RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6717
(373 letters)
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 104 bits (262), Expect = 5e-28
Identities = 35/68 (51%), Positives = 54/68 (79%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YE+L VP + + +D+KKAYR+ AL+WHPDKNP+N E A+++F+ + +AYEVLS+ H
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 61 ERAFYDKH 68
+R YD++
Sbjct: 61 KREIYDRY 68
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 101 bits (254), Expect = 5e-27
Identities = 40/68 (58%), Positives = 56/68 (82%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YEVLGV + + ED+KKAYRKLAL+WHPDKNP+N EEA+++F+L+ +AYEVLS+
Sbjct: 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 61 ERAFYDKH 68
+R+ YD+
Sbjct: 68 KRSLYDRA 75
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 100 bits (250), Expect = 1e-26
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
M +YEVL VP + E +KKAYRKLALKWHPDKNP N EEA+ +F+ + +AYEVLS+
Sbjct: 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 61 ERAFYDK 67
+R YD+
Sbjct: 68 KRDIYDR 74
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 96.7 bits (241), Expect = 3e-25
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
+K V+ + + + KK R+L LKWHPDKNP N + A E F+ +Q L
Sbjct: 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE--- 71
Query: 61 ERAFYDKHKDVFLRQDY 77
++AF D++ D R+ +
Sbjct: 72 KQAFLDQNADRASRRTF 88
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 99.2 bits (247), Expect = 1e-24
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 26/217 (11%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
++ Y +LGV + ++++A++KLALK HPDKNPNN A F I +AYEVL +
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDED 59
Query: 61 ERAFYDKHKDVFLRQDYDESDSIDLTPYFTASCYKGYGDGEKGFYSVYRDVFIKIAVEEM 120
R YDK+ + L + Y+ + F D I
Sbjct: 60 LRKKYDKYGEKGLEDNQGGQ-------------YESWSYYRYDFGIYDDDPEIITLERRE 106
Query: 121 EFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLR--- 177
+ F N S + H+ W+ F+ K+ L+ +N +R + R
Sbjct: 107 FDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA-KEVDGLLRIGAVNCGDDRMLCRMKG 165
Query: 178 ------LIEKENKRIRDKAKKEYNDTVKNLVEFVRKK 208
L + K + + ++LV F +
Sbjct: 166 VNSYPSLFIFRSGMAA--VKYNGDRSKESLVAFAMQH 200
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 94.8 bits (236), Expect = 3e-24
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y VLG+ N +D+KK+YRKLALK+HPDKNP+N EA ++F+ I A+ +L++ +R
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNI 78
Query: 65 YDKH 68
YDK+
Sbjct: 79 YDKY 82
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 100 bits (250), Expect = 6e-24
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
+K +Y +LGV + + +K AYR+LA K+HPD + N +A+ +F+ + +A+EVL +
Sbjct: 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQ 84
Query: 61 ERAFYD 66
RA YD
Sbjct: 85 RRAEYD 90
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 95.3 bits (237), Expect = 7e-24
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNL-----EEAKEQFQLIQQAYEVL 56
K Y +LG + N DLK+ Y+KL L +HPDK ++ EE ++F I QA+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 57 SNPHERAFYD-KHKDVFLRQDYDESDSIDL 85
N + YD + + LR + L
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYL 99
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 92.3 bits (230), Expect = 1e-23
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y+ LG+ +DE++K+AYR+ AL++HPDKN A+E+F+ I +AY+VLS+P +R
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 65 YDK 67
+D+
Sbjct: 64 FDR 66
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 92.4 bits (230), Expect = 2e-23
Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGV + N+++LKK YRK ALK+HPDK + E+F+ I +A+E+L++P +R
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREI 66
Query: 65 YDK 67
YD+
Sbjct: 67 YDQ 69
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 92.1 bits (229), Expect = 3e-23
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGVP +K AY + +HPD+N + EA E+F I QAY VL + R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRK 78
Query: 65 YDK 67
YD+
Sbjct: 79 YDR 81
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 91.5 bits (228), Expect = 5e-23
Identities = 28/64 (43%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
YE+LGV + +++KAY++LA+K+HPD+N + +EA+ +F+ I++AYEVL++ +RA
