Query psy6717
Match_columns 373
No_of_seqs 359 out of 2407
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:37:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717|consensus 100.0 9.3E-75 2E-79 569.0 26.9 317 1-339 7-332 (508)
2 COG5269 ZUO1 Ribosome-associat 100.0 9.3E-36 2E-40 276.4 17.0 195 2-221 43-241 (379)
3 COG0484 DnaJ DnaJ-class molecu 99.9 3.2E-24 6.9E-29 211.1 9.8 72 2-74 4-75 (371)
4 KOG0713|consensus 99.9 8.3E-23 1.8E-27 196.7 8.9 74 1-75 15-88 (336)
5 PRK14288 chaperone protein Dna 99.8 1.1E-19 2.5E-24 181.6 9.3 71 2-73 3-73 (369)
6 KOG0712|consensus 99.8 1.9E-19 4.2E-24 175.2 8.1 71 2-76 4-74 (337)
7 PRK14286 chaperone protein Dna 99.8 4.5E-19 9.7E-24 177.6 9.9 72 2-74 4-75 (372)
8 PRK14296 chaperone protein Dna 99.8 4.1E-19 8.9E-24 177.8 9.4 71 2-74 4-74 (372)
9 PRK14285 chaperone protein Dna 99.8 9.7E-19 2.1E-23 174.7 10.0 72 2-74 3-74 (365)
10 PRK14287 chaperone protein Dna 99.7 2.4E-18 5.3E-23 172.2 9.3 70 2-73 4-73 (371)
11 PRK14276 chaperone protein Dna 99.7 3E-18 6.4E-23 172.1 9.2 72 2-75 4-75 (380)
12 PRK14294 chaperone protein Dna 99.7 3.5E-18 7.7E-23 170.8 9.2 72 2-74 4-75 (366)
13 PRK14297 chaperone protein Dna 99.7 4.9E-18 1.1E-22 170.6 9.9 72 2-74 4-75 (380)
14 PRK14278 chaperone protein Dna 99.7 4.3E-18 9.4E-23 170.8 9.4 68 2-71 3-70 (378)
15 PRK14301 chaperone protein Dna 99.7 7.2E-18 1.6E-22 168.9 9.9 72 2-74 4-75 (373)
16 PRK14279 chaperone protein Dna 99.7 3.9E-18 8.4E-23 171.9 7.8 69 2-71 9-77 (392)
17 PTZ00037 DnaJ_C chaperone prot 99.7 3.9E-18 8.4E-23 172.9 6.5 68 2-74 28-95 (421)
18 PRK14299 chaperone protein Dna 99.7 1.7E-17 3.7E-22 161.1 10.3 70 2-73 4-73 (291)
19 PRK14281 chaperone protein Dna 99.7 1.3E-17 2.8E-22 168.3 9.6 72 2-74 3-74 (397)
20 PRK14298 chaperone protein Dna 99.7 9.2E-18 2E-22 168.3 8.1 71 2-74 5-75 (377)
21 PRK14282 chaperone protein Dna 99.7 8.5E-18 1.9E-22 168.2 7.6 71 2-72 4-74 (369)
22 PRK14277 chaperone protein Dna 99.7 1.5E-17 3.2E-22 167.4 9.3 72 2-74 5-76 (386)
23 PRK14290 chaperone protein Dna 99.7 2.4E-17 5.2E-22 164.8 9.9 71 2-72 3-73 (365)
24 PRK14291 chaperone protein Dna 99.7 2.1E-17 4.5E-22 166.1 9.5 70 2-73 3-72 (382)
25 PRK14280 chaperone protein Dna 99.7 2.1E-17 4.5E-22 165.8 9.0 71 2-74 4-74 (376)
26 PRK14295 chaperone protein Dna 99.7 2.7E-17 5.8E-22 165.6 9.3 72 2-74 9-84 (389)
27 PTZ00341 Ring-infected erythro 99.7 8.6E-18 1.9E-22 179.6 6.0 72 2-75 573-644 (1136)
28 PRK10767 chaperone protein Dna 99.7 2.9E-17 6.3E-22 164.5 9.3 71 2-73 4-74 (371)
29 KOG0716|consensus 99.7 1.6E-17 3.6E-22 155.7 6.3 71 3-74 32-102 (279)
30 PF00226 DnaJ: DnaJ domain; I 99.7 2.9E-17 6.4E-22 123.6 6.0 64 3-66 1-64 (64)
31 PRK14283 chaperone protein Dna 99.7 2.7E-17 5.9E-22 165.1 7.0 71 2-74 5-75 (378)
32 TIGR02349 DnaJ_bact chaperone 99.7 6E-17 1.3E-21 161.3 9.3 69 3-73 1-69 (354)
33 PRK14300 chaperone protein Dna 99.7 8.5E-17 1.8E-21 161.2 9.2 70 2-73 3-72 (372)
34 KOG0719|consensus 99.7 6.3E-17 1.4E-21 148.6 7.3 123 2-151 14-137 (264)
35 PRK14284 chaperone protein Dna 99.7 7.2E-17 1.6E-21 162.7 7.6 71 2-73 1-71 (391)
36 KOG0691|consensus 99.7 6.8E-17 1.5E-21 155.8 6.9 69 2-71 5-73 (296)
37 PRK14289 chaperone protein Dna 99.7 1.5E-16 3.3E-21 160.1 9.4 71 2-73 5-75 (386)
38 PRK10266 curved DNA-binding pr 99.7 1.9E-16 4.1E-21 154.8 9.3 68 1-70 3-70 (306)
39 KOG0718|consensus 99.6 1.1E-16 2.3E-21 159.2 5.9 73 2-74 9-83 (546)
40 PRK14293 chaperone protein Dna 99.6 2.9E-16 6.3E-21 157.5 8.7 70 2-73 3-72 (374)
41 PRK14292 chaperone protein Dna 99.6 1.9E-16 4.1E-21 158.6 7.3 69 1-71 1-69 (371)
42 KOG0715|consensus 99.6 5.8E-16 1.3E-20 149.9 7.2 67 3-71 44-110 (288)
43 smart00271 DnaJ DnaJ molecular 99.6 2E-15 4.2E-20 112.0 7.3 59 2-60 1-59 (60)
44 cd06257 DnaJ DnaJ domain or J- 99.6 6.9E-15 1.5E-19 107.0 7.0 55 3-58 1-55 (55)
45 KOG0721|consensus 99.5 6.7E-15 1.5E-19 134.1 6.8 73 2-75 99-171 (230)
46 COG2214 CbpA DnaJ-class molecu 99.5 2.2E-14 4.7E-19 130.4 7.1 69 1-69 5-73 (237)
47 KOG0624|consensus 99.5 2.8E-14 6E-19 138.3 7.6 68 2-69 394-463 (504)
48 TIGR03835 termin_org_DnaJ term 99.5 1.7E-14 3.7E-19 151.6 6.1 70 2-73 2-71 (871)
49 PHA03102 Small T antigen; Revi 99.5 3.4E-14 7.3E-19 125.0 5.3 64 3-71 6-71 (153)
50 PRK01356 hscB co-chaperone Hsc 99.5 7.4E-14 1.6E-18 125.0 7.3 69 1-69 1-73 (166)
51 PRK05014 hscB co-chaperone Hsc 99.4 2.9E-13 6.3E-18 121.8 7.5 67 2-68 1-73 (171)
52 KOG0550|consensus 99.4 2.1E-13 4.6E-18 134.7 5.8 68 2-69 373-440 (486)
53 KOG0714|consensus 99.3 1E-12 2.2E-17 125.0 6.3 75 1-75 2-76 (306)
54 KOG0720|consensus 99.3 1E-12 2.2E-17 131.1 5.7 66 2-69 235-300 (490)
55 PRK03578 hscB co-chaperone Hsc 99.3 2.5E-12 5.4E-17 116.2 7.5 67 2-68 6-78 (176)
56 PRK00294 hscB co-chaperone Hsc 99.3 3.5E-12 7.6E-17 114.9 7.5 68 2-69 4-77 (173)
57 KOG0722|consensus 99.3 2.5E-12 5.5E-17 119.7 3.4 65 2-68 33-97 (329)
58 KOG2785|consensus 99.2 3.1E-12 6.6E-17 125.1 2.3 82 245-332 19-101 (390)
59 PTZ00100 DnaJ chaperone protei 99.1 7.1E-11 1.5E-15 99.1 5.9 50 3-57 66-115 (116)
60 PRK09430 djlA Dna-J like membr 99.1 6.1E-11 1.3E-15 113.9 5.2 57 2-58 200-262 (267)
61 PRK01773 hscB co-chaperone Hsc 99.1 1.7E-10 3.8E-15 103.9 7.5 68 1-68 1-74 (173)
62 COG5407 SEC63 Preprotein trans 99.1 1.9E-10 4.2E-15 114.5 7.1 71 3-73 99-173 (610)
63 PHA02624 large T antigen; Prov 99.0 2.8E-10 6.1E-15 118.8 5.7 59 2-65 11-71 (647)
64 KOG1150|consensus 99.0 7.2E-10 1.6E-14 100.1 5.3 64 3-66 54-117 (250)
65 TIGR00714 hscB Fe-S protein as 98.7 1.8E-08 3.9E-13 89.5 6.8 57 13-69 2-62 (157)
66 KOG0724|consensus 98.6 4.4E-08 9.6E-13 96.9 6.6 177 13-214 3-187 (335)
67 PF12171 zf-C2H2_jaz: Zinc-fin 98.6 2.5E-08 5.5E-13 62.4 1.6 26 300-325 2-27 (27)
68 smart00451 ZnF_U1 U1-like zinc 98.3 3.4E-07 7.3E-12 60.4 2.2 32 299-330 3-34 (35)
69 PF12874 zf-met: Zinc-finger o 98.2 8.8E-07 1.9E-11 54.1 1.7 25 300-324 1-25 (25)
70 KOG0568|consensus 97.9 9.7E-06 2.1E-10 75.2 4.9 54 3-58 48-102 (342)
71 KOG1789|consensus 97.9 1E-05 2.2E-10 88.0 5.6 51 3-57 1282-1336(2235)
72 KOG3408|consensus 97.7 1.6E-05 3.6E-10 66.5 2.2 39 296-334 54-92 (129)
73 KOG0723|consensus 97.7 7.3E-05 1.6E-09 61.5 5.6 49 6-59 60-108 (112)
74 PF06220 zf-U1: U1 zinc finger 97.1 0.00035 7.5E-09 47.4 2.5 32 299-330 3-36 (38)
75 COG5112 UFD2 U1-like Zn-finger 96.9 0.00054 1.2E-08 56.2 2.2 39 296-334 52-90 (126)
76 KOG3192|consensus 96.8 0.0015 3.3E-08 57.4 4.3 67 2-68 8-80 (168)
77 KOG0717|consensus 96.5 0.008 1.7E-07 61.2 7.7 115 144-263 134-249 (508)
78 COG5188 PRP9 Splicing factor 3 96.4 0.0021 4.6E-08 63.1 3.1 38 296-333 235-272 (470)
79 KOG4727|consensus 96.4 0.0021 4.7E-08 57.1 2.3 36 296-331 72-107 (193)
80 PLN02748 tRNA dimethylallyltra 95.6 0.0088 1.9E-07 62.0 3.0 38 297-334 416-454 (468)
81 KOG0431|consensus 95.5 0.017 3.8E-07 59.7 4.8 45 12-56 398-448 (453)
82 PF00096 zf-C2H2: Zinc finger, 95.4 0.0086 1.9E-07 35.4 1.4 22 300-321 1-22 (23)
83 PF13894 zf-C2H2_4: C2H2-type 94.1 0.027 5.9E-07 32.9 1.3 22 300-321 1-22 (24)
84 COG1076 DjlA DnaJ-domain-conta 93.9 0.041 8.8E-07 49.7 2.5 66 3-68 2-73 (174)
85 PF13912 zf-C2H2_6: C2H2-type 93.4 0.04 8.6E-07 33.8 1.2 22 300-321 2-23 (27)
86 KOG3454|consensus 92.8 0.14 3E-06 45.5 4.0 38 299-336 3-42 (165)
87 KOG3032|consensus 92.7 0.091 2E-06 49.1 2.9 38 296-334 32-69 (264)
88 PF12756 zf-C2H2_2: C2H2 type 92.3 0.041 8.9E-07 43.7 0.2 31 299-329 50-80 (100)
89 smart00586 ZnF_DBF Zinc finger 91.9 0.12 2.5E-06 37.0 2.1 27 299-328 5-31 (49)
90 PF07535 zf-DBF: DBF zinc fing 91.8 0.095 2.1E-06 37.5 1.5 26 300-328 6-31 (49)
91 smart00355 ZnF_C2H2 zinc finge 91.1 0.15 3.3E-06 29.9 1.7 20 301-320 2-21 (26)
92 COG1076 DjlA DnaJ-domain-conta 90.5 0.12 2.7E-06 46.5 1.2 33 3-35 114-146 (174)
93 PF03656 Pam16: Pam16; InterP 90.4 0.56 1.2E-05 40.3 5.2 50 5-59 61-110 (127)
94 KOG2837|consensus 89.4 0.15 3.1E-06 48.9 0.9 32 300-331 26-57 (309)
95 KOG0227|consensus 87.8 0.45 9.7E-06 43.4 2.8 37 298-334 52-88 (222)
96 PHA00616 hypothetical protein 86.2 0.43 9.3E-06 33.4 1.4 22 300-321 2-23 (44)
97 PHA02768 hypothetical protein; 85.4 0.46 1E-05 34.8 1.3 24 300-325 6-29 (55)
98 KOG0150|consensus 84.0 1.1 2.5E-05 43.7 3.7 35 298-332 9-44 (336)
99 COG5246 PRP11 Splicing factor 83.9 0.74 1.6E-05 41.7 2.2 35 297-331 51-85 (222)
100 PF13446 RPT: A repeated domai 83.4 3 6.5E-05 30.8 5.1 26 3-28 6-31 (62)
101 PF04959 ARS2: Arsenite-resist 82.7 1.2 2.6E-05 41.6 3.3 36 299-335 77-112 (214)
102 PF13913 zf-C2HC_2: zinc-finge 79.9 1 2.2E-05 27.5 1.2 20 300-320 3-22 (25)
103 smart00734 ZnF_Rad18 Rad18-lik 77.8 1.3 2.9E-05 27.3 1.2 20 301-321 3-22 (26)
104 PF03194 LUC7: LUC7 N_terminus 77.2 14 0.00031 35.4 8.7 29 298-326 189-220 (254)
