RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6716
(371 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 237 bits (606), Expect = 1e-77
Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 33/269 (12%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+AG ++AK+ L E + + + R KGVLLVGPPG GKT LA+A A
Sbjct: 5 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS---- 193
E + F + S + G +R LF AK AP IVF DEID++ R +
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 124
Query: 194 TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPI 251
D + ++LL +MDG + + +++++AATN P LD A R R +++I +
Sbjct: 125 NDEREQTLNQLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 178
Query: 252 PDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDA 311
PD R +L I + + +DV++ +LA+R G+ AD+ + +A
Sbjct: 179 PDVKGREQILRIHAR-------------GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 225
Query: 312 AFMNLRRYLNQNPAVAMKDIPDKELDKAI 340
A + R + MKD L++A
Sbjct: 226 ALLAARE---GRRKITMKD-----LEEAA 246
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 235 bits (600), Expect = 1e-76
Identities = 86/277 (31%), Positives = 141/277 (50%), Gaps = 31/277 (11%)
Query: 72 VLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKL-RRPWKGVLLVGPPGTGKTM 130
+ + + +AD+AG D+AK+ + E + P+ F KL + KGVL+VGPPGTGKT+
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLRE-PSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 131 LAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR 190
LAKA A E K FF I+ S + G +R +F AK+ AP I+F DEID++ R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 191 STS----TDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLE 244
D + +++L +MDG + N+ ++++AATN P LD A R R +
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFD 174
Query: 245 KRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADI 304
+++ V +PD R +L + ++ V + D++ ++A G+S AD+
Sbjct: 175 RQVVVGLPDVRGREQILKVHMR-------------RVPLAPDIDAAIIARGTPGFSGADL 221
Query: 305 TIVCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIV 341
+ +AA R V+M + +K DK ++
Sbjct: 222 ANLVNEAALFAARG---NKRVVSMVEF-EKAKDKIMM 254
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 190 bits (484), Expect = 3e-59
Identities = 94/279 (33%), Positives = 153/279 (54%), Gaps = 30/279 (10%)
Query: 78 NVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKL-RRPWKGVLLVGPPGTGKTMLAKAAA 136
V W DI GL+D K L E + P P F K P KGVL GPPG GKT+LAKA A
Sbjct: 3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 62
Query: 137 TETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-- 194
E ++NF +I L + W+G+SE +R +F A++ AP ++FFDE+DS+ R +
Sbjct: 63 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 122
Query: 195 --DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVP 250
R+ +++L +MDG+++ K+V I+ ATN P +D A R RL++ IY+P
Sbjct: 123 GGGAADRVINQILTEMDGMST------KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 176
Query: 251 IPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRD 310
+PD+ +RV++L L+ V KDV++E L + G+S AD+T +C+
Sbjct: 177 LPDEKSRVAILKANLRKSPVAKDVDLEFLA-------------KMTNGFSGADLTEICQR 223
Query: 311 AAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQADFDEAV 349
A + +R + ++ +++ + + ++ + D+ V
Sbjct: 224 ACKLAIRESIES----EIRRERERQTNPSAMEVEEDDPV 258
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 155 bits (393), Expect = 6e-46
Identities = 92/279 (32%), Positives = 151/279 (54%), Gaps = 29/279 (10%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKL-RRPWKGVLLVGPPGTGKTMLAKAAAT 137
V + D+ G + E + LP PA F + +P +G+LL GPPGTGKT++A+A A
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 138 ETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRS-TSTDV 196
ET + FF I + SK G+SE +R F A++ AP+I+F DE+D++ R T +V
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120
Query: 197 TRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQ 254
RR+ S+LL MDGL ++ V+++AATN P +D A RR R ++ + + IPD
Sbjct: 121 ERRIVSQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 174
Query: 255 ATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFM 314
R+ +L I + N+K+ DV++E +A G+ AD+ +C +AA
Sbjct: 175 TGRLEILQIHTK-------------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 221
Query: 315 NLRRYLNQNPAVAMKD--IPDKELDK-AIVQADFDEAVR 350
+R+ ++ + ++D I + ++ A+ DF A+
Sbjct: 222 AIRKKMDL---IDLEDETIDAEVMNSLAVTMDDFRWALS 257
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 129 bits (325), Expect = 3e-35
Identities = 33/257 (12%), Positives = 77/257 (29%), Gaps = 26/257 (10%)
Query: 32 LLNIIQ-LNQDKPVNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWAD--IAGLD 88
+++ + PV + + D +++ V + +V +
Sbjct: 33 TSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMK 92
Query: 89 DAKDLLYEAIV--LPSIIPAYFDKL--RRPWKGVLLVGPPGTGKTMLAKAAATET--KSN 142
+ L P + R V++ G +GKT L A K
Sbjct: 93 QGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDK 152
Query: 143 FFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHR--STSTDVTRRM 200
+ + S + D + + + ++ D + ++ +T++ R
Sbjct: 153 YATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRG 210
Query: 201 KSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR------RLEKRIYVPIPDQ 254
+LL + +A+ +++A+ N P D+ R V D
Sbjct: 211 AFDLLSDIGAMAASRG------CVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTDV 263
Query: 255 ATRVSLLTIFLQNVKVD 271
+LT + ++
Sbjct: 264 DGEWQVLTRTGEGLQRL 280
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 104 bits (259), Expect = 1e-26
Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 37/260 (14%)
Query: 83 DIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN 142
I D + + L ++ + R P VLL GPP +GKT LA A E+
Sbjct: 10 GIIKWGDPVTRVLDDGEL--LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 143 FFNITSSTLTSKWYGDSE-KLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMK 201
F I S + ++ + ++ +F A + S V D+I+ + + + +
Sbjct: 68 FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVL 127
Query: 202 SELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEA-FRRRLEKRIYVPIPDQATRVSL 260
LL + + +LI+ T+ L E I+V P+ AT L
Sbjct: 128 QALLVLLKKA-----PPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQL 180