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 65 YDKH 68
YD++
Sbjct: 65 YDQY 68
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 89.2 bits (222), Expect = 1e-22
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y+VLGV + +D +LKKAYRK+ALK+HPDKNP+ EQF+ I QAYEVLS+ +R
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEKKRQI 66
Query: 65 YDKH 68
YD+
Sbjct: 67 YDQG 70
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 89.8 bits (223), Expect = 3e-22
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y +LG + E + ++ AL+ HPDK+P N +A E FQ +Q+A E+L+N RA
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRAR 81
Query: 65 YDK 67
YD
Sbjct: 82 YDH 84
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 86.5 bits (215), Expect = 1e-21
Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGVP N + +++KKAY +LA K+HPD N ++ +AKE+F + +AYEVLS+ +R
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 65 YD 66
YD
Sbjct: 69 YD 70
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 86.7 bits (215), Expect = 2e-21
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNN-----LEEAKEQFQLIQQAYEVLSNP 59
Y +LG + N DLK+ Y+KL L +HPDK + +EE ++F I QA+++L N
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 60 HERAFYD 66
+ YD
Sbjct: 79 ETKKKYD 85
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 86.3 bits (214), Expect = 2e-21
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y VLGV + D+KKAY+KLA +WHPDKN + A+++F I +AYE+LSN +R
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTN 77
Query: 65 YDK 67
YD
Sbjct: 78 YDH 80
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 85.8 bits (213), Expect = 3e-21
Identities = 28/64 (43%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y++LGVP + ++ +KKA+ KLA+K+HPDKN + +A+ +F+ I +AYE LS+ + R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKE 67
Query: 65 YDKH 68
YD
Sbjct: 68 YDTL 71
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 85.4 bits (212), Expect = 4e-21
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
YE+LGV +DEDLKKAYR+LALK+HPDKN A E F+ I AY VLSNP +R
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 65 YDKH 68
YD+
Sbjct: 68 YDQF 71
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 84.8 bits (210), Expect = 2e-20
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 5 YEVLGVPLNVNDED-LKKAYRKLALKWHPDKNPNN--LEEAKEQFQLIQQAYEVLSNPHE 61
Y+VL V D+ L KAYR LA K HPD+ N A+E+F++I AYE L +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 62 RAFYDKHKD 70
+ YD + D
Sbjct: 78 KTNYDYYLD 86
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 79.0 bits (195), Expect = 1e-18
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +++LGV + +++ KAYRKLA+ HPDK +++ F+ + A L +
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTALLKNIK 84
Query: 62 RAFYD 66
Sbjct: 85 SGPSS 89
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 78.8 bits (194), Expect = 1e-17
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59
++LG+ + N ++KAY K ++HPDK + +E+ + + Y+ + +
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDG 65
Query: 60 HERAFYDKHKDVFLRQDYDESDSIDLTPYFTASCYKGY 97
+ A + D E + L P A K +
Sbjct: 66 VKYAHQPDFGGFW---DATEVFASSLNPGVDAIYCKQW 100
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 73.3 bits (180), Expect = 2e-16
Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59
++LG+ + N ++KAY K ++HPDK + +E+ + + Y+ + +
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDG 62
Query: 60 HERAFYDKHKDVFLRQDYDESDSIDLTPYF 89
+ A + + + + ++
Sbjct: 63 VKYAHQPDFGGFWDATEIPTYGTDEWEQWW 92
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 79.0 bits (194), Expect = 4e-16
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHERAF 64
Y +LGV + ++++A++KLALK HPDKNPNN A F I +AYEVL + R
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 65 YDKH 68
YDK+
Sbjct: 83 YDKY 86
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 76.3 bits (188), Expect = 2e-15
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDK--NPNNLEEAKEQFQLIQQAYEVLSNP 59
+ +Y++LGV N +++ KAYRKLAL+WHPD N ++A+++F I A EVLS+P
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 60 HERAFYD 66
R +D
Sbjct: 442 EMRKKFD 448
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 65.7 bits (160), Expect = 5e-13