105 KOG1029|consensus 76.5 41 0.00089 37.2 12.5 13 176-188 333-345 (1118)
106 PTZ00448 hypothetical protein; 72.8 1.4 3.1E-05 44.1 0.7 34 243-277 328-361 (373)
107 KOG0388|consensus 69.2 14 0.00029 40.6 6.9 87 145-235 360-446 (1185)
108 KOG4722|consensus 66.9 1.4E+02 0.003 30.9 13.1 32 300-331 494-525 (672)
109 COG5136 U1 snRNP-specific prot 61.8 9.6 0.00021 34.0 3.5 33 300-332 4-38 (188)
110 KOG2384|consensus 60.1 3.2 7E-05 38.2 0.3 35 296-331 81-115 (223)
111 KOG4848|consensus 59.2 50 0.0011 30.4 7.7 19 205-223 181-199 (225)
112 COG4049 Uncharacterized protei 59.1 4.7 0.0001 29.7 0.9 21 300-320 18-38 (65)
113 KOG1029|consensus 58.0 1.9E+02 0.0042 32.3 12.9 8 249-256 427-434 (1118)
114 KOG2482|consensus 57.2 3.6 7.7E-05 40.9 0.1 29 298-326 194-222 (423)
115 PF12269 zf-CpG_bind_C: CpG bi 56.1 30 0.00066 32.9 6.0 18 298-315 83-100 (236)
116 PF13465 zf-H2C2_2: Zinc-finge 54.4 4.4 9.4E-05 24.7 0.1 12 300-311 15-26 (26)
117 PF14687 DUF4460: Domain of un 51.3 26 0.00057 29.4 4.4 48 12-59 4-54 (112)
118 COG5067 DBF4 Protein kinase es 46.1 9 0.0002 38.8 0.9 27 298-327 421-447 (468)
119 PHA00732 hypothetical protein 45.7 11 0.00025 29.5 1.2 22 300-321 2-23 (79)
120 PF13892 DBINO: DNA-binding do 45.1 1.3E+02 0.0027 26.4 7.7 55 173-228 46-100 (139)
121 PF04423 Rad50_zn_hook: Rad50 44.5 19 0.00041 25.8 2.2 14 301-314 22-35 (54)
122 KOG3623|consensus 42.9 6.7 0.00015 42.7 -0.6 28 299-326 309-336 (1007)
123 PF05605 zf-Di19: Drought indu 42.7 17 0.00038 26.0 1.8 23 300-323 3-25 (54)
124 PF12756 zf-C2H2_2: C2H2 type 42.0 8.5 0.00018 30.1 0.0 26 302-328 2-27 (100)
125 PTZ00448 hypothetical protein; 41.7 18 0.00038 36.6 2.1 37 299-335 314-350 (373)
126 KOG3576|consensus 40.9 12 0.00027 34.8 0.9 26 296-321 114-139 (267)
127 PF11833 DUF3353: Protein of u 40.7 41 0.00088 31.0 4.3 38 11-57 1-38 (194)
128 PTZ00266 NIMA-related protein 39.1 3.9E+02 0.0084 31.0 12.4 10 302-311 563-572 (1021)
129 KOG2893|consensus 38.8 11 0.00025 35.7 0.3 27 298-324 9-35 (341)
130 KOG0163|consensus 38.8 3.2E+02 0.007 30.6 11.0 9 13-21 707-715 (1259)
131 PTZ00266 NIMA-related protein 38.0 3.4E+02 0.0073 31.5 11.7 7 176-182 437-443 (1021)
132 PF08790 zf-LYAR: LYAR-type C2 37.9 6.8 0.00015 24.8 -0.9 19 300-319 1-19 (28)
133 PHA00733 hypothetical protein 36.3 20 0.00044 30.7 1.4 22 300-321 100-121 (128)
134 PF04988 AKAP95: A-kinase anch 35.6 27 0.00058 31.3 2.1 32 300-331 1-32 (165)
135 PRK00247 putative inner membra 35.1 2.5E+02 0.0055 29.1 9.4 14 150-163 261-274 (429)
136 PF14968 CCDC84: Coiled coil p 34.8 24 0.00053 35.3 1.9 29 301-332 1-29 (336)
137 PF04780 DUF629: Protein of un 32.3 25 0.00054 36.7 1.6 35 300-334 58-92 (466)
138 KOG1994|consensus 32.2 22 0.00048 33.6 1.1 24 297-320 237-260 (268)
139 PF02892 zf-BED: BED zinc fing 31.8 22 0.00047 24.1 0.8 21 300-320 17-41 (45)
140 PF10147 CR6_interact: Growth 31.8 2.7E+02 0.0058 26.2 8.2 20 206-225 171-190 (217)
141 PTZ00121 MAEBL; Provisional 29.5 9.2E+02 0.02 29.4 13.1 12 151-162 1071-1082(2084)
142 PF12907 zf-met2: Zinc-binding 29.1 32 0.00069 23.6 1.2 26 300-325 2-30 (40)
143 PF12855 Ecl1: Life-span regul 28.4 16 0.00036 25.4 -0.3 9 301-309 8-16 (43)
144 PF09986 DUF2225: Uncharacteri 28.0 11 0.00023 35.2 -1.8 23 300-322 6-28 (214)
145 KOG2891|consensus 27.9 2.7E+02 0.0058 27.4 7.6 17 93-109 211-227 (445)
146 PF11931 DUF3449: Domain of un 27.3 21 0.00045 33.0 0.0 34 298-331 100-134 (196)
147 KOG2370|consensus 26.7 3.2E+02 0.0069 28.8 8.2 70 170-239 50-159 (623)
148 KOG2505|consensus 26.3 64 0.0014 34.0 3.3 38 296-333 63-100 (591)
149 PHA00733 hypothetical protein 25.0 42 0.00092 28.7 1.5 23 299-321 73-95 (128)
150 KOG3993|consensus 24.8 35 0.00075 35.1 1.1 33 297-329 354-386 (500)
151 cd01396 MeCP2_MBD MeCP2, MBD1, 24.6 37 0.00079 26.5 1.0 26 297-322 26-51 (77)
152 KOG0796|consensus 23.2 7.6E+02 0.016 24.6 11.3 29 298-326 185-216 (319)
153 COG5552 Uncharacterized conser 23.1 3.6E+02 0.0077 21.1 6.0 34 2-35 3-40 (88)
154 KOG0163|consensus 22.9 7.5E+02 0.016 28.0 10.4 13 195-207 926-938 (1259)
155 KOG2462|consensus 22.7 37 0.00081 32.9 0.8 20 300-319 216-235 (279)
156 PF06936 Selenoprotein_S: Sele 22.3 6.2E+02 0.013 23.3 8.7 7 206-212 71-77 (190)
157 smart00614 ZnF_BED BED zinc fi 21.8 38 0.00083 23.8 0.5 22 300-321 19-45 (50)
158 KOG2785|consensus 21.7 63 0.0014 32.8 2.2 36 299-334 3-38 (390)
159 PF14968 CCDC84: Coiled coil p 21.7 53 0.0011 32.9 1.7 34 298-331 57-96 (336)
160 cd00122 MBD MeCP2, MBD1, MBD2, 21.0 54 0.0012 24.2 1.2 26 297-322 25-50 (62)
161 KOG4661|consensus 20.9 7.8E+02 0.017 26.8 9.9 23 7-29 410-432 (940)
162 PF07709 SRR: Seven Residue Re 20.8 79 0.0017 16.4 1.5 13 45-57 2-14 (14)
163 smart00391 MBD Methyl-CpG bind 20.5 53 0.0011 25.6 1.1 26 297-322 28-53 (77)
164 PF05443 ROS_MUCR: ROS/MUCR tr 20.4 49 0.0011 28.6 1.0 23 297-322 70-92 (132)
165 KOG3608|consensus 20.1 57 0.0012 32.9 1.5 24 300-324 353-376 (467)
No 1
>KOG0717|consensus
Probab=100.00 E-value=9.3e-75 Score=568.98 Aligned_cols=317 Identities=47% Similarity=0.810 Sum_probs=263.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcCCCC--
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQDYD-- 78 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~~~~-- 78 (373)
|+|||+||||..+|++.+||++||+|||+|||||||+..++|++.|+.|+.||+|||||+.|+|||+|+.+||.|..+
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s~~ 86 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNSDT 86 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCcccCCccccCCCCCCCCCCCcchhHhhHHHHHHHHHHHhhhhhcc-CCCCCCCCCCCChhHHHHHHHHHhhcCcccc
Q psy6717 79 ESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEE-MDIPNFGNSTSSYYNTVHNFYAFWQSFSTKK 157 (373)
Q Consensus 79 ~~~~~~~~~~f~~~~~~g~~~~~~gf~~~~~~~F~~~~~ee~~~~~~~-~~~P~fG~~~s~~~~~v~~FY~~W~~F~t~r 157 (373)
.....++++||+++||.||+++..|||.||++||..++.+++.|.... .-+|-||.++|+|+.++ .||.||..|+|.+
T Consensus 87 ~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~K 165 (508)
T KOG0717|consen 87 GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKK 165 (508)
T ss_pred ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHH-HHHHHHHhhhhhh
Confidence 344668899999999999999999999999999999999999997643 48999999999999987 9999999999999
Q ss_pred ccccccccccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Q psy6717 158 TYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQE-KEENALKLKERRRQ 236 (373)
Q Consensus 158 ~F~w~d~~~~~~a~~R~~rR~mekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~~~~~~~~~-~~~~~~k~~~~r~~ 236 (373)
+|+|+|+|++.+..+|..+|+|+++|+++|+.+|++||.+||.||.||+||||||++ .++.+ .+..+.++++.|++
T Consensus 166 sf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~---~l~~k~~E~~r~kqe~~Rk~ 242 (508)
T KOG0717|consen 166 SFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKA---MLELKDAEAYRSKQEESRKQ 242 (508)
T ss_pred hHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 23333 33333366677776
Q ss_pred HHHHHHHHHhhhhh----hhhhhhhhhHHHHHhHHHHHhhhhcCCCCCCCCccCCCCcchhhh-ccCcccccchhhhccC
Q psy6717 237 QMIDRKKEMESMKE----NEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIE-ESSHLFCIACNKLFKT 311 (373)
Q Consensus 237 ~~~~~~~~a~e~~~----~~w~~~~~le~~~~~l~~~~~~ef~~~~~~~~~~~~~~~~~~~~~-~~~~~~C~~C~K~F~s 311 (373)
+.+.++..+..+.+ ..|+.+... +.. . +.+.+... +.++.+ +.+.+||+||+|+|+|
T Consensus 243 ~~~~r~e~~e~r~n~~e~~~~~~~~e~-------ed~-~----e~~~d~~~------e~de~d~~ge~lyC~vCnKsFKs 304 (508)
T KOG0717|consen 243 QLRKRREYAETRKNNGEGSEEALKEEI-------EDE-L----EKSSDDET------ESDEADNEGEVLYCVVCNKSFKS 304 (508)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHH-------Hhh-h----hhccccch------hhhhhhhcCCceEEeeccccccc
Confidence 65544443333332 233322111 110 1 11111100 111222 2333999999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q psy6717 312 EKAFQNHENSKKHKENVAILKEQMLEEE 339 (373)
Q Consensus 312 ~~~~~nH~~SKkH~~~~~~~~~~~~~e~ 339 (373)
++|+.||++||||+++|..|+++|.+|+
T Consensus 305 eKq~kNHEnSKKHkenv~eLrqemEEEe 332 (508)
T KOG0717|consen 305 EKQLKNHENSKKHKENVAELRQEMEEEE 332 (508)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998775
No 2
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-36 Score=276.43 Aligned_cols=195 Identities=30% Similarity=0.432 Sum_probs=165.9
Q ss_pred CCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcCCC
Q psy6717 2 KCHYEVLGVPL---NVNDEDLKKAYRKLALKWHPDKNPN-NLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQDY 77 (373)
Q Consensus 2 ~d~Y~iLgv~~---~as~~eIKkaYrkl~l~~HPDk~~~-~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~~~ 77 (373)
.|+|.+|||+. .|++.+|.+|.++.+++||||+... ..-.+...|+.|+.||+||+|+.+|..||+...
