BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy672
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 150/288 (52%), Gaps = 21/288 (7%)
Query: 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPT 100
P T++LA + FY +G+FQ GD+ G+SQ +M R V V++AL + ++ FP A
Sbjct: 69 PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEASV 128
Query: 101 ---KVAFQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIW 157
K F G+ PGV+G VDC HV I+ P+ E+ ++ NRKG SLN ++ +
Sbjct: 129 QALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAED-LSYVNRKGLHSLNCLMVCDIRGALM 187
Query: 158 DVVSGWPGSVHDSRIFTNSRVCHRFERG-EVRGILLGDSGYAQNTFLYTPLLNPTTPQEQ 216
V + WPGS+ D + S + +FE G LLGDS + T+L TPL P TP E
Sbjct: 188 TVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPLHIPETPAEY 247
Query: 217 RYNKAHIKTRNSVERLFGIWKRRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQTRQ 273
RYN AH T + +E+ F RF CL + L SP +HI+ AC VLHNI+++
Sbjct: 248 RYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGM 307
Query: 274 EL-------PAEDEVEEEVEEDVVVNDGVGRNGAGAVIRRAFINEHFA 314
++ P E EEE E ++ R IR+ + HF+
Sbjct: 308 DVWSSPVTGPVEQPPEEEYEHMESLDLEADR------IRQELMLTHFS 349
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 152/288 (52%), Gaps = 21/288 (7%)
Query: 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPT 100
P T++LA + FY +G+FQ GD+ G+SQ +M R V V++AL + +++FP A
Sbjct: 69 PETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEASI 128
Query: 101 ---KVAFQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIW 157
K F G+ PGV+G VDC HV I+ P+ E+ ++ NRKG SLN ++ +
Sbjct: 129 QALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAED-LSYVNRKGLHSLNCLMVCDIRGTLM 187
Query: 158 DVVSGWPGSVHDSRIFTNSRVCHRFERGEVR-GILLGDSGYAQNTFLYTPLLNPTTPQEQ 216
V + WPGS+ D + S + +FE G + LLGDS + T+L TPL P TP E
Sbjct: 188 TVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPLHIPETPAEY 247
Query: 217 RYNKAHIKTRNSVERLFGIWKRRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQTRQ 273
RYN AH T + +E+ F RF CL + L SP +HI+ AC VLHNI+++
Sbjct: 248 RYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGM 307
Query: 274 EL-------PAEDEVEEEVEEDVVVNDGVGRNGAGAVIRRAFINEHFA 314
++ P E EEE E ++ R IR+ + HF+
Sbjct: 308 DVWSSPMTGPMEQPPEEEYEHMESLDLEADR------IRQELMLTHFS 349
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 152/288 (52%), Gaps = 21/288 (7%)
Query: 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPT 100
P T++LA + FY +G+FQ GD+ G+SQ +M R V V++AL + ++ FP A
Sbjct: 69 PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAAI 128
Query: 101 ---KVAFQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIW 157
K F G+ PGV+G VDC HV I+ P+ E+ ++ NRKG SLN V+ +
Sbjct: 129 QSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAED-LSYVNRKGLHSLNCLVVCDIRGALM 187
Query: 158 DVVSGWPGSVHDSRIFTNSRVCHRFERGEVR-GILLGDSGYAQNTFLYTPLLNPTTPQEQ 216
V + WPGS+ D + S + +FE G + LLGDS + +T+L TPL P TP E
Sbjct: 188 TVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPLHIPETPAEY 247
Query: 217 RYNKAHIKTRNSVERLFGIWKRRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQTRQ 273
RYN+AH T + +E+ RF CL + L SP +HI+ AC VLHNI+++
Sbjct: 248 RYNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGM 307
Query: 274 EL-------PAEDEVEEEVEEDVVVNDGVGRNGAGAVIRRAFINEHFA 314
++ P E E E E+ ++ R IR+ I HF+
Sbjct: 308 DVWSSPVTGPIEQPPEGEDEQMESLDLEADR------IRQELILTHFS 349
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 131/237 (55%), Gaps = 8/237 (3%)
Query: 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPT 100
P T++LA + FY +G+FQ GD+ G+SQ +M R V V++AL + ++ FP A
Sbjct: 69 PETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVDEAAV 128
Query: 101 ---KVAFQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIW 157
K F G+ PGV+G DC HV I+ P+ E+ ++ NRKG SLN V+ +
Sbjct: 129 QSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAED-LSYVNRKGLHSLNCLVVCDIRGALM 187
Query: 158 DVVSGWPGSVHDSRIFTNSRVCHRFERGEVR-GILLGDSGYAQNTFLYTPLLNPTTPQEQ 216
