BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6717
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 56/67 (83%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YEVLGV + + ED+KKAYRKLAL+WHPDKNP+N EEA+++F+L+ +AYEVLS+
Sbjct: 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 61 ERAFYDK 67
+R+ YD+
Sbjct: 68 KRSLYDR 74
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YEVL VP + E +KKAYRKLALKWHPDKNP N EEA+ +F+ + +AYEVLS+
Sbjct: 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 61 ERAFYDKH 68
+R YD++
Sbjct: 68 KRDIYDRY 75
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 54/68 (79%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YE+L VP + + +D+KKAYR+ AL+WHPDKNP+N E A+++F+ + +AYEVLS+ H
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 61 ERAFYDKH 68
+R YD++
Sbjct: 61 KREIYDRY 68
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHER 62
+Y+VLGV N E+LKKAYRKLALK+HPDKNPN E+F+ I QAYEVLS+ +R
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE----GEKFKQISQAYEVLSDAKKR 62
Query: 63 AFYDK 67
YDK
Sbjct: 63 ELYDK 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y+VLGV + +D +LKKAYRK+ALK+HPDKNP+ EQF+ I QAYEVLS+ +R
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEKKRQ 65
Query: 64 FYDK 67
YD+
Sbjct: 66 IYDQ 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LGV +DEDLKKAYR+LALK+HPDK N+ A E F+ I AY VLSNP +R
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDK--NHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 64 FYDK 67
YD+
Sbjct: 67 QYDQ 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y VLG+ N +D+KK+YRKLALK+HPDKNP+N EA ++F+ I A+ +L++ +R
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNI 78
Query: 65 YDKHKDVFL 73
YDK+ + L
Sbjct: 79 YDKYGSLGL 87
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LGV + +++KAY++LA+K+HPD+N + +EA+ +F+ I++AYEVL++ +RA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 64 FYDKHKDVFLRQ 75
YD++ Q
Sbjct: 64 AYDQYGHAAFEQ 75
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LGV + +++KAY++LA+K+HPD+N + +EA+ +F+ I++AYEVL++ +RA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 64 FYDKHKDVFLRQ 75
YD++ Q
Sbjct: 64 AYDQYGHAAFEQ 75
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LGV + +++KAY++LA+K+HPD+N + +EA+ +F+ I++AYEVL++ +RA
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 64 FYDKHKDVFLRQ 75
YD++ Q
Sbjct: 64 AYDQYGHAAFEQ 75
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKN--PNNLEEAKEQFQLIQQAYEVLSNPHE 61
+Y+ LG+ +DE++K+AYR+ AL++HPDKN P A+E+F+ I +AY+VLS+P +
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSDPRK 60
Query: 62 RAFYDKHKDVFLR 74
R +D++ + L+
Sbjct: 61 REIFDRYGEEGLK 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGV + N+++LKK YRK ALK+HPDK + E+ KE I +A+E+L++P +R
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKE----ISEAFEILNDPQKREI 66
Query: 65 YDKH 68
YD++
Sbjct: 67 YDQY 70
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y VLGV + D+KKAY+KLA +WHPDKN + A+++F I +AYE+LSN +R
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTN 77
Query: 65 YDKH 68
YD +
Sbjct: 78 YDHY 81
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y++LGVP N + +++KKAY +LA K+HPD N ++ +AKE+F + +AYEVLS+ +R
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 64 FYDKH 68
YD +
Sbjct: 68 QYDAY 72
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y++LGVP + ++ +KKA+ KLA+K+HPDKN + EAK F+ I +AYE LS+ + R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAK--FREIAEAYETLSDANRRK 66
Query: 64 FYD 66
YD
Sbjct: 67 EYD 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y +LGV + ++++A++KLALK HPDKNPNN A F I +AYEVL + R
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 65 YDKHKD 70
YDK+ +
Sbjct: 64 YDKYGE 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y +LGV + ++++A++KLALK HPDKNPNN A F I +AYEVL + R
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 65 YDKHKD 70
YDK+ +
Sbjct: 83 YDKYGE 88
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPD--KNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+Y++LGV N +++ KAYRKLAL+WHPD +N ++A+++F I A EVLS+P
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEX 443
Query: 62 RAFYD 66
R +D
Sbjct: 444 RKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPD--KNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+Y++LGV N +++ KAYRKLAL+WHPD +N ++A+++F I A EVLS+P
