466777765421110 0 0 233444 367899999999887753111 113
Q ss_pred ccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 287 VNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 287 ~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.....+++.+.| .|-.|..+...
T Consensus 308 ~~~~~i~~~~~G-~PLal~~~a~~ 330 (591)
T 1z6t_A 308 EQAHSIIKECKG-SPLVVSLIGAL 330 (591)
T ss_dssp THHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHH
Confidence 356789999987 57666665543
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.05 E-value=2.2e-06 Score=79.98 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccccccccchHHHHHHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
.++..++|+||||+|||+++++++...+..++.+....- ... +......+..++++||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~------~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLN------FELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THH------HHHGGGTTCSCEEETTCCCSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHH------HHHHHhcchhHHHHHHHHHHHH
Confidence 445679999999999999999999988776554332210 000 1111112356789999998865
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.00 E-value=5.6e-05 Score=65.24 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
+...++|.||+|+|||++++.++... +.+++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 33568899999999999999998643 445555543
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.99 E-value=0.00018 Score=77.45 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=101.0
Q ss_pred CcccccChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc-------CCCeEEEeccccc
Q psy6716 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET-------KSNFFNITSSTLT 152 (371)
Q Consensus 80 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~-------~~~~~~v~~~~l~ 152 (371)
....++|.+..++.|.+.+.. .....+-|.|+|+.|+|||+||+.++... ...++.++.+...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWK----------LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHT----------TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHHHHhh----------ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 345689999999999988722 11223568899999999999999987652 1223455543311
Q ss_pred cc-c--------------------cchHHHHHHHHHHHHHH--hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhh
Q psy6716 153 SK-W--------------------YGDSEKLIRLLFLLAKE--LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209 (371)
Q Consensus 153 ~~-~--------------------~g~~~~~~~~~~~~a~~--~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~ 209 (371)
.. . .......+...+...-. ..+.+|+||+++... .+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------~~~ 252 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------HHT
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------HHH
Confidence 00 0 00011111111221111 237899999997540 111
Q ss_pred cccccCCCCCCCCEEEEeecCCCCCccHHHHhcccceEEecC-CCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCccc
Q psy6716 210 GLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPI-PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288 (371)
Q Consensus 210 ~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~rf~~~i~~~~-p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
.+ ..+..||.||+.+..... . ......+.++. ++.++-.++|..+.....- .....
T Consensus 253 ~~--------~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~-------------~~~~~ 309 (1249)
T 3sfz_A 253 AF--------DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKE-------------DLPAE 309 (1249)
T ss_dssp TT--------CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCST-------------TCCTH
T ss_pred hh--------cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChh-------------hCcHH
Confidence 11 123467778776532211 0 12235577775 8899999999877643221 12234
Q ss_pred HHHHHHHccCCCHHHHHHHHHH
Q psy6716 289 IEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 289 ~~~la~~~~g~s~~di~~l~~~ 310 (371)
..++++.+.| .|-.|..+...
T Consensus 310 ~~~i~~~~~g-lPLal~~~~~~ 330 (1249)
T 3sfz_A 310 AHSIIKECKG-SPLVVSLIGAL 330 (1249)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHH
Confidence 6789999987 57666655543
No 114
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.93 E-value=0.00054 Score=58.76 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=83.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc--------cccccc----------ch--HHHHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST--------LTSKWY----------GD--SEKLIRLLFLLAKE 172 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~--------l~~~~~----------g~--~~~~~~~~~~~a~~ 172 (371)
..+++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999988887764 55665554421 111100 00 001122211 2
Q ss_pred hCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC------------------CC
Q psy6716 173 LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP------------------WD 234 (371)
Q Consensus 173 ~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~------------------~~ 234 (371)
..|.++++||+-......... ......+...+ ...+-|++|+|-. +.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~----~~~~qDV~~~l-----------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~ 147 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRH----TKRWQDIQELL-----------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRET 147 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSS----SBHHHHHHHHH-----------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSC
T ss_pred cCCCEEEEeCCCCCCcccchh----HHHHHHHHHHH-----------cCCCCEEEEccccccccHHHHHHHHcCCCcCCc
Confidence 358999999987642211111 11111111122 1234566677622 45
Q ss_pred ccHHHHhcccceEEecCCCHHHHHHHHHHHHhcCCCCcchhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 235 LDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 235 l~~~l~~rf~~~i~~~~p~~~er~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
++..++++.+.+..+..|+.+ +++.+....-. .++..-..+... |+.+.|..|.+-|..
T Consensus 148 vpd~~~~~a~~v~lvD~~p~~----l~~rl~~g~vy-------------~~~~~~~a~~~~---f~~~nl~~lrelal~ 206 (228)
T 2r8r_A 148 LPDWVLQEAFDLVLIDLPPRE----LLERLRDGKVY-------------VPEQARAAIDAF---FTQTNLTALREMAMQ 206 (228)
T ss_dssp BCHHHHHTCSEEEEBCCCHHH----HHHHHHTTCCC-------------CTTCCHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred CccHHHhhCCeEEEecCCHHH----HHHHHHCCCcc-------------ChhHHHHHHHhh---hchhhHHHHHHHHHH
Confidence 677777788777777887775 33333322221 122222223332 788888877765543
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.90 E-value=6.8e-05 Score=69.72 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccccc----------------chHHHHHHHHHHHHHHhC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKWY----------------GDSEKLIRLLFLLAKELA 174 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~~----------------g~~~~~~~~~~~~a~~~~ 174 (371)
+..-++|+||||+|||++|..++... +.++++++...-..... ...+.....+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 34568899999999999999887653 56788887654321110 112222322333333456
Q ss_pred CcEEEeccchhhcc
Q psy6716 175 PSIVFFDEIDSMCS 188 (371)
Q Consensus 175 ~~il~lDeid~l~~ 188 (371)
+.+|+||.+..+.+
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 88999999999975
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.89 E-value=0.0008 Score=63.77 Aligned_cols=182 Identities=15% Similarity=0.059 Sum_probs=90.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccc--------------------cccchHHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTS--------------------KWYGDSEKLIRLLFLLA 170 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~--------------------~~~g~~~~~~~~~~~~a 170 (371)
++..+++.|++|+||||++..+|..+ +..+..+++..... .............+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765 55666666543211 00112334445566677
Q ss_pred HHhCCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCC-CCcc--HHHHhcccc-e
Q psy6716 171 KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP-WDLD--EAFRRRLEK-R 246 (371)
Q Consensus 171 ~~~~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~-~~l~--~~l~~rf~~-~ 246 (371)
......+++||-...+.. ..... .-+..+.... .+..+++|.-+... +.+. ..+...+.. .
T Consensus 179 ~~~~~DvVIIDTaGrl~~----d~~lm-~el~~i~~~~----------~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~g 243 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE----DKALI-EEMKQISNVI----------HPHEVILVIDGTIGQQAYNQALAFKEATPIGS 243 (443)
T ss_dssp HHTTCSEEEEECCCCSSC----CHHHH-HHHHHHHHHH----------CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEE
T ss_pred HhCCCCEEEEECCCcccc----hHHHH-HHHHHHHHhh----------cCceEEEEEeCCCchhHHHHHHHHHhhCCCeE
Confidence 666678999998754411 11111 1112222222 12334444333222 1111 122222222 2
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCcc-hhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy6716 247 IYVPIPDQATRVSLLTIFLQNVKVDKD-VNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAF 313 (371)
Q Consensus 247 i~~~~p~~~er~~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~a~~ 313 (371)
+.+.--|...+...+.......+.+.. +..+ ..++-....+.+.++.+.-| .+|+..|++.|..