Query: 261 LTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYL 320
L D +A++++G + M +
Sbjct: 181 LEALELLGNFK--------------DKERTTIAQQVKGKKVW----IGIKKLLMLIEM-- 220
Query: 321 NQNPAVAMKDIPDKELDKAI 340
+++ P+ + K +
Sbjct: 221 ------SLQMDPEYRVRKFL 234
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 97.2 bits (241), Expect = 1e-23
Identities = 60/299 (20%), Positives = 108/299 (36%), Gaps = 25/299 (8%)
Query: 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLR--RPWKGVLLVGPPGTGKTMLAKAAATETKS 141
I G DAK + A+ + LR K +L++GP G GKT +A+ A +
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 75
Query: 142 NFFNITSSTL--TSKWYGDSEKLIRLLFLLAKE-----LAPSIVFFDEIDSMCSHR-STS 193
F + ++ + + +IR L A IVF DEID +C +
Sbjct: 76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG 135
Query: 194 TDVTRR-MKSELLCQMDGL-ASVSNEDPNKS-VLILAATNF----PWDLDEAFRRRLEKR 246
DV+R ++ +LL ++G S + +L +A+ F P DL + RL R
Sbjct: 136 ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 195
Query: 247 IYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITI 306
+ + A +LT ++ + V + + A + ++ +
Sbjct: 196 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD----AVKKIAEAAFRVNE 251
Query: 307 VCRDAAFMNLRRYLNQNPAVAMKDIPDKELDKAIVQAD-FDEAVRNCPKTVRPEDAEKF 364
+ L + + D + A +A+ + V ED +F
Sbjct: 252 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG---EVVENEDLSRF 307
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 92.3 bits (228), Expect = 4e-22
Identities = 41/293 (13%), Positives = 79/293 (26%), Gaps = 37/293 (12%)
Query: 79 VKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATE 138
V + D + D L E I K LL G PG+GKT L A E
Sbjct: 4 VNFTDKQFENRLNDNLEELIQGK--------KAVESPTAFLLGGQPGSGKTSLRSAIFEE 55
Query: 139 TKSNFFNITSSTLT---SKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTD 195
T+ N I + T + + + + + + + +
Sbjct: 56 TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115
Query: 196 VTRRMKSELLCQMDGLASVSNE------DPNKSVLILAATNFPWDLDEAFRR--RLEKRI 247
T R + L + E K L + R +
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQ 175
Query: 248 YVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIV 307
I + +L T+ + D + E ++ YSS + +
Sbjct: 176 AHDIVVKNLPTNLETLHKTGLFSDIRL----------------YNREGVKLYSSLETPSI 219
Query: 308 CRDAAFMNLRR--YLNQNPAVAMKDIPDKELDKAIVQADFDEAVRNCPKTVRP 358
+ ++ I K + + +A++ ++++P
Sbjct: 220 SPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQP 272
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 87.8 bits (217), Expect = 6e-20
Identities = 43/313 (13%), Positives = 81/313 (25%), Gaps = 52/313 (16%)
Query: 39 NQDKPVNEMYEAILKKLKLD----PEEKKLARNILSEVLKAETNVKWADIAGLDDAKDLL 94
NQ + + +L K ++D E+ L + + + A +++ +
Sbjct: 67 NQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGV 126
Query: 95 ----YEAIVLPSIIPAYFDKLRR--PWK-GVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147
+ S++ + + P K L GP +GKT LA A N+
Sbjct: 127 AWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 186
Query: 148 SSTLTSK-WYGDSEKLIRLLFLLAKELA------PSIVFFDEIDSMCSHRSTSTDVTRRM 200
G + ++F K PS + +D++ + S V
Sbjct: 187 LPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEK 246
Query: 201 KSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATRV 258
K + N + R K+I D
Sbjct: 247 KHLNKRTQ------------IFPPGIVTMN---EYSVPKTLQARFVKQIDFRPKDYLKHC 291
Query: 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRR 318
L E L K I +L + A+ + R
Sbjct: 292 --LER------------SEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKER 337
Query: 319 YLNQNPAVAMKDI 331
+ ++
Sbjct: 338 L---DKEFSLSVY 347
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 69.6 bits (169), Expect = 3e-14
Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 16/201 (7%)
Query: 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139
+ G + K L + + P + +LL GPPG GKT LA A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAK-------ARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRR 199
N + + + L I+F DEI +
Sbjct: 60 GVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 200 MKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRR--RLEKRIYVPIPDQATR 257
+ G A+ + ++ AT P + + + + P++ +
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQ 172
Query: 258 VSLLTIFLQNVKVDKDVNIEV 278
+ L V++ ++ +E+
Sbjct: 173 GVMRDARLLGVRITEEAALEI 193
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 64.8 bits (156), Expect = 2e-12
Identities = 33/258 (12%), Positives = 68/258 (26%), Gaps = 25/258 (9%)
Query: 102 SIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSN----FFNITSSTLTSKWYG 157
++ + + L+G PGTGKT+ + K F I +
Sbjct: 30 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 89
Query: 158 DSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLC----QMDGLAS 213
E L + F + R + L L
Sbjct: 90 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ 149
Query: 214 VSNEDPNKSVLILAATNFPWDLDEAF-RRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDK 272
+++ + ++ + L+ R YV T+ + I L K
Sbjct: 150 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK--- 206
Query: 273 DVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQNPAVAMKDIP 332
L + ++++A+ + D + R ++ A
Sbjct: 207 ----AGLAEGSYSEDILQMIADITGAQTPLDT-------NRGDARLAIDILYRSAY--AA 253
Query: 333 DKELDKAIVQADFDEAVR 350
+ K I D ++ +
Sbjct: 254 QQNGRKHIAPEDVRKSSK 271
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 51.1 bits (121), Expect = 4e-08
Identities = 45/269 (16%), Positives = 77/269 (28%), Gaps = 38/269 (14%)
Query: 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139
+ G ++ K L A+ VLL GPPG GKT LA A+E
Sbjct: 7 SLDEFIGQENVKKKLSLAL-------EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 59
Query: 140 KSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST-DVTR 198
++N TS + + +L ++F DEI +
Sbjct: 60 QTNIHV------TSGPVLVKQGDMA--AILTSLERGDVLFIDEIHRLNKAVEELLYSAIE 111
Query: 199 RMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRV 258
+ +++ A D L+ A T R +
Sbjct: 112 DFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRF-------------GII 158
Query: 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRR 318
L + + L +D E++A+R G I + +R
Sbjct: 159 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL---------TKR 209