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df------- 115 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF------- 115 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc-------
Confidence 47999999984 7899999999999999999999721 113567899999999999999999999998521
Q ss_pred CCCCcccCCccccCCCCCCCCCCCcchhHhhHHHHHHHHHHHhhhhhccCCCCCCCCCCCChhHHHHHHHHHhhcCcccc
Q psy6717 78 DESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQSFSTKK 157 (373)
Q Consensus 78 ~~~~~~~~~~~f~~~~~~g~~~~~~gf~~~~~~~F~~~~~ee~~~~~~~~~~P~fG~~~s~~~~~v~~FY~~W~~F~t~r 157 (373)
+-.++... ...+..||.+|++||.+.++ |+. .+++|++|.++++... |..||.||++|.|||
T Consensus 116 --~advppp~----------~~t~~~Ffe~w~pvFe~ear----FSk-KqPvPsLg~~dss~ke-Ve~FY~FW~nFdSWR 177 (379)
T COG5269 116 --DADVPPPR----------IYTPDEFFEVWEPVFEREAR----FSK-KQPVPSLGPSDSSLKE-VEEFYEFWSNFDSWR 177 (379)
T ss_pred --ccCCCCcc----------CCCchhHHHHHHHHHHhhhh----ccc-cCCCCCCCCchhHHHH-HHHHHHHHHhccccc
Confidence 11122111 12345799999999998775 664 3499999999999988 799999999999999
Q ss_pred ccccccccccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHH
Q psy6717 158 TYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQ 221 (373)
Q Consensus 158 ~F~w~d~~~~~~a~~R~~rR~mekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~~~~~~~~ 221 (373)
+|..+|+--..+.++|..+|..|+.|+..|++.+...|.||+.||+.|.++||||+-++++..+
T Consensus 178 tFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~ 241 (379)
T COG5269 178 TFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKE 241 (379)
T ss_pred cccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHH
Confidence 9999999989999999999999999999999999999999999999999999999887765443
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.2e-24 Score=211.11 Aligned_cols=72 Identities=50% Similarity=0.871 Sum_probs=68.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+|+.+ ++|.++|++|++||+|||||++|+.||.+|+..+.
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 6999999999999999999999999999999999964 78999999999999999999999999999887654
No 4
>KOG0713|consensus
Probab=99.88 E-value=8.3e-23 Score=196.69 Aligned_cols=74 Identities=53% Similarity=0.879 Sum_probs=70.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcC
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQ 75 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~ 75 (373)
++|||+||||+++|+..+||+|||||||++|||||+++ |.|.+.|+.|+.||+|||||.+|+.||.+|+..|..
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 47999999999999999999999999999999999997 799999999999999999999999999999887753
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=181.63 Aligned_cols=71 Identities=49% Similarity=0.787 Sum_probs=65.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
.|||+||||+++||.++||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|+.||.+|+..+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 6999999999999999999999999999999999854 4688999999999999999999999999886543
No 6
>KOG0712|consensus
Probab=99.78 E-value=1.9e-19 Score=175.19 Aligned_cols=71 Identities=52% Similarity=0.862 Sum_probs=67.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcCC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQD 76 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~~ 76 (373)
+.||+||||+++||..+||+|||+||++||||||++ +.++|+.|+.||+|||||.+|..||.+|+..++++
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 579999999999999999999999999999999986 78999999999999999999999999999888654
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.5e-19 Score=177.57 Aligned_cols=72 Identities=44% Similarity=0.812 Sum_probs=66.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 5999999999999999999999999999999999764 56889999999999999999999999999876554
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.1e-19 Score=177.77 Aligned_cols=71 Identities=35% Similarity=0.600 Sum_probs=66.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+|++ +.|.++|+.|++||+|||||.+|+.||.+|...+.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 599999999999999999999999999999999975 57899999999999999999999999999876554
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=9.7e-19 Score=174.72 Aligned_cols=72 Identities=42% Similarity=0.726 Sum_probs=66.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|..||.+++..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 7999999999999999999999999999999999764 57889999999999999999999999999876543
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.4e-18 Score=172.21 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=65.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||.++||+|||+||++||||+|+. +.+.++|+.|++||+||+||.+|+.||.+|+..+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 599999999999999999999999999999999974 5788999999999999999999999999986544
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3e-18 Score=172.13 Aligned_cols=72 Identities=40% Similarity=0.659 Sum_probs=66.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQ 75 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~ 75 (373)
+|||+||||+++||.++||+|||+||++||||++++ +.+.++|+.|++||+||+||.+|+.||.+|+..+.+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~ 75 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANG 75 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccC
Confidence 599999999999999999999999999999999975 568899999999999999999999999998765543
No 12
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.5e-18 Score=170.80 Aligned_cols=72 Identities=47% Similarity=0.829 Sum_probs=66.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+++.+ +.+.+.|+.|++||+||+||.+|+.||.+|+..+.
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 5999999999999999999999999999999999864 56889999999999999999999999999875443
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4.9e-18 Score=170.58 Aligned_cols=72 Identities=49% Similarity=0.816 Sum_probs=66.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 5999999999999999999999999999999999864 56889999999999999999999999999876543
No 14
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4.3e-18 Score=170.81 Aligned_cols=68 Identities=50% Similarity=0.777 Sum_probs=64.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
+|||+||||+++||.++||+|||+||++||||++++ +.|.++|+.|++||+||+||.+|+.||.+|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999984 67889999999999999999999999998754
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=7.2e-18 Score=168.92 Aligned_cols=72 Identities=46% Similarity=0.805 Sum_probs=66.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 6999999999999999999999999999999999864 56889999999999999999999999999875443
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.9e-18 Score=171.87 Aligned_cols=69 Identities=43% Similarity=0.742 Sum_probs=65.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
+|||+||||+++||..+||+|||+||++||||+++++ +.|.++|+.|++||+|||||.+|+.||.+|..
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 5999999999999999999999999999999999864 57899999999999999999999999999864
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.72 E-value=3.9e-18 Score=172.90 Aligned_cols=68 Identities=46% Similarity=0.731 Sum_probs=62.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||++++ .++|+.|++||+|||||.+|+.||.+|...+.
T Consensus 28 ~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred hhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 589999999999999999999999999999999863 37999999999999999999999999876544
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.7e-17 Score=161.06 Aligned_cols=70 Identities=44% Similarity=0.741 Sum_probs=65.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||..+||+|||+||++||||++++ +.+.++|+.|++||+||+||.+|..||.++...+
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 599999999999999999999999999999999974 5788999999999999999999999999876543
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.3e-17 Score=168.33 Aligned_cols=72 Identities=51% Similarity=0.831 Sum_probs=66.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 6999999999999999999999999999999999764 56889999999999999999999999999876554
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.2e-18 Score=168.33 Aligned_cols=71 Identities=46% Similarity=0.766 Sum_probs=65.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+++. +.+.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 499999999999999999999999999999999975 56889999999999999999999999999875544
No 21
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.5e-18 Score=168.22 Aligned_cols=71 Identities=49% Similarity=0.889 Sum_probs=65.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVF 72 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~ 72 (373)
+|||+||||+++||..+||+|||+||++||||+++.+...|.++|+.|++||+||+||.+|+.||.+|...
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 59999999999999999999999999999999998654568999999999999999999999999987543
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.5e-17 Score=167.42 Aligned_cols=72 Identities=49% Similarity=0.840 Sum_probs=66.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||.++||+|||+||++||||+++.+ +.|.++|+.|++||+||+||.+|..||.+|...+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 5999999999999999999999999999999999864 56889999999999999999999999999876543
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.4e-17 Score=164.77 Aligned_cols=71 Identities=52% Similarity=0.840 Sum_probs=66.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVF 72 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~ 72 (373)
+|||+||||+++||..+||+|||+|+++||||+++.+...|.++|+.|++||+||+||.+|..||.+|...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 69999999999999999999999999999999998765578999999999999999999999999987643
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.1e-17 Score=166.13 Aligned_cols=70 Identities=50% Similarity=0.821 Sum_probs=65.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||.++||+|||+||++||||+|+. +.+.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 599999999999999999999999999999999986 5688999999999999999999999999886544
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.1e-17 Score=165.79 Aligned_cols=71 Identities=46% Similarity=0.706 Sum_probs=65.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+++. +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 599999999999999999999999999999999975 46889999999999999999999999999876544
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.7e-17 Score=165.64 Aligned_cols=72 Identities=44% Similarity=0.737 Sum_probs=65.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhh----chhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDK----HKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~----~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+++.+ +.+.++|+.|++||+||+||.+|+.||. +|...+.
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 3999999999999999999999999999999999764 5688999999999999999999999998 7765443
No 27
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.70 E-value=8.6e-18 Score=179.56 Aligned_cols=72 Identities=28% Similarity=0.517 Sum_probs=66.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQ 75 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~ 75 (373)
++||+||||+++||..+||+|||+||++||||++++. .|..+|+.|.+||+|||||.+|+.||.+|..++.+
T Consensus 573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 5899999999999999999999999999999999874 58889999999999999999999999998765443
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.9e-17 Score=164.53 Aligned_cols=71 Identities=52% Similarity=0.909 Sum_probs=65.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||..+||+|||+||++||||+++.+ +.|.+.|+.|++||+||+||.+|..||.++...+
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 5999999999999999999999999999999999754 5688999999999999999999999999876543
No 29
>KOG0716|consensus
Probab=99.70 E-value=1.6e-17 Score=155.66 Aligned_cols=71 Identities=48% Similarity=0.843 Sum_probs=67.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
++|+||||+++||.++||+|||+|++++|||+++++ ++++.+|+.|+.||.||+||.+|..||..|...+.
T Consensus 32 ~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 32 DLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred HHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 689999999999999999999999999999999988 78999999999999999999999999999876654
No 30
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=2.9e-17 Score=123.65 Aligned_cols=64 Identities=50% Similarity=0.910 Sum_probs=60.5
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhh
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYD 66 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD 66 (373)
|||+||||+++++..+||++|+++++.+|||+++.....+...|..|+.||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987754568899999999999999999999998
No 31
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=165.10 Aligned_cols=71 Identities=45% Similarity=0.696 Sum_probs=66.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
+|||+||||+++||..+||+|||+||++||||+|++ +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 499999999999999999999999999999999975 57899999999999999999999999999876543
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.69 E-value=6e-17 Score=161.28 Aligned_cols=69 Identities=51% Similarity=0.840 Sum_probs=64.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
|||+||||+++||.++||+|||+||++||||+++. +.+.++|+.|++||+||+||.+|..||.++...+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 79999999999999999999999999999999973 5688999999999999999999999999876544
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=8.5e-17 Score=161.18 Aligned_cols=70 Identities=39% Similarity=0.659 Sum_probs=64.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||..+||+|||+|+++||||+++. ..+.++|+.|++||+||+||.+|+.||.+|...+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 799999999999999999999999999999999874 4578899999999999999999999999876544
No 34
>KOG0719|consensus
Probab=99.68 E-value=6.3e-17 Score=148.56 Aligned_cols=123 Identities=37% Similarity=0.626 Sum_probs=91.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcCCCCCC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPN-NLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQDYDES 80 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~-~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~~~~~~ 80 (373)
+|+|+||||.++||..+|++|||+|+|+||||+++. ...+++..|+.|+.||.||||..+|+.||..|. ++ +
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~------id-d 86 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS------ID-D 86 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC------CC-C
Confidence 489999999999999999999999999999999963 225799999999999999999999999998742 11 1
Q ss_pred CcccCCccccCCCCCCCCCCCcchhHhhHHHHHHHHHHHhhhhhccCCCCCCCCCCCChhHHHHHHHHHhh
Q psy6717 81 DSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQ 151 (373)
Q Consensus 81 ~~~~~~~~f~~~~~~g~~~~~~gf~~~~~~~F~~~~~ee~~~~~~~~~~P~fG~~~s~~~~~v~~FY~~W~ 151 (373)
.+ |+-...+-..|+.+|..+..+++.-.. ..|.+|.+...+++..|-.|=+
T Consensus 87 ~~---------------~d~~~~~~e~~~~iyk~VteedIeef~-----a~Y~gSEeEk~Dl~~~Y~k~kG 137 (264)
T KOG0719|consen 87 ES---------------GDIDEDWLEFWRAIYKKVTEEDIEEFE-----ANYQGSEEEKKDLLKLYNKFKG 137 (264)
T ss_pred cc---------------chhhhHHHHHHHHHHhhcccccHHHHH-----HHhcccHHHHHHHHHHHHhcCC
Confidence 11 111223556688888877777765432 2356777777776554444433
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.2e-17 Score=162.71 Aligned_cols=71 Identities=45% Similarity=0.725 Sum_probs=65.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
.|||+||||+++||.++||+|||+||++||||+++++ +.+.++|+.|++||+||+||.+|+.||.+|...+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 4899999999999999999999999999999999864 5688999999999999999999999999987644
No 36
>KOG0691|consensus
Probab=99.67 E-value=6.8e-17 Score=155.76 Aligned_cols=69 Identities=48% Similarity=0.801 Sum_probs=65.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
.|||.||||+++||..+|++|||..+|.|||||||+++ .|.+.|+.|.+||+||+||..|..||..|..