T Consensus 244 VIlTKlD~~~~gG~~ls~~~~~g~PI~fig~G-e~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~ 308 (443)
T 3dm5_A 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGTG-EKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKE 308 (443)
T ss_dssp EEEECCSSCSSHHHHHHHHHTTCCCEEEEECS-SSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHH
T ss_pred EEEECCCCcccccHHHHHHHHHCCCEEEEEcC-CChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 444444444444333333333333211 0000 11122345677788888765 5688888877643
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.81 E-value=1.3e-05 Score=66.44 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=30.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
.-|+|+|+||+||||+++.++..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45899999999999999999999998888766543
No 118
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=0.00013 Score=67.33 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----------------cchHHHHHHHHHHHHHHhC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW----------------YGDSEKLIRLLFLLAKELA 174 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~~ 174 (371)
+..-++|+||||+|||+++..++... +.++++++........ ....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 34568899999999999999998764 5677788765432100 0122333333333334456
Q ss_pred CcEEEeccchhhcc
Q psy6716 175 PSIVFFDEIDSMCS 188 (371)
Q Consensus 175 ~~il~lDeid~l~~ 188 (371)
+.+++||.+..+.+
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998876
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.80 E-value=2e-05 Score=65.98 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=21.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHH---cCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE---TKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v 146 (371)
-++++||+|+|||+++..++.. .+..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999998655543 24444443
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=8.6e-05 Score=64.00 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=41.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc-------ccccccchH-----HHHHHHHHHHHHH----hCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST-------LTSKWYGDS-----EKLIRLLFLLAKE----LAP 175 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~-------l~~~~~g~~-----~~~~~~~~~~a~~----~~~ 175 (371)
..-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457889999999999988877654 45666553221 1111 1100 0011234444443 247
Q ss_pred cEEEeccchhh
Q psy6716 176 SIVFFDEIDSM 186 (371)
Q Consensus 176 ~il~lDeid~l 186 (371)
.+|+|||++.+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999887
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=0.00011 Score=63.80 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH--c-------CCCeEEEecccccc-c----c---cc----------------hHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE--T-------KSNFFNITSSTLTS-K----W---YG----------------DSE 160 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~--~-------~~~~~~v~~~~l~~-~----~---~g----------------~~~ 160 (371)
+..-++|+||||+|||++++.++.. . +...++++...... . . .+ ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 3456899999999999999999984 2 34577776554100 0 0 00 011
Q ss_pred ---HHHHHHHHHHHHhCCcEEEeccchhhccC
Q psy6716 161 ---KLIRLLFLLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 161 ---~~~~~~~~~a~~~~~~il~lDeid~l~~~ 189 (371)
..+..+........|.+|+||++..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11222334444557899999999988653
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=0.00024 Score=60.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
+..-++|+||||+|||++++.++...+.++++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3455899999999999999999886667777777654
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.71 E-value=1.8e-05 Score=66.05 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
...|+|+|+||||||++++.++..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35699999999999999999999999988753
No 124
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.70 E-value=0.00033 Score=68.29 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=51.4
Q ss_pred cEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC--CccHHHHhcccceEEecCCC
Q psy6716 176 SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW--DLDEAFRRRLEKRIYVPIPD 253 (371)
Q Consensus 176 ~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~rf~~~i~~~~p~ 253 (371)
-+|+|||++.+.... ...+...+....... ...++.+|.+|.+|. .++..++..|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~G-------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQKA-------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHHC-------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHHH-------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 489999999885421 112222222222211 245789999999997 78999999998889999998
Q ss_pred HHHHHHHHH
Q psy6716 254 QATRVSLLT 262 (371)
Q Consensus 254 ~~er~~il~ 262 (371)
..+...++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777763
No 125
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.67 E-value=0.001 Score=65.47 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHH
Q psy6716 85 AGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 85 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+|.+..++.|.+.+.. ......+.|.|+|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc---------ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999999988721 1112235688999999999999999996
No 126
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.67 E-value=0.0001 Score=67.51 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=49.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccccc-cc-------ccc----------------hHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSSTLT-SK-------WYG----------------DSE 160 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~l~-~~-------~~g----------------~~~ 160 (371)
+..-++|+||||+|||++|..++... +.++++++..... .. ..+ ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 34568999999999999999998764 4567788766521 00 000 011
Q ss_pred ---HHHHHHHHHHHH-hCCcEEEeccchhhcc
Q psy6716 161 ---KLIRLLFLLAKE-LAPSIVFFDEIDSMCS 188 (371)
Q Consensus 161 ---~~~~~~~~~a~~-~~~~il~lDeid~l~~ 188 (371)
..+..+....+. ..+.+|+||.+..+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123334444454 5689999999999864
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2.9e-05 Score=65.84 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=28.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
+...++|.||||+|||++++.++..++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999887643
No 128
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.63 E-value=0.00011 Score=67.94 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----c------------chHHHHHHHHHHHHHHhC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW----Y------------GDSEKLIRLLFLLAKELA 174 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~----~------------g~~~~~~~~~~~~a~~~~ 174 (371)
+..-++|+|+||+|||++|..++... +.++++++........ . ...+.....+-...+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 34568999999999999999988653 5678888774322110 0 011222222222334556
Q ss_pred CcEEEeccchhhcc
Q psy6716 175 PSIVFFDEIDSMCS 188 (371)
Q Consensus 175 ~~il~lDeid~l~~ 188 (371)
+.+|+||.+..+.+
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999999875
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00015 Score=65.31 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCCCccEEEEcCCCchHHHHHHHHHHHc-----CCCeEEEeccccccc----cc------------chHHHHHHHHHHH-
Q psy6716 112 RRPWKGVLLVGPPGTGKTMLAKAAATET-----KSNFFNITSSTLTSK----WY------------GDSEKLIRLLFLL- 169 (371)
Q Consensus 112 ~~~~~~vLl~Gp~GtGKt~la~~la~~~-----~~~~~~v~~~~l~~~----~~------------g~~~~~~~~~~~~- 169 (371)
+.++.-++|+||||+|||+++-.++... +..+++++...-... .+ ...+...-.+...
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3343458899999999999987765543 567888887643211 00 0112220111222
Q ss_pred --HHHhCCcEEEeccchhhccC
Q psy6716 170 --AKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 170 --a~~~~~~il~lDeid~l~~~ 189 (371)
.+...|.+|+||-|..+.+.
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 23346899999999999863
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.59 E-value=0.00012 Score=80.82 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=54.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecccccccccc----------------hHHHHHHHHHHHHHHh
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKWYG----------------DSEKLIRLLFLLAKEL 173 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~~~~~g----------------~~~~~~~~~~~~a~~~ 173 (371)
.+...++|+||||||||++|.+++.+ .|.++++++..+....... ..+...+......+..
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence 35567999999999999999998764 3678888888765433221 1223334444455566
Q ss_pred CCcEEEeccchhhccC
Q psy6716 174 APSIVFFDEIDSMCSH 189 (371)
Q Consensus 174 ~~~il~lDeid~l~~~ 189 (371)
.|.+|+||++..+.+.
T Consensus 1159 ~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1159 AVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp CCSEEEESCGGGCCCH
T ss_pred CCCEEEECCccccccc
Confidence 7999999999999653
No 131
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.58 E-value=0.00076 Score=56.50 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=69.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc---------cccccc-------------c----hHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST---------LTSKWY-------------G----DSEKLIRLL 166 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~---------l~~~~~-------------g----~~~~~~~~~ 166 (371)
..|++++++|.|||++|-.+|-.. |..+..+.... +...+. . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999887654 66666652211 122210 0 012233444
Q ss_pred HHHHHHh----CCcEEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHhc
Q psy6716 167 FLLAKEL----APSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRR 242 (371)
Q Consensus 167 ~~~a~~~----~~~il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~r 242 (371)
+..+... ...+|+|||+.....-.--+ ...++..+... +.+.-||.|+|. .++.++..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~-------~~ev~~~l~~R--------p~~~~vIlTGr~---ap~~l~e~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP-------LEEVISALNAR--------PGHQTVIITGRG---CHRDILDL 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC-------HHHHHHHHHTS--------CTTCEEEEECSS---CCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC-------HHHHHHHHHhC--------cCCCEEEEECCC---CcHHHHHh
Confidence 4444433 36799999997653322111 23345555322 446678888885 47888887
Q ss_pred ccceEEec
Q psy6716 243 LEKRIYVP 250 (371)
Q Consensus 243 f~~~i~~~ 250 (371)
.+.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 76665553
No 132
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=4.3e-05 Score=62.73 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=27.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
-|+|.|+||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876544
No 133
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.57 E-value=0.00054 Score=59.73 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=20.3
Q ss_pred CCccEEEEcCCCchHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la 136 (371)
+..-+.|.||+|+|||++++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568899999999999999988
No 134
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.56 E-value=4.2e-05 Score=63.78 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=27.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|+|.|+||+|||++|+.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887643
No 135
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.54 E-value=0.00026 Score=61.71 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=27.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
..++++||+|+|||.++.+++...+.+++.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3499999999999999999988887776666443
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00056 Score=59.47 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~ 149 (371)
+..-++|.||||+|||+++..++.. .+.++++++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3456899999999999998887654 25566665543
No 137
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.54 E-value=4.4e-05 Score=63.43 Aligned_cols=30 Identities=40% Similarity=0.712 Sum_probs=27.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..|+|+|+||+|||++++.++..++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 569999999999999999999999887764
No 138
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.53 E-value=0.0002 Score=66.03 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEecccccc-c----c----------------------cc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSSTLTS-K----W----------------------YG 157 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~l~~-~----~----------------------~g 157 (371)
+..-++|+||||+|||++|..++... +..+++++...... . + ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 33458899999999999999998862 45677777655210 0 0 00
Q ss_pred hHHHHHHHHHHHHHH--hCCcEEEeccchhhccC
Q psy6716 158 DSEKLIRLLFLLAKE--LAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 158 ~~~~~~~~~~~~a~~--~~~~il~lDeid~l~~~ 189 (371)
.....+..+...... ..+.+|+||.+..+...
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 111222233344444 56789999999998743
No 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.53 E-value=4.5e-05 Score=62.60 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=28.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
..++|.|++|||||++++.++..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999988753
No 140
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.51 E-value=4.2e-05 Score=63.24 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=26.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.++|.|+||+|||++++.|+..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=5.1e-05 Score=63.42 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=26.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH-cCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE-TKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~-~~~~~~~ 145 (371)
..|+|+|+||||||++++.++.. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 46999999999999999999998 6777654
No 142
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.49 E-value=0.0013 Score=63.63 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=49.2
Q ss_pred EEEeccchhhccCCCCChhhhhhhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCC--CccHHHHhcccceEEecCCCH
Q psy6716 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPW--DLDEAFRRRLEKRIYVPIPDQ 254 (371)
Q Consensus 177 il~lDeid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~~rf~~~i~~~~p~~ 254 (371)
+|+|||+..+... .... ...++..|-... ...++.+|.+|.++. .++..++..+...+.+...+.