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 HYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEE----AKEQFQLIQQAYEVLS 57
++E+ G+P ++ L +R L ++HPD E A +Q I AY+ L
Sbjct: 6 YFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLK 65
Query: 58 NPHERAFYD 66
+P RA Y
Sbjct: 66 DPLRRAEYL 74
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 64.2 bits (156), Expect = 1e-12
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 4 HYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEE----AKEQFQLIQQAYEVLS 57
++ + G+P ++ + L ++ L ++HPDK + + A +Q I QA++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 58 NPHERAFYD 66
+P RA Y
Sbjct: 63 HPLMRAEYL 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 62.6 bits (151), Expect = 7e-12
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPN--NLEEAKEQFQLIQQAYEVLSNPH 60
++ +G+ V E +KK YRK L HPDK + AK F + A+ N
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177
Query: 61 ERAFY 65
++ Y
Sbjct: 178 QKPLY 182
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 62.3 bits (151), Expect = 9e-12
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 1 MKCHYEVLGVPL-------NVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAY 53
YE+ ++ L+K YR+L + HPD EQ + QAY
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAY 65
Query: 54 EVLSNPHERAFYDKH 68
L +P R+ Y
Sbjct: 66 HTLKDPLRRSQYMLK 80
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 58.2 bits (140), Expect = 4e-10
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 4 HYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKE----QFQLIQQAYEVLS 57
++ ++ V+ L+ Y++L HPD + K+ L+ AY+ L
Sbjct: 45 YFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLL 104
Query: 58 NPHERAFYD 66
P R Y
Sbjct: 105 APLSRGLYL 113
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 52.6 bits (126), Expect = 2e-09
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 5 YEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHER 62
E+L +P + +++AY++ +L HPDK ++ Q + +
Sbjct: 14 LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-----ALMQELNSLWGTFKTEVYN 68
Query: 63 AFYD 66
+
Sbjct: 69 LRMN 72
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 53.1 bits (127), Expect = 3e-09
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEE--AKEQFQLIQQAYEVLSN 58
++ +G+ V E +KK YRK L HP K E AK F + A+ N
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 51.5 bits (123), Expect = 1e-08
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 3 CHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEE------AKEQFQLIQQAYEVL 56
++ + + + ++K+Y++ L HPDK A++ F+L+Q+A++
Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100
Query: 57 SN 58
+
Sbjct: 101 NT 102
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 47.3 bits (113), Expect = 1e-07
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 5 YEVLGV-PLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHER 62
++L + + + LK+ +RK+ L HPDK + I +A + L
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-----FLATKINEAKDFLEKRGIS 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.5 bits (121), Expect = 7e-07
Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 12/207 (5%)
Query: 148 AFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKK---EYNDTVKNLVEF 204
F + + +K Y ++ I + R + K +R+ ++ V +
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 205 VRKKDKRVQNQALI--KKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSKFSNLEKE 262
R V Q ++E LK++ R ++ +E+ K KE
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 263 LKDIEASVAK---EFGDEDSSY--DDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQN 317
K + + + E D + + SE+E + +++ ++ K K
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-AKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 318 HENSKKH-KENVAILKEQMLEEENEMN 343
+ KK +E K + + +E+
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 33.2 bits (76), Expect = 0.18
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMI 239
+ E R+ ++ K + V +L E + K K + Q +K+ EE A K K Q +
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH-QTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 240 DRKKEMESMKENEWSKFSNLEKELKDIEASVAKE 273
+ K++ +K + L + + D + +
Sbjct: 1027 ELKEQNTLLKT----EKEELNRRIHDQAKEITET 1056
Score = 30.8 bits (70), Expect = 0.85