T Consensus 5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-QAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999985 5999999999999999999999999998654
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.5e-16 Score=160.13 Aligned_cols=71 Identities=45% Similarity=0.778 Sum_probs=65.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++||.++||+|||+||++||||+++.+ +.+.++|+.|++||+||+||.+|+.||.++...+
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 5999999999999999999999999999999999864 5689999999999999999999999999876544
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.66 E-value=1.9e-16 Score=154.78 Aligned_cols=68 Identities=37% Similarity=0.612 Sum_probs=63.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchh
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKD 70 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~ 70 (373)
++|||+||||+++||.++||+|||+||++||||+++. +.+.++|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999875 4689999999999999999999999999763
No 39
>KOG0718|consensus
Probab=99.65 E-value=1.1e-16 Score=159.22 Aligned_cols=73 Identities=45% Similarity=0.753 Sum_probs=67.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPN--NLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~--~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~ 74 (373)
.+||.+|+|+++||.++|++|||++++.|||||..+ ....|.+.|+.|+.||+|||||++|..||.+|..+|.
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 379999999999999999999999999999999753 3467899999999999999999999999999998887
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.9e-16 Score=157.45 Aligned_cols=70 Identities=44% Similarity=0.757 Sum_probs=65.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
.|||+||||+++||..+||+|||+|+++||||+++. +.+.++|+.|++||+||+||.+|+.||.+|...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 699999999999999999999999999999999875 4688999999999999999999999999876543
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.9e-16 Score=158.65 Aligned_cols=69 Identities=46% Similarity=0.776 Sum_probs=65.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
|.|||+||||+++||.++||+|||+|+++||||+++. ..+.++|+.|++||+||+||.+|+.||.+|..
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 8899999999999999999999999999999999975 57889999999999999999999999998764
No 42
>KOG0715|consensus
Probab=99.62 E-value=5.8e-16 Score=149.88 Aligned_cols=67 Identities=43% Similarity=0.634 Sum_probs=63.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
|||+||||+++||..+||+||++||++||||.|... .|.++|+.|..||+||+|+.+|..||..+..
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999884 8999999999999999999999999998654
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=2e-15 Score=111.95 Aligned_cols=59 Identities=59% Similarity=0.978 Sum_probs=54.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~ 60 (373)
++||+||||+++++..+||++|+++++.+|||++++..+.+...|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998544788999999999999999984
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.57 E-value=6.9e-15 Score=107.00 Aligned_cols=55 Identities=62% Similarity=1.050 Sum_probs=51.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSN 58 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd 58 (373)
|||+||||++++|.++||++|++|++.+|||+++.. +.+...|..|+.||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999764 6789999999999999986
No 45
>KOG0721|consensus
Probab=99.55 E-value=6.7e-15 Score=134.14 Aligned_cols=73 Identities=36% Similarity=0.617 Sum_probs=65.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQ 75 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~ 75 (373)
-|+|+||||+++||..+||+|||+|++++||||++.. .+..+.|..|.+||..|+|+..|..|..+|+...++
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq 171 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ 171 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence 3899999999999999999999999999999999764 466788999999999999999999999997654433
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-14 Score=130.41 Aligned_cols=69 Identities=55% Similarity=0.885 Sum_probs=63.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
+.+||+||||+++|+..+|++|||++++++|||+++.....+.+.|..|++||.||+|+..|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 468999999999999999999999999999999998753348899999999999999999999999863
No 47
>KOG0624|consensus
Probab=99.51 E-value=2.8e-14 Score=138.29 Aligned_cols=68 Identities=41% Similarity=0.701 Sum_probs=62.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNL--EEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~--~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
+|||.||||.++|+..+|-+|||++|.+||||-..+.. ..|..+|.-|..|-+||+||.+|+.+|..-
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 69999999999999999999999999999999876643 358899999999999999999999999864
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.50 E-value=1.7e-14 Score=151.59 Aligned_cols=70 Identities=44% Similarity=0.688 Sum_probs=65.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
+|||+||||+++|+..+||+|||+|+++||||+++. +.+..+|+.|++||++|+||.+|+.||.+|..++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 689999999999999999999999999999999876 5788899999999999999999999999876544
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.48 E-value=3.4e-14 Score=125.01 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=59.0
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhh
Q psy6717 3 CHYEVLGVPLNV--NDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDV 71 (373)
Q Consensus 3 d~Y~iLgv~~~a--s~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~ 71 (373)
.+|+||||+++| |..+||+|||++++++||||+++ .+.|+.|+.||++|+|+.+|..||.+|..
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 479999999999 99999999999999999999754 36899999999999999999999998754
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=7.4e-14 Score=124.99 Aligned_cols=69 Identities=28% Similarity=0.411 Sum_probs=60.4
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 1 MKCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNL--EEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 1 m~d~Y~iLgv~~~--as~~eIKkaYrkl~l~~HPDk~~~~~--~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
|.|||+||||++. ++..+|+++||+|++++|||+..... ..+...|..|++||.||+||.+|+.|+...
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 8899999999986 78999999999999999999986532 234567899999999999999999998753
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=2.9e-13 Score=121.76 Aligned_cols=67 Identities=31% Similarity=0.483 Sum_probs=59.2
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLE----EAKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 2 ~d~Y~iLgv~~~--as~~eIKkaYrkl~l~~HPDk~~~~~~----~a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
.|||+||||++. ++..+|+++||++++++|||+.....+ .+...|..|++||+||+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999995 788999999999999999999765432 3677999999999999999999999964
No 52
>KOG0550|consensus
Probab=99.41 E-value=2.1e-13 Score=134.72 Aligned_cols=68 Identities=44% Similarity=0.778 Sum_probs=65.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
++||.||||+++|+..+||+|||+++|.||||++..+..++..+|+.|-.||.||+||.+|..||+.-
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 58999999999999999999999999999999999887889999999999999999999999999863
No 53
>KOG0714|consensus
Probab=99.35 E-value=1e-12 Score=125.03 Aligned_cols=75 Identities=49% Similarity=0.787 Sum_probs=66.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcC
Q psy6717 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQ 75 (373)
Q Consensus 1 m~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~ 75 (373)
+.+||.||||.++|+..+|++||++++++||||+++.....+..+|.+|.+||+||+||.+|..||..+...+.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 479999999999999999999999999999999987753355568999999999999999999999998744443
No 54
>KOG0720|consensus
Probab=99.33 E-value=1e-12 Score=131.13 Aligned_cols=66 Identities=42% Similarity=0.620 Sum_probs=63.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
+|+|.||||+++++.++||+.||++|...|||||.. +.|.+.|+.|+.||++|+|+.+|..||...
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 699999999999999999999999999999999984 789999999999999999999999999754
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=2.5e-12 Score=116.19 Aligned_cols=67 Identities=28% Similarity=0.497 Sum_probs=58.4
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLE----EAKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 2 ~d~Y~iLgv~~~--as~~eIKkaYrkl~l~~HPDk~~~~~~----~a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
.|||+||||++. ++..+|+++||+|++++|||+.+...+ .+.+.+..|+.||.||+||.+|+.|+..
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 589999999985 689999999999999999999865432 2456679999999999999999999974
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.32 E-value=3.5e-12 Score=114.85 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=60.1
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNL----EEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 2 ~d~Y~iLgv~~~--as~~eIKkaYrkl~l~~HPDk~~~~~----~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
.|||++|||++. .+..+|+++||+|++++|||+..... ..+...|..|+.||.||+||.+|+.|+...
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 589999999986 67899999999999999999986543 236778999999999999999999999753
No 57
>KOG0722|consensus
Probab=99.26 E-value=2.5e-12 Score=119.71 Aligned_cols=65 Identities=42% Similarity=0.696 Sum_probs=61.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
.|.|+||||++.++..+|.+|||+||++||||++++ +++...|+.|..||++|.|...|..||-.
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 478999999999999999999999999999999987 56779999999999999999999999964
No 58
>KOG2785|consensus
Probab=99.23 E-value=3.1e-12 Score=125.11 Aligned_cols=82 Identities=33% Similarity=0.588 Sum_probs=66.9
Q ss_pred HhhhhhhhhhhhhhhHHHHHhHHHHHhhhhcCCCCCCCCccCCCCcchh-hhccCcccccchhhhccChHHHHHhhhhHH
Q psy6717 245 MESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEY-IEESSHLFCIACNKLFKTEKAFQNHENSKK 323 (373)
Q Consensus 245 a~e~~~~~w~~~~~le~~~~~l~~~~~~ef~~~~~~~~~~~~~~~~~~~-~~~~~~~~C~~C~K~F~s~~~~~nH~~SKk 323 (373)
.+.+...+||+| ||+|+++.|||++.++|..+....... .+.. ++....+||.+|+|.|.|.+++.+|++||+
T Consensus 19 Qr~HyKSdWHRY-NLKRkVA~lPPItaE~F~~k~~s~~~~-----~~~~~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~ 92 (390)
T KOG2785|consen 19 QRAHYKSDWHRY-NLKRKVASLPPITAEEFNEKVLSDDSE-----KEENLEEAESVVYCEACNKSFASPKAHENHLKSKK 92 (390)
T ss_pred HHHHhhhhHHHh-hHHhHhhcCCCcCHHHHhHHHhhhhhh-----hhhhhhhcccceehHHhhccccChhhHHHHHHHhh
Confidence 456888999999 999999999999999998877554321 1111 223456789999999999999999999999
Q ss_pred HHHHHHHHH
Q psy6717 324 HKENVAILK 332 (373)
Q Consensus 324 H~~~~~~~~ 332 (373)
|..+++++.
T Consensus 93 h~~~~~~~~ 101 (390)
T KOG2785|consen 93 HVENLSNHQ 101 (390)
T ss_pred cchhhhhhh
Confidence 999998865
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.13 E-value=7.1e-11 Score=99.12 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=45.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLS 57 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLs 57 (373)
++|+||||++++|.++|+++||+|++++|||++. +...|..|++||++|.
T Consensus 66 eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 66 EAYKILNISPTASKERIREAHKQLMLRNHPDNGG-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999853 2467899999999995
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.11 E-value=6.1e-11 Score=113.92 Aligned_cols=57 Identities=46% Similarity=0.653 Sum_probs=50.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------ChHHHHHHHHHHHHHHHHcCC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPN------NLEEAKEQFQLIQQAYEVLSN 58 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~------~~~~a~~~f~~I~~Ay~vLsd 58 (373)
.++|.||||++++|.++||+|||+|+++||||+... ..+.++++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999632 124689999999999999974
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.10 E-value=1.7e-10 Score=103.89 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 1 MKCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNL----EEAKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 1 m~d~Y~iLgv~~~--as~~eIKkaYrkl~l~~HPDk~~~~~----~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
|.|||++|||++. .+...|++.|+.|...+|||+..... ..+.+....|++||.||+||.+|+.|=..
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 8999999999985 89999999999999999999975543 23566889999999999999999999875
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.08 E-value=1.9e-10 Score=114.53 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=63.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhh
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPN----NLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFL 73 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~----~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l 73 (373)
|+|+||||+.+++..+||++||+|+.++||||.+. ..++..+.++.|++||..|+|...|..|-.+|....