T Consensus 300 vlvIDE~~~ll~~------~~~~-~~~~l~~Lar~g------Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 300 VVLVDEFADLMMT------VGKK-VEELIARLAQKA------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEETHHHHHHH------HHHH-HHHHHHHHHHHC------GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEeCHHHHHhh------hhHH-HHHHHHHHHHHh------hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 8999999887531 0111 222222221111 123678888888886 588888888888899999999
Q ss_pred HHHHHHHHH
Q psy6716 255 ATRVSLLTI 263 (371)
Q Consensus 255 ~er~~il~~ 263 (371)
.+...++..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888887753
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=6.1e-05 Score=63.13 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=27.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+.-|+|.|+||+||||+++.++..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3568999999999999999999999887664
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.46 E-value=0.00024 Score=62.50 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
.+..++|.|+||+|||++++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999876777777655
No 145
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=8.3e-05 Score=61.17 Aligned_cols=29 Identities=31% Similarity=0.748 Sum_probs=25.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..+.|.||+|+||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999887654
No 146
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=0.00028 Score=65.19 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccccccc----cc------------hHHHHHHHHHHHHHHhC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSKW----YG------------DSEKLIRLLFLLAKELA 174 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~~----~g------------~~~~~~~~~~~~a~~~~ 174 (371)
+..-++|+||||+|||++|..++... +.++++++........ .| ..+..+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 34558999999999999999988653 5677777765422110 01 12222333333334456
Q ss_pred CcEEEeccchhhcc
Q psy6716 175 PSIVFFDEIDSMCS 188 (371)
Q Consensus 175 ~~il~lDeid~l~~ 188 (371)
+.+|+||++..+.+
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 89999999999974
No 147
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.45 E-value=0.0003 Score=60.56 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+|||++++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998743
No 148
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.45 E-value=8e-05 Score=63.05 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=27.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
..|+|.|+||+|||++|+.++..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4589999999999999999999999886543
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.43 E-value=8.1e-05 Score=65.63 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=28.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
-++|.||||||||++|+.||..++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 150
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.43 E-value=0.00044 Score=65.02 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=46.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccccccc--------ccc------------------
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSSTLTSK--------WYG------------------ 157 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~l~~~--------~~g------------------ 157 (371)
.+..-++|+||||+|||++++.++... +...++++....... .++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 344568899999999999999776332 234777766542100 000
Q ss_pred -hHHHHHHHHHHHHHHhCCcEEEeccchhhccC
Q psy6716 158 -DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSH 189 (371)
Q Consensus 158 -~~~~~~~~~~~~a~~~~~~il~lDeid~l~~~ 189 (371)
.....+..+........|.+|+||++..+...
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01112233334444557899999999988754
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.41 E-value=9.2e-05 Score=61.98 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=29.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
+..+.|.||+|+||||+++.++...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 356889999999999999999998777777776544
No 152
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.41 E-value=7e-05 Score=61.58 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=26.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987664
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.41 E-value=0.00016 Score=63.22 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=27.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.++..|+|.||||+||||+|+.+++.++.+++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 345679999999999999999999998766553
No 154
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.40 E-value=0.00028 Score=67.82 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCccccc-ChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 79 VKWADIA-GLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 79 ~~~~~i~-G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+|+++- ++..+...+...+ .. ....++|.|+||||||+++.+++..+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i----------~~---~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAI----------KE---KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHH----------HS---SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHH----------hc---CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3555553 5556666555554 11 12379999999999999999988765
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.39 E-value=8.4e-05 Score=62.40 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
..|+|.|+||+||||+++.++..++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5699999999999999999999998876543
No 156
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=7.5e-05 Score=61.31 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
-|+|.||||+|||++++.+ ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 4889999999999999999 888888664
No 157
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=8.8e-05 Score=63.80 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+..|+|.|+||+||||+++.++..++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3569999999999999999999999876654
No 158
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.37 E-value=0.00043 Score=61.19 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH---cCCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE---TKSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~---~~~~~~~v~~~~l~ 152 (371)
.-|+|.|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 45899999999999999999997 67888766655443
No 159
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.36 E-value=0.00052 Score=63.44 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---------CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---------KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---------~~~~~~v~~~~ 150 (371)
+..-+.|+||+|+|||++++.++... +..+++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 44568899999999999999999876 23557776644
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=8.8e-05 Score=62.13 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|+|.|+|||||||+|+.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999876543
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.35 E-value=0.00013 Score=61.69 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+.-|+|.|++|+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3569999999999999999999999877654
No 162
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.35 E-value=9.9e-05 Score=63.21 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|+|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776543
No 163
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.35 E-value=0.0001 Score=60.33 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.|+|.|++|+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999988764
No 164
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00076 Score=56.51 Aligned_cols=23 Identities=48% Similarity=0.749 Sum_probs=20.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 165
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.34 E-value=0.0001 Score=63.04 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|+|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998876643
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.31 E-value=0.0021 Score=57.29 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=20.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..-++|+||+|+|||++++.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 355899999999999999998864
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.31 E-value=0.00039 Score=64.31 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEe-ccccc---------ccccchHHHHHHHHHHHHHHhCCcEEE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNIT-SSTLT---------SKWYGDSEKLIRLLFLLAKELAPSIVF 179 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~-~~~l~---------~~~~g~~~~~~~~~~~~a~~~~~~il~ 179 (371)
+...++|.||+|+||||+.++++... +..++.+. ..++. ....+.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 33468999999999999999998764 23333321 11111 000111111233355566667899999
Q ss_pred eccch
Q psy6716 180 FDEID 184 (371)
Q Consensus 180 lDeid 184 (371)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99994
No 168
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=0.00013 Score=60.73 Aligned_cols=29 Identities=34% Similarity=0.558 Sum_probs=25.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..++|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45899999999999999999999886654
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.30 E-value=0.00011 Score=61.83 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=26.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|+|.|+||+|||++++.++..++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458999999999999999999999866543
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.30 E-value=0.00011 Score=60.88 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.-|+|.|+||+|||++++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999999998876
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.29 E-value=0.001 Score=60.15 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=44.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc-------c-------------cchHHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK-------W-------------YGDSEKLIRLLFLLA 170 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~-------~-------------~g~~~~~~~~~~~~a 170 (371)
++.-++|.||+|+||||++..+|..+ +..+..+++...... + .+.........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 34568899999999999999998764 445555554322100 0 011122222334445
Q ss_pred HHhCCcEEEeccchh
Q psy6716 171 KELAPSIVFFDEIDS 185 (371)
Q Consensus 171 ~~~~~~il~lDeid~ 185 (371)
....+.+++||+...