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 62 RAFYD 66
R +D
Sbjct: 444 RKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGVP +K AY + +HPD+N + EA E+F I QAY VL + R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRK 78
Query: 65 YDK 67
YD+
Sbjct: 79 YDR 81
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPD--KNPNNLEEAKEQFQLIQQAYEVLSN 58
+K +Y ++GV + + +K AYR+LA K+HPD K P+ A+ +F+ + +A+EVLS+
Sbjct: 4 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVLSD 59
Query: 59 PHERAFYDK 67
RA YD+
Sbjct: 60 EQRRAEYDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
+K +Y +LGV + + +K AYR+LA K+HPD + N EAK F+ + +A+EVL +
Sbjct: 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAK--FKDLAEAWEVLKDEQ 84
Query: 61 ERAFYDK 67
RA YD+
Sbjct: 85 RRAEYDQ 91
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKN-----PNNLEEAKEQFQLIQQAYEVLSNP 59
Y +LG + N DLK+ Y+KL L +HPDK +EE ++F I QA+++L N
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 60 HERAFYD 66
+ YD
Sbjct: 79 ETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKN-----PNNLEEAKEQFQLIQQAYEVLSNP 59
Y +LG + N DLK+ Y+KL L +HPDK +EE ++F I QA+++L N
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 60 HERAFYDKHK 69
+ YD +
Sbjct: 73 ETKREYDLQR 82
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y +LG + E + ++ AL+ HPDK+P N +A E FQ +Q+A E+L+N RA
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRA 80
Query: 64 FYD 66
YD
Sbjct: 81 RYD 83
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 20 KKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQDY 77
KK R+L LKWHPDKNP N + A E F+ +Q L ++AF D++ D R+ +
Sbjct: 34 KKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADRASRRTF 88
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 12 LNVNDED-----LKKAYRKLALKWHPDKNPNNLEE--AKEQFQLIQQAYEVLSNPHERAF 64
L VN E+ L KAYR LA K HPD+ N E+ A+E+F++I AYE L + +
Sbjct: 21 LEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTN 80
Query: 65 YDKHKD 70
YD + D
Sbjct: 81 YDYYLD 86
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDK 34
K +++LGV + +++ KAYRKLA+ HPDK
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 10 VPL-NVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFY 65
+P+ ++ L+K YR+L + HPD ++ EQ + QAY L +P R+ Y
Sbjct: 25 LPIWTIDQSRLRKEYRQLQAQHHPDMA----QQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 10 VPL-NVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFY 65
+P+ ++ L+K YR+L + HPD ++ EQ + QAY L +P R+ Y
Sbjct: 17 LPIWTIDQSRLRKEYRQLQAQHHPDMA----QQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 402
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKEN 327
E+ ++C C++ FKT F++H K HK+N
Sbjct: 289 EAKGIYCPFCSRWFKTSSVFESHLVGKIHKKN 320
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 14 VNDEDLKKAYRKLALKWHPDKNPNNLEE--AKEQFQLIQQAYEVLSNPHERAFY 65
V E +KK YRK L HPDK E AK F + A+ N ++ Y
Sbjct: 61 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 14 VNDEDLKKAYRKLALKWHPDKNPNNLEE--AKEQFQLIQQAYEVLSNPHERAFY 65
V E +KK YRK L HPDK E AK F + A+ N ++ Y
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 173 RRVLRLIE-KENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKK 220
R +L L+E K +++ DKA ++Y D K L + + +K + Q L ++
Sbjct: 317 RALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQ 365
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 173 RRVLRLIE-KENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKK 220
R +L L+E K +++ DKA ++Y D K L + + +K + Q L ++
Sbjct: 317 RALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQ 365
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 148 AFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRI 186
+FW + S L F MA + R+ +L+ +ENKR+
Sbjct: 152 SFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRV 190
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 148 AFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRI 186
+FW + S L F MA + R+ +L+ +ENKR+
Sbjct: 151 SFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRV 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,782,159
Number of Sequences: 62578
Number of extensions: 441448
Number of successful extensions: 1303
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 92
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)