T Consensus 99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 79999999999999999999999999999999765 335678899999999999999999999999875433
No 63
>PHA02624 large T antigen; Provisional
Probab=99.02 E-value=2.8e-10 Score=118.82 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=55.0
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhh
Q psy6717 2 KCHYEVLGVPLNV--NDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFY 65 (373)
Q Consensus 2 ~d~Y~iLgv~~~a--s~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~Y 65 (373)
+++|+||||+++| +..+||+|||+++++||||++.+ .+.|+.|+.||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 4689999999999 99999999999999999999743 57899999999999999999998
No 64
>KOG1150|consensus
Probab=98.96 E-value=7.2e-10 Score=100.13 Aligned_cols=64 Identities=42% Similarity=0.700 Sum_probs=59.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCChhhhhhhh
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYD 66 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD 66 (373)
|+|+||.|.|..+.++||+.||+|++..|||||+++.+.|...|-.|.+||.+|-|+..|..-+
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999998665433
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.75 E-value=1.8e-08 Score=89.54 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHcCChhhhhhhhhch
Q psy6717 13 NVNDEDLKKAYRKLALKWHPDKNPNNL----EEAKEQFQLIQQAYEVLSNPHERAFYDKHK 69 (373)
Q Consensus 13 ~as~~eIKkaYrkl~l~~HPDk~~~~~----~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~ 69 (373)
..+..+|+++||+|++++|||+.+... ..+...|..|++||.||+||.+|+.|+...
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 356789999999999999999964432 346789999999999999999999999864
No 66
>KOG0724|consensus
Probab=98.64 E-value=4.4e-08 Score=96.92 Aligned_cols=177 Identities=25% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHHcCChhhhhhhhhchhhhhcCCCCCCCcccCCccc
Q psy6717 13 NVNDEDLKKAYRKLALKWHPDKNPN---NLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLRQDYDESDSIDLTPYF 89 (373)
Q Consensus 13 ~as~~eIKkaYrkl~l~~HPDk~~~---~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~~~~~l~~~~~~~~~~~~~~~f 89 (373)
.++...|..+|+..++.+||++... ..-.....|++|.+||.||++...|...|.+.. +. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~----------~~l--- 68 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FA----------EAL--- 68 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HH----------hcC---
Confidence 3677889999999999999998742 112456779999999999999777778887641 11 111
Q ss_pred cCCCCCCCCCCCcchhHhhHHHHHHHHHHHhhhhhccCCCCCCCCCCCChhHHHHHHHHHhhcCccccccccccccccCC
Q psy6717 90 TASCYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQSFSTKKTYSWLKAFDINM 169 (373)
Q Consensus 90 ~~~~~~g~~~~~~gf~~~~~~~F~~~~~ee~~~~~~~~~~P~fG~~~s~~~~~v~~FY~~W~~F~t~r~F~w~d~~~~~~ 169 (373)
.+++...+.++..++.+|.....+ ...+++|.||.++++... |..||.+|..|.+|+.|.-.+..+...
T Consensus 69 -----~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~k~~~~y~~~~~~~~~~ 137 (335)
T KOG0724|consen 69 -----PLEKRLEDKIEEYIGLVFDVNIRE-----SGQKPFPKYGKSDTSLAE-VEEFYNFWPKFKSWRQYPQKDEPDEED 137 (335)
T ss_pred -----ccccccchhHHhhhhhHHHHhhhh-----ccCCCccccCcccccccc-ccccCCccccccccccCCCCCCccccc
Confidence 112222345666677777655432 134489999988655544 578999999999999999988877666
Q ss_pred CCCHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHh
Q psy6717 170 APNRRVLRLI-----EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQN 214 (373)
Q Consensus 170 a~~R~~rR~m-----ekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~ 214 (373)
..++..+|++ .+.|...+...+......++.||..+.+.||++.-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (335)
T KOG0724|consen 138 SENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDW 187 (335)
T ss_pred ccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccc
Confidence 6889999999 48899999999999999999999999999999864
No 67
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.56 E-value=2.5e-08 Score=62.45 Aligned_cols=26 Identities=46% Similarity=0.944 Sum_probs=25.3
Q ss_pred ccccchhhhccChHHHHHhhhhHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHK 325 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~ 325 (373)
+||++|+|.|+++++|.+|++||+|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 79999999999999999999999996
No 68
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.31 E-value=3.4e-07 Score=60.42 Aligned_cols=32 Identities=38% Similarity=0.660 Sum_probs=30.0
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENVAI 330 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~ 330 (373)
.++|.+|++.|.+..++.+|++||+|++++++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 47999999999999999999999999999875
No 69
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.17 E-value=8.8e-07 Score=54.12 Aligned_cols=25 Identities=44% Similarity=0.890 Sum_probs=24.2
Q ss_pred ccccchhhhccChHHHHHhhhhHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKH 324 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH 324 (373)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 5899999999999999999999998
No 70
>KOG0568|consensus
Probab=97.95 E-value=9.7e-06 Score=75.19 Aligned_cols=54 Identities=28% Similarity=0.564 Sum_probs=48.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH-HcCC
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYE-VLSN 58 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~-vLsd 58 (373)
.+|.||||..+|+..+++.||..|++.+|||.... +...+.|..|.+||. ||+.
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~--~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE--EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc--cccHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999876 345678999999999 7763
No 71
>KOG1789|consensus
Probab=97.95 E-value=1e-05 Score=87.99 Aligned_cols=51 Identities=45% Similarity=0.772 Sum_probs=44.5
Q ss_pred CchhhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy6717 3 CHYEVLGVPL----NVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLS 57 (373)
Q Consensus 3 d~Y~iLgv~~----~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLs 57 (373)
+-|+||.|+- ....+.||++|++||.+||||||| +..++|..+++||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHHHH
Confidence 4589999974 345588999999999999999996 46789999999999998
No 72
>KOG3408|consensus
Probab=97.72 E-value=1.6e-05 Score=66.52 Aligned_cols=39 Identities=33% Similarity=0.659 Sum_probs=35.5
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
..+-+||..|.+.|.+.+++..|.++|.|+++|+.|+..
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~ 92 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREV 92 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccC
Confidence 356699999999999999999999999999999999733
No 73
>KOG0723|consensus
Probab=97.70 E-value=7.3e-05 Score=61.46 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=42.4
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCCh
Q psy6717 6 EVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59 (373)
Q Consensus 6 ~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~ 59 (373)
.||||+++++.+.||.|+|++.+..|||+.... -.-..|++|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999998752 3345699999999643
No 74
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=97.13 E-value=0.00035 Score=47.38 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=20.9
Q ss_pred cccccchhhhcc--ChHHHHHhhhhHHHHHHHHH
Q psy6717 299 HLFCIACNKLFK--TEKAFQNHENSKKHKENVAI 330 (373)
Q Consensus 299 ~~~C~~C~K~F~--s~~~~~nH~~SKkH~~~~~~ 330 (373)
.+||..|++.|. +...-.+|+.|.+|+.++++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 379999999993 55677999999999999875
No 75
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.91 E-value=0.00054 Score=56.25 Aligned_cols=39 Identities=36% Similarity=0.645 Sum_probs=35.5
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
.-+.+||..|.+.|.|..++..|.++|-|+.+++.|+..
T Consensus 52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev 90 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV 90 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence 345689999999999999999999999999999999854
No 76
>KOG3192|consensus
Probab=96.80 E-value=0.0015 Score=57.41 Aligned_cols=67 Identities=27% Similarity=0.561 Sum_probs=54.4
Q ss_pred CCchhhcCCC--CCCCHHHHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 2 KCHYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNP----NNLEEAKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 2 ~d~Y~iLgv~--~~as~~eIKkaYrkl~l~~HPDk~~----~~~~~a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
++||.++|.. +...+.-++.-|.-...++|||+.. .....|.+....|++||.+|.||-.|+.|=.-
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4689999865 4556777777899999999999842 22346788899999999999999999999874
No 77
>KOG0717|consensus
Probab=96.51 E-value=0.008 Score=61.21 Aligned_cols=115 Identities=9% Similarity=-0.023 Sum_probs=85.4
Q ss_pred HHHHHHhhcCccccccccccccccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHH
Q psy6717 144 HNFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEK 223 (373)
Q Consensus 144 ~~FY~~W~~F~t~r~F~w~d~~~~~~a~~R~~rR~mekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~~~~~~~~~~ 223 (373)
..||..|.+|+|.--+.|. .+..--+..+..++.|.+.+..++....+.-+..|++++.++++++.|+.+........-
T Consensus 134 ~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~f 212 (508)
T KOG0717|consen 134 SKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGF 212 (508)
T ss_pred CccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999 777777888999999999999999999999999999999999999999887654333321
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhhHHHH
Q psy6717 224 EENALKLKERRRQQ-MIDRKKEMESMKENEWSKFSNLEKEL 263 (373)
Q Consensus 224 ~~~~~k~~~~r~~~-~~~~~~~a~e~~~~~w~~~~~le~~~ 263 (373)
..+. ..|.+. ...+..++..+...+|....+++++.
T Consensus 213 vkKr----DpRvk~~l~~k~~E~~r~kqe~~Rk~~~~~r~e 249 (508)
T KOG0717|consen 213 VKKR----DPRVKAMLELKDAEAYRSKQEESRKQQLRKRRE 249 (508)
T ss_pred HHhh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112222 22333455556677777766655544
No 78
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=96.44 E-value=0.0021 Score=63.06 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=33.3
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKE 333 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~ 333 (373)
....+||+.|++.|+..++|..|+.||.|.++++..+.
T Consensus 235 ~~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 235 WFPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred hccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 45568999999999999999999999999998876543
No 79
>KOG4727|consensus
Probab=96.35 E-value=0.0021 Score=57.09 Aligned_cols=36 Identities=28% Similarity=0.588 Sum_probs=32.6
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
+..+|||.+|+=.|+.--+|..|++.|+|+.++..+
T Consensus 72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred ccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 456799999999999999999999999999988754
No 80
>PLN02748 tRNA dimethylallyltransferase
Probab=95.56 E-value=0.0088 Score=62.03 Aligned_cols=38 Identities=21% Similarity=0.586 Sum_probs=33.4
Q ss_pred cCcccccchhh-hccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 297 SSHLFCIACNK-LFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 297 ~~~~~C~~C~K-~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
...++|.+|++ .+....+|+-|++|++|+++++.+++.
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~ 454 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK 454 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence 34567999997 899999999999999999999988654
No 81
>KOG0431|consensus
Probab=95.45 E-value=0.017 Score=59.67 Aligned_cols=45 Identities=33% Similarity=0.413 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCC--h----HHHHHHHHHHHHHHHHc
Q psy6717 12 LNVNDEDLKKAYRKLALKWHPDKNPNN--L----EEAKEQFQLIQQAYEVL 56 (373)
Q Consensus 12 ~~as~~eIKkaYrkl~l~~HPDk~~~~--~----~~a~~~f~~I~~Ay~vL 56 (373)
--.|...||++|||.+|..||||.+.. . -.+...|-.+++|+...
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999997553 1 23566666777776644
No 82
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.42 E-value=0.0086 Score=35.38 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.1
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+.|+.|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3599999999999999999976
No 83
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.10 E-value=0.027 Score=32.91 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=17.9
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+-|+.|++.|.+...+..|+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 3599999999999999999865
No 84
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.041 Score=49.66 Aligned_cols=66 Identities=30% Similarity=0.438 Sum_probs=52.1
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHH----HHHHHHHHHHHHHHcCChhhhhhhhhc
Q psy6717 3 CHYEVLGVPLNV--NDEDLKKAYRKLALKWHPDKNPNNLEE----AKEQFQLIQQAYEVLSNPHERAFYDKH 68 (373)
Q Consensus 3 d~Y~iLgv~~~a--s~~eIKkaYrkl~l~~HPDk~~~~~~~----a~~~f~~I~~Ay~vLsd~~~R~~YD~~ 68 (373)
+++...|.++.+ ....++..|+.+.+.+|||+....... +...+..++.||.+|.+|-.|..|=..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 456666766543 456689999999999999997554322 456899999999999999999999864
No 85
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.44 E-value=0.04 Score=33.81 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.2
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+.|..|++.|.+...|..|.++
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCccCCccCChhHHHHHhHH
Confidence 5799999999999999999964
No 86
>KOG3454|consensus
Probab=92.77 E-value=0.14 Score=45.54 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=31.1
Q ss_pred cccccchhhhcc--ChHHHHHhhhhHHHHHHHHHHHHHHH
Q psy6717 299 HLFCIACNKLFK--TEKAFQNHENSKKHKENVAILKEQML 336 (373)
Q Consensus 299 ~~~C~~C~K~F~--s~~~~~nH~~SKkH~~~~~~~~~~~~ 336 (373)
-+||..|+.... |-.+-..|+.++||+.+|+-.=+.+.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~ 42 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWM 42 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 379999996654 78889999999999999987654443
No 87
>KOG3032|consensus
Probab=92.70 E-value=0.091 Score=49.13 Aligned_cols=38 Identities=42% Similarity=0.661 Sum_probs=33.9
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
.++.+.|.+|+--.+ .+.|..|.+||+|+.++..|+..
