Query psy672
Match_columns 314
No_of_seqs 181 out of 1625
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 16:40:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 96.6 0.0017 5.6E-08 40.5 3.2 43 35-78 2-44 (51)
2 2glo_A Brinker CG9653-PA; prot 96.2 0.0039 1.3E-07 40.9 3.7 47 35-82 2-52 (59)
3 2w7n_A TRFB transcriptional re 95.9 0.0074 2.5E-07 44.2 4.0 61 10-84 3-63 (101)
4 1jko_C HIN recombinase, DNA-in 95.3 0.005 1.7E-07 38.6 1.2 42 36-78 3-44 (52)
5 1jhg_A Trp operon repressor; c 95.3 0.0065 2.2E-07 44.5 1.7 45 39-84 36-86 (101)
6 2jn6_A Protein CGL2762, transp 94.9 0.017 5.7E-07 41.8 3.1 44 37-80 4-48 (97)
7 1tty_A Sigma-A, RNA polymerase 94.4 0.033 1.1E-06 39.5 3.6 48 38-85 18-68 (87)
8 1ku3_A Sigma factor SIGA; heli 94.3 0.039 1.3E-06 37.6 3.7 48 37-84 9-59 (73)
9 2p7v_B Sigma-70, RNA polymeras 94.2 0.024 8.2E-07 38.0 2.3 48 38-85 5-55 (68)
10 2o8x_A Probable RNA polymerase 94.1 0.042 1.4E-06 36.7 3.5 47 38-85 15-61 (70)
11 3hug_A RNA polymerase sigma fa 94.0 0.046 1.6E-06 39.1 3.7 49 38-87 37-85 (92)
12 2elh_A CG11849-PA, LD40883P; s 93.9 0.041 1.4E-06 39.0 3.2 45 37-82 21-65 (87)
13 3t72_q RNA polymerase sigma fa 93.5 0.061 2.1E-06 39.2 3.6 48 38-85 19-69 (99)
14 1u78_A TC3 transposase, transp 93.1 0.044 1.5E-06 42.1 2.5 44 35-79 3-46 (141)
15 2jrt_A Uncharacterized protein 93.0 0.078 2.7E-06 38.3 3.5 45 36-80 30-74 (95)
16 1j1v_A Chromosomal replication 92.8 0.076 2.6E-06 38.3 3.1 53 33-85 24-77 (94)
17 1fse_A GERE; helix-turn-helix 92.6 0.11 3.6E-06 35.1 3.6 46 37-84 10-55 (74)
18 1p4w_A RCSB; solution structur 92.0 0.2 6.7E-06 36.4 4.5 59 20-84 20-78 (99)
19 2x48_A CAG38821; archeal virus 91.9 0.073 2.5E-06 33.8 1.9 36 41-77 18-53 (55)
20 3c57_A Two component transcrip 91.9 0.13 4.5E-06 36.9 3.6 47 37-85 26-72 (95)
21 2jpc_A SSRB; DNA binding prote 91.9 0.1 3.5E-06 33.8 2.6 33 52-84 10-42 (61)
22 1k78_A Paired box protein PAX5 91.8 0.13 4.5E-06 40.0 3.7 44 37-81 31-74 (149)
23 1pdn_C Protein (PRD paired); p 91.8 0.13 4.6E-06 38.4 3.6 44 37-81 16-59 (128)
24 2rn7_A IS629 ORFA; helix, all 91.7 0.069 2.4E-06 39.3 1.9 44 36-79 4-54 (108)
25 1je8_A Nitrate/nitrite respons 91.6 0.099 3.4E-06 36.5 2.5 46 37-84 20-65 (82)
26 1hlv_A CENP-B, major centromer 90.8 0.17 5.8E-06 38.4 3.4 49 36-84 5-54 (131)
27 2rnj_A Response regulator prot 90.6 0.14 4.9E-06 36.3 2.6 45 38-84 29-73 (91)
28 2q1z_A RPOE, ECF SIGE; ECF sig 90.5 0.46 1.6E-05 37.9 5.9 46 39-85 136-181 (184)
29 1or7_A Sigma-24, RNA polymeras 90.3 0.23 7.9E-06 40.0 4.0 51 39-90 141-191 (194)
30 3pvv_A Chromosomal replication 90.3 0.21 7E-06 36.5 3.2 53 33-85 28-80 (101)
31 1x3u_A Transcriptional regulat 89.8 0.16 5.6E-06 34.7 2.3 44 39-84 17-60 (79)
32 3ulq_B Transcriptional regulat 89.7 0.24 8.3E-06 35.2 3.1 47 36-84 27-73 (90)
33 1rp3_A RNA polymerase sigma fa 89.6 0.29 1E-05 40.7 4.1 50 37-87 186-235 (239)
34 1s7o_A Hypothetical UPF0122 pr 89.4 0.26 8.8E-06 36.7 3.2 47 39-86 23-69 (113)
35 1xsv_A Hypothetical UPF0122 pr 87.8 0.38 1.3E-05 35.7 3.2 48 39-87 26-73 (113)
36 1u78_A TC3 transposase, transp 87.7 0.84 2.9E-05 34.6 5.3 70 8-78 30-102 (141)
37 3mzy_A RNA polymerase sigma-H 87.2 0.41 1.4E-05 37.2 3.3 48 38-87 109-156 (164)
38 2nnn_A Probable transcriptiona 87.2 0.84 2.9E-05 34.4 5.0 45 38-82 35-79 (140)
39 2k27_A Paired box protein PAX- 87.2 0.27 9.1E-06 38.7 2.2 42 36-78 23-64 (159)
40 3nrv_A Putative transcriptiona 83.7 1.1 3.8E-05 34.2 4.2 45 38-82 37-81 (148)
41 2heo_A Z-DNA binding protein 1 82.5 0.7 2.4E-05 30.7 2.2 40 42-81 12-51 (67)
42 2d1h_A ST1889, 109AA long hypo 82.3 0.83 2.8E-05 32.7 2.8 29 53-81 34-62 (109)
43 1qgp_A Protein (double strande 82.1 0.83 2.8E-05 31.3 2.5 40 42-81 16-57 (77)
44 2qvo_A Uncharacterized protein 81.7 0.78 2.7E-05 32.6 2.4 37 45-81 17-56 (95)
45 1oyi_A Double-stranded RNA-bin 81.7 0.44 1.5E-05 33.2 1.0 40 40-81 17-56 (82)
46 3frw_A Putative Trp repressor 81.5 0.58 2E-05 34.2 1.6 31 49-79 52-82 (107)
