RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6717
(373 letters)
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 66.5 bits (162), Expect = 2e-14
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNL--EEAKEQFQLIQQAYEVLSNP 59
+ ++ +G+ V E +KK YRK L HPDK + AK F + A+ N
Sbjct: 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 92
Query: 60 HERAFY 65
++ Y
Sbjct: 93 GQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 64.7 bits (157), Expect = 7e-14
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKE-----QFQLIQQAYEVL 56
K Y +LG + N DLK+ Y+KL L +HPDK ++ +F I QA+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 57 SNPHERAFYDKHKD 70
N + YD +
Sbjct: 76 GNEETKKKYDLQRS 89
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 63.5 bits (154), Expect = 1e-13
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MKCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPH 60
+K V+ + + + KK R+L LKWHPDKNP N + A E F+ +Q L
Sbjct: 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK-- 72
Query: 61 ERAFYDKHKDVFLRQDY 77
+AF D++ D R+ +
Sbjct: 73 -QAFLDQNADRASRRTF 88
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 60.8 bits (147), Expect = 9e-13
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 4 HYEVLGVP--LNVNDEDLKKAYRKLALKWHPDKNPNNLEEAK----EQFQLIQQAYEVLS 57
++ + G+P ++ + L ++ L ++HPDK + + + +Q I QA++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 58 NPHERAFYD 66
+P RA Y
Sbjct: 63 HPLMRAEYL 71
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 59.4 bits (143), Expect = 4e-12
Identities = 29/67 (43%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
K +Y+ LG+ +DE++K+AYR+ AL++HPDKN A+E+F+ I +AY+VLS+P +
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRK 60
Query: 62 RAFYDKH 68
R +D++
Sbjct: 61 REIFDRY 67
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 58.1 bits (140), Expect = 8e-12
Identities = 28/67 (41%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 2 KCHYEVLGVPLNVNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNPHE 61
+ +YE+LGV + +++KAY++LA+K+HPD+N + +EA+ +F+ I++AYEVL++ +
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQK 61
Query: 62 RAFYDKH 68
RA YD++
Sbjct: 62 RAAYDQY 68
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 57.0 bits (138), Expect = 1e-11
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 276 DEDSSYDDDSVGKSEDEYIEESSHLFCIACNKLFKTEKAFQNHENSKKHKENVAILKEQM 335
D ++ +D D G C+AC + F + H SK HK+ + L +
Sbjct: 1 DPNAEFDPDLPG---------GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP 51
Query: 336 LEEE 339
+E
Sbjct: 52 YSQE 55
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 52.7 bits (126), Expect = 7e-10
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59
+ E+L +P + +++AY++ +L HPDK ++ Q + +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-----ALMQELNSLWGTFKTE 65
Query: 60 HERAFYD 66
+
Sbjct: 66 VYNLRMN 72
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 41.3 bits (96), Expect = 2e-05
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 2 KCHYEVLGVPLN--VNDEDLKKAYRKLALKWHPDKNPNNLEEAKEQFQLIQQAYEVLSNP 59
++LG+ + N ++KAY K ++HPDK + E+ + + Y+ + +
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDG 62
Query: 60 HERAFYDKHKDVFLRQDYDESDSIDLTPYF 89
+ A + + + + ++
Sbjct: 63 VKYAHQPDFGGFWDATEIPTYGTDEWEQWW 92
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 72
Score = 33.0 bits (75), Expect = 0.006
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 271 AKEFGDEDSSYDDDSVGKSE-DEYIEESSHLF----CIACNKLFKTEKAFQNHENSKKHK 325
A EFG+ D+ VGK + I E+SH+F C C+ + +E H S+KH
Sbjct: 1 ADEFGNGDALDL--PVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHA 58
Query: 326 ENV 328
V
Sbjct: 59 NKV 61
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 55
Score = 29.1 bits (65), Expect = 0.096
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 301 FCIACNKLFKTEKAFQNHENSKKHKENVAILKEQ 334
C CN F + ++H K H +N+ L+EQ
Sbjct: 23 CCPVCNMTFSSPVVAESHYIGKTHIKNLR-LREQ 55
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 25.9 bits (57), Expect = 1.6
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 301 FCIACNKLFKTEKAF--QNHENSKKHKENVAILKEQMLEEE 339
+C C+ + + H + +KHKENV ++ +EE+
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQ 45
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.3 bits (60), Expect = 3.2
Identities = 7/83 (8%), Positives = 24/83 (28%)
Query: 180 EKENKRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQMI 239
++ A+ + + + + + A L + R I
Sbjct: 196 ATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARI 255
Query: 240 DRKKEMESMKENEWSKFSNLEKE 262
+ ++ E + ++L++
Sbjct: 256 AQLRQQTFTAPGEAIRAASLDRG 278
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 25.2 bits (55), Expect = 4.0
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 184 KRIRDKAKKEYNDTVKNLVEFVRKKDKRVQNQALIKKQEKEENALKLKERRRQQM 238
+ R++ KK++ D N EF +K +R + + +K + E+ A K R ++M
Sbjct: 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 68
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.6 bits (56), Expect = 4.2
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 163 KAFDINMAPNRRVLRLIEKENKRIRD 188
F + + RV+R+ K KR+++
Sbjct: 17 ITFQLELVGLERVVRISAKPTKRLQE 42
>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 24.5 bits (53), Expect = 5.3
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 301 FCIACNKLFKTEKAFQNHENSKKH-----------KENVAILKEQMLEE 338
C+ CN L K A H N K H K N + EQ + +
Sbjct: 8 VCVECNFLTKRYDALSEH-NLKYHPGEENFKLTMVKRNNQTIFEQTIND 55
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 25.7 bits (56), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 43 KEQFQLIQQAYEVLSNPHERAFYDK 67
+EQF+ ++Q YE+ +P + F D
Sbjct: 5 EEQFKQVRQLYEINDDPKRKEFLDD 29
>d2gnxa1 a.246.3.1 (A:123-294) Hypothetical protein BC048403 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 172
Score = 25.6 bits (56), Expect = 8.3
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 235 RQQMIDRKKEMESMKENEWSKFSNLEKELKDIEASVAKEF 274
R ++ D ++M ++ ++ L L I + F
Sbjct: 14 RMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRF 53
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 25.9 bits (56), Expect = 9.9
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 5 YEVLGVPLNVNDEDLKKAYRKLALKWHPDKN 35
+ + +N +++ KL + D+
Sbjct: 280 FRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 310
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.364
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,423,797
Number of extensions: 70129
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 59
Length of query: 373
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,213,086
Effective search space: 346942596
Effective search space used: 346942596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.1 bits)