T Consensus 32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~ 69 (264)
T KOG3032|consen 32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSR 69 (264)
T ss_pred CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhh
Confidence 345578999999999 99999999999999999999943
No 88
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=92.35 E-value=0.041 Score=43.70 Aligned_cols=31 Identities=39% Similarity=0.680 Sum_probs=26.1
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENVA 329 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~ 329 (373)
.+.|.+|++.|.+..++..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 4789999999999999999999999988644
No 89
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=91.95 E-value=0.12 Score=37.05 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=23.2
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENV 328 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~ 328 (373)
.-||..|.-.|. .|..|+.|++|++=+
T Consensus 5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA 31 (49)
T smart00586 5 PGYCENCREKYD---DLETHLLSEKHRRFA 31 (49)
T ss_pred CcccccHhHHHh---hHHHHhccHHHHHHH
Confidence 359999999998 588899999999844
No 90
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=91.80 E-value=0.095 Score=37.54 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=23.2
Q ss_pred ccccchhhhccChHHHHHhhhhHHHHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHKENV 328 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~~~~ 328 (373)
-||..|.-.|.+ |..|+.|.+|+.-+
T Consensus 6 GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 6 GYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred ccCccccchhhh---HHHHhCCHHHHHHH
Confidence 599999999985 89999999999854
No 91
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.08 E-value=0.15 Score=29.87 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=18.9
Q ss_pred cccchhhhccChHHHHHhhh
Q psy6717 301 FCIACNKLFKTEKAFQNHEN 320 (373)
Q Consensus 301 ~C~~C~K~F~s~~~~~nH~~ 320 (373)
.|..|++.|.+...+..|+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 59999999999999999987
No 92
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.12 Score=46.54 Aligned_cols=33 Identities=45% Similarity=0.717 Sum_probs=31.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKN 35 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~ 35 (373)
+.|.+||+.+.+....|+++|+++...+|||+-
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 579999999999999999999999999999985
No 93
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=90.43 E-value=0.56 Score=40.33 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCCh
Q psy6717 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59 (373)
Q Consensus 5 Y~iLgv~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLsd~ 59 (373)
..||||++.++.++|.+.|.+|-...+|++... .-.-..|..|.+.|...
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-----fYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGS-----FYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS------HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-----HHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999998753 44456688888888533
No 94
>KOG2837|consensus
Probab=89.42 E-value=0.15 Score=48.88 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=30.0
Q ss_pred ccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
|||..|.|.|...|.|.-|+.|--|.+.+...
T Consensus 26 wyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~ 57 (309)
T KOG2837|consen 26 WYCQMCQKQCRDENGFKCHTMSESHQRQLLLF 57 (309)
T ss_pred HHHHHHHHHhccccccccccCCHHHHHHHHHH
Confidence 89999999999999999999999999987655
No 95
>KOG0227|consensus
Probab=87.84 E-value=0.45 Score=43.41 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=32.9
Q ss_pred CcccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 298 SHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
+.+.|..|.-.-.|++.|..|..+|||+.||.+....
T Consensus 52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~ 88 (222)
T KOG0227|consen 52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK 88 (222)
T ss_pred cceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence 4578999999999999999999999999998876544
No 96
>PHA00616 hypothetical protein
Probab=86.19 E-value=0.43 Score=33.40 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.8
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+-|..|++.|.....+..|+++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 4599999999999999999954
No 97
>PHA02768 hypothetical protein; Provisional
Probab=85.35 E-value=0.46 Score=34.84 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred ccccchhhhccChHHHHHhhhhHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHK 325 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~ 325 (373)
+.|+.|+|.|.....+..|.+. |.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh--cC
Confidence 6799999999999999999987 65
No 98
>KOG0150|consensus
Probab=83.96 E-value=1.1 Score=43.66 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=29.9
Q ss_pred Ccccccchhhhcc-ChHHHHHhhhhHHHHHHHHHHH
Q psy6717 298 SHLFCIACNKLFK-TEKAFQNHENSKKHKENVAILK 332 (373)
Q Consensus 298 ~~~~C~~C~K~F~-s~~~~~nH~~SKkH~~~~~~~~ 332 (373)
...||..|.=+|+ +...-.+|.++|+|+.+|.+.-
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kri 44 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRI 44 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHH
Confidence 4469999999998 5667899999999999998753
No 99
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=83.95 E-value=0.74 Score=41.72 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=31.9
Q ss_pred cCcccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
.+.+.|..|.-.-.|.+.|..|..+|||+.++.+.
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 35588999999999999999999999999998766
No 100
>PF13446 RPT: A repeated domain in UCH-protein
Probab=83.42 E-value=3 Score=30.83 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHH
Q psy6717 3 CHYEVLGVPLNVNDEDLKKAYRKLAL 28 (373)
Q Consensus 3 d~Y~iLgv~~~as~~eIKkaYrkl~l 28 (373)
.-|.+|||+++.+...|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998876
No 101
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=82.72 E-value=1.2 Score=41.64 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=27.9
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHHHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQM 335 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~~ 335 (373)
.|-|.+|+|+|+...=...|+. +||-..|..+++.+
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev 112 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV 112 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred EECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence 4889999999999999999997 56888888776654
No 102
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=79.91 E-value=1 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=16.8
Q ss_pred ccccchhhhccChHHHHHhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHEN 320 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~ 320 (373)
.-|+.|+++| +...+..|++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3599999999 7788888875
No 103
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=77.84 E-value=1.3 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.5
Q ss_pred cccchhhhccChHHHHHhhhh
Q psy6717 301 FCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 301 ~C~~C~K~F~s~~~~~nH~~S 321 (373)
-|++|++.+ +..+.+.|+.+
T Consensus 3 ~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 3 QCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHHH
Confidence 599999999 78899999863
No 104
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=77.18 E-value=14 Score=35.44 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=23.4
Q ss_pred Ccccccchhhhc---cChHHHHHhhhhHHHHH
Q psy6717 298 SHLFCIACNKLF---KTEKAFQNHENSKKHKE 326 (373)
Q Consensus 298 ~~~~C~~C~K~F---~s~~~~~nH~~SKkH~~ 326 (373)
..-.|.+|+=.. -+..-+.+|+.+|-|.-
T Consensus 189 kl~VCeVCGA~Ls~~D~d~RladH~~GK~HlG 220 (254)
T PF03194_consen 189 KLEVCEVCGAFLSVGDNDRRLADHFGGKQHLG 220 (254)
T ss_pred CccchhhhhhHHhccchHHHHHHHhccchhhh
Confidence 345899999665 36778999999999965
No 105
>KOG1029|consensus
Probab=76.52 E-value=41 Score=37.20 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=6.4
Q ss_pred HHHHHHHhHHHHH
Q psy6717 176 LRLIEKENKRIRD 188 (373)
Q Consensus 176 rR~mekeN~k~r~ 188 (373)
|+.|+.+.+|.|.
T Consensus 333 Rq~leeqqqrere 345 (1118)
T KOG1029|consen 333 RQALEEQQQRERE 345 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544443
No 106
>PTZ00448 hypothetical protein; Provisional
Probab=72.80 E-value=1.4 Score=44.14 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.5
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHhHHHHHhhhhcCC
Q psy6717 243 KEMESMKENEWSKFSNLEKELKDIEASVAKEFGDE 277 (373)
Q Consensus 243 ~~a~e~~~~~w~~~~~le~~~~~l~~~~~~ef~~~ 277 (373)
...+.|...+||+| ||+|+++.|+++.+++|...
T Consensus 328 ~~qR~H~KSDwHrY-NLKRkl~gLppvse~eF~~~ 361 (373)
T PTZ00448 328 NAFKQHYRSEWHIF-NTKRNARKMEPISEEEFLEL 361 (373)
T ss_pred HHHHHHhhhhHHHH-HHHHHhcCCCCCCHHHHHHH
Confidence 44567889999998 99999999999999999753
No 107
>KOG0388|consensus
Probab=69.18 E-value=14 Score=40.64 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHHHHhhcCccccccccccccccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHH
Q psy6717 145 NFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKE 224 (373)
Q Consensus 145 ~FY~~W~~F~t~r~F~w~d~~~~~~a~~R~~rR~mekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~~~~~~~~~~~ 224 (373)
..|.-...|.+.|+-.. -.+...=-|..|||.-+--|-.|..-.+ -...+|.+.-|+++.+.-.+..+++.+.++.
T Consensus 360 k~~riiqq~q~~rstna---kk~s~lC~REarr~~~rs~K~~rt~~~r-akr~~Rem~~fwKk~er~~rd~rKK~EkEam 435 (1185)
T KOG0388|consen 360 KVHRIIQQYQSARSTNA---KKTSILCAREARRWQSRSYKTSRTNPIR-AKRIYREMYGFWKKNERNMRDLRKKAEKEAM 435 (1185)
T ss_pred HHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhhccccCcccchhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444455555554322 1223333578888888444433333332 2345788999999988777666666665555
Q ss_pred HHHHHHHHHHH
Q psy6717 225 ENALKLKERRR 235 (373)
Q Consensus 225 ~~~~k~~~~r~ 235 (373)
++.++++|.|.
T Consensus 436 er~KrEeEerE 446 (1185)
T KOG0388|consen 436 ERAKREEEERE 446 (1185)
T ss_pred HHHHHHHHHHH
Confidence 66565555443
No 108
>KOG4722|consensus
Probab=66.85 E-value=1.4e+02 Score=30.92 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=29.0
Q ss_pred ccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
--|..|+-...|+--+-.|.+++||..+|..+
T Consensus 494 kqcslcnvlissevylfshvkgrkhqqal~e~ 525 (672)
T KOG4722|consen 494 KQCSLCNVLISSEVYLFSHVKGRKHQQALNEL 525 (672)
T ss_pred hccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence 35999999999999999999999999987654
No 109
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=61.75 E-value=9.6 Score=33.98 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.5
Q ss_pred ccccchhhhcc--ChHHHHHhhhhHHHHHHHHHHH
Q psy6717 300 LFCIACNKLFK--TEKAFQNHENSKKHKENVAILK 332 (373)
Q Consensus 300 ~~C~~C~K~F~--s~~~~~nH~~SKkH~~~~~~~~ 332 (373)
+||..|+++.. +..+-..|+.+++|..+++..=
T Consensus 4 Y~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY 38 (188)
T COG5136 4 YFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYY 38 (188)
T ss_pred hHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHH
Confidence 78999999987 6778899999999999887653
No 110
>KOG2384|consensus
Probab=60.12 E-value=3.2 Score=38.23 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=28.0
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
....+||.+|+..|.. +.+.||..|=-|.-+++.+
T Consensus 81 ~e~lfyCE~Cd~~ip~-~~~snH~tSttHllsl~~~ 115 (223)
T KOG2384|consen 81 DEALFYCEVCDIYIPN-SKKSNHFTSTTHLLSLQHI 115 (223)
T ss_pred CCccchhhhhhhhccC-CCCccchhhHHHHhhhccC
Confidence 3456899999988875 5678999999998877755
No 111
>KOG4848|consensus
Probab=59.23 E-value=50 Score=30.39 Aligned_cols=19 Identities=16% Similarity=-0.044 Sum_probs=11.7
Q ss_pred HHhcCHHHHhHHHHHHHHH
Q psy6717 205 VRKKDKRVQNQALIKKQEK 223 (373)
Q Consensus 205 ~~k~DpRv~~~~~~~~~~~ 223 (373)
-+.-|||=.++...+++.+
T Consensus 181 Gy~vDprd~RF~emLqqkE 199 (225)
T KOG4848|consen 181 GYWVDPRDPRFEEMLQQKE 199 (225)
T ss_pred CccCCCCCHHHHHHHHHHH
Confidence 3566666666666666653
No 112
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=59.15 E-value=4.7 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.724 Sum_probs=19.2
Q ss_pred ccccchhhhccChHHHHHhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHEN 320 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~ 320 (373)
+-|+-|++.|.-++.|.-|.+
T Consensus 18 lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred eeCCchhHHHHHhHHHHHHhh
Confidence 459999999999999999984
No 113
>KOG1029|consensus
Probab=58.05 E-value=1.9e+02 Score=32.30 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=3.9
Q ss_pred hhhhhhhh
Q psy6717 249 KENEWSKF 256 (373)
Q Consensus 249 ~~~~w~~~ 256 (373)
.+++|..+
T Consensus 427 reqe~iv~ 434 (1118)
T KOG1029|consen 427 REQEWIVY 434 (1118)
T ss_pred HHHHHHHH
Confidence 44555543
No 114
>KOG2482|consensus
Probab=57.22 E-value=3.6 Score=40.92 Aligned_cols=29 Identities=28% Similarity=0.784 Sum_probs=26.8
Q ss_pred CcccccchhhhccChHHHHHhhhhHHHHH
Q psy6717 298 SHLFCIACNKLFKTEKAFQNHENSKKHKE 326 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~~~~~nH~~SKkH~~ 326 (373)
.-+-|..|.|.|+..+.+..|++-|.|++
T Consensus 194 ~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred hhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 34679999999999999999999999987
No 115
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=56.09 E-value=30 Score=32.87 Aligned_cols=18 Identities=22% Similarity=0.763 Sum_probs=14.0
Q ss_pred CcccccchhhhccChHHH
Q psy6717 298 SHLFCIACNKLFKTEKAF 315 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~~~~ 315 (373)
..+||++|+-.+.+.++.