47 3ech_A MEXR, multidrug resista 81.2 1 3.4E-05 34.2 3.0 46 37-82 33-78 (142)
48 2oa4_A SIR5; structure, struct 81.1 0.99 3.4E-05 32.8 2.7 43 39-81 34-76 (101)
49 1iuf_A Centromere ABP1 protein 81.0 0.35 1.2E-05 37.6 0.3 47 35-81 8-62 (144)
50 1zx4_A P1 PARB, plasmid partit 81.0 1 3.4E-05 36.8 3.0 41 39-79 8-48 (192)
51 1l0o_C Sigma factor; bergerat 80.9 0.32 1.1E-05 40.5 0.0 45 38-83 198-242 (243)
52 2lkp_A Transcriptional regulat 80.6 2.1 7E-05 31.6 4.5 62 8-81 10-71 (119)
53 3kor_A Possible Trp repressor; 79.5 0.99 3.4E-05 33.7 2.3 33 46-78 66-98 (119)
54 1qbj_A Protein (double-strande 79.4 1.3 4.4E-05 30.7 2.8 40 42-81 12-53 (81)
55 4dyq_A Gene 1 protein; GP1, oc 79.2 1.2 4.1E-05 34.3 2.9 45 33-78 7-52 (140)
56 2ao9_A Phage protein; structur 79.2 1.6 5.5E-05 34.3 3.6 54 38-91 23-87 (155)
57 3r0a_A Putative transcriptiona 78.6 0.79 2.7E-05 34.4 1.6 41 42-82 28-69 (123)
58 2jt1_A PEFI protein; solution 78.6 1.3 4.6E-05 30.3 2.6 27 55-81 24-50 (77)
59 2lfw_A PHYR sigma-like domain; 78.3 0.85 2.9E-05 35.6 1.8 49 38-87 93-141 (157)
60 2cob_A LCOR protein; MLR2, KIA 78.0 1.4 4.7E-05 29.5 2.4 39 40-78 14-53 (70)
61 3mky_B Protein SOPB; partition 77.8 1.4 4.6E-05 35.8 2.8 44 36-79 21-66 (189)
62 1y0u_A Arsenical resistance op 77.4 0.94 3.2E-05 32.2 1.7 30 53-82 41-70 (96)
63 2hr3_A Probable transcriptiona 76.8 0.87 3E-05 34.7 1.4 29 53-81 48-76 (147)
64 2dk5_A DNA-directed RNA polyme 76.4 2 6.9E-05 30.4 3.1 47 35-81 14-62 (91)
65 1sfx_A Conserved hypothetical 76.3 2.2 7.5E-05 30.3 3.5 38 44-82 24-61 (109)
66 1uxc_A FRUR (1-57), fructose r 76.3 0.54 1.8E-05 31.2 0.0 21 57-77 2-22 (65)
67 1l9z_H Sigma factor SIGA; heli 76.1 1.8 6.2E-05 40.1 3.6 47 38-84 375-424 (438)
68 2x4h_A Hypothetical protein SS 75.9 1.4 4.7E-05 33.4 2.4 41 42-82 15-58 (139)
69 1tbx_A ORF F-93, hypothetical 75.9 2.1 7.1E-05 30.4 3.2 29 54-82 21-53 (99)
70 3clo_A Transcriptional regulat 75.6 1.7 5.9E-05 37.0 3.1 47 37-85 196-242 (258)
71 2a6h_F RNA polymerase sigma fa 75.4 2.1 7.3E-05 39.4 3.9 47 38-84 360-409 (423)
72 1ku9_A Hypothetical protein MJ 75.1 1.1 3.6E-05 34.2 1.5 42 39-81 24-67 (152)
73 2l1p_A DNA-binding protein SAT 74.9 1.4 4.7E-05 30.5 1.8 33 45-77 22-54 (83)
74 2cw1_A SN4M; lambda CRO fold, 74.9 1.1 3.8E-05 29.7 1.3 24 53-76 11-34 (65)
75 3g3z_A NMB1585, transcriptiona 74.9 2.3 8E-05 32.2 3.5 45 37-81 27-71 (145)
76 2pij_A Prophage PFL 6 CRO; tra 74.4 1.1 3.9E-05 29.1 1.3 25 51-76 10-34 (67)
77 4aik_A Transcriptional regulat 73.8 1.8 6.1E-05 33.5 2.5 44 38-81 28-72 (151)
78 2gxg_A 146AA long hypothetical 73.8 2.3 7.9E-05 32.1 3.2 43 38-81 34-76 (146)
79 3dv8_A Transcriptional regulat 73.6 2 7E-05 34.8 3.0 45 38-82 145-196 (220)
80 1l3l_A Transcriptional activat 73.6 2.8 9.5E-05 35.0 3.9 47 36-84 171-217 (234)
81 2rdp_A Putative transcriptiona 73.0 3 0.0001 31.7 3.6 45 37-81 38-82 (150)
82 1on2_A Transcriptional regulat 72.8 1.9 6.5E-05 32.8 2.4 39 43-81 7-48 (142)
83 2q0o_A Probable transcriptiona 72.7 2.6 8.8E-05 35.2 3.5 46 37-84 174-219 (236)
84 3oop_A LIN2960 protein; protei 72.7 2.6 8.9E-05 31.8 3.2 46 36-81 32-77 (143)
85 2fbi_A Probable transcriptiona 72.6 2.5 8.7E-05 31.6 3.1 44 38-81 33-76 (142)
86 3bpv_A Transcriptional regulat 72.5 2.8 9.5E-05 31.3 3.3 44 38-81 26-69 (138)
87 3tgn_A ADC operon repressor AD 72.3 4.9 0.00017 30.3 4.7 44 37-81 34-77 (146)
88 1jgs_A Multiple antibiotic res 72.2 3.3 0.00011 30.9 3.7 46 37-82 30-75 (138)
89 2fbh_A Transcriptional regulat 72.2 2 7E-05 32.4 2.5 44 38-81 34-78 (146)
90 1r1u_A CZRA, repressor protein 72.1 2.2 7.6E-05 30.8 2.6 30 53-82 37-66 (106)
91 1z91_A Organic hydroperoxide r 71.7 2.9 0.0001 31.6 3.3 46 37-82 36-81 (147)
92 2pex_A Transcriptional regulat 71.6 2.7 9.3E-05 32.1 3.1 46 36-81 42-87 (153)
93 2l0k_A Stage III sporulation p 71.3 1.6 5.3E-05 31.2 1.5 26 53-78 18-43 (93)
94 2htj_A P fimbrial regulatory p 71.1 2.8 9.6E-05 28.6 2.8 28 55-82 14-41 (81)
95 3bro_A Transcriptional regulat 71.1 3.6 0.00012 30.8 3.7 44 38-81 31-76 (141)