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 176 LRLIEKENKRIRDKAK---KEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
LR+ E+E K ++ +E K L + + + K ++ A K E E+ +LKE
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQ-TQTEKKTIEEWADKYKHETEQLVSELKE 1030
Query: 233 RR---RQQMIDRKKEMESM-KENEWSKFSNLEKELKDIEASVAKE 273
+ + + + + + KE + L +E K +E + E
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 45.5 bits (107), Expect = 2e-06
Identities = 13/64 (20%), Positives = 23/64 (35%)
Query: 270 VAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVA 329
+ +E + S+ D + C+AC + F + H SK HK+ +
Sbjct: 21 IHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLK 80
Query: 330 ILKE 333
L
Sbjct: 81 QLSV 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 34/219 (15%), Positives = 59/219 (26%), Gaps = 82/219 (37%)
Query: 96 GYGDGEKGFYSVYRDVFIK----IAVEEME---FSEEEMD-IPNFGNSTSSYYNTVHNFY 147
Y D SV+ D F+ V++M S+EE+D I ++ S
Sbjct: 17 QYKD----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL------R 66
Query: 148 AFW----------QSF---STKKTYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKKEY 194
FW Q F + Y +L K E
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLM------------------------SPIKTEQ 102
Query: 195 NDTVKNLVEFVRKKDKRVQN--QALIKKQ---EKEENALK--LKERRRQQMID------- 240
++ ++D R+ N Q K + L+ L E R + +
Sbjct: 103 RQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 241 ----------RKKEMESMKENE--WSKFSNLEKELKDIE 267
+++ + + W N +E
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Score = 40.6 bits (94), Expect = 8e-04
Identities = 70/474 (14%), Positives = 131/474 (27%), Gaps = 134/474 (28%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNL--EEAKEQFQL---IQQAY-- 53
+ Y+ + L+V ++ K D + L EE +
Sbjct: 14 HQYQYKDI---LSVFEDAFVD---NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 54 -EVLSNPHERAFYDKHKDVFLRQDYD---------ESDSIDLTPYFTASCYKGYGDGEKG 103
L + E ++V LR +Y + +T + + Y D +
Sbjct: 68 FWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 104 F--YSVYR-DVFIKIAVEEMEFSEEE------MDIPNFGNST-------SSYYNTVHNFY 147
F Y+V R ++K+ +E + + G + S +F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 148 AFWQSFSTKKTYS----WLKAFDINMAPN--------RRVLRLIEKENKRIRDK-AKKEY 194
FW + + L+ + PN + I +R K Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 195 N------DTV--KNLVE-F-------VRKKDKRVQNQALIKKQEK-----------EENA 227
V F + + K+V + +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 228 LKL---------KERRRQ---------QMI-DRKKEMESMKENEWSKFSNLEKELKDIEA 268
L ++ R+ +I + ++ + +N W K N +K IE+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-W-KHVNCDKLTTIIES 361
Query: 269 SVAK-EFGDEDSSYDDDSVGKSEDEYIEESSHLFCI------------ACNKLFKTEKAF 315
S+ E + +D SV +I + L + NKL K
Sbjct: 362 SLNVLEPAEYRKMFDRLSV-FPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 316 QNHENS-----------KKHKENVAILKEQMLEEENEMNNDDDGDLS---NEEY 355
+ + S K EN L +++ N D DL ++Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 38.3 bits (88), Expect = 0.005
Identities = 33/298 (11%), Positives = 88/298 (29%), Gaps = 79/298 (26%)
Query: 6 EVLGVPLNVNDEDLKKAYRKLALKWHP----------DKNPNNLE-----EAKEQFQLIQ 50
+L L+ +DL + L +P + + +I+
Sbjct: 305 SLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 51 QAYEVLSNPHERAFYDK----HKDV--------FLRQDYDESDSIDLTPYF-TASCYKGY 97
+ VL R +D+ + D +SD + + S +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 98 GDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGNSTSSYYNTVHNF-------YAFW 150
++ S+ +++++ V+ I + N ++ + + Y +
Sbjct: 419 KQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYS 475
Query: 151 ------------QSFST-KKTY---SWLKAFDINMAPNRR-------VLRLIEKENKRIR 187
+ + + + +L+ + + L+ ++ I
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 188 DKAKKEYNDTVKNLVEFVRK--------KDKRVQNQALIKKQEKEENALKLKERRRQQ 237
D +Y V +++F+ K K + AL ++E + ++ Q+
Sbjct: 536 DN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL---MAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-04
Identities = 49/353 (13%), Positives = 87/353 (24%), Gaps = 155/353 (43%)
Query: 40 EEAKEQFQLIQQAYE------VLSNPHERAFY-DKHKDVFLRQDYDESDSIDLTPYFTAS 92
A F+ Y V++NP + K +R++Y A
Sbjct: 1647 NRADNHFK---DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS------------AM 1691
Query: 93 CYKGYGDGEKGFYSVYRDVFIKIAVEEMEFSEEEMDIPNFGNSTSSYYNTVHNFYAFWQS 152
