Query psy6719
Match_columns 126
No_of_seqs 112 out of 1022
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:39:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 4.1E-37 1.4E-41 264.9 7.8 99 16-114 379-478 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 5.1E-37 1.7E-41 267.1 7.5 100 15-114 444-544 (784)
3 4db1_A Myosin-7; S1DC, cardiac 100.0 1.8E-36 6E-41 263.5 7.3 98 16-114 454-553 (783)
4 1w7j_A Myosin VA; motor protei 100.0 2.3E-36 7.7E-41 263.3 7.9 98 16-114 430-528 (795)
5 4anj_A Unconventional myosin-V 100.0 3.9E-36 1.3E-40 267.4 7.2 100 15-114 448-548 (1052)
6 1w9i_A Myosin II heavy chain; 100.0 5.4E-36 1.8E-40 260.0 7.9 97 16-112 447-546 (770)
7 1kk8_A Myosin heavy chain, str 100.0 5.4E-36 1.9E-40 262.0 6.6 97 15-112 452-550 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.7E-35 5.9E-40 264.3 7.4 99 15-114 429-528 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 2.3E-35 7.7E-40 261.9 7.7 98 15-112 425-526 (995)
10 1g8x_A Myosin II heavy chain f 100.0 9.4E-35 3.2E-39 258.1 8.1 98 15-112 446-546 (1010)
11 1i84_S Smooth muscle myosin he 100.0 1.7E-34 5.8E-39 259.4 7.1 99 15-114 456-559 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 30.0 13 0.00044 21.6 0.3 26 76-101 25-50 (53)
13 1mof_A Moloney murine leukemia 24.4 17 0.00058 21.2 0.1 26 76-101 27-52 (55)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=4.1e-37 Score=264.92 Aligned_cols=99 Identities=39% Similarity=0.563 Sum_probs=95.2
Q ss_pred CCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCccccc
Q psy6719 16 GEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 94 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~l 94 (126)
...|+||||||||+| .|+|||||||||||+||++|++++|+.+|++|.+|||.|..|+|.||++|+|||++||.|||+|
T Consensus 379 ~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~Gilsl 458 (697)
T 1lkx_A 379 GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISL 458 (697)
T ss_dssp CCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHH
T ss_pred ceeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhh
Confidence 567899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCCCccccccch
Q psy6719 95 LDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 95 LDee~~~p~~td~sF~~~~~ 114 (126)
|||||++|++||++|++|.+
T Consensus 459 LDEec~~p~~tD~~f~~kl~ 478 (697)
T 1lkx_A 459 LDEACLIAKSTDQTFLDSIC 478 (697)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred hHHhhCCCCCChHHHHHHHH
Confidence 99999999999999996643
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=5.1e-37 Score=267.07 Aligned_cols=100 Identities=34% Similarity=0.559 Sum_probs=95.4
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..+|++|.+|||.|..|+|.||++|+|||++||.|||+
T Consensus 444 ~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIls 523 (784)
T 2v26_A 444 SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523 (784)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHH
T ss_pred ccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHH
Confidence 3456889999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCccccccch
Q psy6719 94 VLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~~ 114 (126)
||||||++|++||++|++|.+
T Consensus 524 lLDEe~~~p~~tD~~f~~kl~ 544 (784)
T 2v26_A 524 ILDEENRLPQPSDQHFTSAVH 544 (784)
T ss_dssp HHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHhcCCCCChHHHHHHHH
Confidence 999999999999999996643
No 3
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.8e-36 Score=263.49 Aligned_cols=98 Identities=41% Similarity=0.694 Sum_probs=91.7
Q ss_pred CCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhcCCCcccc
Q psy6719 16 GEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~kp~Gll~ 93 (126)
...|+||||||||+| .|+|||||||||||+||++|++++|+.+|++|.+|||.|..|+| .||++|+|||+ +|.|||+
T Consensus 454 ~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLie-kp~Gil~ 532 (783)
T 4db1_A 454 QYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMS 532 (783)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHH-STTSHHH
T ss_pred CceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHh-CCCchHh
Confidence 456889999999999 99999999999999999999999999999999999999999999 59999999999 5899999
Q ss_pred cchhhhcCCCCCCccccccch
Q psy6719 94 VLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~~ 114 (126)
||||||++|++||.+|++|..