Query: 319 YLNQNPAVAMKDIPDKELDKAIVQADFDE 347
+ V I + K + + D+
Sbjct: 210 VRDMLTVVKADRINTDIVLKTMEVLNIDD 238
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 47.6 bits (112), Expect = 9e-07
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 82 ADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAAT 137
+ I G +D K L V P I GVL+ G GTGK+ +A A
Sbjct: 7 SAIVGQEDMKLALLLTAVDPGI------------GGVLVFGDRGTGKSTAVRALAA 50
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 45.4 bits (106), Expect = 3e-06
Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 4/185 (2%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAP 175
+ V L GPPG GKT L A+ KS+ + G ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 176 SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235
S V + R V +L + A S+ + +I
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 236 D---EAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVL 292
+A R+ L + + ++ ++ KDV + + K +++ + +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVT-KENRNHLLPDI 180
Query: 293 AERLE 297
++
Sbjct: 181 VTCVQ 185
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 45.9 bits (107), Expect = 3e-06
Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 8/200 (4%)
Query: 80 KWADIAGLDDAKDLLYEAI-----VLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKA 134
+ G + L + + ++ +L GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 135 AATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTST 194
A E + +S + SK ++ L + +E ++
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNA---GVKNALDNMSVVGYFKHNEEAQNLNGKHFVII 128
Query: 195 DVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQ 254
S G + + ++++ + R L+ + P +
Sbjct: 129 MDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANS 188
Query: 255 ATRVSLLTIFLQNVKVDKDV 274
+ + K+D +V
Sbjct: 189 IKSRLMTIAIREKFKLDPNV 208
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 45.5 bits (107), Expect = 6e-06
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 115 WKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY--GDSEKLIRLL 166
K +L++GP G GKT +A+ A + F + ++ T Y + + +IR L
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 41.7 bits (96), Expect = 6e-05
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139
++ ++ + L P +P LL GP GTGK A
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESI 57
Query: 140 KSNFFNITSSTLTSKWYGDSEKL 162
+ + KL
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKL 80
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 41.5 bits (97), Expect = 7e-05
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAA------------TETKSNFFNITSSTLTSKWYGDS 159
RR LLVG G GKT +A+ A + +I S +K+ GD
Sbjct: 36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 95
Query: 160 EKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTS---TDVTRRMKSEL 204
EK + L ++ SI+F DEI ++ + S D +K L
Sbjct: 96 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 143
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 40.1 bits (92), Expect = 3e-04
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 8/166 (4%)
Query: 109 DKLRRPWKG-VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLF 167
+KL+ L++G TGK+ + K E + + + Y + + L
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 81
Query: 168 L-------LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPN 220
L ++ I M + + + R+ L + AS N
Sbjct: 82 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIV 141
Query: 221 KSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQ 266
+L A + + + + LL +L+
Sbjct: 142 LDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLR 187
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 39.7 bits (92), Expect = 3e-04
Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 55/224 (24%)
Query: 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATET 139
+AD+ G + L + L I AY L G G GKT +A+ A
Sbjct: 10 TFADVVGQEHVLTALANGLSLGRIHHAY-----------LFSGTRGVGKTSIARLLAKGL 58
Query: 140 KS------------------------NFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAP 175
+ I +++ T D+ L+ +
Sbjct: 59 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV--EDTRDLLDNVQYAPARGRF 116
Query: 176 SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235
+ DE+ + +R + LL + E+P + V L AT P L
Sbjct: 117 KVYLIDEVHML----------SRHSFNALLKTL--------EEPPEHVKFLLATTDPQKL 158
Query: 236 DEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVL 279
R + + + R L I + + +++L
Sbjct: 159 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 202
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.2 bits (90), Expect = 3e-04
Identities = 22/176 (12%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+LL G PG+GK+ +A+A A + S+ L +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHF-----------HSDDLWG---YIKHGRIDPW 52
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237
+ + + + R K +DG+ ++
Sbjct: 53 LPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAA 112
Query: 238 AFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLA 293
R R V+ L ++ + + V D+ + +
Sbjct: 113 EAIERCLDR-GGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQ-SAIN 166
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 39.8 bits (92), Expect = 3e-04
Identities = 48/311 (15%), Positives = 92/311 (29%), Gaps = 35/311 (11%)
Query: 61 EKKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLL 120
EK ++++ + +K + G D A + L EAI + A +P L
Sbjct: 2 EKSVSQSDRDTLKNLGDRLK-MLVFGQDKAIEALTEAIKM---ARAGLGHEHKPVGSFLF 57
Query: 121 VGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDS----------EKLIRLLFLLA 170
GP G GKT + + S + LL
Sbjct: 58 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 117
Query: 171 KELAPSIVFFDEIDSMCS----------HRSTSTDVTRRMKSELLCQMDGLASVSNEDPN 220
+ +++ DEI+ T TD R + + +
Sbjct: 118 IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 177
Query: 221 KSVLILAATNFPWDLDEAFRRRLEKRIYVPIPDQATRVSLLTIF--LQNVKVDKDVNIEV 278
+ + L + D E ++ P+ R+ + F L + + V+ +
Sbjct: 178 RKSIGLIHQDNSTDAMEEIKKIF-------TPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 230
Query: 279 LNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRRYLNQN--PAVAMKDIPDKEL 336