T Consensus 83 ~~~~Cv~Cg~~i~~~~a~ 100 (236)
T PF12269_consen 83 LSIYCVTCGHEIPSKKAL 100 (236)
T ss_pred eeeeeeeCCCcCCHHHHH
Confidence 457899999988776655
No 116
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=54.36 E-value=4.4 Score=24.72 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=10.6
Q ss_pred ccccchhhhccC
Q psy6717 300 LFCIACNKLFKT 311 (373)
Q Consensus 300 ~~C~~C~K~F~s 311 (373)
+-|+.|+|.|.+
T Consensus 15 ~~C~~C~k~F~~ 26 (26)
T PF13465_consen 15 YKCPYCGKSFSN 26 (26)
T ss_dssp EEESSSSEEESS
T ss_pred CCCCCCcCeeCc
Confidence 679999999974
No 117
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=51.32 E-value=26 Score=29.37 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHHcCCh
Q psy6717 12 LNVNDEDLKKAYRKLALKWHPDKNPNNLE---EAKEQFQLIQQAYEVLSNP 59 (373)
Q Consensus 12 ~~as~~eIKkaYrkl~l~~HPDk~~~~~~---~a~~~f~~I~~Ay~vLsd~ 59 (373)
...+..+++.|.|.+.++.|||....... .-..-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999997544322 2234466666666666543
No 118
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=46.08 E-value=9 Score=38.83 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=23.2
Q ss_pred CcccccchhhhccChHHHHHhhhhHHHHHH
Q psy6717 298 SHLFCIACNKLFKTEKAFQNHENSKKHKEN 327 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~ 327 (373)
..-||..|.-.|.+ ++.|+.|++|+.-
T Consensus 421 k~GYCENCreky~~---lE~Hi~s~~HrrF 447 (468)
T COG5067 421 KKGYCENCREKYES---LEQHIVSEKHRRF 447 (468)
T ss_pred ccchhHHHHHHHHH---HHHHhhhhhhhhh
Confidence 34699999999975 8899999999874
No 119
>PHA00732 hypothetical protein
Probab=45.75 E-value=11 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.1
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+-|..|++.|.+...+..|.+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 4599999999999999999763
No 120
>PF13892 DBINO: DNA-binding domain
Probab=45.07 E-value=1.3e+02 Score=26.40 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHH
Q psy6717 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENAL 228 (373)
Q Consensus 173 R~~rR~mekeN~k~r~~~kke~~~~ir~Lv~~~~k~DpRv~~~~~~~~~~~~~~~~ 228 (373)
|.+||+.-+-++-..+-.-+. ...+|.+..|.++.+.-.....+..+.+..++.+
T Consensus 46 re~rr~~~rs~k~~Kd~~~Ra-krl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k 100 (139)
T PF13892_consen 46 REARRKQSRSQKNMKDTQLRA-KRLMREMLSFWKKNEKEERELRKKAEKEALEQKK 100 (139)
T ss_pred HHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777766555444333332 4567888888888887766544433333333333
No 121
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.46 E-value=19 Score=25.78 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=8.4
Q ss_pred cccchhhhccChHH
Q psy6717 301 FCIACNKLFKTEKA 314 (373)
Q Consensus 301 ~C~~C~K~F~s~~~ 314 (373)
-|++|++.|.....
T Consensus 22 ~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR 35 (54)
T ss_dssp E-TTT--EE-HHHH
T ss_pred cCCCCCCCCCHHHH
Confidence 79999999987765
No 122
>KOG3623|consensus
Probab=42.93 E-value=6.7 Score=42.69 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.6
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKE 326 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~ 326 (373)
.|.|+.|.|.|.--..|..|+.|||-+-
T Consensus 309 PfeCpnCkKRFSHSGSySSHmSSKKCIs 336 (1007)
T KOG3623|consen 309 PFECPNCKKRFSHSGSYSSHMSSKKCIS 336 (1007)
T ss_pred CcCCcccccccccCCcccccccccchhh
Confidence 4679999999999999999999999884
No 123
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=42.72 E-value=17 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=18.1
Q ss_pred ccccchhhhccChHHHHHhhhhHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKK 323 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKk 323 (373)
|-|+.|++ -.+...|..|.....
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H 25 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEH 25 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHC
Confidence 67999999 567888999986543
No 124
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=42.00 E-value=8.5 Score=30.09 Aligned_cols=26 Identities=27% Similarity=0.645 Sum_probs=0.0
Q ss_pred ccchhhhccChHHHHHhhhhHHHHHHH
Q psy6717 302 CIACNKLFKTEKAFQNHENSKKHKENV 328 (373)
Q Consensus 302 C~~C~K~F~s~~~~~nH~~SKkH~~~~ 328 (373)
|..|+..|.+...+..|+. +.|.-.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~~~ 27 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGFDI 27 (100)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccc-ccccccc
Confidence 9999999999999999996 4454433
No 125
>PTZ00448 hypothetical protein; Provisional
Probab=41.68 E-value=18 Score=36.57 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=32.7
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHHHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQM 335 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~~ 335 (373)
.+-|..|+-.|.+...+..|.+|=-|+=|+++.-..|
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gL 350 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKM 350 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCC
Confidence 4669999999999999999999999999998775543
No 126
>KOG3576|consensus
Probab=40.92 E-value=12 Score=34.79 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=22.2
Q ss_pred ccCcccccchhhhccChHHHHHhhhh
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+.+.+.|.+|+|.|.-+..++.|++-
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kc 139 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKC 139 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhh
Confidence 35668899999999999999999853
No 127
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=40.69 E-value=41 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcC
Q psy6717 11 PLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLS 57 (373)
Q Consensus 11 ~~~as~~eIKkaYrkl~l~~HPDk~~~~~~~a~~~f~~I~~Ay~vLs 57 (373)
+++||.+||..|+.++..+|--|. ..-..|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~---------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE---------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHH
Confidence 578999999999999999983332 22345889998764
No 128
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=39.05 E-value=3.9e+02 Score=31.01 Aligned_cols=10 Identities=0% Similarity=-0.453 Sum_probs=4.0
Q ss_pred ccchhhhccC
Q psy6717 302 CIACNKLFKT 311 (373)
Q Consensus 302 C~~C~K~F~s 311 (373)
|..|.-...+
T Consensus 563 ~~~~~~~~~~ 572 (1021)
T PTZ00266 563 RNHSGVRSGI 572 (1021)
T ss_pred CCcccccccc
Confidence 4444443333
No 129
>KOG2893|consensus
Probab=38.79 E-value=11 Score=35.71 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=23.3
Q ss_pred CcccccchhhhccChHHHHHhhhhHHH
Q psy6717 298 SHLFCIACNKLFKTEKAFQNHENSKKH 324 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~~~~~nH~~SKkH 324 (373)
..-||=.||+-|..++.+..|.+-|..
T Consensus 9 ~kpwcwycnrefddekiliqhqkakhf 35 (341)
T KOG2893|consen 9 DKPWCWYCNREFDDEKILIQHQKAKHF 35 (341)
T ss_pred CCceeeecccccchhhhhhhhhhhccc
Confidence 345899999999999999999988763
No 130
>KOG0163|consensus
Probab=38.79 E-value=3.2e+02 Score=30.63 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=3.4
Q ss_pred CCCHHHHHH
Q psy6717 13 NVNDEDLKK 21 (373)
Q Consensus 13 ~as~~eIKk 21 (373)
.++..++=.
T Consensus 707 R~~F~dLYa 715 (1259)
T KOG0163|consen 707 RTSFADLYA 715 (1259)
T ss_pred cccHHHHHH
Confidence 333333333
No 131
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=38.03 E-value=3.4e+02 Score=31.49 Aligned_cols=7 Identities=57% Similarity=0.449 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy6717 176 LRLIEKE 182 (373)
Q Consensus 176 rR~meke 182 (373)
|..++++
T Consensus 437 R~r~e~e 443 (1021)
T PTZ00266 437 RARIEKE 443 (1021)
T ss_pred HHHHHHH
Confidence 3334444
No 132
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=37.90 E-value=6.8 Score=24.77 Aligned_cols=19 Identities=32% Similarity=0.828 Sum_probs=14.3
Q ss_pred ccccchhhhccChHHHHHhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHE 319 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~ 319 (373)
+-|+-|++.| +...|.+|.
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 3599999999 777888885
No 133
>PHA00733 hypothetical protein
Probab=36.34 E-value=20 Score=30.67 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.6
Q ss_pred ccccchhhhccChHHHHHhhhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~S 321 (373)
+-|..|+|.|.....+..|..-
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~ 121 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCK 121 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHH
Confidence 5799999999999999988653
No 134
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=35.62 E-value=27 Score=31.28 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=26.7
Q ss_pred ccccchhhhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
|.|..|.=.=-.+..+..|+.|+-|++-++-+
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i 32 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYI 32 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHH
Confidence 46999986666788999999999999877655
No 135
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=35.14 E-value=2.5e+02 Score=29.14 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=6.4
Q ss_pred hhcCcccccccccc
Q psy6717 150 WQSFSTKKTYSWLK 163 (373)
Q Consensus 150 W~~F~t~r~F~w~d 163 (373)
|.-..|+-.+.+.+
T Consensus 261 wtl~Qq~i~~~~l~ 274 (429)
T PRK00247 261 WTLIQNIIMYLILE 274 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444554443444
No 136
>PF14968 CCDC84: Coiled coil protein 84
Probab=34.76 E-value=24 Score=35.25 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=24.9
Q ss_pred cccchhhhccChHHHHHhhhhHHHHHHHHHHH
Q psy6717 301 FCIACNKLFKTEKAFQNHENSKKHKENVAILK 332 (373)
Q Consensus 301 ~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~ 332 (373)
||.+|...... ...|.=|++|++++..+.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L 29 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFL 29 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHH
Confidence 89999987765 889999999999887664
No 137
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=32.32 E-value=25 Score=36.75 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=26.5
Q ss_pred ccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
|.|+.|.+.|.+...+.+|+-++.-......++.-
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~~l~P~lqs~ 92 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPAGLKPKLQSV 92 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhhhcChhhhhh
Confidence 56999999999999999999887544433444433
No 138
>KOG1994|consensus
Probab=32.19 E-value=22 Score=33.56 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=22.1
Q ss_pred cCcccccchhhhccChHHHHHhhh
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHEN 320 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~ 320 (373)
.+.|||.-|+=.|++...+..|+-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 578999999999999999999984
No 139
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=31.84 E-value=22 Score=24.12 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.1
Q ss_pred ccccchhhhccC----hHHHHHhhh
Q psy6717 300 LFCIACNKLFKT----EKAFQNHEN 320 (373)
Q Consensus 300 ~~C~~C~K~F~s----~~~~~nH~~ 320 (373)
..|..|++.|+. -+.+..||+
T Consensus 17 a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 17 AKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp EEETTTTEE-----SSTHHHHHHHH
T ss_pred EEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 579999999986 478888884
No 140
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=31.82 E-value=2.7e+02 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=9.3
Q ss_pred HhcCHHHHhHHHHHHHHHHH
Q psy6717 206 RKKDKRVQNQALIKKQEKEE 225 (373)
Q Consensus 206 ~k~DpRv~~~~~~~~~~~~~ 225 (373)
++-|||--++.+.+++.+++
T Consensus 171 y~vDprdprF~eml~~kEke 190 (217)
T PF10147_consen 171 YKVDPRDPRFQEMLQEKEKE 190 (217)
T ss_pred CcCCCCChHHHHHHHHHHHH
Confidence 34455544455555554333
No 141
>PTZ00121 MAEBL; Provisional
Probab=29.54 E-value=9.2e+02 Score=29.44 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=5.9
Q ss_pred hcCccccccccc
Q psy6717 151 QSFSTKKTYSWL 162 (373)
Q Consensus 151 ~~F~t~r~F~w~ 162 (373)
.++.|...|++.
T Consensus 1071 ~~~~s~~~~~~~ 1082 (2084)
T PTZ00121 1071 GLKPSYKDFDFD 1082 (2084)
T ss_pred ccccccccccch
Confidence 344555555544
No 142
>PF12907 zf-met2: Zinc-binding
Probab=29.11 E-value=32 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=20.9
Q ss_pred ccccchhhhcc---ChHHHHHhhhhHHHH
Q psy6717 300 LFCIACNKLFK---TEKAFQNHENSKKHK 325 (373)
Q Consensus 300 ~~C~~C~K~F~---s~~~~~nH~~SKkH~ 325 (373)
+.|.+|.-+|- +.++|..|-.+|.=+
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK 30 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPK 30 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCC
Confidence 46999998887 668999999887533
No 143
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=28.37 E-value=16 Score=25.37 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=8.7
Q ss_pred cccchhhhc
Q psy6717 301 FCIACNKLF 309 (373)
Q Consensus 301 ~C~~C~K~F 309 (373)
||.+|+|.|
T Consensus 8 yC~~Cdk~~ 16 (43)
T PF12855_consen 8 YCIVCDKQI 16 (43)
T ss_pred HHHHhhccc
Confidence 899999999
No 144
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.01 E-value=11 Score=35.24 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.3
Q ss_pred ccccchhhhccChHHHHHhhhhH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSK 322 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SK 322 (373)
+.|++|++.|.+..+..++.+-.
