RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6717
(373 letters)
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 105 bits (266), Expect = 1e-25
Identities = 37/67 (55%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+ +YEVLGV N +++++KKAYRKLA+K+HPD+NP + +EA+E+F+ I++AYEVLS+P +
Sbjct: 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQK 62
Query: 62 RAFYDKH 68
RA YD++
Sbjct: 63 RAAYDQY 69
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 91.4 bits (228), Expect = 3e-23
Identities = 39/64 (60%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHER 62
+YE+LGVP + +DE++KKAYRKLALK+HPDKNP + A+E+F+ I +AYEVLS+P +R
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGD-PAAEEKFKEINEAYEVLSDPEKR 59
Query: 63 AFYD 66
A YD
Sbjct: 60 AIYD 63
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 98.9 bits (247), Expect = 4e-23
Identities = 36/62 (58%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
YE+LGV + ++E++KKAYRKLA K+HPD+NP + +EA+E+F+ I +AYEVLS+P +RA
Sbjct: 7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAA 65
Query: 65 YD 66
YD
Sbjct: 66 YD 67
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 98.1 bits (245), Expect = 6e-23
Identities = 35/63 (55%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
YE+LGV + ++E++KKAYRKLA K+HPD+N + +EA+E+F+ I +AYEVLS+P +RA
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQ 60
Query: 65 YDK 67
YD+
Sbjct: 61 YDQ 63
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 94.5 bits (235), Expect = 1e-21
Identities = 34/66 (51%), Positives = 53/66 (80%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +YE+LGV N E++K+AY++L +WHPD++P N +EA+++F+ IQ+AYEVLS+P +
Sbjct: 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK 63
Query: 62 RAFYDK 67
RA YD+
Sbjct: 64 RAMYDR 69
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 86.5 bits (215), Expect = 2e-21
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59
+YE+LGVP + + +++KKAYRKLALK+HPDKNP + EEA+E+F+ I +AYEVLS+P
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 83.7 bits (208), Expect = 1e-20
Identities = 34/56 (60%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSN 58
+Y++LGVP + +DE++KKAYRKLALK+HPDKNP++ EA+E+F+ I +AYEVLS+
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 88.3 bits (219), Expect = 2e-19
Identities = 37/64 (57%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLGV + + +++KKAYRKLALK+HPDKNP+N +EA+E F+ + +AYEVLSN +R
Sbjct: 5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRR 63
Query: 64 FYDK 67
YD+
Sbjct: 64 RYDQ 67
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 87.9 bits (218), Expect = 3e-19
Identities = 35/66 (53%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +YE+LGV N +E++KKAYR+LA K+HPD NP + +EA+++F+ I +AYE+LS+P +
Sbjct: 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQK 63
Query: 62 RAFYDK 67
RA YD+
Sbjct: 64 RAQYDQ 69
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 87.9 bits (218), Expect = 3e-19
Identities = 33/66 (50%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+ +YEVLGV + +++++KKAYRKLAL++HPD+NP+N EA+++F+ +AYEVL + +
Sbjct: 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEK 62
Query: 62 RAFYDK 67
RA YD+
Sbjct: 63 RARYDR 68
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 87.1 bits (216), Expect = 5e-19
Identities = 33/67 (49%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+ +YE+LGV + ++E++KK+YRKLA+K+HPD+NP + +EA+E F+ +AYEVLS+P +
Sbjct: 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKK 62
Query: 62 RAFYDKH 68
R YD++
Sbjct: 63 RGIYDQY 69
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 87.0 bits (216), Expect = 5e-19
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y +LGV N +D ++K+AYRKLA + HPD NP+ EEA+E+F+ I AYEVLS+P +R
Sbjct: 5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR 62
Query: 64 FYD 66
D
Sbjct: 63 IVD 65
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 86.4 bits (214), Expect = 9e-19
Identities = 35/66 (53%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +YEVLG+ +D+++KKA+RKLA+K+HPDKN N +EA+E+F+ I +AY+VLS+P +
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQK 62
Query: 62 RAFYDK 67
+A YD+
Sbjct: 63 KAQYDQ 68
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 85.0 bits (210), Expect = 3e-18
Identities = 36/66 (54%), Positives = 51/66 (77%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +Y++LGV N + ED+KKA+R+LA KWHPD +P N EA+E+F+ I +AYEVLS+P +
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62
Query: 62 RAFYDK 67
R YD+
Sbjct: 63 RRQYDQ 68
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 84.8 bits (210), Expect = 4e-18
