RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6719
(126 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 134 bits (340), Expect = 4e-38
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
GF Y + +SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L
Sbjct: 454 AGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDL 513
Query: 84 VEGKPNGLLCVLDDQAKF 101
+E + G+L +LD++ +
Sbjct: 514 IEARLVGILDILDEENRL 531
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 130 bits (329), Expect = 2e-36
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF Q +SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L
Sbjct: 388 YGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICEL 447
Query: 84 VEGKPNGLLCVLDDQAKF 101
+E KP GL+ +LD+
Sbjct: 448 IEKKPIGLISLLDEACLI 465
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 129 bits (327), Expect = 2e-36
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF + +SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L
Sbjct: 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINL 498
Query: 84 VEGKPNGLLCVLDDQAKF 101
+E G+L +LD++ K
Sbjct: 499 IE-AKMGVLDLLDEECKM 515
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 126 bits (320), Expect = 2e-35
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
YGF + +SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L
Sbjct: 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINL 498
Query: 84 VEGKPNGLLCVLDDQAKF 101
+E G+L +LD++ K
Sbjct: 499 IE-AKMGVLDLLDEECKM 515
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 123 bits (311), Expect = 4e-34
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
GF Q +SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+
Sbjct: 435 AGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCID 494
Query: 83 LVEG--KPNGLLCVLDDQAKF 101
L+E P GLL +LD++ F
Sbjct: 495 LIERPANPPGLLALLDEECWF 515
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 123 bits (310), Expect = 5e-34
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
GF + +SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++
Sbjct: 466 AGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIE 525
Query: 83 LVEGK--PNGLLCVLDDQAKF 101
L+E P G+L +LD++ F
Sbjct: 526 LIERPTNPPGVLALLDEECWF 546
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 122 bits (309), Expect = 7e-34
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
GF + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ +
Sbjct: 456 SGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATID 515
Query: 83 LVEGK-PNGLLCVLDDQAKF 101
L++G+ P G+L +LD+Q+ F
Sbjct: 516 LIDGRQPPGILALLDEQSVF 535
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 121 bits (307), Expect = 1e-33
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
YGF + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ +
Sbjct: 456 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATID 515
Query: 83 LVEGK-PNGLLCVLDDQAKF 101
L++G+ P G+L +LD+Q+ F
Sbjct: 516 LIDGRQPPGILALLDEQSVF 535
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 121 bits (306), Expect = 2e-33
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 25 YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
GF +SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+
Sbjct: 462 AGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCID 521
Query: 83 LVEGKPNGLLCVLDDQAKF 101
L+E KP G+L +L+++ F
Sbjct: 522 LIE-KPMGILSILEEECMF 539
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 120 bits (302), Expect = 6e-33
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 33 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 91
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 92 LCVLDDQAKF 101
+ +L+++ F
Sbjct: 531 MSILEEECMF 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.001
Identities = 20/134 (14%), Positives = 32/134 (23%), Gaps = 38/134 (28%)
Query: 23 ERYGF---YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEY---------------NK 64
+ Y + Y H+ + H+ E E K
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 65 ---EGIRWRHIEFSDNTLCLQLV---------EGKPNGLLCVLDDQAKFSSSPFPVFRVS 112
+ W NTL QL + K L+ + D F S
Sbjct: 507 IRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILD---FLPKIEENLICS 562
Query: 113 REVGIFQQALNQPH 126
+ + + AL
Sbjct: 563 KYTDLLRIALMAED 576
Score = 32.1 bits (72), Expect = 0.036
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 44 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 97
E LQ Q + + I+ R L + N LL VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
>2iia_A Sensory rhodopsin transducer protein; signaling protein; 1.80A
{Anabaena SP} PDB: 2ii9_A 2ii7_A 2ii8_A
Length = 131
Score = 29.9 bits (67), Expect = 0.12
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 17 EGSIPAERYGFYPQQSSFEQLCI-NYANEHLQ-----YYFNQHVFQYEQEEYNKEGIRWR 70
EG IP G PQ S E +CI N +E YY ++ R +
Sbjct: 20 EGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPV--GPYRLTVPARRTK 77
Query: 71 HIEFSD 76
H+ F+D
Sbjct: 78 HVRFND 83
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.4 bits (58), Expect = 2.6
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 43 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 76
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 24.6 bits (53), Expect = 9.8
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 57 YEQEEYNKEGIRWRHIEFSDNT 78
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,860,537
Number of extensions: 95446
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 21
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)