++ DG+ +++++ + + ++T T Q
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL------SATQ---FT--------QP 1734
Query: 153 FSTKKTYSWLKA-FDINMAPNRRVLRLIEKENKRIRDKAKK-----EYNDTVKNLVEFVR 206
A + A ++ + D EY
Sbjct: 1735 -----------ALTLMEKA----AFEDLKSKGLIPADATFAGHSLGEYA----------- 1768
Query: 207 KKDKRVQNQAL--------IKKQEKEENALKLKERR---RQQMIDRKKEMESMKENEWSK 255
AL I E+ +++ R Q + R + S
Sbjct: 1769 ---------ALASLADVMSI------ESLVEVVFYRGMTMQVAVPRDELGRSN------- 1806
Query: 256 FSNLEKELKDIEA----SVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKT 311
+ A VA F E Y + VGK +E I N +
Sbjct: 1807 --------YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-------IV-N--Y-- 1846
Query: 312 EKAFQNHENS---------------------KKHKENVAILKEQM-LEEENEM 342
N EN K K ++ L++ + LEE
Sbjct: 1847 -----NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 41.0 bits (95), Expect = 4e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 289 SEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQMLEE 338
E+ ++C C++ FKT F++H K HK+N + + + E
Sbjct: 282 CRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSE 331
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 38.7 bits (90), Expect = 0.003
Identities = 14/100 (14%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
L +E + K+E + + + R +++ ++Q L +++K + + E
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEA--RIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 233 RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAK 272
+ ++ +++++ K K +E ++ +E K
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 37.9 bits (88), Expect = 0.006
Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 11/198 (5%)
Query: 157 KTYSWLKAFDINMAPNRRVLRLIEKENKRIRDKAKK---EYNDTVKNL-VEFVRKKDKRV 212
+ ++A D + + + E E K + K + E N + L E +
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 213 QNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAK 272
L K+++ E L E R ++ +R +++++ K+ + +LE++L++ EA+ K
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 273 EFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILK 332
+ D + K ED+ + NKL K K + + K
Sbjct: 974 L--QLEKVTADGKIKKMEDDILIMEDQN-----NKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 333 EQMLEEENEMNNDDDGDL 350
+ L + + +L
Sbjct: 1027 AKNLTKLKNKHESMISEL 1044
Score = 34.0 bits (78), Expect = 0.095
Identities = 16/95 (16%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
++ R +E E+ + ++ E + L + KK++ + QA + + E E +
Sbjct: 1059 EKIKRKLEGESSDLHEQIA-ELQAQIAELKAQLAKKEE--ELQAALARLEDETSQKNNAL 1115
Query: 233 RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIE 267
++ +++ +++ E+E + + EK+ +D+
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Score = 29.8 bits (67), Expect = 1.7
Identities = 29/190 (15%), Positives = 69/190 (36%), Gaps = 18/190 (9%)
Query: 179 IEKENKRIRDKAKK------EYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
+ KE K + ++ E + KNL + K + + L + +KEE + + E
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE--LEVRLKKEEKSRQELE 1059
Query: 233 RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVA---KEFGDEDSSYDDDSVGKS 289
+ ++++ ++ ++ + L+ +L E + DE S ++
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 290 E-DEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQMLEEENEMNNDDDG 348
E + +I + K EK ++ E + LK ++ + + +
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLS------EELEALKTELEDTLDTTATQQEL 1173
Query: 349 DLSNEEYVQD 358
S+ + D
Sbjct: 1174 RGSDYKDDDD 1183
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 34.6 bits (78), Expect = 0.016
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 271 AKEFGDEDSSYDDDSVGKSE-DEYIEESSHLF----CIACNKLFKTEKAFQNHENSKKHK 325
A EFG+ D+ D VGK + I E+SH+F C C+ + +E H S+KH
Sbjct: 1 ADEFGNGDAL--DLPVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHA 58
Query: 326 ENV 328
V
Sbjct: 59 NKV 61
Score = 33.0 bits (74), Expect = 0.057
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 275 GDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334
EDS + E C CN F + ++H K H +N+ L+EQ
Sbjct: 69 QGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLR-LREQ 127
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.14
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 9/27 (33%)
Query: 260 EK-ELKDIEASVAKEFGDEDSSYDDDS 285
EK LK ++AS+ Y DDS