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 556788999998753
No 172
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.28 E-value=0.00016 Score=71.37 Aligned_cols=31 Identities=35% Similarity=0.363 Sum_probs=24.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v 146 (371)
..++|+||||||||+++++++..+ +.+++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 568999999999999999988754 5555544
No 173
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.28 E-value=0.00039 Score=63.50 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=47.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---------------C----CCeEEEecccc--cccc------cc---------
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---------------K----SNFFNITSSTL--TSKW------YG--------- 157 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---------------~----~~~~~v~~~~l--~~~~------~g--------- 157 (371)
+..-++|+||||+|||++|..++... + .++++++...- .... .+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 34558999999999999999988652 2 56777776542 1100 00
Q ss_pred -------hHH---HHHHHHHHHHHH-hCCcEEEeccchhhcc
Q psy6716 158 -------DSE---KLIRLLFLLAKE-LAPSIVFFDEIDSMCS 188 (371)
Q Consensus 158 -------~~~---~~~~~~~~~a~~-~~~~il~lDeid~l~~ 188 (371)
..+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 122233344444 4578999999999864
No 174
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.00014 Score=65.36 Aligned_cols=37 Identities=41% Similarity=0.512 Sum_probs=30.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
+.-++|.||||+||||+++.++..++..++.|++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4568899999999999999999988656677776544
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.28 E-value=0.00012 Score=63.18 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=26.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..|+|.|+||+||||+++.|+..++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 569999999999999999999999876654
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.00012 Score=61.09 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=26.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..|+|.|+||+|||++++.++..++.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 468999999999999999999999876554
No 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.26 E-value=0.0022 Score=66.69 Aligned_cols=43 Identities=33% Similarity=0.359 Sum_probs=34.1
Q ss_pred cChHHHHHHHHHHhhccCCChHHhhhcCCCCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 85 AGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 85 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
+|.+..++.|.+.+. .. ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~----------~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALL----------EL-RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHH----------HC-CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh----------cc-CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899999999988772 11 12356889999999999999999853
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00011 Score=61.46 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999886
No 179
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=0.00013 Score=60.23 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHH-HcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT-ETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~-~~~~~ 142 (371)
.-|+|.|+||+||||+|+.++. ..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4588999999999999999998 44433
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.24 E-value=0.00021 Score=58.87 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=25.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
+..++|.||+|+|||++++.++..++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 346889999999999999999998876544
No 181
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.24 E-value=0.00016 Score=62.77 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=26.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..|+|.|+||+||||+++.|+..++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999876654
No 182
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.24 E-value=0.00016 Score=61.15 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|+|.|++|+|||++++.+++.++.+++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 458899999999999999999998876554
No 183
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00019 Score=61.11 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998764 5555554
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.24 E-value=0.0002 Score=61.49 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=29.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
++-|+|.||||+||+|.|+.|++.++.+ +++..++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 3568899999999999999999999765 45655554
No 185
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=0.00028 Score=58.46 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=30.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
+..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3568899999999999999999987 88888777543
No 186
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.21 E-value=0.00015 Score=62.20 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=27.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
..|+|.|+||+||||+++.|+..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999998776543
No 187
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.20 E-value=0.00025 Score=59.96 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
++.-+.|.||+|+||||+++.++..+|..+ ++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 345688999999999999999999887544 444443
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.0027 Score=55.10 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH----cCCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE----TKSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~----~~~~~~~v~~~ 149 (371)
+..-++|+|+||+|||++|..++.. .+.++++++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3445899999999999999876543 35677776543
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.18 E-value=0.0052 Score=58.13 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=44.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc----------------c----cchHHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK----------------W----YGDSEKLIRLLFLLA 170 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~----------------~----~g~~~~~~~~~~~~a 170 (371)
++.-+++.||+|+||||++..+|..+ +..+..+++...... + ..............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34668899999999999999998765 556655554321100 0 001122223344444
Q ss_pred HHhCCcEEEeccchhh
Q psy6716 171 KELAPSIVFFDEIDSM 186 (371)
Q Consensus 171 ~~~~~~il~lDeid~l 186 (371)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 4446789999988544
No 190
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.18 E-value=0.00019 Score=61.41 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999998776543
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.16 E-value=0.00032 Score=58.63 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=26.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
|.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88877654
No 192
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.16 E-value=0.0049 Score=59.00 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
++.-++|.|+||+|||+++..++... +.+++.++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44458899999999999999987643 5577776643
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.00029 Score=61.70 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.+..+.|.||+|+||||+++.|++.++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3467999999999999999999999887644
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.15 E-value=0.00022 Score=61.33 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..|+|.|+||+||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 56999999999999999999999987544
No 195
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.14 E-value=0.0004 Score=58.71 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSST 150 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~ 150 (371)
.++.-+.|.||+|+||||+++.++..+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 445668899999999999999999987 44444555443
No 196
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.13 E-value=0.00027 Score=64.23 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=29.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
..++|.||+|+|||++++.+|..++..++.+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988887754
No 197
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.13 E-value=0.00023 Score=65.32 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=26.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..++|.|++|+|||+++++++..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 459999999999999999999998887744
No 198
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.06 E-value=0.00045 Score=57.91 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 88877553
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.05 E-value=0.00026 Score=59.87 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|.|.|++|+||||+++.++. ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 77666543
No 200
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.05 E-value=0.00036 Score=60.12 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.|+|.|+||+||||+++.++..++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3789999999999999999999886554
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.05 E-value=0.00036 Score=60.00 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..+.|.||+|+||||+++.++..++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35889999999999999999999887654
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.05 E-value=0.00034 Score=61.90 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=42.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEec--cccc--------ccccchHHHHHHHHHHHHHHhCCcEE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITS--STLT--------SKWYGDSEKLIRLLFLLAKELAPSIV 178 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~--~~l~--------~~~~g~~~~~~~~~~~~a~~~~~~il 178 (371)
.+...++|.||+|+||||++++++.... ..++.... ..+. ...++......+..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 3445689999999999999999987542 22222110 0000 00011011123445555555689999
Q ss_pred Eeccch
Q psy6716 179 FFDEID 184 (371)
Q Consensus 179 ~lDeid 184 (371)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 203
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.04 E-value=0.00045 Score=58.28 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=27.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-CCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-KSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-~~~~~~v~ 147 (371)
.-|.|.|++|+||||+++.+++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 468999999999999999999998 56776654
No 204
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.04 E-value=0.0003 Score=59.20 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.|.|+|++||||||+++.++..+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999988877654
No 205
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.04 E-value=0.00035 Score=58.88 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=25.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.|.|.|++|+||||+++.+++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3789999999999999999999988655
No 206
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.00 E-value=0.00026 Score=59.08 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=25.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcC---CCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETK---SNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~ 147 (371)
-|+|.|+||+||||+++.+++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 488999999999999999999875 2355554
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.97 E-value=0.00053 Score=60.18 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=27.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
..|.|.|++|+|||++++.++..++.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5699999999999999999999999887653
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.95 E-value=0.00057 Score=57.78 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=26.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.|.|.|++|+|||++++.++..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58899999999999999999999988764
No 209
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.94 E-value=0.00046 Score=58.14 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=25.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+..|.|.|++|||||++++.++.. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 356889999999999999999998 777654
No 210
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.94 E-value=0.00056 Score=59.23 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=25.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
..+.|.||+|+|||++++.++..++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46889999999999999999999987654
No 211
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00052 Score=58.13 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999988 7777653
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.93 E-value=0.01 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
.+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 344459999999999999999988653 356666654
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.0019 Score=54.97 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEecccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSSTL 151 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~~l 151 (371)
++.-++|.|++|+|||++++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 345688999999999999999998764 56777765443
No 214
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.001 Score=60.89 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=43.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEeccc-cc----cc---ccchHHHHHHHHHHHHHHhCCcEEEeccchh
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSST-LT----SK---WYGDSEKLIRLLFLLAKELAPSIVFFDEIDS 185 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~-l~----~~---~~g~~~~~~~~~~~~a~~~~~~il~lDeid~ 185 (371)
..++|.||+|+||||++++++..... -.+.++... +. .. ++.......+..+..+-...|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 56999999999999999999987642 234443221 11 00 1100112233445555566799999999853
No 215
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.89 E-value=0.0003 Score=59.83 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=24.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCe
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNF 143 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~ 143 (371)
+.-|+|.|++|+||||+++.+++.++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999876543
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.88 E-value=0.00083 Score=58.98 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=31.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC--------eEEEecccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN--------FFNITSSTLTS 153 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~--------~~~v~~~~l~~ 153 (371)
.-|.|.|++|||||++|+.|+..++.+ +..++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 458899999999999999999998876 34567766654
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.88 E-value=0.0026 Score=60.70 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
++.-++|.|+||+|||++|..+|... +.+++.++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34458899999999999999887643 5577777653
No 218
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.88 E-value=0.00049 Score=62.73 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=29.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
.-|+|.||+|+|||+++..||+.++..++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4688999999999999999999998877765543
No 219
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.88 E-value=0.0013 Score=54.91 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.5
Q ss_pred ccEEEEcCCCchHH-HHHHHHHHHc--CCCeEEEecc
Q psy6716 116 KGVLLVGPPGTGKT-MLAKAAATET--KSNFFNITSS 149 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt-~la~~la~~~--~~~~~~v~~~ 149 (371)
.=.+++||.|+||| .|.+++.+.. +..++.+++.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 34779999999999 8999987753 5677777644
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.87 E-value=0.00081 Score=59.09 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=26.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
...|.|.||+|+||||+++.++..+|.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345889999999999999999999988655
No 221
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00065 Score=57.59 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=24.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
.-|+|.|+||+||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458899999999999999999988763
No 222
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.00039 Score=59.18 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
+.-|+|.|++|+||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999997643
No 223
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.77 E-value=0.00087 Score=60.28 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=28.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
.-++|.||+|+|||++|..+|...+..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 458899999999999999999998877766544
No 224
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.77 E-value=0.0039 Score=68.20 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=58.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHH---HcCCCeEEEecccccc----------------cccchHHHHHHHHHHHHHHhCCc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT---ETKSNFFNITSSTLTS----------------KWYGDSEKLIRLLFLLAKELAPS 176 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~---~~~~~~~~v~~~~l~~----------------~~~g~~~~~~~~~~~~a~~~~~~ 176 (371)
+-|+++||+|||||++|-.+.. ..|..+..++...-.. ......+..+..+...++..++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 3499999999999999977653 3477777777653221 12345577888888888888999
Q ss_pred EEEeccchhhccCCCC
Q psy6716 177 IVFFDEIDSMCSHRST 192 (371)
Q Consensus 177 il~lDeid~l~~~~~~ 192 (371)
+|++|.+..|.+....