+ ++V D L E + R + R + N +A + + +
Sbjct: 231 VELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLV 290
Query: 337 DKAIVQADFDE 347
D V D+
Sbjct: 291 DGGQVTVALDK 301
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 39.7 bits (91), Expect = 3e-04
Identities = 29/280 (10%), Positives = 65/280 (23%), Gaps = 49/280 (17%)
Query: 84 IAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNF 143
+ + L + + A L +G G GKT LAK
Sbjct: 18 LRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA 74
Query: 144 FNITSSTLTSKWYGDSEKLIR---------------------------LLFLLAKELAPS 176
+ + + + L+ L E
Sbjct: 75 AKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYL 134
Query: 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD 236
+V DE SM S + + + +L+ + +
Sbjct: 135 LVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGF----LLVASDVRALSYMR 190
Query: 237 EAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERL 296
E + + + L TI Q + + + + +E++++
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQR------AELGLRDTVWEPRH-LELISDVY 243
Query: 297 EGYSSA-----DITIVCRDAAFMNLRRYLNQNPAVAMKDI 331
+ + A M +++ +
Sbjct: 244 GEDKGGDGSARRAIVALKMACEMAEAM---GRDSLSEDLV 280
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.8 bits (81), Expect = 0.004
Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 9/135 (6%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAP 175
+ ++L G GK+ + + + + +L + E
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAE-----GGIEFDA 58
Query: 176 SIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDL 235
+ + + V ++ +D + + + + W
Sbjct: 59 DGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVG 118
Query: 236 ----DEAFRRRLEKR 246
R R
Sbjct: 119 VRCDGAVAEGRETAR 133
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.8 bits (81), Expect = 0.004
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 113 RPW--KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSE 160
RP+ K V ++G +GK++L A + + G E
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 35.6 bits (82), Expect = 0.006
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 32/152 (21%)
Query: 118 VLLVGPPGTGKTMLAKA--------AATETKSNFFNITSSTLTSKWYG-------DSEKL 162
VL+ G G GK ++A+ N +I ++ +G +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 163 IRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKS 222
F LA +F DEI + + R ++S ++ G ++ +
Sbjct: 86 KEGFFELADG---GTLFLDEIGEL--SLEAQAKLLRVIESGKFYRLGG-----RKEIEVN 135
Query: 223 VLILAATNFPWDLDEA-----FRRRLEKRIYV 249
V ILAATN ++ E FR L R+ V
Sbjct: 136 VRILAATNR--NIKELVKEGKFREDLYYRLGV 165
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 35.6 bits (81), Expect = 0.007
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 103 IIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY------ 156
+ + +++ +LL+GP G+GKT++A+ A +++LT Y
Sbjct: 56 VELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVE 115
Query: 157 GDSEKLIRLLFLLAKELAPSIVFFDEIDSMC---SHRSTSTDVTRRMKSELLCQM 208
+L++ ++ IVF DEID + +RS + DV+ + L ++
Sbjct: 116 NILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 34.7 bits (79), Expect = 0.013
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 25/144 (17%)
Query: 62 KKLARNILSEVLKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLV 121
KL ++L+ E + + G D+A + +AI A RP L +
Sbjct: 4 SKLLEGEREKLLRLEEELH-KRVVGQDEAIRAVADAIRRAR---AGLKDPNRPIGSFLFL 59
Query: 122 GPPGTGKTMLAKAAATE---TKSNFFNITSSTLTSKW--------------YGDSEKLIR 164
GP G GKT LAK A T+ I + K Y + +L
Sbjct: 60 GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTE 119
Query: 165 LLFLLAKELAPSIVFFDEIDSMCS 188
+ + S++ FDEI+
Sbjct: 120 AV----RRRPYSVILFDEIEKAHP 139
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 33.8 bits (76), Expect = 0.016
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 10/136 (7%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+ GTGKT L K + T + L A +I
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237
V + ++ + ++ + + + +L+ +
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKL----------DLILVEGFKHEEIAKIV 114
Query: 238 AFRRRLEKRIYVPIPD 253
FR R + D
Sbjct: 115 LFRDGAGHRPEELVID 130
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.4 bits (75), Expect = 0.019
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNIT 147
+ + +VG G G T + + A F +
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 33.4 bits (75), Expect = 0.022
Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 22/185 (11%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+L+ G PGTGKT +A+ A E L KE
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQHLEV-------------------GKLVKENHFYT 48
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237
+ E+D+ + M+ ++ + + + + + +
Sbjct: 49 EYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEV 108
Query: 238 AFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKV--DKDVNIEVLNVKVDK-DVNIEVLAE 294
F R +++ + + I + + + D+ + N +++ +E + E
Sbjct: 109 LFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRE 168
Query: 295 RLEGY 299
R+E
Sbjct: 169 RVEVL 173
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 33.0 bits (74), Expect = 0.025
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 7/134 (5%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNI-------TSSTLTSKWYGDSEKLIRLLFLLA 170
+LVG PG+GK+ + + A + T ++ + D E+ R +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDV 63
Query: 171 KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230
A + + S + + ++ V N +LA +
Sbjct: 64 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPD 123
Query: 231 FPWDLDEAFRRRLE 244
+R
Sbjct: 124 RAEKYRALMAKRAP 137
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 33.3 bits (75), Expect = 0.025
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIR 164
V+ VG PG GK+ + N + + + +R
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALR 63
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 33.2 bits (74), Expect = 0.029
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146
+ + LVGP G GK+ + + A + F++
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.4 bits (72), Expect = 0.035
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGD 158
+L +G PG+GK+ A+ + F+NI
