RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6719
         (126 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 77.8 bits (191), Expect = 1e-18
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 25  YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
           YGF   Q +SFEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L
Sbjct: 380 YGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICEL 439

Query: 84  VEGKPNGLLCVLDDQAKFSSS 104
           +E KP GL+ +LD+    + S
Sbjct: 440 IEKKPIGLISLLDEACLIAKS 460


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 75.1 bits (184), Expect = 1e-17
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 25  YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
            GF     +SFEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      
Sbjct: 416 AGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIE 475

Query: 84  VEGKPNGLLCVLDDQAKFSSSPFPVF 109
           +  KP G+  +L+++  F  +    F
Sbjct: 476 LIEKPMGIFSILEEECMFPKATDTSF 501


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 73.2 bits (179), Expect = 6e-17
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 25  YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 83
            GF     +SFEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      
Sbjct: 414 AGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCID 473

Query: 84  VEGKPNGLLCVLDDQAKFSSS 104
           +  KP G+L +L+++  F  +
Sbjct: 474 LIEKPMGILSILEEECMFPKA 494


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 72.5 bits (177), Expect = 1e-16
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 25  YGF-YPQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQ 82
            GF   + +SFEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++
Sbjct: 388 AGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIE 447

Query: 83  LVEG--KPNGLLCVLDDQAKFSSSPFPVF 109
           L+E    P G+L +LD++  F  +    F
Sbjct: 448 LIERPTNPPGVLALLDEECWFPKATDTSF 476


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 29  PQQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 88
            + +SFEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K 
Sbjct: 382 FEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK- 440

Query: 89  NGLLCVLDDQAKFSSS 104
            G+L +LD++ K    
Sbjct: 441 MGVLDLLDEECKMPKG 456


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 66.6 bits (162), Expect = 1e-14
 Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 30  QQSSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 87
           + +SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474

Query: 88  PNGLLCVLDDQAKFSSSPFPVF 109
           P G+L +LD+Q+ F ++     
Sbjct: 475 PPGILALLDEQSVFPNATDNTL 496


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.5 bits (53), Expect = 5.4
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 39  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 77
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus
          subtilis [TaxId: 1423]}
          Length = 74

 Score = 22.4 bits (48), Expect = 9.4
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 28 YPQQSS-FEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 65
          +P+ S+ + ++  +Y   +  Y      F    ++Y  E
Sbjct: 33 FPKTSTDYHEIS-SYLELNADYLHTMATFDEAWDQYESE 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,953
Number of extensions: 19877
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 11
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)