96 2frh_A SARA, staphylococcal ac 70.8 2.5 8.5E-05 31.5 2.7 43 38-81 34-79 (127)
97 2a61_A Transcriptional regulat 70.7 3.3 0.00011 31.1 3.4 44 38-81 30-73 (145)
98 3szt_A QCSR, quorum-sensing co 70.5 2.8 9.4E-05 35.2 3.1 48 35-84 172-219 (237)
99 3cuo_A Uncharacterized HTH-typ 70.2 1.7 5.8E-05 30.6 1.5 27 55-81 38-64 (99)
100 3bdd_A Regulatory protein MARR 70.1 3.4 0.00011 30.9 3.3 44 38-81 28-71 (142)
101 2oqg_A Possible transcriptiona 69.6 2.4 8.3E-05 30.7 2.3 39 42-82 23-61 (114)
102 1q1h_A TFE, transcription fact 69.4 3.2 0.00011 30.0 2.9 28 55-82 33-60 (110)
103 2kko_A Possible transcriptiona 69.0 1.8 6.1E-05 31.5 1.4 39 43-83 28-66 (108)
104 3fm5_A Transcriptional regulat 69.0 2.5 8.6E-05 32.2 2.4 44 38-81 36-80 (150)
105 1r71_A Transcriptional repress 68.9 2.8 9.5E-05 33.8 2.6 42 36-77 33-74 (178)
106 2eth_A Transcriptional regulat 68.8 3.5 0.00012 31.6 3.2 44 38-81 41-84 (154)
107 3ryp_A Catabolite gene activat 68.7 2.7 9.2E-05 33.8 2.6 43 39-81 138-193 (210)
108 2pg4_A Uncharacterized protein 68.3 1.9 6.4E-05 30.4 1.4 40 43-82 15-58 (95)
109 2fmy_A COOA, carbon monoxide o 68.2 2.4 8.3E-05 34.5 2.2 44 39-82 137-194 (220)
110 3deu_A Transcriptional regulat 68.1 2.9 9.8E-05 32.8 2.6 46 36-81 48-94 (166)
111 1fx7_A Iron-dependent represso 68.0 3.4 0.00012 34.5 3.1 42 41-82 7-51 (230)
112 3cjn_A Transcriptional regulat 67.9 3.1 0.00011 32.1 2.8 44 38-81 49-92 (162)
113 1zyb_A Transcription regulator 67.9 2.7 9.3E-05 34.7 2.5 46 36-81 159-212 (232)
114 3hot_A Transposable element ma 67.9 26 0.0009 30.5 9.3 157 9-173 35-219 (345)
115 4hbl_A Transcriptional regulat 67.8 3.4 0.00011 31.5 2.9 45 37-81 37-81 (149)
116 3eco_A MEPR; mutlidrug efflux 67.8 3.3 0.00011 31.0 2.8 44 38-81 28-73 (139)
117 3k0l_A Repressor protein; heli 67.7 3.6 0.00012 31.9 3.1 45 37-81 42-86 (162)
118 3b02_A Transcriptional regulat 67.7 4.1 0.00014 32.5 3.5 45 38-82 109-166 (195)
119 2hin_A GP39, repressor protein 67.7 1.7 5.7E-05 29.4 0.9 22 57-78 12-33 (71)
120 1lj9_A Transcriptional regulat 67.6 2.6 9E-05 31.7 2.2 42 39-81 27-69 (144)
121 2fa5_A Transcriptional regulat 67.6 4 0.00014 31.5 3.3 44 38-82 46-90 (162)
122 1rzs_A Antirepressor, regulato 67.4 0.61 2.1E-05 30.3 -1.3 23 54-76 9-31 (61)
123 2w48_A Sorbitol operon regulat 67.4 3.3 0.00011 36.4 3.1 37 45-81 11-47 (315)
124 3bja_A Transcriptional regulat 67.1 2 6.9E-05 32.1 1.4 44 38-81 30-73 (139)
125 2zcw_A TTHA1359, transcription 66.9 3.7 0.00013 32.9 3.1 44 39-82 117-173 (202)
126 3bj6_A Transcriptional regulat 66.9 3.6 0.00012 31.3 2.9 44 38-81 37-80 (152)
127 2qww_A Transcriptional regulat 66.8 3.4 0.00012 31.5 2.8 43 38-81 38-81 (154)
128 3jw4_A Transcriptional regulat 66.8 3.8 0.00013 31.1 3.0 45 38-82 38-84 (148)
129 3iyd_F RNA polymerase sigma fa 66.8 3.2 0.00011 40.2 3.1 48 38-85 550-600 (613)
130 3f6o_A Probable transcriptiona 66.7 3.1 0.0001 30.7 2.3 31 53-83 29-59 (118)
131 1s3j_A YUSO protein; structura 66.7 3.3 0.00011 31.7 2.6 44 38-81 34-77 (155)
132 1zs4_A Regulatory protein CII; 66.4 2.4 8.1E-05 29.5 1.5 33 47-80 17-49 (83)
133 2oz6_A Virulence factor regula 66.4 3.2 0.00011 33.2 2.6 44 38-81 134-190 (207)
134 2nyx_A Probable transcriptiona 66.0 4.2 0.00014 31.8 3.2 44 38-81 42-85 (168)
135 3iwz_A CAP-like, catabolite ac 65.9 3.9 0.00013 33.4 3.1 44 38-81 157-213 (230)
136 2l8n_A Transcriptional repress 65.8 0.69 2.3E-05 30.9 -1.3 22 56-77 10-31 (67)
137 3la7_A Global nitrogen regulat 65.8 3.7 0.00013 34.1 2.9 44 38-81 162-219 (243)
138 2ia0_A Putative HTH-type trans 65.8 4.4 0.00015 32.1 3.3 46 37-82 13-58 (171)
139 2cyy_A Putative HTH-type trans 65.7 5.5 0.00019 30.6 3.8 29 54-82 20-48 (151)
140 3uj3_X DNA-invertase; helix-tu 65.7 1.3 4.3E-05 36.0 0.0 36 44-79 147-182 (193)
141 2cfx_A HTH-type transcriptiona 64.8 5 0.00017 30.6 3.3 28 54-81 18-45 (144)
142 1wy3_A Villin; structural prot 64.8 0.96 3.3E-05 26.0 -0.6 22 2-24 2-23 (35)
143 2w25_A Probable transcriptiona 64.6 4.9 0.00017 30.8 3.3 28 54-81 20-47 (150)