T Consensus 1512 ~vvvDsv~al~~~~e~ 1527 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAEI 1527 (1706)
T ss_dssp EEEESCSTTCCCTTTT
T ss_pred EEEEccHHhCCccccc
Confidence 9999999999987543
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.75 E-value=0.00086 Score=56.78 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-++|.||||+|||++++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345699999999999999999999874
No 226
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.71 E-value=0.0014 Score=54.76 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
+.|+|.||+|+|||++++.+.......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 459999999999999999998876443
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.0014 Score=54.52 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~ 149 (371)
++..++|.|++|+|||++++.++..++ .++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345688999999999999999998763 445555543
No 228
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.69 E-value=0.013 Score=49.19 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.4
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.68 E-value=0.0013 Score=61.26 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEecc-cc--------ccc-ccchHHHHHHHHHHHHHHhCCcEE
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSS-TL--------TSK-WYGDSEKLIRLLFLLAKELAPSIV 178 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~-~l--------~~~-~~g~~~~~~~~~~~~a~~~~~~il 178 (371)
.+...++|.||+|+||||++++++.... ..++.+... .+ ... .+|.........+..+-...|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3445689999999999999999987642 233333211 00 000 001011112334444545579999
Q ss_pred Eeccch
Q psy6716 179 FFDEID 184 (371)
Q Consensus 179 ~lDeid 184 (371)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999984
No 230
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.0008 Score=57.03 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-CCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-KSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-~~~~~~ 145 (371)
.-+.|.|++|+|||++++.++..+ +..++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 458899999999999999999877 444443
No 231
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.66 E-value=0.0016 Score=55.37 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999998764
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.66 E-value=0.00094 Score=61.04 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.-|+|.||+|+|||++|+.|+..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35889999999999999999999986655544
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0042 Score=52.36 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=27.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+.-+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458899999999999999999865 5566655443
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.65 E-value=0.034 Score=52.92 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
.++.-++|.|+||+|||++|..+|... +.++..++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344458999999999999998887654 5677776543
No 235
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.64 E-value=0.001 Score=56.82 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=26.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
..+.|.|++|+|||++++.++..++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 358999999999999999999999877654
No 236
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.64 E-value=0.00082 Score=56.37 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
..+++|.||+|+|||++|..++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998866 555443
No 237
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.64 E-value=0.024 Score=51.75 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
.+..-++|.|+||+|||++|..+|... +.++.+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344458999999999999999987653 566666654
No 238
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.62 E-value=0.0013 Score=56.19 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=24.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|.|.|++|+|||++++.++. ++.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 4588999999999999999998 7766554
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.61 E-value=0.0012 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-+.|.||+|+|||++++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.59 E-value=0.0012 Score=59.40 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=26.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.-++|.||+|+|||+++..+|..++..++..|
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 34789999999999999999999876665544
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=56.39 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
+..+.|.|++|+|||++++.++..++.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3468899999999999999999999877653
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+||||+++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998753
No 243
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.58 E-value=0.0014 Score=54.63 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
-+.|.||+|+||||+++.++...+.. +.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcc
Confidence 47899999999999999999865432 34443
No 244
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.56 E-value=0.004 Score=61.93 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
+.++++|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 56999999999999998877654
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.54 E-value=0.0012 Score=59.12 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|.|+|++||||||+|+.++ .+|.+++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 458899999999999999999 57766543
No 246
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.53 E-value=0.0017 Score=54.97 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=26.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999873
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.51 E-value=0.0014 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.||+|+||||+++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999876
No 248
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.50 E-value=0.0056 Score=60.56 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTL 151 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l 151 (371)
+..|+|+|.||+||||+|++|+..+ +.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4568999999999999999999998 889988875433
No 249
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0011 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL 151 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l 151 (371)
.-|+|+|+||+||||+|+.++..++..+ ++...+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 4588999999999999999999887554 444443
No 250
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.45 E-value=0.002 Score=53.29 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCeEEEeccc
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~ 150 (371)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.45 E-value=0.02 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++.-+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344668899999999999999999764
No 252
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.45 E-value=0.0016 Score=60.74 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=26.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~ 147 (371)
.-|+|.||+|+|||+++..+|..++..++..|
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999887665543
No 253
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.43 E-value=0.0016 Score=58.58 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=23.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc-CCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET-KSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~-~~~~~ 144 (371)
.-|+|.|+||+||||+++.++... +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458999999999999999999864 54443
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.40 E-value=0.002 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+||||+++.++....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 255
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.40 E-value=0.014 Score=56.33 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=27.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
+..|+|.|++|+||||++..+|..+ +..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4579999999999999999998765 566666665
No 256
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.38 E-value=0.009 Score=58.28 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc-------------------cc---------chHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK-------------------WY---------GDSEKL 162 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~-------------------~~---------g~~~~~ 162 (371)
+...++|.||+|+|||++++.++... +.+++++...+-... .. -.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 34558899999999999999998653 445555433221000 00 023344
Q ss_pred HHHHHHHHHHhCCcEEEeccchhhcc
Q psy6716 163 IRLLFLLAKELAPSIVFFDEIDSMCS 188 (371)
Q Consensus 163 ~~~~~~~a~~~~~~il~lDeid~l~~ 188 (371)
.+.++..+....|.+|+||-+..+..
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 55566666677899999997777743
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.36 E-value=0.002 Score=54.71 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEec
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITS 148 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~ 148 (371)
.-+.|.||+|+||||+++.++..++..+..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 458899999999999999999987622333443
No 258
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.35 E-value=0.017 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..+++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998776654
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.35 E-value=0.0021 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=21.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998754
No 260
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.34 E-value=0.051 Score=52.57 Aligned_cols=36 Identities=6% Similarity=-0.057 Sum_probs=27.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
+..-++|.|+||+|||+++..+|... +.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34458899999999999999988654 4577777654
No 261
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.33 E-value=0.0067 Score=50.77 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=23.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v 146 (371)
.-.+++||+|+|||+.+-.++... +..++.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 347889999999998887777654 5555554
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.32 E-value=0.002 Score=54.26 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.2
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..+.|.||+|+||||+++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999999999999999998653
No 263
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.29 E-value=0.011 Score=60.45 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=34.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccCCCh--HHhhhcCCCCccEEEEcCCCchHHHHHHHHHH
Q psy6716 78 NVKWADIAGLDDAKDLLYEAIVLPSIIP--AYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 78 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~--~~~~~~~~~~~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+|.++.-.....+.+...-..|.... ...... .....+++.||+|+|||+++..+..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l-~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY-QNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH-hCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3457666555666666655444443221 111111 1224699999999999997776644
No 264
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0046 Score=55.78 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||+|+||||+++.+|..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999864
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.22 E-value=0.0029 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+.-+.|.||+|+|||++++.|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998764
No 266
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.21 E-value=0.086 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=17.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5699999999999987655443
No 267
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.20 E-value=0.005 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..+.|.||+|+||||+++.++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999765
No 268
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.19 E-value=0.049 Score=46.24 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=15.0
Q ss_pred ccEEEEcCCCchHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLA 132 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la 132 (371)
+.+++.+|+|+|||..+
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999773
No 269
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.17 E-value=0.022 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.3
Q ss_pred ccEEEEcCCCchHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la 136 (371)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 569999999999998766543
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.0068 Score=54.50 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34578899999999999999998654 4466666554
No 271
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.10 E-value=0.0066 Score=60.84 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAA 135 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~l 135 (371)
-.||+||||||||+++-.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 4789999999999765443
No 272
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.09 E-value=0.004 Score=53.61 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEeccccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~~l~ 152 (371)
..+-|.||||+|||++|+.|+..++.+++ +..++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 34779999999999999999999988765 444443
No 273
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.09 E-value=0.0091 Score=58.08 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=27.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~ 150 (371)
.-|++.|.||+|||++|+.++..++ .....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4588999999999999999999874 3444455444
No 274
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.08 E-value=0.0018 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
|.|.|++|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999998743
No 275
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.04 E-value=0.035 Score=57.45 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
.-++|+||.|+|||++.|.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4588999999999999999874
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.03 E-value=0.0078 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+.-|.|.||+|+||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35578999999999999999998765
No 277
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.02 E-value=0.034 Score=46.48 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.4
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 278
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0066 Score=56.03 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||+|+||||+++.+|..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34568899999999999999999865
No 279
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.00 E-value=0.0069 Score=58.76 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=41.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC--CeEEEeccc-ccc---cc--------cchHHHHHHHHHHHHHHhCCcEEEe
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS--NFFNITSST-LTS---KW--------YGDSEKLIRLLFLLAKELAPSIVFF 180 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~--~~~~v~~~~-l~~---~~--------~g~~~~~~~~~~~~a~~~~~~il~l 180 (371)
+..++|.||+|+||||++++++..... ..+.+.... +.. .+ .+............+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 356999999999999999999987643 344443221 110 00 0000011223334444567999999
Q ss_pred ccch
Q psy6716 181 DEID 184 (371)
Q Consensus 181 Deid 184 (371)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9883
No 280
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.00 E-value=0.038 Score=47.59 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.4
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
..+++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999997643
No 281
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.99 E-value=0.0042 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+.-+.|.||+|+||||+++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3558899999999999999999876
No 282
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.99 E-value=0.035 Score=47.42 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.4
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999997643
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.98 E-value=0.0046 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||.|+|||++++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33458899999999999999999976
No 284
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.97 E-value=0.0042 Score=53.36 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFN 145 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~ 145 (371)
.-|.|.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999999864
No 285
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.94 E-value=0.0025 Score=57.15 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=25.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccccc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETK---SNFFNITSSTLT 152 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~l~ 152 (371)
-|.|.||+|+||||+++.++..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999998765 345566666554
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.92 E-value=0.0048 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
..-+.|.||+|+||||++++++....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.91 E-value=0.011 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
++..+++.|++|+|||+++..+|..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44568899999999999999998764 5566666554
No 288
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.90 E-value=0.038 Score=47.47 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=28.7
Q ss_pred CCcccccChHHHHHHHHHHhhccCCChHH---hhhcCCCCccEEEEcCCCchHHHHHH
Q psy6716 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAY---FDKLRRPWKGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 79 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~vLl~Gp~GtGKt~la~ 133 (371)
.+|+++.-...+.+.+.+.- +....+-. .... ...+.+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~-~~~~~~~Q~~~i~~~-~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLA-LQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTT-CCBCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC-CCCCCHHHHHHHHHH-hCCCCEEEEeCCCCcHHHHHH
Confidence 35677655556666655431 11111110 0111 123569999999999998643
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.90 E-value=0.0048 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-+.|.||+|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999998764
No 290
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.89 E-value=0.052 Score=50.01 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=24.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
..|.|.|+||+|||+++..++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 568999999999999999998764 44444443
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.86 E-value=0.087 Score=47.19 Aligned_cols=35 Identities=29% Similarity=0.134 Sum_probs=27.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+..+++.|++|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4568889999999999999998765 5566666554
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.0039 Score=51.13 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=17.6
Q ss_pred ccEEEEcCCCchHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAA 135 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~l 135 (371)
.-+.|.||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45889999999999999964
No 293
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.85 E-value=0.0055 Score=52.87 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC--CCeEE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK--SNFFN 145 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~--~~~~~ 145 (371)
+.-|.|.||+|+||||+++.++..++ .+++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 34588999999999999999999886 35443
No 294
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.84 E-value=0.013 Score=56.22 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=27.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeEEEecc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSS 149 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~~v~~~ 149 (371)
..+++.+|+|+|||.++-.++...+.+++.+-+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988877777776666544
No 295
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.79 E-value=0.091 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+++.+|+|+|||..+-..+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5799999999999988655443
No 296
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.79 E-value=0.0084 Score=56.68 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
+-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999988765
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.79 E-value=0.028 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999887653
No 298
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.78 E-value=0.061 Score=45.53 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=22.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999998887776543 56666654
No 299
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.78 E-value=0.0052 Score=50.22 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
...++||.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3478999999999999999999874
No 300
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.77 E-value=0.0073 Score=59.45 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEeccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSST 150 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~~ 150 (371)
+..|+|.|++|+|||++|+++++.++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 35688999999999999999999876 7777776443
No 301
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.77 E-value=0.0059 Score=53.18 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 447799999999999999999987654
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.72 E-value=0.0062 Score=54.86 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
.+...+.|+||+|+|||++++.|+......
