Query psy6719
Match_columns 126
No_of_seqs 112 out of 1022
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 16:40:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lkxa_ c.37.1.9 (A:) Myosin S 100.0 6.1E-33 4.4E-37 236.6 7.8 99 15-113 370-469 (684)
2 d1d0xa2 c.37.1.9 (A:2-33,A:80- 100.0 1.2E-32 8.6E-37 235.7 7.4 99 15-113 399-500 (712)
3 d1br2a2 c.37.1.9 (A:80-789) My 100.0 2E-32 1.5E-36 234.1 7.2 98 17-114 380-481 (710)
4 d1w7ja2 c.37.1.9 (A:63-792) My 100.0 3.2E-32 2.3E-36 233.3 8.4 97 16-113 368-465 (730)
5 d2mysa2 c.37.1.9 (A:4-33,A:80- 100.0 3.8E-32 2.8E-36 234.7 6.8 99 15-113 406-505 (794)
6 d1kk8a2 c.37.1.9 (A:1-28,A:77- 100.0 1.2E-31 9E-36 231.4 7.1 101 15-115 404-505 (789)
7 d2c78a3 c.37.1.8 (A:9-212) Elo 18.1 22 0.0016 23.4 1.4 15 16-30 66-80 (204)
8 d2bv3a2 c.37.1.8 (A:7-282) Elo 16.4 19 0.0014 25.4 0.8 14 17-30 71-84 (276)
9 d2gnoa1 a.80.1.1 (A:209-306) g 16.0 8.8 0.00064 22.8 -1.0 35 87-121 20-54 (98)
10 d1pd3a_ a.30.3.1 (A:) Nonstruc 12.7 46 0.0034 17.5 1.5 28 91-122 14-41 (54)
No 1
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=99.97 E-value=6.1e-33 Score=236.58 Aligned_cols=99 Identities=39% Similarity=0.573 Sum_probs=94.9
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
.+.+|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|++||+++|.|||+
T Consensus 370 ~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~if~~e~~~Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~ 449 (684)
T d1lkxa_ 370 KGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449 (684)
T ss_dssp CCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHH
T ss_pred ccceEEEeeccCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCcCCchHHHHHHHhccchHHH
Confidence 3456899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCccccccc
Q psy6719 94 VLDDQAKFSSSPFPVFRVSR 113 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~ 113 (126)
+|||||++|++||++|+++.
T Consensus 450 lLdee~~~~~~tD~~~l~kl 469 (684)
T d1lkxa_ 450 LLDEACLIAKSTDQTFLDSI 469 (684)
T ss_dssp HHHHHHHSTTCCHHHHHHHH
T ss_pred HhHHHhcCCCCchHHHHHHH
Confidence 99999999999999999553
No 2
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=99.97 E-value=1.2e-32 Score=235.71 Aligned_cols=99 Identities=40% Similarity=0.664 Sum_probs=86.8
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhc-CCCcc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 91 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~-kp~Gl 91 (126)
....|+||||||||+| .|+||||||||||||||++|++++|..++++|.+|||.|..++| .||++|++||++ +|.||
T Consensus 399 ~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gl 478 (712)
T d1d0xa2 399 KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478 (712)
T ss_dssp CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHCTTTTCH
T ss_pred ccceeeeeecccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCCCcHHHHHHHhccCCCcH
Confidence 4456899999999999 99999999999999999999999999999999999999999999 599999999985 58999
Q ss_pred cccchhhhcCCCCCCccccccc
Q psy6719 92 LCVLDDQAKFSSSPFPVFRVSR 113 (126)
Q Consensus 92 l~lLDee~~~p~~td~sF~~~~ 113 (126)
|++|||||++|++||.+|+++.