Sbjct: 18 EKQALKKLQASLKL--------YADDS 36
Score = 28.0 bits (61), Expect = 3.6
Identities = 6/14 (42%), Positives = 9/14 (64%), Gaps = 2/14 (14%)
Query: 219 KKQE--KEENALKL 230
+KQ K + +LKL
Sbjct: 18 EKQALKKLQASLKL 31
Score = 26.8 bits (58), Expect = 9.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 151 QSFSTKKTYSWLKAFDINMAPNRRVLRL---IE 180
Q+ KK + LK + + AP L + +E
Sbjct: 20 QAL--KKLQASLKLYADDSAP---ALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.31
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 210 KRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKE------NEWSKFSN--LEK 261
R+ + ++ +EE +L+E K + +E EW++ + +EK
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAAS----KVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 262 ELKDIEASVAKEFGDEDSSYDDDSV 286
+ + K F + D D +
Sbjct: 134 NKINNRIA-DKAFYQQP---DADII 154
Score = 30.9 bits (69), Expect = 0.42
Identities = 10/91 (10%), Positives = 35/91 (38%), Gaps = 29/91 (31%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMI 239
E++ KR+++ + ++ + +A K++ EE +R+ + +
Sbjct: 92 EEQRKRLQELDAAS------------KVMEQEWREKA---KKDLEE-----WNQRQSEQV 131
Query: 240 DRKKEMESMKENEWSKFSNLEKELKDIEASV 270
++ K + + + + + +A +
Sbjct: 132 EKNK--INNRIAD-------KAFYQQPDADI 153
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 31.9 bits (73), Expect = 0.34
Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 241 RKKEMESMKEN----EWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDS---------VG 287
+K + +K + + + S + +++ +F + + G
Sbjct: 289 KKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAPKALEELLSKG 348
Query: 288 KSEDEYIEESSHLFCIAC------NKLFKTEKAFQNHENSKKHKENVAILKEQMLEEE 339
++ + +++ +H C C N + EK ++ H S++HK N+ Q E+
Sbjct: 349 ETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADFEK 406
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing,
spliceosome, RNA-binding domain, SM fold, finger, RNA
recognition motif, 5' splice site; 5.49A {Homo sapiens}
PDB: 1uw2_A 2vrd_A
Length = 77
Score = 28.8 bits (64), Expect = 0.53
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 301 FCIACNKLFKTEKAF--QNHENSKKHKENVAILKEQMLEEE 339
+C C+ + + H + +KHKENV + +EE+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQ 45
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 29.7 bits (66), Expect = 0.63
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 258 NLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLF-CIACNKLFKTEKAFQ 316
N +D S S+ + E + E++ + C+ C F++ +
Sbjct: 40 NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK--EDAQKVLKCMYCGHSFESLQDLS 97
Query: 317 NHENSKKHKENV 328
H KH + V
Sbjct: 98 VHMIKTKHYQKV 109
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.4 bits (72), Expect = 0.64
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 172 NRRVLRL-IEKENKRIRDKAKKEYNDTVKNLVEFVRK--KDKRVQNQALIKKQEKEENAL 228
R+ L+L IE+E KKE + + ++ + + L + E+E L
Sbjct: 407 ERKKLQLEIERE------ALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL 460
Query: 229 ----KLKE-----RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKE 273
+ + RR ++ +R+ ++ E + + LE E++ + +
Sbjct: 461 RKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGA 514
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 29.9 bits (66), Expect = 1.6
Identities = 13/132 (9%), Positives = 43/132 (32%), Gaps = 23/132 (17%)
Query: 196 DTVKNLVEFV------RKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMK 249
+ N+ + + R + L+ + + K + + M ++++
Sbjct: 720 EYSGNVTKMIQVRGRGRAAGSKC---ILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWD 776
Query: 250 ENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLF 309
E K++ +++ ++ D + + + +E +L C C
Sbjct: 777 EET------FAKKIHNLQ--------MKERVLRDSRRKEIKPKVVEGQKNLLCGKCKAYA 822
Query: 310 KTEKAFQNHENS 321
+ + ++S
Sbjct: 823 CSTDDIRIIKDS 834
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.8 bits (66), Expect = 1.7
Identities = 13/108 (12%), Positives = 33/108 (30%)
Query: 166 DINMAPNRRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEE 225
+ R L I + ++ R++ Q ++ + E E+
Sbjct: 642 SVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701
Query: 226 NALKLKERRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKE 273
+L E M + ++ + +E E ++A + +
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 29.6 bits (67), Expect = 2.0