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +YE+LGV N E++KKAYR+LA K+HPD N N EA+E+F+ I +AY+VLS+P +
Sbjct: 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEK 60
Query: 62 RAFYDK 67
R YD+
Sbjct: 61 RKLYDQ 66
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 82.2 bits (203), Expect = 2e-17
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LG+ + + ED+KKAYRKLA+K+HPDKN +A+E+F+ I +AY VLS+ +RA
Sbjct: 7 YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA 64
Query: 64 FYDKHKDVFLRQDYDESDSIDLTPYFTASCYKGYGD 99
YD+ + Y D F + + G+GD
Sbjct: 65 QYDRFGHAGIDNQYSAED------IFRGADFGGFGD 94
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 80.7 bits (199), Expect = 9e-17
Identities = 32/65 (49%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y +LGV + E++KKAYRKLA+K+HPDKNP + EA+++F+ + +AYEVLS+ +R
Sbjct: 3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 64 FYDKH 68
YD++
Sbjct: 62 SYDRY 66
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 79.9 bits (197), Expect = 2e-16
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLGV +++KKAYRK A+++HPDKNP + +EA+E+F+ +AY+VLS+P +R+
Sbjct: 7 YYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRS 65
Query: 64 FYDK 67
YD+
Sbjct: 66 RYDQ 69
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 79.2 bits (195), Expect = 3e-16
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LGV + +++K AYRKLALK+HPD+N + A E+F I +AY VLS+ +RA
Sbjct: 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA 61
Query: 64 FYDK 67
YD+
Sbjct: 62 HYDR 65
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 78.4 bits (193), Expect = 5e-16
Identities = 32/71 (45%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +Y+VLGVP + + ++KKAYRKLA ++HPD N + +A+E+F+ I +AY+VLS+ +
Sbjct: 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKK 67
Query: 62 RAFYDKHKDVF 72
R YD+ + +F
Sbjct: 68 RKEYDEARSLF 78
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 77.3 bits (191), Expect = 9e-16
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPD--KNPNNLEEAKEQFQLIQQAYEVLSN 58
+YE+LGV + + ++LK+AYR+LA K+HPD K P A+++F+ I +AYEVLS+
Sbjct: 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG----AEDRFKEINRAYEVLSD 57
Query: 59 PHERAFYDK 67
P RA YD+
Sbjct: 58 PETRARYDQ 66
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 76.1 bits (187), Expect = 1e-15
Identities = 31/67 (46%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +Y +LGVP N + +++KKA++KLA K+HPD N + A+E+F+ I +AY VLS+P +
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEK 61
Query: 62 RAFYDKH 68
R YD +
Sbjct: 62 RRIYDTY 68
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 74.9 bits (183), Expect = 2e-15
Identities = 38/69 (55%), Positives = 54/69 (78%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
+ +YE+LGVP N + E++KKAYRKLALK+HPD+NP + + A+E+F+ I +AYE+LS+P
Sbjct: 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64
Query: 61 ERAFYDKHK 69
RA YDK
Sbjct: 65 RRAEYDKIG 73
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 75.9 bits (187), Expect = 3e-15
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K Y+ LGV + + E++KKAYRKLA + HPD NP + A+E+F+ + +A++VLS+P +
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAK 67
Query: 62 RAFYDKHKDVF 72
R YD+ + +F
Sbjct: 68 RKEYDETRRLF 78
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 75.8 bits (186), Expect = 3e-15
Identities = 32/66 (48%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+ +Y++LGV + NDE++K AYRKLA+K+HPDKN N +E++E+F+ +AYE+L +P +
Sbjct: 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKK 62
Query: 62 RAFYDK 67
R YD+
Sbjct: 63 RQAYDQ 68
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 74.0 bits (182), Expect = 1e-14
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y+ LGV + + +++KKAYRKL+ K+HPD N A+E+++ +Q+AYE LS+P +RA
Sbjct: 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAA 64
Query: 65 YDK 67
YD+
Sbjct: 65 YDQ 67
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 73.6 bits (181), Expect = 2e-14
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLGV + + +++KKAYRKL+ K+HPD N E A E+F+ I +AYEVLS+ +RA
Sbjct: 6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRA 63
Query: 64 FYDK 67
YD+
Sbjct: 64 QYDQ 67
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 73.1 bits (179), Expect = 3e-14
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 32/234 (13%)
Query: 4 HYEVLGVPL---NVNDEDLKKAYRKLALKWHPDKNPNNLE-EAKEQFQLIQQAYEVLSNP 59
Y +LG+ + KA++K K+HPDK E F+LIQ+A EVL +
Sbjct: 45 LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104
Query: 60 HERAFYDKHKDVFLRQDYDESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEE 119