T Consensus 533 lLDEec~~p~~tD~tf~~kl~ 553 (783)
T 4db1_A 533 ILEEECMFPKATDMTFKAKLF 553 (783)
T ss_dssp HHCC-TTCTTCCHHHHHHHHH
T ss_pred hhhHHhcCCCCCHHHHHHHHH
Confidence 999999999999999995543
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.3e-36 Score=263.27 Aligned_cols=98 Identities=44% Similarity=0.658 Sum_probs=93.3
Q ss_pred CCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCccccc
Q psy6719 16 GEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 94 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~l 94 (126)
...|+||||||||+| .|+|||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++| .|||+|
T Consensus 430 ~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlsl 508 (795)
T 1w7j_A 430 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDL 508 (795)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHH
T ss_pred cceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHh
Confidence 456889999999999 999999999999999999999999999999999999999999999999999999976 999999
Q ss_pred chhhhcCCCCCCccccccch
Q psy6719 95 LDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 95 LDee~~~p~~td~sF~~~~~ 114 (126)
|||||++|++||++|++|..
T Consensus 509 LDEec~~p~~tD~~f~~kl~ 528 (795)
T 1w7j_A 509 LDEECKMPKGSDDTWAQKLY 528 (795)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred hhhhccCCCCChHHHHHHHH
Confidence 99999999999999995533
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=3.9e-36 Score=267.45 Aligned_cols=100 Identities=34% Similarity=0.559 Sum_probs=95.3
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..|+|.||++|+|||+++|.|||+
T Consensus 448 ~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~ 527 (1052)
T 4anj_A 448 SSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 527 (1052)
T ss_dssp CSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHH
T ss_pred ccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHH
Confidence 3456889999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCccccccch
Q psy6719 94 VLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~~ 114 (126)
+|||||++|++||++|+++.+
T Consensus 528 lLDEe~~~p~~tD~~f~~kl~ 548 (1052)
T 4anj_A 528 ILDEENRLPQPSDQHFTSAVH 548 (1052)
T ss_dssp HHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999996543
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=5.4e-36 Score=260.00 Aligned_cols=97 Identities=42% Similarity=0.718 Sum_probs=92.7
Q ss_pred CCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhc-CCCccc
Q psy6719 16 GEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLL 92 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~-kp~Gll 92 (126)
...|+||||||||+| .|+|||||||||||+||++|++++|..+|++|.+|||.|..++| .||++|+|||++ +|.|||
T Consensus 447 ~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gil 526 (770)
T 1w9i_A 447 AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGIL 526 (770)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHH
T ss_pred CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchh
Confidence 456889999999999 99999999999999999999999999999999999999999999 599999999997 499999
Q ss_pred ccchhhhcCCCCCCcccccc
Q psy6719 93 CVLDDQAKFSSSPFPVFRVS 112 (126)
Q Consensus 93 ~lLDee~~~p~~td~sF~~~ 112 (126)
+||||||++|++||++|++|
T Consensus 527 slLDEec~~p~~tD~~f~~k 546 (770)
T 1w9i_A 527 ALLDEQSVFPNATDNTLITK 546 (770)
T ss_dssp HHHHHHHSSSSCCHHHHHHH
T ss_pred hhhhhhhCCCCCChHHHHHH
Confidence 99999999999999999954
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=5.4e-36 Score=261.99 Aligned_cols=97 Identities=42% Similarity=0.725 Sum_probs=92.4
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhcCCCccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 92 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~kp~Gll 92 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..||++|.+|||.|..|+| .||++|+|||++ |.|||
T Consensus 452 ~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIl 530 (837)
T 1kk8_A 452 RNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGIL 530 (837)
T ss_dssp CCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHH
T ss_pred CcceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHH
Confidence 3456889999999999 99999999999999999999999999999999999999999999 599999999995 89999
Q ss_pred ccchhhhcCCCCCCcccccc
Q psy6719 93 CVLDDQAKFSSSPFPVFRVS 112 (126)
Q Consensus 93 ~lLDee~~~p~~td~sF~~~ 112 (126)
+||||||++|++||++|++|
T Consensus 531 slLDEec~~p~~tD~tf~~k 550 (837)
T 1kk8_A 531 SILEEECMFPKADDKSFQDK 550 (837)
T ss_dssp HHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHhcCCCCChHHHHHH
Confidence 99999999999999999944
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.7e-35 Score=264.26 Aligned_cols=99 Identities=43% Similarity=0.652 Sum_probs=93.7
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..|+|.||++|+|||+++ .|||+
T Consensus 429 ~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~ 507 (1080)
T 2dfs_A 429 QHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 507 (1080)
T ss_dssp CCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHH
T ss_pred cCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceee
Confidence 3456899999999999 999999999999999999999999999999999999999999999999999999976 89999
Q ss_pred cchhhhcCCCCCCccccccch
Q psy6719 94 VLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~~ 114 (126)
||||||++|++||++|+.|..