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 444568899999999999999999887333
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.70 E-value=0.049 Score=53.03 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=24.5
Q ss_pred CCccEEEEcCCCchHHHHHHHH--HHHc--CCCeEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAA--ATET--KSNFFNITS 148 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~l--a~~~--~~~~~~v~~ 148 (371)
+...++|.||+|+|||++++.+ +... +...++++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4456999999999999999994 4332 334455543
No 304
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.59 E-value=0.061 Score=45.53 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.7
Q ss_pred ccEEEEcCCCchHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKA 134 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~ 134 (371)
..+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999986433
No 305
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.59 E-value=0.076 Score=45.40 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.0
Q ss_pred ccEEEEcCCCchHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLA 132 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la 132 (371)
+.+++.+|+|+|||..+
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 57999999999999764
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.53 E-value=0.0049 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=15.4
Q ss_pred ccEEEEcCCCchHHHHHHHHH-HHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA-TET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la-~~~ 139 (371)
.-+.|.||+|+||||+++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 764
No 307
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.49 E-value=0.42 Score=45.15 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEeccc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNITSST 150 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~~ 150 (371)
++..+++.|++|+||||++-.+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45678899999999999999988654 66777777653
No 308
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.46 E-value=0.047 Score=47.13 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.5
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
..+++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 569999999999998743
No 309
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.43 E-value=0.016 Score=52.40 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+||||+++.++..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 310
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.43 E-value=0.022 Score=53.72 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..-++|.||+|+||||+.++++....
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 334589999999999999999998764
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.43 E-value=0.017 Score=52.36 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=22.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+||||+++.++..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577999999999999999998765
No 312
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.42 E-value=0.0098 Score=57.45 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
..|+|.|.+||||||++++|++.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999874
No 313
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.42 E-value=0.0079 Score=51.05 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcCCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETKSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~~~~~~v 146 (371)
.|-|+|..|||||++++.++. +|.+++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 588999999999999999997 88887643
No 314
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.41 E-value=0.082 Score=45.27 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHH-HHc--CCCeEEEe
Q psy6716 117 GVLLVGPPGTGKTMLAKAAA-TET--KSNFFNIT 147 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la-~~~--~~~~~~v~ 147 (371)
-.+++||.|+|||+.+-..+ +.. +..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36789999999996665444 332 44555554
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.41 E-value=0.026 Score=53.45 Aligned_cols=35 Identities=31% Similarity=0.246 Sum_probs=27.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEecc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSS 149 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~ 149 (371)
+..+++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3579999999999999999998765 4566666654
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.36 E-value=0.0094 Score=53.99 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=22.3
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||+|+||||+++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 33457899999999999999999865
No 317
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.019 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
....|++.|++|+|||+++.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999998753
No 318
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.32 E-value=0.1 Score=54.26 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.7
Q ss_pred ccEEEEcCCCchHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la 136 (371)
.-++|+||.|+|||++.|.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999999984
No 319
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.29 E-value=0.0015 Score=62.04 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhcccccCCCCCCCCEEEEee-cCCCCCccHHHHh--cccceEEecCCCHH-HHHHHH
Q psy6716 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAA-TNFPWDLDEAFRR--RLEKRIYVPIPDQA-TRVSLL 261 (371)
Q Consensus 197 ~~~~~~~ll~~l~~~~~~~~~~~~~~v~vI~t-tn~~~~l~~~l~~--rf~~~i~~~~p~~~-er~~il 261 (371)
..++++.|+..|+++... ..+ +++ ||+++.+++++++ ||+..|++++|+.. .|.+|+
T Consensus 128 e~rvl~~LL~~~dg~~~~------~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 128 EERILDALLPPAKNQWGE------VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccccc------ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 456777888888877542 122 454 9999999999999 99999999999987 677765
No 320
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.29 E-value=0.0085 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+...+.|.||+|+||||+++.++....
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 445688999999999999999997553
No 321
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.26 E-value=0.014 Score=57.12 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=28.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC----CCeEEEecccc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK----SNFFNITSSTL 151 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~----~~~~~v~~~~l 151 (371)
+..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35688999999999999999999874 34544555443
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.25 E-value=0.011 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-.+|+||.|+|||+++++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999999999998765
No 323
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.24 E-value=0.054 Score=48.50 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEeccccccc---------------cc-----chHHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITSSTLTSK---------------WY-----GDSEKLIRLLFLLA 170 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~~~l~~~---------------~~-----g~~~~~~~~~~~~a 170 (371)
++..+.+.|++|+|||+++..+|..+ +..+..+++.-.... .. .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568888999999999999998764 455555544211100 00 01112224445555
Q ss_pred HHhCCcEEEeccchhh
Q psy6716 171 KELAPSIVFFDEIDSM 186 (371)
Q Consensus 171 ~~~~~~il~lDeid~l 186 (371)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 4456789999987433
No 324
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.15 E-value=0.012 Score=52.72 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=25.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc----CCCeEEEe
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET----KSNFFNIT 147 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~ 147 (371)
+..-++|.||||+|||++++.++... |.+++.++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34568899999999999999988754 43555554
No 325
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.15 E-value=0.0099 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+||||+++.++...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998754
No 326
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.14 E-value=0.052 Score=47.17 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998643
No 327
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.014 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-|.|.|++|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999984
No 328
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.12 E-value=0.13 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+||||+++.++...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44568899999999999999998754
No 329
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.10 E-value=0.0062 Score=53.63 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+.-|.|.|++|+||||+++.|+..+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35688999999999999999999883
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.0096 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998753
No 331
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.09 E-value=0.0096 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+.-+.|.||+|+|||||++.++....
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999997643
No 332
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.06 E-value=0.11 Score=44.66 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=14.9
Q ss_pred ccEEEEcCCCchHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLA 132 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la 132 (371)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 333
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.04 E-value=0.077 Score=52.51 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++..+.|.||+|+||||+++.++...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44568899999999999999998754
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.04 E-value=0.013 Score=47.86 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=24.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
..+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999998865 34444444
No 335
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.04 E-value=0.51 Score=43.32 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.1
Q ss_pred ccEEEEcCCCchHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la 136 (371)
..+++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764433
No 336
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.02 E-value=0.035 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+.-+.|.|++|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4568899999999999999999865
No 337
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.02 E-value=0.083 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++..+.|.||+|+||||+++.++...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44568899999999999999998754
No 338
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.02 E-value=0.011 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.||+|+||||+.+.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999764
No 339
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.00 E-value=0.1 Score=56.63 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++..+.|.||+|+|||++++.+.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 445688999999999999999987654
No 340
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.98 E-value=0.054 Score=50.15 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=21.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...++|.||+|+|||++++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3569999999999999999988753
No 341
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.97 E-value=0.014 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458899999999999999998764
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.92 E-value=0.013 Score=54.33 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+...++|.||+|+||||++++++....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345699999999999999999998754
No 343
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.92 E-value=0.012 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+||||+++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998753
No 344
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.91 E-value=0.012 Score=51.77 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
++.-+.|.||+|+|||||++.++....