R YD D TP F+ V+ VF + E
Sbjct: 105 KLRLQYDS---NDFDADVPPPRIY--TPD--------------EFFEVWEPVFER----E 141
Query: 120 MEFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLRLI 179
FS+++ +P+ G S SS V FY FW +F + +T+ L + R R
Sbjct: 142 ARFSKKQ-PVPSLGPSDSSL-KEVEEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYS 199
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKER 233
E +N+ R K K + N +K LV+ +K+D R++ K+QEKE ++ ER
Sbjct: 200 EAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIK---SFKEQEKEMKKIRKWER 250
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 69.9 bits (171), Expect = 3e-13
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLGV N + +++KKAYRKLA K+HPD + E A+E+F+ I +AY VLS+ +R
Sbjct: 7 YYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ 64
Query: 64 FYDK 67
YD+
Sbjct: 65 RYDQ 68
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 67.9 bits (166), Expect = 2e-12
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
YEVL + + ++KKAYRKLA+K HPDK + E+F+ I +AYEVLS+P +R
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKI 85
Query: 65 YDKHKDVFLRQDYDESDSIDL 85
YD++ + L +D+ DL
Sbjct: 86 YDEYGEEGLEGGEQPADASDL 106
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 67.0 bits (163), Expect = 3e-12
Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLGV N + +++KKAYRKLA K+HPD N +A+++F+ +++AY+ LS+P ++A
Sbjct: 6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDV--NKAPDAEDKFKEVKEAYDTLSDPQKKA 63
Query: 64 FYDK--HKD 70
YD+ H D
Sbjct: 64 HYDQFGHTD 72
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 66.6 bits (162), Expect = 3e-12
Identities = 36/72 (50%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+L V + N E +KK+YRKLALK+HPD+N + +EA+E+F+LI +AY VLS+ +RA
Sbjct: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRA 63
Query: 64 FYDKHKDVFLRQ 75
YD++ L Q
Sbjct: 64 LYDRYGKKGLNQ 75
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 65.8 bits (160), Expect = 7e-12
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YE+LG+ + +++KKAYRK+A+K+HPDKN N +EA+ F+ +AYEVL + ++RA
Sbjct: 5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRA 63
Query: 64 FYDKHKDVFLRQDYDESDSIDLTPYFTASCYKGYGDGEKGFYSVYRD 110
YD+ T + ++G+ G GF ++ D
Sbjct: 64 QYDRFGH---------------TAFEGGGGFEGFSGGFSGFSDIFED 95
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 63.3 bits (153), Expect = 9e-11
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+YEVLG+ + +++++KKA+RKLA K+HPD+ N +A F I +A +VLSNP +RA
Sbjct: 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDR--NKAPDAASIFAEINEANDVLSNPKKRA 61
Query: 64 FYDKH 68
YDK+
Sbjct: 62 NYDKY 66
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 57.7 bits (139), Expect = 3e-09
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
+Y++LGV + DLKKAY KLA ++HPD + ++A+++F+ I AY+VL + +RA
Sbjct: 5 YYQILGVSKTASQADLKKAYLKLAKQYHPDT--TDAKDAEKKFKEINAAYDVLKDEQKRA 62
Query: 64 FYDKH-KDVFLRQDYDESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVF 112
YD+ D F Q +G G GF+ D+F
Sbjct: 63 AYDRFGHDAFQNQQ-----------------SRGGGGNHGGFHPDINDIF 95
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 56.8 bits (137), Expect = 4e-09
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPD--KNPNNLEEAKEQFQLIQQAYEVLSN 58
+K +Y ++GV + + +K AYR+LA K+HPD K P+ A+ +F+ + +A+EVLS+
Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVLSD 58
Query: 59 PHERAFYDK 67
RA YD+
Sbjct: 59 EQRRAEYDQ 67
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 299 HLFCIACNKLFKTEKAFQNHENSKKHK 325
+C+AC+K FK+E A +NH SKKHK
Sbjct: 1 QFYCVACDKYFKSENALENHLKSKKHK 27
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 54.0 bits (131), Expect = 3e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDK------NPNNLEEAKEQFQLIQQAYEVL 56
Y+VLGV + +D+++K+AYRKL + HPDK P +E AKE+ Q IQ AYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 52.3 bits (125), Expect = 2e-07
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNL----EEAKEQFQLIQQAYEVLSNPH 60
YE+LG+ + ++ D+KK YR L++K+HPDK P + E +E+++ I +AY +L++
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 61 ERAFY 65
R Y
Sbjct: 161 RRENY 165
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 50.7 bits (121), Expect = 5e-07
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +YEVLGV +++++++AYRKLA ++HPD N + +A ++ I +A +VL + +
Sbjct: 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDK 61
Query: 62 RAFYDK 67
R YD+
Sbjct: 62 RKQYDQ 67
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger. Family of C2H2-type zinc
fingers, present in matrin, U1 small nuclear
ribonucleoprotein C and other RNA-binding proteins.