V + WPGS+ D + S + +FE G + LLGDS + ++L TPL P T E
Sbjct: 188 TVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPETAAEY 247
Query: 217 RYNKAHIKTRNSVERLFGIWKRRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQ 270
RYN+AH T + +ER RF CL + L SP C+HI+ AC VLHNI++
Sbjct: 248 RYNRAHSATHSVIERTLQTLCCRFRCLDGSKGALQYSPEKCSHIILACCVLHNISLD 304
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 157/320 (49%), Gaps = 19/320 (5%)
Query: 13 SKDVVLNII-FP---------LARNVLETNTMQGVKQPPMTRLLAVIQFYATGNFQIFTG 62
S D +LN FP L ++ L T + P ++LA + FY +G+FQ G
Sbjct: 31 SDDFLLNTFGFPREFIYYLVELLKDSLLRRTQRSRAISPDVQILAALGFYTSGSFQSKMG 90
Query: 63 DSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPT---KVAFQGIGNFPGVVGCVDC 119
D+ G+SQ +M R V V+KAL + ++ F A K F I P V G VDC
Sbjct: 91 DAIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDC 150
Query: 120 THVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIWDVVSGWPGSVHDSRIFTNSRVC 179
H+ I+ P+ ++ ++ N+KG S+N Q++ + + WPGS+ D +F S V
Sbjct: 151 AHIAIKAPNADDS-SYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVA 209
Query: 180 HRFERGE--VRGILLGDSGYAQNTFLYTPLLNPTTPQEQRYNKAHIKTRNSVERLFGIWK 237
FE E G LLGD+ Y +L TP+ +P +P + RYN AH T V+R F +
Sbjct: 210 KLFEEQENDDEGWLLGDNRYPLKKWLMTPVQSPESPADYRYNLAHTTTHEIVDRTFRAIQ 269
Query: 238 RRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQTRQELPAEDEVEEEVEEDVVVNDG 294
RF CL + L SP C+HI+ AC VLHNI++Q+ + + E + ++
Sbjct: 270 TRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNISLQSGLDAWTFERTEATDQSGEDIDPS 329
Query: 295 VGRNGAGAVIRRAFINEHFA 314
+ +R+ I HF+
Sbjct: 330 DTDDPEALRVRQELIQNHFS 349
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 11/282 (3%)
Query: 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQ---L 97
P T+++A + FY +G+FQ GD+ G+SQ +M R V V++AL + ++ FP +
Sbjct: 69 PETQIMAALGFYTSGSFQTRMGDTIGISQASMSRCVTNVTEALVERASQFISFPRDERSV 128
Query: 98 APTKVAFQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIW 157
K F + PGV+G VDCT V I+ P+ E+ ++ N +G SLN ++ +
Sbjct: 129 QGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSED-LSYVNSRGLHSLNCLLVCDARGSLL 187
Query: 158 DVVSGWPGSVHDSRIFTNSRVCHRFE-RGEVRGILLGDSGYAQNTFLYTPLLNPTTPQEQ 216
+ GS+ D+ + S + FE + +G LL D+ + +L TP+ P +P +
Sbjct: 188 WAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFILRPWLMTPVQIPESPSDY 247
Query: 217 RYNKAHIKTRNSVERLFGIWKRRFACL---RRKLANSPVTCTHIVTACAVLHNIAVQTRQ 273
RYN AH T + +ER + RF CL R L SP IV AC +LHNIA+Q
Sbjct: 248 RYNMAHTATHSVMERTQRSLRLRFRCLDGSRATLQYSPEKSAQIVLACCILHNIALQHDL 307
Query: 274 ELPAEDEVEE-EVEEDVVVNDGVGRNGAGAVIRRAFINEHFA 314
++ +E E EE+ V + + +R+ I HF+
Sbjct: 308 DIVSESGATSLEPEEECVHMEPL--ESEAYRMRQELILTHFS 347
>sp|Q00462|T702_FREDI Probable transposase for insertion sequence element IS702
OS=Fremyella diplosiphon PE=3 SV=1
Length = 276
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Query: 44 RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYVKFPEQLAPTKVA 103
++L VIQ++ G G+S+ +CR V ++ L + KF P K
Sbjct: 53 QVLMVIQYWREYRTYYHIGLDWGLSESAVCRTVYKIENILISSR----KFS---LPGKKE 105
Query: 104 FQGIGNFPGVVGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGPNLEIWDVVSGW 163
+ + +V +D T PI+ P + F + G +L Q++ +
Sbjct: 106 LLKMPSQENLV-VMDVTESPIERPKKSQKKFFSGKAGEHTLKTQLVIHQKTSQIICLGHG 164
Query: 164 PGSVHDSRIFTNSRV 178
G +HD R+F S V
Sbjct: 165 KGRIHDFRLFKTSGV 179
>sp|Q60553|ERBB2_MESAU Receptor tyrosine-protein kinase erbB-2 OS=Mesocricetus auratus
GN=ERBB2 PE=2 SV=1
Length = 1254
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 160 VSGWPGSVHDSRIFTNSRVCHRFERGEVRGILLGDSGYA 198
+S WP S+HD +F N RV +RG +L D Y+
Sbjct: 412 ISAWPDSLHDLSVFQNLRV--------IRGRVLHDGAYS 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,931,330
Number of Sequences: 539616
Number of extensions: 5358857
Number of successful extensions: 11980
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11950
Number of HSP's gapped (non-prelim): 9
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)