T Consensus 508 lLdee~~~p~~tD~~f~~kl~ 528 (1080)
T 2dfs_A 508 LLDEECKMPKGSDDTWAQKLY 528 (1080)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH
T ss_pred eccccccCCCCChHHHHHHHH
Confidence 999999999999999995533
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.3e-35 Score=261.86 Aligned_cols=98 Identities=41% Similarity=0.662 Sum_probs=93.2
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhc--CCCc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNG 90 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~--kp~G 90 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..|+| .||++|+|||++ +|.|
T Consensus 425 ~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~G 504 (995)
T 2ycu_A 425 GASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504 (995)
T ss_dssp CSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCC
T ss_pred ccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCc
Confidence 3456889999999999 99999999999999999999999999999999999999999999 699999999997 4899
Q ss_pred ccccchhhhcCCCCCCcccccc
Q psy6719 91 LLCVLDDQAKFSSSPFPVFRVS 112 (126)
Q Consensus 91 ll~lLDee~~~p~~td~sF~~~ 112 (126)
||+||||||++|++||.+|++|
T Consensus 505 il~lLdee~~~p~~tD~~f~~k 526 (995)
T 2ycu_A 505 LLALLDEECWFPKATDKSFVEK 526 (995)
T ss_dssp HHHHHHHSSSSTTCCHHHHHHH
T ss_pred hhhhhHHHhcCCCCchHHHHHH
Confidence 9999999999999999999955
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=9.4e-35 Score=258.14 Aligned_cols=98 Identities=41% Similarity=0.674 Sum_probs=93.5
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhc-CCCcc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 91 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~-kp~Gl 91 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..|+| .||++|+|||++ +|.||
T Consensus 446 ~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gi 525 (1010)
T 1g8x_A 446 KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525 (1010)
T ss_dssp CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCH
T ss_pred cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCee
Confidence 3456899999999999 99999999999999999999999999999999999999999999 599999999997 49999
Q ss_pred cccchhhhcCCCCCCcccccc
Q psy6719 92 LCVLDDQAKFSSSPFPVFRVS 112 (126)
Q Consensus 92 l~lLDee~~~p~~td~sF~~~ 112 (126)
|+||||||++|++||++|++|
T Consensus 526 l~lLdee~~~p~~td~~f~~k 546 (1010)
T 1g8x_A 526 LALLDEQSVFPNATDNTLITK 546 (1010)
T ss_dssp HHHHHHHTTSSSCCHHHHHHH
T ss_pred ehhhhHHhCCCCCChHHHHHH
Confidence 999999999999999999966
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.7e-34 Score=259.40 Aligned_cols=99 Identities=40% Similarity=0.646 Sum_probs=92.2
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhcCCC---
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN--- 89 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~kp~--- 89 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..|+| .||++|+|||++ |.
T Consensus 456 ~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~-~~~~~ 534 (1184)
T 1i84_S 456 GASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER-PTNPP 534 (1184)
T ss_dssp -CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSC-CSSSC
T ss_pred CcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhC-CCCCC
Confidence 3456889999999999 99999999999999999999999999999999999999999999 599999999995 55
Q ss_pred cccccchhhhcCCCCCCccccccch
Q psy6719 90 GLLCVLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 90 Gll~lLDee~~~p~~td~sF~~~~~ 114 (126)
|||+||||||++|++||.+|+.|..
T Consensus 535 Gil~lLdee~~~p~~td~~~~~kl~ 559 (1184)
T 1i84_S 535 GVLALLDEECWFPKATDTSFVEKLI 559 (1184)
T ss_dssp CHHHHHHHTTSCTTCCHHHHHHHHH
T ss_pred CchhhhhhhhCCCCCChHHHHHHHH
Confidence 9999999999999999999995543
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=29.95 E-value=13 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.6
Q ss_pred CchhhhHhhhcCCCcccccchhhhcC
Q psy6719 76 DNTLCLQLVEGKPNGLLCVLDDQAKF 101 (126)
Q Consensus 76 dn~~~ldLi~~kp~Gll~lLDee~~~ 101 (126)
.|...+|++.-+.+|+=..|.|+|-|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57888999888889999999999976
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=24.40 E-value=17 Score=21.25 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.5
Q ss_pred CchhhhHhhhcCCCcccccchhhhcC
Q psy6719 76 DNTLCLQLVEGKPNGLLCVLDDQAKF 101 (126)
Q Consensus 76 dn~~~ldLi~~kp~Gll~lLDee~~~ 101 (126)
.|...+|++.-+.+|+=..|.|+|-|
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 57788999888889999999999976
Done!