144 2jsc_A Transcriptional regulat 64.5 3.5 0.00012 30.4 2.3 30 53-82 32-61 (118)
145 1i1g_A Transcriptional regulat 64.3 4.4 0.00015 30.6 2.9 29 54-82 17-45 (141)
146 4ev0_A Transcription regulator 64.1 3.2 0.00011 33.5 2.2 44 39-82 140-190 (216)
147 1mkm_A ICLR transcriptional re 64.1 4.2 0.00014 34.3 3.0 44 39-82 4-50 (249)
148 3e6m_A MARR family transcripti 64.0 4 0.00014 31.6 2.7 44 38-81 50-93 (161)
149 2cg4_A Regulatory protein ASNC 63.9 5.5 0.00019 30.6 3.5 29 54-82 21-49 (152)
150 1p6r_A Penicillinase repressor 63.4 5.6 0.00019 27.0 3.0 44 38-82 6-54 (82)
151 2dbb_A Putative HTH-type trans 63.2 5.9 0.0002 30.4 3.5 29 54-82 22-50 (151)
152 3jth_A Transcription activator 63.0 2 7E-05 30.4 0.7 33 50-82 30-63 (98)
153 1u2w_A CADC repressor, cadmium 62.7 2.8 9.6E-05 31.2 1.5 29 54-82 55-83 (122)
154 3dkw_A DNR protein; CRP-FNR, H 62.7 4.5 0.00015 32.9 2.9 44 39-82 151-205 (227)
155 3cdh_A Transcriptional regulat 62.6 4.2 0.00014 31.1 2.5 44 38-81 40-83 (155)
156 4ghj_A Probable transcriptiona 62.6 3.7 0.00013 29.6 2.0 37 41-77 33-71 (101)
157 3s2w_A Transcriptional regulat 62.4 3.5 0.00012 31.8 2.0 43 38-81 47-90 (159)
158 3bd1_A CRO protein; transcript 62.2 2.5 8.7E-05 28.5 1.0 25 53-78 10-34 (79)
159 2fxa_A Protease production reg 61.9 7.9 0.00027 31.6 4.2 45 37-81 44-88 (207)
160 2xi8_A Putative transcription 61.9 2 6.7E-05 27.5 0.4 26 52-77 11-36 (66)
161 3qp6_A CVIR transcriptional re 61.8 7.7 0.00026 33.1 4.3 46 37-84 196-241 (265)
162 2bv6_A MGRA, HTH-type transcri 61.7 3.1 0.0001 31.3 1.5 44 39-82 35-78 (142)
163 3kp7_A Transcriptional regulat 61.6 4.2 0.00014 31.0 2.3 43 38-81 35-77 (151)
164 3fmy_A HTH-type transcriptiona 61.4 2.1 7E-05 28.6 0.4 28 50-77 19-46 (73)
165 3f6v_A Possible transcriptiona 61.4 3.2 0.00011 32.4 1.6 30 53-82 69-98 (151)
166 4ham_A LMO2241 protein; struct 61.3 6.6 0.00023 29.6 3.4 45 35-79 9-62 (134)
167 1r1t_A Transcriptional repress 61.2 4.4 0.00015 30.2 2.3 29 54-82 58-86 (122)
168 1okr_A MECI, methicillin resis 61.0 5.7 0.00019 29.1 2.9 44 38-82 7-55 (123)
169 1sfu_A 34L protein; protein/Z- 61.0 4.8 0.00016 27.3 2.2 41 39-79 11-53 (75)
170 1ub9_A Hypothetical protein PH 60.9 4.7 0.00016 28.2 2.4 29 54-82 29-57 (100)
171 1ft9_A Carbon monoxide oxidati 60.8 3.7 0.00013 33.4 2.0 44 39-82 133-190 (222)
172 3f3x_A Transcriptional regulat 60.8 4.8 0.00016 30.3 2.5 29 54-82 49-77 (144)
173 2p5k_A Arginine repressor; DNA 60.7 4.6 0.00016 25.8 2.1 35 43-77 5-46 (64)
174 3omt_A Uncharacterized protein 60.7 2.1 7.1E-05 28.3 0.3 26 52-77 18-43 (73)
175 1zug_A Phage 434 CRO protein; 60.6 2.1 7.2E-05 27.9 0.4 26 52-77 13-38 (71)
176 1und_A Advillin, P92; actin bi 60.6 1.3 4.3E-05 25.8 -0.6 21 2-23 4-24 (37)
177 2p5v_A Transcriptional regulat 60.6 6.3 0.00022 30.7 3.3 29 54-82 23-51 (162)
178 2hzt_A Putative HTH-type trans 60.6 4.7 0.00016 29.1 2.4 30 53-82 25-55 (107)
179 3e6c_C CPRK, cyclic nucleotide 60.5 5.3 0.00018 33.2 3.0 45 38-82 146-204 (250)
180 2fu4_A Ferric uptake regulatio 60.4 7.2 0.00025 26.4 3.2 28 55-82 33-65 (83)
181 3pqk_A Biofilm growth-associat 60.3 2.9 0.0001 29.8 1.1 29 54-82 35-63 (102)
182 1neq_A DNA-binding protein NER 60.3 2.6 9E-05 28.5 0.8 33 43-77 12-44 (74)
183 3u2r_A Regulatory protein MARR 59.9 4.4 0.00015 31.6 2.2 45 37-81 42-88 (168)
184 3kcc_A Catabolite gene activat 59.7 5 0.00017 33.8 2.7 43 39-81 188-243 (260)
185 1r69_A Repressor protein CI; g 59.7 2.2 7.7E-05 27.5 0.4 27 51-77 10-36 (69)
186 3qq6_A HTH-type transcriptiona 58.6 3.2 0.00011 28.0 1.1 30 49-78 17-46 (78)
187 3d0s_A Transcriptional regulat 58.5 6.7 0.00023 31.9 3.2 44 39-82 147-204 (227)
188 3nqo_A MARR-family transcripti 58.5 6.4 0.00022 31.5 3.0 43 39-81 39-83 (189)
189 3hsr_A HTH-type transcriptiona 58.2 2.8 9.7E-05 31.6 0.8 42 38-81 33-76 (140)
190 2pn6_A ST1022, 150AA long hypo 58.1 5.5 0.00019 30.5 2.5 28 55-82 17-44 (150)
191 3eus_A DNA-binding protein; st 58.1 3.6 0.00012 28.3 1.3 33 45-77 15-49 (86)