T Consensus 479 l~lLdee~~~~~~td~~~l~kl 500 (712)
T d1d0xa2 479 LALLDEQSVFPNATDNTLITKL 500 (712)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHhHHHhcCCCCChHHHHHHH
Confidence 9999999999999999999554
No 3
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=99.97 E-value=2e-32 Score=234.07 Aligned_cols=98 Identities=41% Similarity=0.648 Sum_probs=88.7
Q ss_pred CCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceeccc-CCchhhhHhhhc--CCCccc
Q psy6719 17 EGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLL 92 (126)
Q Consensus 17 ~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~-~dn~~~ldLi~~--kp~Gll 92 (126)
..|+||||||||+| .|+||||||||||||||++|++++|..++++|.+|||.|..++| .||++|++||++ +|.|||
T Consensus 380 ~~IgiLDifGFE~f~~NsfEQLcINy~NE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil 459 (710)
T d1br2a2 380 SFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVL 459 (710)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHH
T ss_pred ceeeEEeecCccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCcchhhHHHhccCCCcchh
Confidence 45789999999999 99999999999999999999999999999999999999999999 599999999997 688999
Q ss_pred ccchhhhcCCCCCCccccccch
Q psy6719 93 CVLDDQAKFSSSPFPVFRVSRE 114 (126)
Q Consensus 93 ~lLDee~~~p~~td~sF~~~~~ 114 (126)
++|||||++|++||++|+++.+
T Consensus 460 ~lLdee~~~p~~td~~~l~kl~ 481 (710)
T d1br2a2 460 ALLDEECWFPKATDTSFVEKLI 481 (710)
T ss_dssp HHHHHHC----CCHHHHHHHHH
T ss_pred hhhhhhhcCCCCchHHHHHHHH
Confidence 9999999999999999996543
No 4
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=99.97 E-value=3.2e-32 Score=233.27 Aligned_cols=97 Identities=43% Similarity=0.661 Sum_probs=92.6
Q ss_pred CCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCccccc
Q psy6719 16 GEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 94 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~l 94 (126)
...|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ |.|||++
T Consensus 368 ~~~IgiLDifGFE~f~~NsfEQLcINy~NEkLq~~f~~~~F~~e~~~y~~EgI~~~~i~~~dN~~~l~Li~~-~~gil~l 446 (730)
T d1w7ja2 368 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA-KMGVLDL 446 (730)
T ss_dssp SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHS-TTSHHHH
T ss_pred ccccceeeccCCcccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCCChhHHhhhhc-cccHHHH
Confidence 346889999999999 99999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred chhhhcCCCCCCccccccc
Q psy6719 95 LDDQAKFSSSPFPVFRVSR 113 (126)
Q Consensus 95 LDee~~~p~~td~sF~~~~ 113 (126)
|||||++|++||++|++++
T Consensus 447 Ldee~~~~~~td~~~l~kl 465 (730)
T d1w7ja2 447 LDEECKMPKGSDDTWAQKL 465 (730)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred hHHhccCCCCchHHHHHHH
Confidence 9999999999999999664
No 5
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=99.97 E-value=3.8e-32 Score=234.74 Aligned_cols=99 Identities=36% Similarity=0.577 Sum_probs=92.2
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||..+++++..+|.|||+
T Consensus 406 ~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~ 485 (794)
T d2mysa2 406 RQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485 (794)
T ss_dssp CCEEEEEEEEECCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHH
T ss_pred cceEEEEeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHH
Confidence 3456889999999999 999999999999999999999999999999999999999999998777777777779999999
Q ss_pred cchhhhcCCCCCCccccccc
Q psy6719 94 VLDDQAKFSSSPFPVFRVSR 113 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~ 113 (126)
+|||||++|++||++|+++.