Length = 35
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 300 LFCIACNKLFKTEKAFQNHENSKKHKENVA 329
+C CN F E + + H KKHK+NV
Sbjct: 4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 40.2 bits (95), Expect = 3e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 300 LFCIACNKLFKTEKAFQNHENSKKH 324
+C CN F +E ++H KKH
Sbjct: 1 FYCELCNVTFTSESQLKSHLRGKKH 25
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 38.2 bits (90), Expect = 0.007
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 176 LRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKE------ENALK 229
++ E+E KRI ++AKKE K + +++ +++N+ + +E+ E L
Sbjct: 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL 92
Query: 230 LKE----RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKE 273
KE R+ + + R++E+E ++ K LEK+ +++E + ++
Sbjct: 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and
modification].
Length = 470
Score = 37.3 bits (86), Expect = 0.011
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 261 KELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHEN 320
K + + AS K F + K+ E E ++C+ C + F K F+ H
Sbjct: 203 KMFRKVVASAPKIF---SRAEARGFGKKNGMEGAEWFPKVYCVKCGREFSRSKVFEYHLE 259
Query: 321 SKKHKENV 328
K+H +
Sbjct: 260 GKRHCKEG 267
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 37.3 bits (87), Expect = 0.011
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 15 NDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAFYDKHKDVFLR 74
N ++KAY + ++HPDK + E+ K L ++ E + + R
Sbjct: 26 NLPLMRKAYLRKCKEYHPDKGGDE-EKMKRLNSLYKKLQEGVKS--------------AR 70
Query: 75 QDYDESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGN 134
Q + DS ++ Y T + + + + + D+F EE+ S++E + P
Sbjct: 71 QSFGTQDSSEIPTYGTPEWEQWWEEFNEKWDE---DLF---CDEELSSSDDEDEPPPPSP 124
Query: 135 STSS 138
S
Sbjct: 125 PPSQ 128
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 36.7 bits (85), Expect = 0.018
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 178 LIEKENKRIRDKAKKEYNDTVKNLVEFVRK-KDKRVQNQALIKKQEKEENALKLKERRRQ 236
+IE+ K + K+E N ++ L ++ + K + L+K+QEK + L +E
Sbjct: 498 IIEQA-KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKEL-EQEMEEL 555
Query: 237 QMIDRKKEMESMKE------NEWSKFSNLEKELKDIEASVAKEFGD 276
+ +R K++E KE + ++ +ELK+ + AKE
Sbjct: 556 KERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKS 601
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 35.2 bits (81), Expect = 0.021
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 1 MKCHYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQL---IQQAYEV 55
M+ ++++LG+P N++ + L+K Y + +K+HPDK L+E ++ + + AY
Sbjct: 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDK-AKTLQEKEQNLIIASELNNAYST 59
Query: 56 LSNPHERAFY 65
L + +RA Y
Sbjct: 60 LKDALKRAEY 69
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 34.2 bits (79), Expect = 0.033
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 184 KRIRDKAKKEYNDTVKNLVEFV-----RKKDKRVQNQALIKKQEKEENALKLKERRRQQM 238
K+ + K +E + E++ RK+ +R + Q K++E+EE + K R ++
Sbjct: 3 KKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREERK 62
Query: 239 IDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEESS 298
+ +K+++ KE + E DE + + +V E+EYI+E
Sbjct: 63 QELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDK 122
Query: 299 H 299
+
Sbjct: 123 Y 123
>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General
function prediction only].