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999997653
No 345
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.91 E-value=0.0095 Score=50.57 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.-+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44889999999999999999875
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.90 E-value=0.012 Score=50.07 Aligned_cols=26 Identities=42% Similarity=0.431 Sum_probs=22.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
..-+.|.||.|+||||+.+.++....
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999987653
No 347
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.86 E-value=0.073 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...+.|.||||+|||++.++++...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3558899999999999999998754
No 348
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.86 E-value=0.03 Score=47.70 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=25.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
.-|.|.|++|+|||++++.+++.++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45889999999999999999999987543
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.80 E-value=0.014 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++..+.|.||+|+||||+++.++...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999998764
No 350
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.80 E-value=0.017 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
+..-+.|.||+|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455889999999999999999985
No 351
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.79 E-value=0.015 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+.|.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.79 E-value=0.016 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
+..-+.|.||+|+||||+++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345889999999999999999975
No 353
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.78 E-value=0.016 Score=49.29 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=24.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC---CCeEEE
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK---SNFFNI 146 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v 146 (371)
.-|.|.|++|+||||+++.++..+. .+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4477899999999999999998764 455433
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.77 E-value=0.016 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+||||||+.|.|+...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999754
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.76 E-value=0.044 Score=51.68 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
++..+++.|++|+|||+++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 34568889999999999999998765 445655554
No 356
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.74 E-value=0.015 Score=51.56 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+|||||++.|+...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44558899999999999999998764
No 357
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.74 E-value=0.02 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=18.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-|.|.|++|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 447889999999999999999876
No 358
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.73 E-value=0.014 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..-+.|.||+|+||||+.+.++....
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334588999999999999999987653
No 359
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.73 E-value=0.014 Score=50.90 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..-+.|.||+|+||||+++.++....
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999987653
No 360
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.73 E-value=0.015 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..-+.|.||+|+|||||++.++....
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 334588999999999999999997653
No 361
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.72 E-value=0.014 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+|+||||+++.++...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998754
No 362
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.71 E-value=0.015 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||.|+||||+.+.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999764
No 363
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.69 E-value=0.21 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...+.|.|+||+|||++++.++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998654
No 364
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.68 E-value=0.015 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
..-+.|.||.|+||||+.+.++....
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999997653
No 365
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.65 E-value=0.019 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
..+.|.||+|+|||||++.|+.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999987654
No 366
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.64 E-value=0.016 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||.|+|||||.+.++...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458899999999999999998764
No 367
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.63 E-value=0.015 Score=50.72 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=22.1
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..+.|.||.|+|||||.+.++....
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999987653
No 368
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.63 E-value=0.015 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+||||+++.++...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33458899999999999999998754
No 369
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.61 E-value=0.017 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||.|+||||+++.++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999998754
No 370
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.61 E-value=0.018 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+.|.|++|+|||++++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.60 E-value=0.018 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+||||+.+.|+...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33457899999999999999999754
No 372
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.59 E-value=0.021 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-|.|.|++|+|||++++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999876
No 373
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.58 E-value=0.019 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.+.|.|++|+|||++++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 374
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.56 E-value=0.022 Score=55.74 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC---CCeEEEeccc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK---SNFFNITSST 150 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~---~~~~~v~~~~ 150 (371)
..|+|+|++|+|||++++.+++.++ .++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5688999999999999999998764 4666666443
No 375
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.52 E-value=0.11 Score=48.08 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.3
Q ss_pred ccEEEEcCCCchHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAA 135 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~l 135 (371)
..+++.+|+|+|||..+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 56999999999999865443
No 376
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.51 E-value=0.012 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
..|++.|.||+|||++++.++..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999988653
No 377
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.49 E-value=0.021 Score=52.63 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=21.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+|+||||+.+.|+...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999754
No 378
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.48 E-value=0.021 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+||||||+.|.|+...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3457899999999999999999754
No 379
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.021 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.5
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+|+||||+.+.|+...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999754
No 380
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.46 E-value=0.16 Score=44.33 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.|.|.|+||+|||++.+++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999764
No 381
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.46 E-value=0.018 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.6
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+.-+.|.||+|+||||+.+.++...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998764
No 382
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.45 E-value=0.021 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.||+|+||||+.+.|+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999754
No 383
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.45 E-value=0.048 Score=46.21 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHH-HHHHHHHHc--CCCeEEE
Q psy6716 117 GVLLVGPPGTGKTM-LAKAAATET--KSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~-la~~la~~~--~~~~~~v 146 (371)
-.+++||.|+|||+ +.+.+.+.. +..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 36789999999999 556654432 4455444
No 384
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.44 E-value=0.018 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
+..-+.|.||.|+|||||++.++....
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 334588999999999999999997653
No 385
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.43 E-value=0.022 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 386
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.41 E-value=0.075 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=19.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..+++.+|+|+|||.++-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 56899999999999998776654
No 387
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.41 E-value=0.022 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+||||+.+.|+...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33457899999999999999999754
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.37 E-value=0.027 Score=47.60 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...|+|.|++|+|||+++.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998754
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.34 E-value=0.02 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..-+.|.||+|+||||+.+.|+...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999754
No 390
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.28 E-value=0.022 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=18.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..++|.||||||||+++..+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999988776554
No 391
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.28 E-value=0.029 Score=48.05 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.7
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCC
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKS 141 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~ 141 (371)
+.-|.|.|++|+|||++++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345778899999999999999987644
No 392
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.28 E-value=0.019 Score=51.72 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.+...+.|.||+|+||||+++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344568999999999999999998754
No 393
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.25 E-value=0.024 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.||+|+||||+.+.|+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 457899999999999999999754
No 394
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.23 E-value=0.026 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 395
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.16 E-value=0.02 Score=50.43 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=21.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
...+.|.||+|+||||+.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999765
No 396
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.15 E-value=0.026 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.+.|.|++|+|||++.+.++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 397
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.13 E-value=0.07 Score=46.75 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.8
Q ss_pred ccEEEEcCCCchHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKA 134 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~ 134 (371)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5699999999999986543
No 398
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.10 E-value=0.028 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.|++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 399
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.10 E-value=0.19 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.-|.|.|.||+|||+|.+++...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45889999999999999998764
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.08 E-value=0.028 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHH
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
+..-+.|.||+||||||+.+.|+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4456889999999999999999964
No 401
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.08 E-value=0.022 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~ 137 (371)
.|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 402
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.06 E-value=0.028 Score=45.72 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..+.|.|++|+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 403
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.06 E-value=0.03 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998764
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.05 E-value=0.029 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-.+|+||.|+|||++..|++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998654
No 405
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.04 E-value=0.025 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
++.-+.|.||.|+||||+.+.++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44558899999999999999998754
No 406
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.03 E-value=0.051 Score=50.73 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc---CCCeEEEec
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET---KSNFFNITS 148 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~~ 148 (371)
...++++.||+|+|||++++.++... +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34679999999999999999987653 445555554
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.03 E-value=0.03 Score=48.11 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=23.3
Q ss_pred CccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
+.-+.|.|+.|+||||+++.++.. +..+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 345789999999999999999987 44443
No 408
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.03 E-value=0.028 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999876
No 409
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.98 E-value=0.037 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.0
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
...|++.|++|+|||++++++...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999753
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.95 E-value=0.032 Score=44.65 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 411
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.92 E-value=0.033 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 412
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.92 E-value=0.00031 Score=67.47 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred hhHHHHHHHhhcccccCCCCCCCCEEEEeecCCCCCccHHHHh--cccc--eEEecCCC--HHHHHHHHHHHHhcCCCCc
Q psy6716 199 RMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEK--RIYVPIPD--QATRVSLLTIFLQNVKVDK 272 (371)
Q Consensus 199 ~~~~~ll~~l~~~~~~~~~~~~~~v~vI~ttn~~~~l~~~l~~--rf~~--~i~~~~p~--~~er~~il~~~~~~~~~~~ 272 (371)
++...++..++.... .....++|++|||.++.+++++.| ||+. .+.+|.|+ .++|.+|++.+..
T Consensus 171 ~~~~~ll~~l~~~~~----~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------ 240 (456)
T 2c9o_A 171 KLDPSIFESLQKERV----EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------ 240 (456)
T ss_dssp EECHHHHHHHHHTTC----CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH------
T ss_pred hhhHHHHHHHhhccC----CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH------
Confidence 445566666652211 113356666999999999999877 8977 56777774 4677777653321
Q ss_pred chhhhhhcccCCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy6716 273 DVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 310 (371)
.+++.++..+.| |+||..+|..