192 2ovg_A Phage lambda CRO; trans 58.0 1.7 5.9E-05 28.8 -0.5 21 57-77 15-35 (66)
193 3kz3_A Repressor protein CI; f 57.9 2.5 8.4E-05 28.6 0.3 25 53-77 23-47 (80)
194 2xrn_A HTH-type transcriptiona 57.8 5.1 0.00017 33.7 2.4 43 40-82 3-48 (241)
195 2a6c_A Helix-turn-helix motif; 57.8 3 0.0001 28.5 0.8 26 52-77 28-53 (83)
196 2vn2_A DNAD, chromosome replic 57.7 7.5 0.00026 29.1 3.1 46 37-82 28-78 (128)
197 1vz0_A PARB, chromosome partit 57.6 6.6 0.00022 32.9 3.0 41 37-77 116-156 (230)
198 2wiu_B HTH-type transcriptiona 57.4 4 0.00014 27.9 1.4 26 52-77 22-47 (88)
199 2b5a_A C.BCLI; helix-turn-heli 57.1 3.3 0.00011 27.4 0.9 26 52-77 20-45 (77)
200 3fx3_A Cyclic nucleotide-bindi 57.0 8.1 0.00028 31.6 3.5 46 37-82 150-205 (237)
201 2qq9_A Diphtheria toxin repres 56.9 5.5 0.00019 33.1 2.4 42 41-82 7-51 (226)
202 2wte_A CSA3; antiviral protein 56.8 8 0.00027 32.7 3.4 30 53-82 164-193 (244)
203 2e1c_A Putative HTH-type trans 56.5 8.1 0.00028 30.6 3.3 45 38-82 24-68 (171)
204 2r1j_L Repressor protein C2; p 56.2 3.2 0.00011 26.6 0.7 26 52-77 15-40 (68)
205 2v79_A DNA replication protein 56.2 11 0.00039 28.6 3.9 29 54-82 50-78 (135)
206 3boq_A Transcriptional regulat 55.7 3.6 0.00012 31.6 1.0 45 38-82 44-89 (160)
207 2h09_A Transcriptional regulat 55.5 6.9 0.00023 30.1 2.6 30 53-82 52-81 (155)
208 2k9q_A Uncharacterized protein 55.5 2.8 9.7E-05 28.0 0.3 27 51-77 11-37 (77)
209 2zkz_A Transcriptional repress 55.0 4.6 0.00016 28.7 1.4 40 43-82 28-68 (99)
210 4b8x_A SCO5413, possible MARR- 54.6 6.5 0.00022 30.0 2.3 44 38-81 32-77 (147)
211 1xn7_A Hypothetical protein YH 54.6 8 0.00027 26.4 2.5 27 55-81 16-42 (78)
212 1yyv_A Putative transcriptiona 54.3 6.4 0.00022 29.7 2.2 35 48-82 40-76 (131)
213 3b7h_A Prophage LP1 protein 11 54.2 4.2 0.00015 26.9 1.1 26 52-77 17-42 (78)
214 2f2e_A PA1607; transcription f 54.1 6.5 0.00022 30.2 2.3 30 54-83 36-65 (146)
215 1y7y_A C.AHDI; helix-turn-heli 53.8 4 0.00014 26.7 0.9 26 52-77 23-48 (74)
216 3e97_A Transcriptional regulat 53.8 7.4 0.00025 31.7 2.7 43 40-82 146-202 (231)
217 3bs3_A Putative DNA-binding pr 53.6 3.3 0.00011 27.4 0.4 26 52-77 20-45 (76)
218 3plo_X DNA-invertase; resolvas 53.3 2.8 9.6E-05 33.9 0.0 39 45-83 148-186 (193)
219 1o5l_A Transcriptional regulat 52.8 2.9 9.9E-05 34.0 0.0 45 38-82 140-191 (213)
220 1adr_A P22 C2 repressor; trans 52.7 3.9 0.00013 26.9 0.7 26 52-77 15-40 (76)
221 3f6w_A XRE-family like protein 52.6 4.2 0.00014 27.5 0.8 26 52-77 24-49 (83)
222 2ppx_A AGR_C_3184P, uncharacte 52.5 4.6 0.00016 28.6 1.1 27 51-77 39-65 (99)
223 3s8q_A R-M controller protein; 52.2 4.7 0.00016 27.1 1.1 34 44-77 11-46 (82)
224 1z7u_A Hypothetical protein EF 51.9 9.4 0.00032 27.7 2.7 37 44-82 26-63 (112)
225 3o9x_A Uncharacterized HTH-typ 51.9 3.6 0.00012 30.9 0.4 28 50-77 79-106 (133)
226 3t76_A VANU, transcriptional r 51.6 3.6 0.00012 28.8 0.4 27 51-77 33-59 (88)
227 2ewt_A BLDD, putative DNA-bind 51.6 5 0.00017 26.0 1.1 26 52-77 18-45 (71)
228 1j5y_A Transcriptional regulat 51.5 8 0.00027 31.0 2.5 40 42-81 20-62 (187)
229 3df8_A Possible HXLR family tr 51.2 8.1 0.00028 28.1 2.3 35 48-82 32-70 (111)
230 2k4b_A Transcriptional regulat 51.1 6.8 0.00023 28.1 1.8 44 38-82 32-80 (99)
231 1lmb_3 Protein (lambda repress 50.3 3.8 0.00013 28.3 0.3 26 52-77 27-52 (92)
232 2ofy_A Putative XRE-family tra 50.2 8.1 0.00028 26.2 2.0 33 45-77 17-49 (86)
233 2kpj_A SOS-response transcript 50.1 4.5 0.00015 28.2 0.7 25 53-77 20-44 (94)
234 1ntc_A Protein (nitrogen regul 49.8 12 0.00042 26.1 3.0 28 52-79 61-88 (91)
235 2g7u_A Transcriptional regulat 49.8 7.5 0.00026 32.9 2.2 45 38-82 9-56 (257)
236 2obp_A Putative DNA-binding pr 49.4 8.7 0.0003 27.4 2.1 45 38-82 13-63 (96)
237 1z4h_A TORI, TOR inhibition pr 49.2 3.9 0.00013 26.8 0.2 22 57-78 12-33 (66)
238 2ef8_A C.ECOT38IS, putative tr 49.1 5.7 0.00019 26.7 1.1 25 53-77 21-45 (84)
239 2gau_A Transcriptional regulat 49.1 11 0.00036 30.8 2.9 43 39-81 151-206 (232)