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAH 44
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 32.5 bits (73), Expect = 0.041
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 111 LRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150
+R+ ++L+G G G+ + T+ F T
Sbjct: 2 MRKT---LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 38
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.2 bits (72), Expect = 0.046
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146
K ++ +G G+GK+ LA+A A + F +
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.0 bits (71), Expect = 0.086
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 106 AYFDKLRRPWK------GVLLVGPPGTGKTMLAKAAATETKSNFFN 145
F+KL ++ +L+ PG G L A +
Sbjct: 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQ 54
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.8 bits (71), Expect = 0.087
Identities = 11/98 (11%), Positives = 25/98 (25%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+L G GTGKT+L +N + ++
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNL 88
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVS 215
+ + + + ++ + S+S
Sbjct: 89 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLS 126
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.1 bits (69), Expect = 0.12
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNI 146
+LL G PG GKT L K A+++ + N+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.1 bits (69), Expect = 0.13
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150
RP +++ GP GTGK+ L K E +F SST
Sbjct: 2 RP---IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.1 bits (69), Expect = 0.13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
+++ G PG GKT L K
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 31.2 bits (69), Expect = 0.13
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145
+L+G G+GK+ +A A + + F +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLD 36
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.2 bits (69), Expect = 0.13
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNIT 147
+ L G +GK +A+A
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGRSV 38
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.1 bits (69), Expect = 0.14
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 113 RPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150
RP V+L GP G GK+ L K E S F S T
Sbjct: 1 RP---VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHT 35
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 31.2 bits (69), Expect = 0.14
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFN 145
V L G G GKT ++ A +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 30.7 bits (68), Expect = 0.18
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 19/101 (18%)
Query: 109 DKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFL 168
+KL++ K + +VG PG+GK + K + ++++ L +
Sbjct: 3 EKLKKS-KIIFVVGGPGSGKGTQCEKIV--QKYGYTHLSTGDLLRAEVSSGSARGK---- 55
Query: 169 LAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMD 209
+ M + + M + +
Sbjct: 56 ------------MLSEIMEKGQLVPLETVLDMLRDAMVAKV 84
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.7 bits (68), Expect = 0.18
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156
V+L GP GK+ + + + F+++++T +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPG 43
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.7 bits (68), Expect = 0.19
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
+++VG P GKT ++K
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 30.3 bits (68), Expect = 0.22
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 116 KGVLLVGPPGTGKTMLAKA 134
GVLL G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.0 bits (66), Expect = 0.25
Identities = 12/108 (11%), Positives = 26/108 (24%), Gaps = 4/108 (3%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+L +G GKT L K++ T + I+ +
Sbjct: 3 LLFLGLDNAGKTTLLHM----LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 58
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225
+ + + D + + E + +I
Sbjct: 59 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.3 bits (67), Expect = 0.26
Identities = 18/191 (9%), Positives = 51/191 (26%), Gaps = 23/191 (12%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+ ++G PG GK + +F ++++ L G + L I
Sbjct: 11 IFVLGGPGAGKGTQCEKLV--KDYSFVHLSAGDLLRAEQGRAGSQYGEL----------I 58
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWD--- 234
+ + T + + + +
Sbjct: 59 KNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFIL 118
Query: 235 LDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLN--------VKVDKD 286
+ + +R+ + + K+ ++ V+ V+V D
Sbjct: 119 FFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD 178
Query: 287 VNIEVLAERLE 297
++E + + ++
Sbjct: 179 RSVEDVYKDVQ 189
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.0 bits (66), Expect = 0.27
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSST 150
++ GP G GK+ K A + ++ +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.2 bits (67), Expect = 0.28
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLT 152
++ P G GK+ L +A ++ S T
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT 39
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.4 bits (65), Expect = 0.28
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 118 VLLVGPPGTGKT-MLAKAAATETKSNFFNITSSTLTSKWY 156
L P G+GK+ + A A + S T +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG 50
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 30.4 bits (68), Expect = 0.30
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 112 RRPWKGVLLVGPPGTGKTMLAKAAA 136
RR +L+G PG GKT + + A
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLA 64
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 29.9 bits (67), Expect = 0.30
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 116 KGVLLVGPPGTGKTMLA 132
GVL+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.0 bits (67), Expect = 0.30
Identities = 22/190 (11%), Positives = 62/190 (32%), Gaps = 29/190 (15%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFF---NITSSTLTSKWYGDSE--KLIRLLFLLAKE 172