T Consensus 241 --------------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 --------------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp --------------HHHHHTC-----------------
T ss_pred --------------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 268888999999 9999999854
No 413
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.89 E-value=0.031 Score=45.09 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=20.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45999999999999999998753
No 414
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.88 E-value=0.033 Score=44.61 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
-.|++.|++|+|||++++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998653
No 415
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.87 E-value=0.04 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.8
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 478999999999999999999875
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.87 E-value=0.033 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998754
No 417
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.86 E-value=0.14 Score=55.59 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++..+-|+||+|+||||+++++.+-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344568899999999999999998754
No 418
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.86 E-value=0.41 Score=43.97 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=15.3
Q ss_pred ccEEEEcCCCchHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAK 133 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~ 133 (371)
..+++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 419
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.83 E-value=0.034 Score=44.98 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 420
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.80 E-value=0.066 Score=44.89 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHcCCC-eEEEeccc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSN-FFNITSST 150 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~~~~-~~~v~~~~ 150 (371)
.|..-|+|+|.||+||+++|+.+.+.++.. +..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 455678999999999999999998877542 33444444
No 421
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.78 E-value=0.035 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 422
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.77 E-value=0.035 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 423
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.76 E-value=0.25 Score=46.63 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=24.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc----CCCeEEEecc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET----KSNFFNITSS 149 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~----~~~~~~v~~~ 149 (371)
++++.+|+|+|||..+-.++... +..++.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999888776543 5555555443
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.035 Score=53.00 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+...+.|.||+|+|||||+|.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34569999999999999999998753
No 425
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.73 E-value=0.2 Score=52.55 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.0
Q ss_pred ccEEEEcCCCchHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la 136 (371)
..++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568899999999999999984
No 426
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.71 E-value=0.038 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 427
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.034 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 428
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.68 E-value=0.036 Score=44.43 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=18.9
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~ 137 (371)
.|++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.68 E-value=0.082 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
-++|.|+.|+||||+.+.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 430
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.68 E-value=0.17 Score=48.31 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.8
Q ss_pred CccEEEEcCCCchHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLA 132 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la 132 (371)
+..+++.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 477999999999999774
No 431
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.67 E-value=0.033 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHcCCCe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATETKSNF 143 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~~~~~ 143 (371)
+.|+|++|||||++++.+...+|.++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999998888664
No 432
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.66 E-value=0.039 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999863
No 433
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.66 E-value=0.039 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.|++.|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 434
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.66 E-value=0.034 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..++|.|++|+|||++++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 435
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.64 E-value=0.032 Score=50.21 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHcCCCeE
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATETKSNFF 144 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~~~~~~ 144 (371)
...++||.|++|+|||++|-.+.. .|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 457899999999999999988865 344433
No 436
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.64 E-value=0.039 Score=50.87 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 114 PWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 114 ~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
+..-+.|.||+|+|||||+++++...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33458899999999999999998754
No 437
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.64 E-value=0.15 Score=51.37 Aligned_cols=20 Identities=45% Similarity=0.614 Sum_probs=17.1
Q ss_pred CccEEEEcCCCchHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKA 134 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~ 134 (371)
..++++.||+|+|||+.+-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 36799999999999998743
No 438
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.63 E-value=0.034 Score=44.45 Aligned_cols=21 Identities=48% Similarity=0.781 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~ 137 (371)
.|++.|++|+|||++++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 439
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.63 E-value=0.25 Score=45.94 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.0
Q ss_pred ccEEEEcCCCchHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKA 134 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~ 134 (371)
+.+++.+|+|+|||..+-.
T Consensus 75 ~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHH
Confidence 5699999999999976554
No 440
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.60 E-value=0.066 Score=45.14 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHc--CCCeEEE
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATET--KSNFFNI 146 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~~--~~~~~~v 146 (371)
-|.|.|+.|+||||.++.++..+ +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 37788999999999999999987 4454443
No 441
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.60 E-value=0.045 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999753
No 442
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.58 E-value=0.039 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 443
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.56 E-value=0.04 Score=45.18 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.56 E-value=0.056 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+.|.||+|+||||+.++++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4588999999999999999987
No 445
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.51 E-value=0.041 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999853
No 446
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.49 E-value=0.041 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 447
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.44 E-value=0.044 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 448
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.42 E-value=0.042 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 449
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.41 E-value=0.03 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.-+.|.||+|+|||||+++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 457899999999999999999 54
No 450
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.40 E-value=0.044 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 451
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.40 E-value=0.044 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
-.|++.|++|+|||++++++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 452
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.40 E-value=0.037 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=18.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..++|.||||||||+++..+...
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999988776554
No 453
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.38 E-value=0.045 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 454
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.38 E-value=0.073 Score=48.82 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
..+.|.||+|+|||++.+.|+......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 458899999999999999999987654
No 455
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.37 E-value=0.098 Score=45.77 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=19.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..|+|.|+||+|||++..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999976
No 456
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.34 E-value=0.045 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999999888654
No 457
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.31 E-value=0.046 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 458
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.28 E-value=0.1 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|.|.|+||+|||++.+++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999863
No 459
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.28 E-value=0.047 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=20.9
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
...|++.|++|+|||++++++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999998754
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.27 E-value=0.074 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcCCC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETKSN 142 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~~~ 142 (371)
..+.|.||+|+|||+|++.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 458899999999999999999987543
No 461
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.25 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.9
Q ss_pred CccEEEEcCCCchHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAA 136 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la 136 (371)
...+|+.||+|+|||.++-..+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHH
Confidence 3679999999999998875543
No 462
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.26 E-value=0.083 Score=44.21 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHc---CCCeEEEe
Q psy6716 118 VLLVGPPGTGKTMLAKAAATET---KSNFFNIT 147 (371)
Q Consensus 118 vLl~Gp~GtGKt~la~~la~~~---~~~~~~v~ 147 (371)
|.|.|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999876 55665543
No 463
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.26 E-value=0.049 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 464
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.26 E-value=0.047 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.9
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 465
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.24 E-value=0.048 Score=44.23 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 466
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.23 E-value=0.043 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..|++.|++|+|||++++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 467
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.14 E-value=0.052 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||++++++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 468
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.10 E-value=0.046 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.|++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999998764
No 469
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.10 E-value=0.051 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 470
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.09 E-value=0.051 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
..++|.|++|+|||+++..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999988753
No 471
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.08 E-value=0.11 Score=45.21 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=26.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc--CCCeEEEec
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET--KSNFFNITS 148 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~--~~~~~~v~~ 148 (371)
..+++.|.+|+|||+++..++..+ +..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 458899999999999999998765 555555553
No 472
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.054 Score=43.88 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.03 E-value=0.055 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||++++++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 474
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.03 E-value=0.055 Score=44.04 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998754
No 475
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.01 E-value=0.76 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=18.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+++.+|+|+|||..+-..+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 5699999999999988666543
No 476
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.98 E-value=0.033 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
.-+.|.||+|+|||++.++++....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3578999999999999999987543
No 477
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.97 E-value=0.056 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999887754
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.97 E-value=0.048 Score=44.19 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998864
No 479
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.95 E-value=0.03 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.4
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
...+.|.|++|+|||++.++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999998643
No 480
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.058 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.2
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
-.|+|.|++|+|||+|++.+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 481
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.94 E-value=0.047 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998765
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.93 E-value=0.057 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999988764
No 483
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.89 E-value=0.059 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 484
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.88 E-value=0.059 Score=44.38 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 485
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.057 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 486
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.87 E-value=0.059 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||+|++++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998754
No 487
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.84 E-value=0.054 Score=47.73 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|.|.|+||+|||++.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 488
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.83 E-value=0.059 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHHcC
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATETK 140 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~~~ 140 (371)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4588999999999999999996543
No 489
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.81 E-value=0.067 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.2
Q ss_pred CccEEEEcCCCchHHHHHHHHHHH
Q psy6716 115 WKGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 115 ~~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
...|++.|++|+|||++++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 490
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.057 Score=55.34 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=17.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAAT 137 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~ 137 (371)
..+++.||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999988766543
No 491
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.78 E-value=0.061 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 492
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.78 E-value=0.061 Score=43.70 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||++++.+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.77 E-value=0.063 Score=44.14 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 494
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.76 E-value=0.062 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||+|++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998753
No 495
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.75 E-value=0.063 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy6716 117 GVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 117 ~vLl~Gp~GtGKt~la~~la~~ 138 (371)
.|++.|++|+|||++++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 496
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.72 E-value=0.061 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||+|++++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999764
No 497
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.71 E-value=0.064 Score=44.24 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 498
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.70 E-value=0.41 Score=51.71 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCCccEEEEcCCCchHHHHHHHHHHHc
Q psy6716 113 RPWKGVLLVGPPGTGKTMLAKAAATET 139 (371)
Q Consensus 113 ~~~~~vLl~Gp~GtGKt~la~~la~~~ 139 (371)
.++..+.|.||+|+||||+++.++...
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999998764
No 499
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.065 Score=44.02 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|++.|++|+|||++++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.68 E-value=0.058 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchHHHHHHHHHHH
Q psy6716 116 KGVLLVGPPGTGKTMLAKAAATE 138 (371)
Q Consensus 116 ~~vLl~Gp~GtGKt~la~~la~~ 138 (371)
..|+|.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
Done!