240 1gdt_A GD resolvase, protein ( 48.7 4.8 0.00016 32.2 0.7 28 50-77 153-180 (183)
241 2o0y_A Transcriptional regulat 48.6 5.6 0.00019 33.8 1.1 45 38-82 18-65 (260)
242 1a04_A Nitrate/nitrite respons 48.4 8.6 0.0003 30.9 2.3 44 39-84 155-198 (215)
243 3hrs_A Metalloregulator SCAR; 48.4 9.8 0.00033 31.3 2.6 41 42-82 4-47 (214)
244 2g9w_A Conserved hypothetical 48.3 5.5 0.00019 30.2 1.0 43 39-81 7-54 (138)
245 2ict_A Antitoxin HIGA; helix-t 48.2 5 0.00017 27.9 0.7 28 51-78 17-44 (94)
246 1sd4_A Penicillinase repressor 48.2 12 0.00041 27.4 2.9 44 38-82 7-55 (126)
247 2fsw_A PG_0823 protein; alpha- 47.8 8.4 0.00029 27.7 1.9 30 53-82 36-66 (107)
248 3k2z_A LEXA repressor; winged 47.3 11 0.00038 30.4 2.8 27 55-81 24-50 (196)
249 1xwr_A Regulatory protein CII; 47.2 4.8 0.00016 28.9 0.4 25 56-80 24-48 (97)
250 2b0l_A GTP-sensing transcripti 46.7 5.6 0.00019 28.7 0.7 25 57-81 45-69 (102)
251 1j9i_A GPNU1 DBD;, terminase s 46.6 2.3 7.9E-05 28.0 -1.3 22 57-78 4-25 (68)
252 1qpz_A PURA, protein (purine n 46.6 4.2 0.00014 35.6 0.0 22 57-78 2-23 (340)
253 2k02_A Ferrous iron transport 46.5 8.3 0.00028 27.0 1.6 26 55-80 16-41 (87)
254 2o38_A Hypothetical protein; a 46.5 9.5 0.00032 28.3 2.0 33 45-77 41-75 (120)
255 1x57_A Endothelial differentia 46.4 7.4 0.00025 26.8 1.3 28 50-77 21-48 (91)
256 3vk0_A NHTF, transcriptional r 46.3 10 0.00035 27.5 2.2 38 40-77 17-56 (114)
257 2o20_A Catabolite control prot 46.3 4.2 0.00014 35.5 0.0 23 56-78 6-28 (332)
258 3ctp_A Periplasmic binding pro 46.3 4.2 0.00014 35.4 0.0 22 57-78 4-25 (330)
259 2r0q_C Putative transposon TN5 46.0 5.9 0.0002 32.4 0.9 31 48-78 168-198 (209)
260 4fx0_A Probable transcriptiona 46.0 13 0.00043 28.4 2.7 26 56-81 53-78 (148)
261 2auw_A Hypothetical protein NE 45.7 5.4 0.00018 31.8 0.5 29 49-77 97-125 (170)
262 1k78_A Paired box protein PAX5 45.7 29 0.001 26.1 4.9 70 8-79 56-142 (149)
263 3cta_A Riboflavin kinase; stru 45.6 10 0.00035 31.4 2.4 26 56-81 28-53 (230)
264 3cec_A Putative antidote prote 45.6 4.7 0.00016 28.7 0.1 27 51-77 27-53 (104)
265 3kxa_A NGO0477 protein, putati 45.5 8.3 0.00028 29.5 1.6 29 50-78 76-104 (141)
266 3bil_A Probable LACI-family tr 45.2 4.5 0.00015 35.7 0.0 22 57-78 10-31 (348)
267 3f52_A CLP gene regulator (CLG 45.1 11 0.00037 27.4 2.1 38 40-77 24-63 (117)
268 3h5o_A Transcriptional regulat 44.9 4.6 0.00016 35.3 0.0 23 56-78 5-27 (339)
269 2hsg_A Glucose-resistance amyl 44.9 4.1 0.00014 35.5 -0.3 23 56-78 3-25 (332)
270 3dn7_A Cyclic nucleotide bindi 44.8 4.6 0.00016 32.0 0.0 42 39-80 149-193 (194)
271 3e7l_A Transcriptional regulat 44.8 13 0.00044 23.9 2.2 26 53-78 30-55 (63)
272 3trb_A Virulence-associated pr 44.7 5.2 0.00018 28.9 0.3 38 39-77 12-49 (104)
273 1uly_A Hypothetical protein PH 44.4 8.4 0.00029 31.2 1.5 38 42-81 22-59 (192)
274 1jye_A Lactose operon represso 44.4 4.7 0.00016 35.5 0.0 24 56-79 4-27 (349)
275 2l49_A C protein; P2 bacteriop 44.2 7.4 0.00025 27.2 1.1 27 51-77 13-39 (99)
276 3dbi_A Sugar-binding transcrip 44.0 4.8 0.00016 35.1 0.0 23 56-78 4-26 (338)
277 3jvd_A Transcriptional regulat 44.0 4.8 0.00016 35.2 0.0 23 56-78 7-29 (333)
278 2ia2_A Putative transcriptiona 43.6 8 0.00027 32.9 1.3 45 38-82 16-63 (265)
279 3g5g_A Regulatory protein; tra 43.5 7.7 0.00026 27.5 1.1 37 41-77 25-63 (99)
280 3tqn_A Transcriptional regulat 43.3 7 0.00024 28.5 0.8 26 57-82 35-60 (113)
281 3i4p_A Transcriptional regulat 43.3 13 0.00045 28.9 2.5 28 55-82 17-44 (162)
282 3c3w_A Two component transcrip 43.3 9.5 0.00032 31.1 1.8 46 37-84 148-193 (225)
283 3op9_A PLI0006 protein; struct 43.2 8.1 0.00028 27.9 1.2 27 51-77 18-44 (114)
284 2bgc_A PRFA; bacterial infecti 42.7 10 0.00036 31.1 1.9 44 39-82 138-197 (238)
285 3e3m_A Transcriptional regulat 42.6 5.2 0.00018 35.3 0.0 22 57-78 14-35 (355)
286 2qlz_A Transcription factor PF 42.5 29 0.00098 29.0 4.6 29 54-82 24-52 (232)
287 3oou_A LIN2118 protein; protei 42.0 16 0.00055 26.0 2.7 29 52-80 18-46 (108)