Length = 126
Score = 32.7 bits (74), Expect = 0.11
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 271 AKEFG-DEDSSYDDDSVGKSE-----DEYIEESSHLFCIACNKLFKTEKAFQNHENSKKH 324
+ FG D D +D S +S+ D + +CI C + F TEKA H+ K H
Sbjct: 21 TRLFGRDLDQIKNDLSTKESQKKLPYDPELPGLGQHYCIECARYFITEKALMEHKKGKVH 80
Query: 325 KENVAILKEQMLEEE 339
K L+E +E
Sbjct: 81 KRRAKELREVPYTQE 95
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.1 bits (79), Expect = 0.11
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 175 VLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERR 234
L +I K N + + T + +EF+ K A K ++ E A K +E
Sbjct: 373 FLSIIFKHNPELAARLAAFLELTEEE-IEFLTGSKK-----ATKKIKKIVEKAEKKREEE 426
Query: 235 RQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDS 285
+++ +KK K+ E + +KE + E E E+
Sbjct: 427 KKEK--KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.6 bits (78), Expect = 0.16
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMI 239
EKE ++ +AKKE ++ +K L + + V+ LI+ +++ A + KE+++++
Sbjct: 572 EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQ- 630
Query: 240 DRKKEMESMKENEWSKFSNL 259
K++ E +K + K+ +L
Sbjct: 631 --KEKQEELKVGDEVKYLSL 648
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 32.3 bits (74), Expect = 0.21
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNN------LEEAKEQFQLIQQAYE 54
+VLGV + + + +KKAYRKL + HPDK +E+ KE+ Q IQ+AYE
Sbjct: 115 ALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 31.1 bits (71), Expect = 0.22
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 292 EYIEE--SSHLFCIACNKLFKTEKAFQNHENSKKHK 325
Y+ E C+ C K FK+ +A + H K H
Sbjct: 41 NYLREKIHEGNECLYCGKQFKSLEALRQHMRDKGHC 76
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 32.0 bits (73), Expect = 0.24
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 6 EVLGVPLNV--NDEDLKKAYRKLALKWHPDK 34
++LG+P + N ++KAY + L++HPDK
Sbjct: 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDK 39
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 32.5 bits (74), Expect = 0.35
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 172 NRRVLRLIEKENKRIRDKAKKEY-NDTVKNLVE--FVRKKDKRVQN--QALIKKQEKEEN 226
R + ++E I D + + ++ VE +++K ++ ++K+++ EN
Sbjct: 63 PRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPEN 122
Query: 227 ALKLKERRRQQMIDRKK----EMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYD 282
+ LK+ R + +++KK ++ +S+ E+ +K + A VA F Y
Sbjct: 123 SSTLKKLERLEKLEKKKLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYG 182
Query: 283 DDSVGKS 289
VGK+
Sbjct: 183 PPGVGKT 189
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.2 bits (74), Expect = 0.41
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 172 NRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKE----ENA 227
+ L E+ KRI ++AKKE K + +++ +++ + E+E N
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL-----ERELKERRNE 77
Query: 228 LKLKERRRQQ---MIDRKKEMESMKENEWSK----FSNLEKELKDIEASVAKEFGDED 278
L+ ERR Q +DRK E KE K SN EK L + E + + ++
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR 135
Score = 29.1 bits (66), Expect = 4.6
Identities = 13/93 (13%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 181 KENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQ--ALIKKQEKEENALKLKERRRQQM 238
+E ++R + ++E + L ++ ++R+ + L +K E + + E++ +++
Sbjct: 58 EEVHKLRAELERELKERRNEL----QRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113
Query: 239 IDRKKEMESMKENEWSKFSNLEKELKDIEASVA 271
+++K ++ +E + L E ++ ++
Sbjct: 114 SNKEKNLDEKEE----ELEELIAEQREELERIS 142
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 31.4 bits (71), Expect = 0.42
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 3 CHYEV--LGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEE----AKEQFQLIQQAYEVL 56
CH+ + L ++ + L YR+LA + HPD+ + E A E+ + +AY+ L
Sbjct: 5 CHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTL 64
Query: 57 SNPHERAFY 65
+P RA Y
Sbjct: 65 KSPPRRARY 73
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 32.2 bits (74), Expect = 0.43
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 172 NRRVLRL-IEKENKRIRDKAKKEYNDTVKNLVEFVRK--KDKRVQNQALIKKQEKEENAL 228
+RR+++L IE+E KKE ++ K +E + K + + L ++ + E+ A+
Sbjct: 411 DRRIIQLEIERE------ALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAI 464
Query: 229 ----KLK---ERRRQQM--IDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDE 277
++K E+ R ++ +R+ ++ E ++ K LEK L+ EA + +E
Sbjct: 465 QGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPR 522
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 32.1 bits (72), Expect = 0.54
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 4 HYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERA 63
Y++LGV +N + +++ + Y KLA ++P K N E +F+ I +AY++L + ++
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK 632
Query: 64 FYDKH 68
Y+K
Sbjct: 633 MYNKF 637
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 30.6 bits (69), Expect = 0.60
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 19 LKKAYRKLALKWHPDKNPNNLEEAK--EQFQLIQQAYEVLSNPHERAFY 65
L+K YR+L ++HPD + E+ +Q + QAY L +P RA Y
Sbjct: 8 LRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 30.8 bits (70), Expect = 0.64
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 4 HYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQL-----IQQAYEVL 56
H+ + G+P +++ L AYR + + HPD+ +A+++ + +AY+ L
Sbjct: 8 HFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFA-AAGDAEKRVAMQWATRANEAYQTL 66
Query: 57 SNPHERAFY 65
+P +RA Y
Sbjct: 67 RDPLKRARY 75
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 30.8 bits (69), Expect = 0.87
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 185 RIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRKKE 244
RIRD+ + D +K + + Q Q +QE+EE +++ RR++ ID +++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIR-----QEQIEKARQEREELEERMEWERREEKIDERED 156
Query: 245 MESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDS 285
E + + +E++ D E + ++ E S DD +
Sbjct: 157 QEEQEREREEQ--TIEEQSDDSEHEIIEQDESETESDDDKT 195
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.3 bits (70), Expect = 1.2
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 176 LRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRR 235
+ E++ K+ + KKE + K E ++KK+ + +A K+ +EEN +K +E ++
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKK--AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 236 QQMIDRKKEMESMK-ENEWSKFSNLEKELKDIEASVAKE 273
+ D+KK E+ K E E K ++L+KE + + KE
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 29.9 bits (68), Expect = 1.2
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 4 HYEVLGVPL--NVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQL--------IQQAY 53
++ + G+P +++ + L Y++L ++HPDK N A E+ +L I AY
Sbjct: 3 YFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFAN----ASERERLLAVQQAATINDAY 58
Query: 54 EVLSNPHERAFY 65
+ L +P +RA Y
Sbjct: 59 QTLKHPLKRAEY 70
>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
Staphylococcus aureus plasmid proteins with no
characterized function.