+L+ G + ++ + ++ + G + + L +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 77
Query: 173 LAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFP 232
V + + M T++ + L ++ +P + +I+ T
Sbjct: 78 YTRKYVIVHDCERM----------TQQAANAFLKALE--------EPPEYAVIVLNTRRW 119
Query: 233 WDLDEAFRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVL 292
L + R+ R+ V +P + + I + +++ + + K + ++
Sbjct: 120 HYLLPTIKSRV-FRVVVNVPKEFRDLVKEKI----GDLWEELPLLERDFKTALEA-YKLG 173
Query: 293 AERLEGYSSA 302
AE+L G +
Sbjct: 174 AEKLSGLMES 183
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.8 bits (66), Expect = 0.33
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLF 167
V++ G P +GK + TK +I++ L + +
Sbjct: 6 VMISGAPASGKGTQCELIK--TKYQLAHISAGDLLRAEIAAGSENGKRAK 53
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.4 bits (67), Expect = 0.34
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
LV P G GK+MLA A
Sbjct: 32 GALVSPGGAGKSMLALQLA 50
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.5 bits (66), Expect = 0.37
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 116 KGVLLVGPPGTGKTMLA 132
GVL+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.5 bits (65), Expect = 0.43
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156
++L+GPPG GK A + + ++ + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQ--ERFHAAHLATGDMLRSQI 41
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 29.7 bits (65), Expect = 0.44
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
G TGKT L+ + + D+E R L ++
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKI--IFIDTENTFRPDRLRDIADRFNV 97
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208
+D++ R+ +++ + + +
Sbjct: 98 DHDAVLDNVLYARAYTSEHQMELLDYVAAKF 128
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.6 bits (65), Expect = 0.44
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146
K ++ G PG GK+ + + N
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.8 bits (65), Expect = 0.49
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 118 VLLVGPPGTGKTMLA 132
+ G TGKT +
Sbjct: 26 TEMFGEFRTGKTQIC 40
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 29.7 bits (65), Expect = 0.50
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
L G TGK+ L A
Sbjct: 37 TELFGEFRTGKSQLCHTLA 55
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.6 bits (65), Expect = 0.51
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146
K V++ G PG G T ++ A + N
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.9 bits (63), Expect = 0.54
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRFLPQI 28
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.2 bits (64), Expect = 0.62
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKL 162
V ++G PG+GK + ++++ L + K
Sbjct: 9 VFVLGGPGSGKGTQCANIV--RDFGWVHLSAGDLLRQEQQSGSKD 51
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.1 bits (64), Expect = 0.65
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 118 VLLVGPPGTGKTMLAK 133
+L+GPPG GK A
Sbjct: 6 AVLLGPPGAGKGTQAP 21
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.0 bits (64), Expect = 0.67
Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 13/134 (9%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTL-------TSKWYGDSEKLIRLLFLLA 170
++G PG+GK ++ +++S L ++ ++ I L+
Sbjct: 9 AAIMGAPGSGKGTVSSRIT--KHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 171 KELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATN 230
++ +V + + + ++E L + + +V N + V+ T
Sbjct: 67 DDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLT- 125
Query: 231 FPWDLDEAFRRRLE 244
D E +RL+
Sbjct: 126 ---DRPETVVKRLK 136
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.2 bits (64), Expect = 0.67
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 9/181 (4%)
Query: 116 KGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAP 175
+ VL VG +GKT+L T + + + ++ L L +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 176 SIVFFDEIDSMCSHRSTSTDVTRRMKS--ELLCQMDGLASVSNEDPNKSVLILAATNFPW 233
D S D + ++ + + S N L++A
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK--Q 118
Query: 234 DLDEA-----FRRRLEKRIYVPIPDQATRVSLLTIFLQNVKVDKDVNIEVLNVKVDKDVN 288
D+ A +++LEK + ++ S L E ++ V
Sbjct: 119 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVE 178
Query: 289 I 289
Sbjct: 179 F 179
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 29.5 bits (65), Expect = 0.71
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 44 VNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWAD 83
+E+ A+ + L + E+ + +V+ W +
Sbjct: 405 RDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQE 444
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.9 bits (63), Expect = 0.82
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 118 VLLVGPPGTGKTMLA 132
+ G G+GKT LA
Sbjct: 39 TEVFGEFGSGKTQLA 53
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 0.82
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 118 VLLVGPPGTGKT-MLAKAAA 136
LVG G+GKT AK A
Sbjct: 13 WFLVGLQGSGKTTTAAKLAL 32
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.7 bits (63), Expect = 0.86
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 118 VLLVGPPGTGKTMLAK 133
VLL+GPPG GK A
Sbjct: 3 VLLLGPPGAGKGTQAV 18
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 0.86
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 118 VLLVGPPGTGK-TMLAKAAA 136
++LVG GTGK T K A
Sbjct: 15 IMLVGVQGTGKATTAGKLAY 34
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.1 bits (64), Expect = 0.89
Identities = 17/162 (10%), Positives = 35/162 (21%), Gaps = 36/162 (22%)
Query: 118 VLLVGPPGTGKTM-------------------------LAKAAATETKSNFFNITSSTLT 152
++ PG GKT +A + + +
Sbjct: 12 TIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR 71
Query: 153 SKWYGDSEKLI----RLLFLLAKELAP---SIVFFDEIDSMCSHRSTSTDVTRRMKSELL 205
++ G + L + +++ DE + R S +
Sbjct: 72 AEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPA----SIAARGYISTRV 127
Query: 206 CQMDGLASVSNEDPNKSVLILAATNFPWDLDEAFRRRLEKRI 247
+ P S +N P +E
Sbjct: 128 EMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNS 169
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.8 bits (63), Expect = 0.92