288 2ijl_A AGR_C_4647P, molybdenum 41.8 9.7 0.00033 29.0 1.4 38 48-85 31-68 (135)
289 2ek5_A Predicted transcription 41.3 32 0.0011 25.7 4.3 21 58-78 31-51 (129)
290 1b0n_A Protein (SINR protein); 41.3 8.1 0.00028 27.6 0.9 28 51-78 10-37 (111)
291 3mlf_A Transcriptional regulat 41.3 10 0.00034 27.5 1.4 28 50-77 31-58 (111)
292 3h5t_A Transcriptional regulat 41.2 5.5 0.00019 35.2 -0.1 22 56-77 10-31 (366)
293 3isp_A HTH-type transcriptiona 41.2 17 0.00056 30.7 3.0 44 46-89 11-55 (303)
294 3r4k_A Transcriptional regulat 41.0 7.6 0.00026 33.0 0.8 44 40-83 3-49 (260)
295 2gqq_A Leucine-responsive regu 40.7 10 0.00036 29.5 1.5 29 53-81 25-53 (163)
296 2p5t_A Putative transcriptiona 40.6 5.8 0.0002 30.8 0.0 25 52-76 11-35 (158)
297 3bdn_A Lambda repressor; repre 40.5 15 0.00051 30.3 2.6 34 45-78 18-53 (236)
298 3ic7_A Putative transcriptiona 40.4 12 0.0004 28.0 1.7 25 57-81 37-61 (126)
299 2di3_A Bacterial regulatory pr 40.3 44 0.0015 27.5 5.5 52 12-80 1-53 (239)
300 2fbk_A Transcriptional regulat 40.0 11 0.00036 29.8 1.5 45 38-82 66-113 (181)
301 2opt_A Actii protein; helical 39.7 16 0.00056 30.2 2.7 51 37-87 4-58 (234)
302 3hhg_A Transcriptional regulat 39.5 16 0.00056 30.7 2.7 39 47-85 9-47 (306)
303 3ivp_A Putative transposon-rel 39.3 9 0.00031 28.3 0.9 27 51-77 21-47 (126)
304 3b73_A PHIH1 repressor-like pr 38.9 21 0.00072 26.1 2.8 40 42-82 15-56 (111)
305 3n0r_A Response regulator; sig 38.8 14 0.00049 31.6 2.3 48 39-87 112-159 (286)
306 2vof_A BCL-2-related protein A 38.8 17 0.0006 28.3 2.5 72 12-85 6-85 (157)
307 3kjx_A Transcriptional regulat 38.7 4.9 0.00017 35.2 -0.8 23 56-78 11-33 (344)
308 4a5n_A Uncharacterized HTH-typ 38.5 17 0.00057 27.5 2.3 30 53-82 37-67 (131)
309 1yio_A Response regulatory pro 38.5 12 0.00042 29.7 1.7 44 39-84 143-186 (208)
310 2eby_A Putative HTH-type trans 38.4 6.2 0.00021 28.5 -0.2 26 52-77 21-46 (113)
311 1qzp_A Dematin; villin headpie 38.4 5.1 0.00017 26.7 -0.6 21 3-24 36-56 (68)
312 3neu_A LIN1836 protein; struct 38.4 8.9 0.0003 28.6 0.7 25 57-81 39-63 (125)
313 3mn2_A Probable ARAC family tr 38.1 19 0.00065 25.6 2.5 28 52-79 15-42 (108)
314 3by6_A Predicted transcription 37.9 9.5 0.00033 28.5 0.8 24 57-80 37-60 (126)
315 2jvl_A TRMBF1; coactivator, he 37.4 21 0.0007 25.6 2.6 34 44-77 34-71 (107)
316 1ixc_A CBNR, LYSR-type regulat 37.2 15 0.0005 30.8 2.1 35 51-85 11-45 (294)
317 3hot_A Transposable element ma 36.8 19 0.00066 31.4 2.8 37 45-81 12-55 (345)
318 1rr7_A Middle operon regulator 36.5 9.8 0.00033 28.7 0.7 29 54-82 91-119 (129)
319 1ujs_A Actin-binding LIM prote 36.3 6.8 0.00023 27.5 -0.2 27 2-29 49-75 (88)
320 2o0m_A Transcriptional regulat 36.3 7.5 0.00026 34.6 0.0 39 43-82 23-61 (345)
321 1yu8_X Villin; alpha helix, 3- 35.9 5.4 0.00019 26.5 -0.7 21 3-24 35-55 (67)
322 2wus_R RODZ, putative uncharac 35.6 10 0.00035 27.7 0.7 27 51-77 16-42 (112)
323 3mq0_A Transcriptional repress 35.6 12 0.00041 32.0 1.2 45 38-82 25-72 (275)
324 3m8j_A FOCB protein; all-alpha 35.3 62 0.0021 23.6 4.8 42 39-80 44-85 (111)
325 3klo_A Transcriptional regulat 35.2 15 0.00051 29.8 1.7 43 39-83 160-202 (225)
326 1umq_A Photosynthetic apparatu 34.5 18 0.00062 24.8 1.7 27 52-78 51-77 (81)
327 3fxq_A LYSR type regulator of 34.3 21 0.0007 30.2 2.5 35 51-85 12-46 (305)
328 2k6m_S Supervillin; SVHP, HP, 34.1 5.5 0.00019 26.4 -0.9 21 3-24 35-55 (67)
329 2p8t_A Hypothetical protein PH 33.4 23 0.0008 28.8 2.5 41 42-82 17-57 (200)
330 3szp_A Transcriptional regulat 32.9 19 0.00065 29.8 2.1 38 48-85 8-45 (291)
331 2esn_A Probable transcriptiona 32.8 17 0.00058 30.8 1.7 41 44-85 14-54 (310)
332 1u8b_A ADA polyprotein; protei 32.6 23 0.00077 26.3 2.2 39 42-80 78-118 (133)
333 1ic8_A Hepatocyte nuclear fact 32.4 13 0.00046 30.1 0.9 27 51-77 39-65 (194)
334 3lfp_A CSP231I C protein; tran 31.6 18 0.0006 25.2 1.4 27 51-77 10-40 (98)
335 2y75_A HTH-type transcriptiona 31.4 23 0.00079 26.2 2.1 27 56-82 27-53 (129)
336 2p4w_A Transcriptional regulat 31.3 22 0.00076 28.9 2.1 29 53-81 26-54 (202)