Length = 229
Score = 30.4 bits (68), Expect = 1.4
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 181 KENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQ--ALIKKQEKEENALKLKERRRQQM 238
KEN+ IR+K K +K E + K K++ N L++++ K +A +++ + +
Sbjct: 62 KENQDIREKELKAIKSELKEATEDFQDKGKKIHNDFVDLLQEKLKHVDAEDIEDELGKDI 121
Query: 239 IDRKKEMESM 248
++E++ M
Sbjct: 122 YGVREEIDRM 131
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 29.0 bits (65), Expect = 1.4
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNN-----LEEAKE 44
Y++L + + E +++A+++L L+ HPD + + EAK+
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKD 112
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.0 bits (68), Expect = 1.7
Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 172 NRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQAL-IKKQEKEENALKL 230
+ L + R+ +E V+ +E +D ++ L ++ K+E ++
Sbjct: 19 RNSLYELRL-DLARLL-LENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQI 76
Query: 231 KERRRQ---QMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKE 273
+ R Q ++ +++ +E +K + S+L +E A +
Sbjct: 77 RARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQ 122
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 29.7 bits (66), Expect = 2.7
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 183 NKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRK 242
+R R K+ K + V+ V+ + +KD + ++ +++ K EKE + R+
Sbjct: 190 ARRFRKKSSKIEIEEVEKKVDDLLEKDMKAESVSVVLKDEKE--------------LARQ 235
Query: 243 KEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFC 302
+ + S + + L + E A+E G+E S +D VG +E E E S
Sbjct: 236 ERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEG--- 292
Query: 303 IACNKLFKTEKAFQNHENSKKHKENVAILKEQMLEEENEMNNDDDGDLSNEEYVQDSGSE 362
E+ + EN++ HKE V + + EE E +++++ + + E + D +E
Sbjct: 293 -------DKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNE 345
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.1 bits (65), Expect = 3.8
Identities = 17/98 (17%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 178 LIEKENKRIRDK---AKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERR 234
+ ++ RI+ + AKK K + + + + KQ ++E ++++
Sbjct: 59 AVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118
Query: 235 RQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAK 272
+ + +++ ++E ++ E ++ + E++ K EA+ AK
Sbjct: 119 QAEEAEKQAQLEQKQQEEQARKAAAEQK-KKAEAAKAK 155
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.0 bits (65), Expect = 3.9
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 206 RKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSKFSNLEKELKD 265
RKK ++ Q + L +KQ E+ LK E+ R ++KK+ E + K +E
Sbjct: 81 RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK-QKQAEEAAA 139
Query: 266 IEASVAKEFGDEDSSYDDDSVGKSEDE 292
A+ AK + ++ + K+ E
Sbjct: 140 KAAAAAKAKAEAEAKRAAAAAKKAAAE 166
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 28.9 bits (65), Expect = 4.5
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFV-RKKDKRVQNQALIKKQEKEENALKLKERRRQQM 238
E E DK K+E D +KN E + + +K+++ +EK+E L ++ RQ +
Sbjct: 513 EAEKNAAEDKEKREKID-LKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQAL 571
Query: 239 IDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSV 286
+ ES+K S L+K L +I V D + +DD V
Sbjct: 572 --QNDNYESIK----SLLEELQKALMEIGKEVYSSTSTTDPASNDDDV 613
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 4.6
Identities = 56/276 (20%), Positives = 96/276 (34%), Gaps = 48/276 (17%)
Query: 85 LTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEME--FSEEEMDIPNFGNSTSSYYNT 142
+ A Y K V+ +V +K E+E + + + + Y +
Sbjct: 2694 VDRVGHARHYLESEMAIKDGNPVFYNVNLKKVSSEVERLYEDRIRNTKSKDKKEPKVYRS 2753
Query: 143 VHNFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIE--KENKRIRDKAK----KEYND 196
+ S KK LK F I+ N +L L + N+ K D
Sbjct: 2754 LE---------SIKKLLEELKKFLISPVTNVLILELPQSYPGNQGYHPDVYTYILKNRAD 2804
Query: 197 TVKNL-VEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSK 255
+E+ + D+R A I + K ++ L+L R + I + KEM S E SK
Sbjct: 2805 CECRDWIEYAKFFDRREVQNAFIGNKIKGKDLLELFFNRDE--ISQIKEMFSNSEVCLSK 2862
Query: 256 FSNLEKELKDIEASVAKEFGDEDSSYDDDSV----GKSEDEYIEESSHLFCIACNKLFKT 311
N S D S+ ED I +F C + +
