BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6719
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 83.2 bits (204), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 25 YGFYP-QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF + +SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L
Sbjct: 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINL 498
Query: 84 VEGKPNGLLCVLDDQAK 100
+E K G+L +LD++ K
Sbjct: 499 IEAK-MGVLDLLDEECK 514
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 82.4 bits (202), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 25 YGFYP-QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF + +SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L
Sbjct: 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINL 498
Query: 84 VEGKPNGLLCVLDDQAK 100
+E K G+L +LD++ K
Sbjct: 499 IEAK-MGVLDLLDEECK 514
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI+W I+F D +C+ L+E KP G
Sbjct: 472 NSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMG 530
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 531 ILSILEEE 538
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI+W I+F D +C+ L+E KP G
Sbjct: 471 NSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMG 529
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 530 ILSILEEE 537
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 25 YGFYP-QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF + +SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L
Sbjct: 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINL 498
Query: 84 VEGKPNGLLCVLDDQAK 100
+E K G+L +LD++ K
Sbjct: 499 IEAK-MGVLDLLDEECK 514
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G
Sbjct: 470 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMG 528
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 529 ILSILEEE 536
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G
Sbjct: 470 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMG 528
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 529 ILSILEEE 536
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G
Sbjct: 470 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMG 528
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 529 ILSILEEE 536
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G
Sbjct: 466 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMG 524
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 525 ILSILEEE 532
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G
Sbjct: 465 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMG 523
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 524 ILSILEEE 531
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D C++L+E KP G
Sbjct: 473 NSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIE-KPMG 531
Query: 91 LLCVLDDQ 98
+L +L+++
Sbjct: 532 ILSILEEE 539
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
YGF + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ +
Sbjct: 456 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATID 515
Query: 83 LVEGK-PNGLLCVLDDQA 99
L++G+ P G+L +LD+Q+
Sbjct: 516 LIDGRQPPGILALLDEQS 533
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
YGF + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ +
Sbjct: 455 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATID 514
Query: 83 LVEGK-PNGLLCVLDDQA 99
L++G+ P G+L +LD+Q+
Sbjct: 515 LIDGRQPPGILALLDEQS 532
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
YGF + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ +
Sbjct: 456 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATID 515
Query: 83 LVEGK-PNGLLCVLDDQA 99
L++G+ P G+L +LD+Q+
Sbjct: 516 LIDGRQPPGILALLDEQS 533
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C++L+E KP G
Sbjct: 470 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIE-KPMG 528
Query: 91 LLCVLDDQ 98
+ +L+++
Sbjct: 529 IFSILEEE 536
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 475 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 534
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 535 GILALLDEQS 544
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 463 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 522
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 523 GILALLDEQS 532
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 475 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 534
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 535 GILALLDEQS 544
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 463 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 522
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 523 GILALLDEQS 532
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 463 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 522
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 523 GILALLDEQS 532
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 463 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 522
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 523 GILALLDEQS 532
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 475 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 534
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 535 GILALLDEQS 544
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 463 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 522
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 523 GILALLDEQS 532
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 475 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 534
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 535 GILALLDEQS 544
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G
Sbjct: 471 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMG 529
Query: 91 LLCVLDDQ 98
++ +L+++
Sbjct: 530 IMSILEEE 537
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PN 89
+SFEQLCINY NE LQ +FN H+F+ EQE+Y KE I W I+F D+ + L++G+ P
Sbjct: 464 NSFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDLIDGRQPP 523
Query: 90 GLLCVLDDQA 99
G+L +LD+Q+
Sbjct: 524 GILALLDEQS 533
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 459 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 518
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 519 EARLVGILDILDEENR 534
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 433 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 492
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 493 EARLVGILDILDEENR 508
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCIN+ NE LQ +FN H+F EQEEY EGI W I+F D C++L+E P G
Sbjct: 473 NSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMG 531
Query: 91 LLCVLDDQ 98
+ +L+++
Sbjct: 532 IFSILEEE 539
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNG 90
+SFEQLCIN+ NE LQ +FN H+F EQEEY EGI W I+F D C++L+E P G
Sbjct: 470 NSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIE-XPMG 528
Query: 91 LLCVLDDQ 98
+ +L+++
Sbjct: 529 IFSILEEE 536
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 72.0 bits (175), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 25 YGFYP-QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF Q +SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L
Sbjct: 388 YGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICEL 447
Query: 84 VEGKPNGLLCVLDD 97
+E KP GL+ +LD+
Sbjct: 448 IEKKPIGLISLLDE 461
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 25 YGFYP-QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF Q +SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L
Sbjct: 388 YGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICEL 447
Query: 84 VEGKPNGLLCVLDD 97
+E KP GL+ +LD+
Sbjct: 448 IEKKPIGLISLLDE 461
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 30 QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--G 86
Q +SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E
Sbjct: 441 QLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPA 500
Query: 87 KPNGLLCVLDDQ 98
P GLL +LD++
Sbjct: 501 NPPGLLALLDEE 512
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 71.6 bits (174), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 71.6 bits (174), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 32 SSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE--GKP 88
+SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 474 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533
Query: 89 NGLLCVLDDQ 98
G+L +LD++
Sbjct: 534 PGVLALLDEE 543
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 456 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 515
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 516 EARLVGILDILDEENR 531
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 468 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 527
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 528 EARLVGILDILDEENR 543
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 455 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 514
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 515 EARLVGILDILDEENR 530
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 468 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 527
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 528 EARLVGILDILDEENR 543
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 432 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 491
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 492 EARLVGILDILDEENR 507
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 432 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 491
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 492 EARLVGILDILDEENR 507
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 458 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 517
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 518 EARLVGILDILDEENR 533
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 459 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 518
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 519 EARLVGILDILDEENR 534
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 458 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 517
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 518 EARLVGILDILDEENR 533
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 26 GF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLV 84
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+
Sbjct: 458 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLI 517
Query: 85 EGKPNGLLCVLDDQAK 100
E + G+L +LD++ +
Sbjct: 518 EARLVGILDILDEENR 533
>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
Complexed With Chloride
pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
Thermophilus
Length = 302
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 39 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 90
I A +++ F+++++++ E+Y G+ W+ D T + +V+G P G
Sbjct: 218 IPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVV-VVDGPPTG 268
>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
From Thermus Thermophilus Hb8
Length = 302
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 39 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 90
I A +++ F+++++++ E+Y G+ W+ D T + +V+G P G
Sbjct: 218 IPEAKKYMDLGFHRNLYRFSPEDYRDLGLIWKGASPEDGTEVV-VVDGPPTG 268
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 18/72 (25%)
Query: 33 SFEQLCINYA-NEHLQYYFN-------------QHVFQYE----QEEYNKEGIRWRHIEF 74
SF Q CINYA +E + +F + +FQ E +EE K G+ +R++
Sbjct: 187 SFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRYMLI 246
Query: 75 SDNTLCLQLVEG 86
D + EG
Sbjct: 247 DDAAAQILRSEG 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,820,789
Number of Sequences: 62578
Number of extensions: 149482
Number of successful extensions: 351
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 66
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)