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 118 VLLVGPPGTGKTMLA 132
L+ G GTGKT+ +
Sbjct: 29 TLVSGTSGTGKTLFS 43
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.6 bits (64), Expect = 0.92
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 74 KAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWK--GVLLVGPPGTGKTML 131
K + W I L Y+ I + + A L+ K ++ GP TGK+
Sbjct: 15 KIDEGGDWRPIVQF-----LRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYF 69
Query: 132 AKA 134
+
Sbjct: 70 GMS 72
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.5 bits (63), Expect = 1.0
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 118 VLLVGPPGTGK-TMLAKAAA 136
+L+VG G GK T + K A
Sbjct: 12 ILMVGVNGVGKTTTIGKLAR 31
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.5 bits (62), Expect = 1.1
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 122 GPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSIVFFD 181
GP G GK L KA A + + DS + R+L L A + D
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLL-------------DSGAIYRVLALAALHHHVDVASED 56
Query: 182 EIDSMCSHRSTSTDVTRRMKSELLCQMD 209
+ + SH T +L D
Sbjct: 57 ALVPLASHLDVRFVSTNGNLEVILEGED 84
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 1.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 118 VLLVGPPGTGKTMLAKAAATE 138
G G+GKT + +
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVN 57
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.3 bits (62), Expect = 1.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 118 VLLVGPPGTGKTMLAK 133
++L+G PG GK A+
Sbjct: 3 LVLMGLPGAGKGTQAE 18
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.0 bits (61), Expect = 1.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 118 VLLVGPPGTGKTMLAK 133
++L+G P GK A+
Sbjct: 3 IILLGAPVAGKGTQAQ 18
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.0 bits (61), Expect = 1.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 118 VLLVGPPGTGKTMLAK 133
V ++G PG GK
Sbjct: 4 VFVLGGPGAGKGTQCA 19
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.9 bits (61), Expect = 1.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 118 VLLVGPPGTGKTMLAK 133
++L+G PG GK A
Sbjct: 3 IVLMGLPGAGKGTQAD 18
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.7 bits (60), Expect = 1.4
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIR 164
+L++G GKT + K + S TL + +
Sbjct: 5 LLMLGLDNAGKTTILKK----FNGEDVDTISPTLGFNIKTLEHRGFK 47
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.2 bits (62), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 118 VLLVGPPGTGKT-MLAKAAA 136
VL+VG G GKT +AK
Sbjct: 9 VLVVGVNGVGKTTTIAKLGR 28
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.2 bits (62), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 118 VLLVGPPGTGK-TMLAKAAA 136
+++VG GTGK T K A
Sbjct: 14 IMVVGVNGTGKTTSCGKLAK 33
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 26.8 bits (59), Expect = 1.6
Identities = 13/65 (20%), Positives = 20/65 (30%)
Query: 259 SLLTIFLQNVKVDKDVNIEVLNVKVDKDVNIEVLAERLEGYSSADITIVCRDAAFMNLRR 318
S L F + + + I K++ V LE Y + D D L
Sbjct: 14 SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 73
Query: 319 YLNQN 323
Y +
Sbjct: 74 YPVDD 78
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 28.2 bits (62), Expect = 1.7
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 100 LPSI-IPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNI 146
LP I +P RP G+ +G P KT+ A ET+ N ++
Sbjct: 436 LPGISVPCGQSN-GRPI-GLQFIGKPFDEKTLYRVAYQYETQYNLHDV 481
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 80 KWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATE 138
++ D A +L + + ++ P L GPPGTGKT A E
Sbjct: 10 NLDEVTAQDHAVTVLKKTLKSANL-PHM-----------LFYGPPGTGKTSTILALTKE 56
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.8 bits (61), Expect = 1.9
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 104 IPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTS 153
IP +F+ + + GP G+GK+ + + S S
Sbjct: 16 IPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 65
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.0 bits (60), Expect = 3.3
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 115 WKG--VLLVGPPGTGKTMLAKAAATETKSN 142
KG + L G G GKT+L
Sbjct: 66 AKGGKIGLFGGAGVGKTVLIMELINNVAKA 95
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.8 bits (58), Expect = 3.5
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIR 164
+LL+G GKT L K A+E S+ + S + +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVW 65
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 26.8 bits (59), Expect = 3.6
Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Query: 95 YEAIVLPSIIPAYFDKLRRPWKGVLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSK 154
Y+ S+ + K + L GP TGKT +A+A A F+ + T +
Sbjct: 84 YDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA--HTVPFYGCVNWTNENF 141
Query: 155 WYGDSEKLIRLLFLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASV 214
+ D + + + +E + + ++ D + +++ +
Sbjct: 142 PFND---CVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTP--VIVT 196
Query: 215 SNEDPNKSVLILAATNFPWDLDEAFRRRL 243
SN + + + T + + + R+
Sbjct: 197 SNTNMCAVIDGNSTTF---EHQQPLQDRM 222
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.9 bits (58), Expect = 3.6
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 99 VLPSIIPAYFDKLRRPWKG--VLLVGPPGTGKTMLAKAAA 136
+L S DK G +++ G GK+ + A
Sbjct: 17 LLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.1 bits (59), Expect = 3.9
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 118 VLLVGPPGTGKTMLAKAAATETK 140
+ L G G+GK+++A A +++
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSD 69
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.6 bits (57), Expect = 4.1
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+L++G G GKT + T T+ + K ++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQVGE----VVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQM 208
++ S D R + +
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSE 94
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 26.5 bits (57), Expect = 4.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 122 GPPGTGKTMLAKAAATETKSNFFN 145