Sbjct: 2863 VVN-------------------QLSEDTTSMNLTRMCIEDPSIPFMYFVFLFLCKQHGRD 2903
Query: 312 EK---AFQNHENSKKHKENVAILKEQMLEEENEMNN 344
+ AF++ K N+ + ++ +EEE+E ++
Sbjct: 2904 TELAGAFEDGTGMKYGTGNINVSEQ--IEEEDEKDD 2937
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.8 bits (65), Expect = 4.7
Identities = 17/79 (21%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRV--QNQALIKKQEKEENALKL 230
+ +LR +KE +++ + ++ Y + VK L+E + + +++ + + +++ + +E+ L L
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEEL-L 278
Query: 231 KERRRQQMIDRKKEMESMK 249
KE + + +KE++ +K
Sbjct: 279 KEGFKTEAESLQKEIQDLK 297
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 28.5 bits (63), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 289 SEDEYI--EESSHLFCIACNKLFKTEKAFQNHENSKKHKENVA 329
+D Y+ + C+ C TE ++ H KKHKEN +
Sbjct: 41 MDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSS 83
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.9 bits (65), Expect = 5.1
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 179 IEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQM 238
K + K + T K KR++ K++K+ ++++ +
Sbjct: 1288 PSKRPDGESNGGSKPSSPTKKK-------VKKRLEGSLAALKKKKKSEKKTARKKKSKTR 1340
Query: 239 -IDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDS 285
S K + D ++ V ++D +DD
Sbjct: 1341 VKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.9 bits (65), Expect = 5.3
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 179 IEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALI--------KKQEKEENALKL 230
+E E +R++ ++ N+ + K+K + + + ++ +
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
Query: 231 KERRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASV 270
KE +++ +E+E + E + + LE EL +I +
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399
>gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription].
Length = 780
Score = 28.8 bits (65), Expect = 5.4
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 211 RVQNQALIKKQEKEENALKLKE-RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEAS 269
+ Q +A + E E+ L KE RR + I R+K +E + + SK S D
Sbjct: 92 KEQIEAAEELTELEDLYLPYKEKRRTRATIAREKGLEPLADLILSKPSL------DPLLE 145
Query: 270 VAKEF--GDEDSSYDDDSVGKSEDEYIEESSH 299
A +F +E S ++ + D E S
Sbjct: 146 SAADFISIEEGVSSSKLALDGARDILAERISE 177
>gnl|CDD|153375 cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase,
4,5-DOPA Dioxygenase, catalyzes the incorporation of
both atoms of molecular oxygen into
4,5-dihydroxy-phenylalanine. This subfamily is composed
of plant 4,5-DOPA Dioxygenase, the uncharacterized
Escherichia coli protein Jw3007, and similar proteins.
4,5-DOPA Dioxygenase catalyzes the incorporation of both
atoms of molecular oxygen into
4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction
results in the opening of the cyclic ring between
carbons 4 and 5 and producing an unstable seco-DOPA that
rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a
key enzyme in the biosynthetic pathway of the plant
pigment betalain. Homologs of DODA are present not only
in betalain-producing plants but also in bacteria and
archaea. This enzyme is a member of the class III
extradiol dioxygenase family, a group of enzymes which
use a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 253
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 141 NTVHNFYAFWQSFSTKKTYSWLKAFD 166
++VHN A + W FD
Sbjct: 160 SSVHNLRAL-RWGGPAPPPPWALEFD 184
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.2 bits (63), Expect = 6.3
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 210 KRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEAS 269
Q Q K Q+ E K + + ++ + ++ + K EW + + K
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAA-KQRTPK 152
Query: 270 VAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVA 329
KE E +S K E +E + +L + E + K+ +E
Sbjct: 153 HKKE-AAESASSSLSGSAKPERNVSQEEAK------KRLQEWELKKLKQQQQKREEERRK 205
Query: 330 ILKEQMLEEE 339
K+Q EEE
Sbjct: 206 QRKKQQEEEE 215
>gnl|CDD|191268 pfam05405, Mt_ATP-synt_B, Mitochondrial ATP synthase B chain
precursor (ATP-synt_B). The Fo sector of the ATP
synthase is a membrane bound complex which mediates
proton transport. It is composed of nine different
polypeptide subunits (a, b, c, d, e, f, g F6, A6L).