T Consensus 6 ~~CPvC~~~F~~~~vrs~~~r~~ 28 (214)
T PF09986_consen 6 ITCPVCGKEFKTKKVRSGKIRVI 28 (214)
T ss_pred eECCCCCCeeeeeEEEcCCceEe
Confidence 57999999999999888777543
No 145
>KOG2891|consensus
Probab=27.95 E-value=2.7e+02 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=9.7
Q ss_pred CCCCCCCCCcchhHhhH
Q psy6717 93 CYKGYGDGEKGFYSVYR 109 (373)
Q Consensus 93 ~~~g~~~~~~gf~~~~~ 109 (373)
.+.|||.++.-||..|-
T Consensus 211 q~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 211 QFHGFGFGGDLFFEAYV 227 (445)
T ss_pred eeeccccCcchhHHHHH
Confidence 35666666555655443
No 146
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=27.29 E-value=21 Score=33.05 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=0.0
Q ss_pred Ccccccchh-hhccChHHHHHhhhhHHHHHHHHHH
Q psy6717 298 SHLFCIACN-KLFKTEKAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 298 ~~~~C~~C~-K~F~s~~~~~nH~~SKkH~~~~~~~ 331 (373)
-.|.|.+|+ ..|+-..+|..|...-+|..-++.|
T Consensus 100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL 134 (196)
T PF11931_consen 100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL 134 (196)
T ss_dssp -----------------------------------
T ss_pred CeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence 457899996 6788999999999999998877665
No 147
>KOG2370|consensus
Probab=26.65 E-value=3.2e+02 Score=28.84 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHHH----------------------------------------HHHHHHHHHHHHhcC
Q psy6717 170 APNRRVLRLIEKENKRIRDKAKKEY----------------------------------------NDTVKNLVEFVRKKD 209 (373)
Q Consensus 170 a~~R~~rR~mekeN~k~r~~~kke~----------------------------------------~~~ir~Lv~~~~k~D 209 (373)
++..+.|||-+|..|+++.++++-. .-++..+-..++.+=
T Consensus 50 ~EEKrarrm~kK~~K~a~R~~~~~~d~~~~~YsN~~npF~DSnLT~tFvw~kklere~~rgls~~ef~~~~~qrr~renl 129 (623)
T KOG2370|consen 50 SEEKRARRMSKKAQKKALRAAKKLKDQSVSGYSNDSNPFGDSNLTRTFVWGKKLEREGSRGLSPREFRVSNQQRRARENL 129 (623)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccCccCCCCCcccccchhheeccchhhhhcccCCChhhccHhhHHHHHHhcc
Confidence 3455667777777777776666543 112444455567788
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6717 210 KRVQNQALIKKQEKEENALKLKERRRQQMI 239 (373)
Q Consensus 210 pRv~~~~~~~~~~~~~~~~k~~~~r~~~~~ 239 (373)
|+|..+++.+++++.+++.++.+....+++
T Consensus 130 ~evekvkk~reer~~eka~~Ede~mmlqra 159 (623)
T KOG2370|consen 130 PEVEKVKKRREERREEKAMQEDEFMMLQRA 159 (623)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888887777777777766665555444
No 148
>KOG2505|consensus
Probab=26.30 E-value=64 Score=34.00 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.6
Q ss_pred ccCcccccchhhhccChHHHHHhhhhHHHHHHHHHHHH
Q psy6717 296 ESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKE 333 (373)
Q Consensus 296 ~~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~ 333 (373)
..+.+.|..|+-.|.|......|.+|=-|+-|+++.-+
T Consensus 63 ~sd~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~ 100 (591)
T KOG2505|consen 63 ISDSDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLR 100 (591)
T ss_pred hcccccccccCCccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667899999999999999999999999999987643
No 149
>PHA00733 hypothetical protein
Probab=25.02 E-value=42 Score=28.68 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.2
Q ss_pred cccccchhhhccChHHHHHhhhh
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENS 321 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~S 321 (373)
.+.|..|++.|.+...+..|...
T Consensus 73 Py~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 73 PYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CccCCCCCCcCCCHHHHHHHHhc
Confidence 36799999999999999998863
No 150
>KOG3993|consensus
Probab=24.84 E-value=35 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=24.8
Q ss_pred cCcccccchhhhccChHHHHHhhhhHHHHHHHH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSKKHKENVA 329 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~ 329 (373)
.+.|-|..|.|+|..+.-+..|.-+-....+.+
T Consensus 354 ~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k 386 (500)
T KOG3993|consen 354 SGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK 386 (500)
T ss_pred CceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence 346779999999999999999976644333333
No 151
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=24.64 E-value=37 Score=26.51 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=22.5
Q ss_pred cCcccccchhhhccChHHHHHhhhhH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSK 322 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SK 322 (373)
.+.+|...|+|.|.|..++..+|.+.
T Consensus 26 ~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 26 FDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred ceEEEECCCCCEEECHHHHHHHHHhC
Confidence 45689999999999999999988764
No 152
>KOG0796|consensus
Probab=23.23 E-value=7.6e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=24.0
Q ss_pred Ccccccchhhhcc---ChHHHHHhhhhHHHHH
Q psy6717 298 SHLFCIACNKLFK---TEKAFQNHENSKKHKE 326 (373)
Q Consensus 298 ~~~~C~~C~K~F~---s~~~~~nH~~SKkH~~ 326 (373)
..-.|.+|+=... +..-+..|+.+|-|.-
T Consensus 185 kl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlG 216 (319)
T KOG0796|consen 185 KLRVCEVCGAFLSVNDADRRLADHFGGKLHLG 216 (319)
T ss_pred hhhHHHhhhHHHhccchHHHHHHhhcchHHHH
Confidence 3457999998765 7788999999999965
No 153
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=3.6e+02 Score=21.15 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHh----CCCCC
Q psy6717 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKW----HPDKN 35 (373)
Q Consensus 2 ~d~Y~iLgv~~~as~~eIKkaYrkl~l~~----HPDk~ 35 (373)
+|.-++.|+.|.||+.+|+.|-++.+++. ||.+.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~ 40 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAA 40 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchh
Confidence 45567889999999999999987766664 55543
No 154
>KOG0163|consensus
Probab=22.92 E-value=7.5e+02 Score=27.96 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q psy6717 195 NDTVKNLVEFVRK 207 (373)
Q Consensus 195 ~~~ir~Lv~~~~k 207 (373)
...|.+|++.-++
T Consensus 926 ~rk~qE~~E~ER~ 938 (1259)
T KOG0163|consen 926 LRKIQELAEAERK 938 (1259)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 155
>KOG2462|consensus
Probab=22.73 E-value=37 Score=32.91 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=11.4
Q ss_pred ccccchhhhccChHHHHHhh
Q psy6717 300 LFCIACNKLFKTEKAFQNHE 319 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~ 319 (373)
|-|+.|+|-|....-+..|+
T Consensus 216 F~C~hC~kAFADRSNLRAHm 235 (279)
T KOG2462|consen 216 FSCPHCGKAFADRSNLRAHM 235 (279)
T ss_pred ccCCcccchhcchHHHHHHH
Confidence 45666666666555554444
No 156
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.27 E-value=6.2e+02 Score=23.26 Aligned_cols=7 Identities=57% Similarity=0.619 Sum_probs=3.4
Q ss_pred HhcCHHH
Q psy6717 206 RKKDKRV 212 (373)
Q Consensus 206 ~k~DpRv 212 (373)
.+.||-+
T Consensus 71 ~~~dpd~ 77 (190)
T PF06936_consen 71 AKKDPDV 77 (190)
T ss_dssp HTTSHHH
T ss_pred hhcChhH
Confidence 3455554
No 157
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=21.76 E-value=38 Score=23.78 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.4
Q ss_pred ccccchhhhccCh-----HHHHHhhhh
Q psy6717 300 LFCIACNKLFKTE-----KAFQNHENS 321 (373)
Q Consensus 300 ~~C~~C~K~F~s~-----~~~~nH~~S 321 (373)
-.|..|++.+... +.|.+|+++
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~ 45 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRR 45 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence 4699999999754 689999987
No 158
>KOG2785|consensus
Probab=21.70 E-value=63 Score=32.81 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.1
Q ss_pred cccccchhhhccChHHHHHhhhhHHHHHHHHHHHHH
Q psy6717 299 HLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334 (373)
Q Consensus 299 ~~~C~~C~K~F~s~~~~~nH~~SKkH~~~~~~~~~~ 334 (373)
.|-|..|...|.+.-.-..|-+|-=|+=||++.-..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~ 38 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVAS 38 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhc
Confidence 467999999999999999999999999999876433
No 159
>PF14968 CCDC84: Coiled coil protein 84
Probab=21.68 E-value=53 Score=32.91 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=28.3
Q ss_pred CcccccchhhhccCh------HHHHHhhhhHHHHHHHHHH
Q psy6717 298 SHLFCIACNKLFKTE------KAFQNHENSKKHKENVAIL 331 (373)
Q Consensus 298 ~~~~C~~C~K~F~s~------~~~~nH~~SKkH~~~~~~~ 331 (373)
.-|+|..|+--.... .-...||.|.-|+++|+..
T Consensus 57 ~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F 96 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKF 96 (336)
T ss_pred ceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHH
Confidence 348899999877754 4567899999999999987
No 160
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=20.95 E-value=54 Score=24.19 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=22.0
Q ss_pred cCcccccchhhhccChHHHHHhhhhH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSK 322 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SK 322 (373)
.+.+|...|+|.|.|.......|...
T Consensus 25 ~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 25 GDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred ceEEEECCCCceecCHHHHHHHHHhC
Confidence 35689999999999999999888653
No 161
>KOG4661|consensus
Probab=20.87 E-value=7.8e+02 Score=26.76 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=12.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHH
Q psy6717 7 VLGVPLNVNDEDLKKAYRKLALK 29 (373)
Q Consensus 7 iLgv~~~as~~eIKkaYrkl~l~ 29 (373)
|-||+...-..+||..|-+..+.
T Consensus 410 VSGLSstTRAtDLKnlFSKyGKV 432 (940)
T KOG4661|consen 410 VSGLSSTTRATDLKNLFSKYGKV 432 (940)
T ss_pred eeccccchhhhHHHHHHHHhcce
Confidence 34555555555666666555443
No 162
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=20.82 E-value=79 Score=16.42 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHcC
Q psy6717 45 QFQLIQQAYEVLS 57 (373)
Q Consensus 45 ~f~~I~~Ay~vLs 57 (373)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 163
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=20.50 E-value=53 Score=25.59 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=22.1
Q ss_pred cCcccccchhhhccChHHHHHhhhhH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSK 322 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SK 322 (373)
.+.+|...|+|.|.|..+...+|...
T Consensus 28 ~dV~Y~sP~GkklRs~~ev~~YL~~~ 53 (77)
T smart00391 28 FDVYYISPCGKKLRSKSELARYLHKN 53 (77)
T ss_pred ccEEEECCCCCeeeCHHHHHHHHHhC
Confidence 45689999999999999999888654
No 164
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=20.36 E-value=49 Score=28.64 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=13.6
Q ss_pred cCcccccchhhhccChHHHHHhhhhH
Q psy6717 297 SSHLFCIACNKLFKTEKAFQNHENSK 322 (373)
Q Consensus 297 ~~~~~C~~C~K~F~s~~~~~nH~~SK 322 (373)
.+.+.|-.|+|.|++- ..||.+-
T Consensus 70 ~d~i~clecGk~~k~L---krHL~~~ 92 (132)
T PF05443_consen 70 PDYIICLECGKKFKTL---KRHLRTH 92 (132)
T ss_dssp SS-EE-TBT--EESBH---HHHHHHT
T ss_pred cCeeEEccCCcccchH---HHHHHHc
Confidence 3456899999999975 6666543
No 165
>KOG3608|consensus
Probab=20.06 E-value=57 Score=32.91 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=20.9
Q ss_pred ccccchhhhccChHHHHHhhhhHHH
Q psy6717 300 LFCIACNKLFKTEKAFQNHENSKKH 324 (373)
Q Consensus 300 ~~C~~C~K~F~s~~~~~nH~~SKkH 324 (373)
+-|-+|+|.|.+-+.+..||.- ||
T Consensus 353 Y~CH~Cdr~ft~G~~L~~HL~k-kH 376 (467)
T KOG3608|consen 353 YACHCCDRFFTSGKSLSAHLMK-KH 376 (467)
T ss_pred eeeecchhhhccchhHHHHHHH-hh
Confidence 4499999999999999999974 45
Done!