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 176 LRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRV---QNQALIKKQEKEENALKLKE 232
+ +E ++ + + N V + ++ Q + E +N L +
Sbjct: 935 CQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAEL 994
Query: 233 RRRQQMIDRKKEME 246
R Q++ D
Sbjct: 995 ERLQKIEDLHHHHH 1008
Score = 27.7 bits (62), Expect = 9.0
Identities = 6/65 (9%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 179 IEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQA------LIKKQEKEENALKLKE 232
+ ++ + + + F ++ V++ A L+ + E+ + L
Sbjct: 946 LLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
Query: 233 RRRQQ 237
Sbjct: 1006 HHHHH 1010
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.2 bits (64), Expect = 2.9
Identities = 13/80 (16%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVE-FVRKKDKRVQNQALIKKQEKEENALKLK 231
++L ++++N+++ ++ ++ Y + +K L E + + ++ Q + +E LK
Sbjct: 503 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 562
Query: 232 ERRRQQMIDRKKEMESMKEN 251
E +++ K E++ ++
Sbjct: 563 EGFQKESRIMKNEIQDLQTK 582
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I,
microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Length = 262
Score = 28.6 bits (63), Expect = 3.4
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 129 IPNFGNSTSSYYNTVHNFYAFWQSFSTKKTYSWLKAFDINMAPNRRVLRLIEKENKRIR 187
I N + V+NF+ + +W+ D N P + L +
Sbjct: 149 IAMRNNDAPALVEEVYNFFRD-SRDPVHQALNWMILGDFNREPADLEMNLTVPVRRASE 206
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 52 AYEVLSNPHERA--FYDKHKDVFLRQDYDESDSID 84
E LS + F D +D F+RQ +E+ +I+
Sbjct: 398 GKEALSERDTKFLEFADLFEDKFVRQGRNENRTIE 432
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 4.9
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 187 RDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEEN-----ALKLKERRRQQMIDR 241
R+ K NL + + +V ++++ + + L L ++ ++D
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK----LVDT 59
Query: 242 KKEMESMKENEWSKFSN 258
+ E W FSN
Sbjct: 60 RSE--------WRTFSN 68
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 27.6 bits (61), Expect = 5.0
Identities = 12/102 (11%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 173 RRVLRLIEKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKE 232
+ + + E++ + I ++A+++ + K + +I++ + + K +
Sbjct: 9 QEINKEAERKIEYILNEARQQAEKIKEEARRNAEAK-----AEWIIRRAKTQAELEKQRI 63
Query: 233 RRRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEF 274
++ R+K + +E S +++ L+ + E
Sbjct: 64 IANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFES 105
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 27.7 bits (60), Expect = 6.3
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 1/106 (0%)
Query: 234 RRQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEFGDEDSSYDDDSVGKSEDEY 293
R + + K E+ + + L+ + + ++ + D V K DE
Sbjct: 241 RAEGKVSDAKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRDEK 300
Query: 294 IEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQMLEEE 339
C KLF + H KH E V L ++ EE
Sbjct: 301 YGWKYGCGAKGCTKLFHAAEFVYKHLK-LKHTELVTELTTKVREEL 345
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 27.8 bits (62), Expect = 7.1
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 8 LGVPLN-VNDEDLKKAYRKL 26
GV + + D+ +A +KL
Sbjct: 189 DGVTKDKLYPIDMDRALKKL 208
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 27.7 bits (61), Expect = 8.3
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 200 NLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMIDRKKEMESMKENEWSKFSNL 259
N EFV+K +A + + + + + ++K + + E+
Sbjct: 629 NFTEFVKKCPAA---KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS 685
Query: 260 EKELKDIEASVAK 272
+ ++ DI +
Sbjct: 686 KPQITDINFQCSL 698
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 26.6 bits (59), Expect = 8.6
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 6 EVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQ 47
EV+ + + + ED K Y K+ P ++ +E F
Sbjct: 64 EVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.364
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,714,127
Number of extensions: 345103
Number of successful extensions: 1059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 175
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)