Length = 163
Score = 27.6 bits (62), Expect = 6.5
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 179 IEKENKRIRDKAKKEYN---DTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLK--ER 233
++K ++I+D+ + N +K +E+V+K V+ ++ + KE AL+ + ER
Sbjct: 42 LDKRIEKIQDELNQSRNLHEKALKERIEYVKKLQSLVEETKVLFEVSKETVALEAEAFER 101
Query: 234 RRQQMIDR--KKEMESMKENEWSKFSNLEKEL-KDIEASVAKEFGDEDS 279
Q + R K +++++ E S + L + +SV KE
Sbjct: 102 ELQAALYREIKSKLDTLVRKESSVRQREQDHLVNWVISSVLKELSPPQF 150
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 28.1 bits (63), Expect = 6.8
Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 179 IEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALK--LKERRRQ 236
++ E R+ + K+ K E + ++ E + + L+ ++E R +
Sbjct: 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74
Query: 237 QMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEE 296
+K E E + + K+ S+ E + + + K E E +
Sbjct: 75 IKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAEL-----MEEIEKLEKEIEDL 129
Query: 297 SSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQMLEEENE 341
+L + EK E + +E VA ++E+ E ++
Sbjct: 130 KE--------RLERLEKNLA--EAEARLEEEVAEIREEGQELSSK 164
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.6 bits (63), Expect = 7.0
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 220 KQEKEENALKLKERRRQQMIDRKKEMESMKENEWS-----------KFSNLEKELKDIEA 268
+ E+EENA K KE R ++ K+ +W K + E E E+
Sbjct: 640 ETEREENARK-KEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPES 698
Query: 269 SVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENS-KKHKEN 327
V E G Y + E+++E + + I L EK + K+H+ +
Sbjct: 699 RVVIE-GYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRWH 757
Query: 328 VAILK 332
ILK
Sbjct: 758 KKILK 762
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 28.3 bits (63), Expect = 7.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 174 RVLRLIEKENKRIRDK-AKKEYNDTVKNLVEFVRKKD----KRVQNQALIKKQEKEENAL 228
RV I ++ +RDK A +E T L +F+++K KRV + ++ E+EE A+
Sbjct: 359 RVKDAIPED---LRDKIATEEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAM 415
Query: 229 KLKE 232
+ +E
Sbjct: 416 QPEE 419
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.4 bits (63), Expect = 8.2
Identities = 19/104 (18%), Positives = 49/104 (47%)
Query: 174 RVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKER 233
+ +L E+E K + + ++ ++ +K V ++K +++ +KK EKE K +
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIE 339
Query: 234 RRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDE 277
++ + + +E E + L+++L+ +E + + E
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 27.3 bits (61), Expect = 9.2
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMI 239
E+E + I ++A++E + + + + +K EKE + + +
Sbjct: 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEIL-----RKAEKEAERERQRIISSALLE 70
Query: 240 DRKKEMESMKENEWSKFSNLEKELKDIEA 268
R+K +E+ +E S F +E++L++I +
Sbjct: 71 ARRKLLEAKEEILESVFEAVEEKLRNIAS 99
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 27.9 bits (63), Expect = 9.3
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 177 RLIEKENKRIRDKAKKE-----YNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLK 231
L+EK R + + K L + K++ + A K +KE + L+ +
Sbjct: 79 ALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDE 138
Query: 232 ERRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIE 267
+ + +++ + E +F+ L K LK
Sbjct: 139 LKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSG 174
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 27.9 bits (62), Expect = 9.6
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 174 RVLRLIEKENKRIRDK-AKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
RV I ++ + DK A +E T+ L EF+++K V + +++E+EE +
Sbjct: 361 RVKDAIPED---LYDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAA 417
Query: 233 RRRQQMIDRKKEME 246
M + E
Sbjct: 418 EAEAPMEEPVPGFE 431
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.129 0.364
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,049,665
Number of extensions: 1879894
Number of successful extensions: 3155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2803
Number of HSP's successfully gapped: 424
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.0 bits)