T Consensus 486 lLdee~~~~~~td~~f~~kl 505 (794)
T d2mysa2 486 ILEEECMFPKATDTSFKNKL 505 (794)
T ss_dssp HHHHHTTCTTCCHHHHHHHH
T ss_pred HHHHhccCccccHHHHHHHH
Confidence 99999999999999999654
No 6
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=99.97 E-value=1.2e-31 Score=231.41 Aligned_cols=101 Identities=38% Similarity=0.550 Sum_probs=93.5
Q ss_pred CCCCeeeeeccCcccc-ccchhHHHhhhhhhHHHHHHHHHhhHhHHHHhhhhCCcceecccCCchhhhHhhhcCCCcccc
Q psy6719 15 SGEGSIPAERYGFYPQ-QSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 93 (126)
Q Consensus 15 ~~~~i~ILDi~GFE~~-~n~feqlciN~~nE~L~~~~~~~~f~~~~~~y~~EgI~~~~i~~~dn~~~ldLi~~kp~Gll~ 93 (126)
....|+||||||||+| .|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||..+++++.++|.|||+
T Consensus 404 ~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~Gll~ 483 (789)
T d1kk8a2 404 RNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483 (789)
T ss_dssp CCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHH
T ss_pred cceEEEEeecccceecCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCcCCCHHHHHHHHcCCccHHH
Confidence 3456899999999999 999999999999999999999999999999999999999999998887787777779999999
Q ss_pred cchhhhcCCCCCCccccccchh
Q psy6719 94 VLDDQAKFSSSPFPVFRVSREV 115 (126)
Q Consensus 94 lLDee~~~p~~td~sF~~~~~~ 115 (126)
+|||||++|++||++|+++.+.
T Consensus 484 lLdee~~~~~~td~~~l~kl~~ 505 (789)
T d1kk8a2 484 ILEEECMFPKADDKSFQDKLYQ 505 (789)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCCHHHHHHHHHH
Confidence 9999999999999999966543
No 7
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=18.14 E-value=22 Score=23.41 Aligned_cols=15 Identities=7% Similarity=-0.164 Sum_probs=12.6
Q ss_pred CCCeeeeeccCcccc
Q psy6719 16 GEGSIPAERYGFYPQ 30 (126)
Q Consensus 16 ~~~i~ILDi~GFE~~ 30 (126)
+..+.++|.||.+.|
T Consensus 66 ~~~i~iiDtPGh~df 80 (204)
T d2c78a3 66 KRHYSHVDCPGHADY 80 (204)
T ss_dssp SCEEEEEECCCSGGG
T ss_pred CeEEEEEeCCCchhh
Confidence 455789999999988
No 8
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}
Probab=16.36 E-value=19 Score=25.40 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=11.9
Q ss_pred CCeeeeeccCcccc
Q psy6719 17 EGSIPAERYGFYPQ 30 (126)
Q Consensus 17 ~~i~ILDi~GFE~~ 30 (126)
..+.|+|+||+..|
T Consensus 71 ~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 71 HRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECCCSSSSC
T ss_pred eEEEEecCCchhhh
Confidence 44679999999998
No 9
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=16.05 E-value=8.8 Score=22.76 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCCcccccchhhhcCCCCCCccccccchhhHHHHH
Q psy6719 87 KPNGLLCVLDDQAKFSSSPFPVFRVSREVGIFQQA 121 (126)
Q Consensus 87 kp~Gll~lLDee~~~p~~td~sF~~~~~~~~~~~~ 121 (126)
.|.|.+.+.|.....-.+.|+-.+.+.-.|+.+|.
T Consensus 20 e~k~ff~lfdqv~ntitg~daflliq~~~riilhe 54 (98)
T d2gnoa1 20 ESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHE 54 (98)
T ss_dssp CGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHhhcccchHHHHHHHHHHHhccc
Confidence 46788888877766656666655555555665553
No 10
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=12.71 E-value=46 Score=17.50 Aligned_cols=28 Identities=18% Similarity=0.136 Sum_probs=19.7
Q ss_pred ccccchhhhcCCCCCCccccccchhhHHHHHh
Q psy6719 91 LLCVLDDQAKFSSSPFPVFRVSREVGIFQQAL 122 (126)
Q Consensus 91 ll~lLDee~~~p~~td~sF~~~~~~~~~~~~~ 122 (126)
|=|+++|--..-+.|..||. +--|+|++
T Consensus 14 irwlieevrh~lk~tensfe----qitfmqal 41 (54)
T d1pd3a_ 14 IRWLIEEVRHRLKITENSFE----QITFMQAL 41 (54)
T ss_dssp HHHHHHHHHHTCCCCTTSHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHH----HHHHHHHH
Confidence 44666665556788999997 55588876
Done!