GP +GK+ +AK A + + +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.5 bits (58), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSN 142
L+V PP GKTML + A N
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYN 70
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 5.2
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIR 164
+ + G +GKT LA + + ++ + +++
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHT 71
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 5.8
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLI 163
V L G G GKT L + + + + Y + K+I
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMI 81
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.4 bits (58), Expect = 5.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNIT 147
LVGP G+GK+ +A + +
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLL 72
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.1 bits (56), Expect = 6.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 118 VLLVGPPGTGKTMLAKA 134
V+ VG G+GKT L
Sbjct: 3 VVFVGTAGSGKTTLTGE 19
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 25.8 bits (55), Expect = 6.5
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 6/125 (4%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLFLLAKELAPSI 177
+ LVG +GKT F T+ ++ + +
Sbjct: 5 LTLVGLQYSGKTTFVNVI---ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 178 VFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLDE 237
++ S D + K E + + + +++ DL
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEKIE-ASKNELHNLLDKPQLQGIPVLVLGNK--RDLPG 118
Query: 238 AFRRR 242
A +
Sbjct: 119 ALDEK 123
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 26.3 bits (56), Expect = 6.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 119 LLVGPPGTGKTMLAKA 134
L++G G+GK+ L A
Sbjct: 27 LIIGQNGSGKSSLLDA 42
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 25.7 bits (55), Expect = 7.0
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEK 161
+ ++G +GK+ L T + S + D +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQT 51
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.0 bits (57), Expect = 7.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNIT 147
V GP G GKT L K +T K I
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 26.2 bits (56), Expect = 7.4
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 118 VLLVGPPGTGKT--MLAKAA 135
L++ G+GKT + K A
Sbjct: 17 CLVLAGAGSGKTRVITNKIA 36
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 25.8 bits (55), Expect = 7.5
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWY 156
V+++G G GKT L + F N +T+ + +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFL 40
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 25.9 bits (56), Expect = 7.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 118 VLLVGPPGTGKTMLAKAAA 136
+ L G +GK+ LA
Sbjct: 27 IWLTGLSASGKSTLAVELE 45
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 26.2 bits (56), Expect = 7.9
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 331 IPDKELDKAIVQADFDEAVRNCPKTVRPEDAEK 363
+ +EL+K + + + ++N P T PE
Sbjct: 319 VSSEELEKWVEKGSRAKHLKNTPGTFTPEKIRN 351
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.8 bits (56), Expect = 8.0
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 73 LKAETNVKWADIAGLDDAKDLLYEAIVLPSIIPAYFDKLRRPWKG--VLLVGPPGTGKTM 130
L + + + A +D +++ Y+ + S + ++ + G G GK+
Sbjct: 53 LIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSS 112
Query: 131 LAKAAA 136
L A +
Sbjct: 113 LLNAIS 118
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.4 bits (54), Expect = 8.1
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRL 165
+L+VG GKT + K T T+ K I
Sbjct: 3 ILMVGLDAAGKTTILYKL----KLGEIVTTIPTIGFNVETVEYKNISF 46
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 8.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 120 LVGPPGTGKTMLAKAAATETKSNFFNITSST 150
+ G PG GK+ A + + +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 86
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 8.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLLF 167
+L++G G GKT + + T T+ S K ++L
Sbjct: 20 ILILGLDGAGKTTILYR----LQIGEVVTTKPTIGFNVETLSYKNLKLNV 65
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.4 bits (54), Expect = 8.7
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 102 SIIPAYFDKLRRPWKGVLLVGPPGTGKTML 131
S + + ++ K ++ +G GKT L
Sbjct: 1 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTL 29
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 25.7 bits (55), Expect = 9.2
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 2/138 (1%)
Query: 118 VLLVGPPGTGKTMLAKAAATETKSNF-FNITSSTLTSKWYGDSEKLIRLLFLLAKELAPS 176
+LL+G +GK+ + K ++ T T + + +
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64
Query: 177 IVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLILAATNFPWDLD 236
V + + + M S+ N I+ N +
Sbjct: 65 GVTAIIF-CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 123
Query: 237 EAFRRRLEKRIYVPIPDQ 254
E ++ Y
Sbjct: 124 EKIKKSPLTICYPEYAGS 141
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter
jejuni [TaxId: 197]}
Length = 286
Score = 25.6 bits (55), Expect = 9.4
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 44 VNEMYEAILKKLKLDPEEKKLARNILSEVLKAETNVKWADIAGL 87
+ +M E +LK +++ P + V +A +N++ +A +
Sbjct: 3 IGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAEI 46
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 9.9
Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 10/153 (6%)
Query: 116 KGVLLVGPPGTGKT----MLAKAAATETKSNFFNITSSTLTSKWYGDSEKLIRLL----- 166
+ +L+ G GTGK+ LA + + SK+ D + ++
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTK 110
Query: 167 -FLLAKELAPSIVFFDEIDSMCSHRSTSTDVTRRMKSELLCQMDGLASVSNEDPNKSVLI 225
+ E+ + S+ T LL + P+ L
Sbjct: 111 GWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMRELF 170
Query: 226 LAATNFPWDLDEAFRRRLEKRIYVPIPDQATRV 258
T +D F ++A++
Sbjct: 171 HWTTIATFDDLRGFLEGTLAESLFAGSNEASKA 203
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,393,558
Number of extensions: 65278
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 146
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)