337 1jhf_A LEXA repressor; LEXA SO 31.0 30 0.001 27.7 2.9 27 54-80 22-51 (202)
338 2o3f_A Putative HTH-type trans 31.0 19 0.00064 26.2 1.4 24 55-78 39-62 (111)
339 1r7j_A Conserved hypothetical 30.6 39 0.0013 23.7 3.1 40 42-81 7-46 (95)
340 2k9s_A Arabinose operon regula 30.6 24 0.00084 24.9 2.0 26 55-80 20-45 (107)
341 2h8r_A Hepatocyte nuclear fact 30.6 14 0.00047 30.7 0.7 31 47-77 36-66 (221)
342 1v4r_A Transcriptional repress 30.5 6.1 0.00021 28.1 -1.3 22 57-78 37-58 (102)
343 1al3_A Cys regulon transcripti 30.5 11 0.00036 32.5 0.0 39 47-85 8-46 (324)
344 3lsg_A Two-component response 30.2 35 0.0012 23.8 2.8 26 55-80 19-44 (103)
345 1p4x_A Staphylococcal accessor 30.2 32 0.0011 28.9 3.0 45 38-82 155-201 (250)
346 1bia_A BIRA bifunctional prote 30.1 24 0.00082 30.9 2.2 35 48-82 10-46 (321)
347 3bqz_B HTH-type transcriptiona 30.0 9.3 0.00032 29.7 -0.5 35 55-89 22-56 (194)
348 3dew_A Transcriptional regulat 29.4 9.6 0.00033 29.8 -0.5 35 55-89 28-62 (206)
349 2fjr_A Repressor protein CI; g 28.9 28 0.00095 27.4 2.3 22 57-78 22-43 (189)
350 1bja_A Transcription regulator 28.9 30 0.001 24.5 2.2 35 45-80 21-56 (95)
351 2fq4_A Transcriptional regulat 28.4 9.8 0.00034 29.8 -0.6 32 55-86 32-63 (192)
352 1hsj_A Fusion protein consisti 27.8 28 0.00096 32.0 2.4 45 37-81 400-446 (487)
353 3fym_A Putative uncharacterize 27.8 16 0.00054 27.3 0.6 27 51-77 12-38 (130)
354 1y6u_A XIS, excisionase from t 27.8 14 0.00049 24.5 0.3 22 57-78 18-39 (70)
355 3qkx_A Uncharacterized HTH-typ 27.6 9.4 0.00032 29.4 -0.8 33 55-87 28-60 (188)
356 1eto_A FIS, factor for inversi 27.5 33 0.0011 24.3 2.2 26 53-78 69-94 (98)
357 3frq_A Repressor protein MPHR( 27.5 23 0.00077 27.6 1.5 42 47-88 16-61 (195)
358 1z05_A Transcriptional regulat 27.4 32 0.0011 31.3 2.7 30 53-82 51-80 (429)
359 2zcm_A Biofilm operon icaabcd 27.3 24 0.00081 27.4 1.6 43 45-87 13-59 (192)
360 3u1d_A Uncharacterized protein 27.3 38 0.0013 26.2 2.7 41 42-82 29-73 (151)
361 3fzv_A Probable transcriptiona 27.2 17 0.00059 30.5 0.8 39 47-85 10-48 (306)
362 2fe3_A Peroxide operon regulat 27.1 42 0.0014 25.4 3.0 26 56-81 38-68 (145)
363 3lwj_A Putative TETR-family tr 27.0 9.5 0.00033 29.9 -0.9 36 55-90 32-67 (202)
364 1bl0_A Protein (multiple antib 27.0 30 0.001 25.5 2.0 27 54-80 26-52 (129)
365 3oio_A Transcriptional regulat 26.9 20 0.00068 25.7 1.0 24 56-79 24-47 (113)
366 1g2h_A Transcriptional regulat 26.7 39 0.0013 21.4 2.3 23 56-78 34-56 (61)
367 1z6r_A MLC protein; transcript 26.7 33 0.0011 30.9 2.6 29 54-82 29-57 (406)
368 3vpr_A Transcriptional regulat 26.6 15 0.0005 28.7 0.2 29 55-83 23-51 (190)
369 3gzi_A Transcriptional regulat 26.5 12 0.0004 29.8 -0.4 35 56-90 38-72 (218)
370 2d6y_A Putative TETR family re 26.5 13 0.00044 29.5 -0.2 33 55-87 28-60 (202)
371 3egq_A TETR family transcripti 26.2 8.9 0.0003 29.3 -1.2 32 56-87 25-56 (170)
372 1y9q_A Transcriptional regulat 26.2 21 0.00072 28.3 1.1 26 52-77 21-46 (192)
373 3ppb_A Putative TETR family tr 26.1 10 0.00035 29.4 -0.9 42 47-88 17-62 (195)
374 2v57_A TETR family transcripti 26.0 10 0.00035 29.5 -0.9 34 54-87 31-64 (190)
375 3f8m_A GNTR-family protein tra 26.0 43 0.0015 28.0 3.1 25 57-81 38-62 (248)
376 3lhq_A Acrab operon repressor 25.9 10 0.00035 30.0 -0.9 36 55-90 34-69 (220)
377 1xmk_A Double-stranded RNA-spe 25.6 28 0.00096 23.7 1.5 39 41-80 12-51 (79)
378 2qtq_A Transcriptional regulat 25.4 14 0.00049 29.0 -0.1 47 41-87 17-68 (213)
379 2jj7_A Hemolysin II regulatory 25.3 11 0.00037 29.2 -0.8 36 55-90 27-62 (186)
380 3on4_A Transcriptional regulat 25.3 9.5 0.00033 29.5 -1.2 34 55-88 30-63 (191)
381 4aci_A HTH-type transcriptiona 24.9 10 0.00035 29.5 -1.1 34 55-88 34-67 (191)
382 2g7s_A Transcriptional regulat 24.8 9.9 0.00034 29.4 -1.2 35 55-89 28-62 (194)
383 2dg7_A Putative transcriptiona 24.8 27 0.00092 27.1 1.5 40 46-85 14-57 (195)
384 3c2b_A Transcriptional regulat 24.8 14 0.00047 29.5 -0.3 33 55-87 35-67 (221)
385 2yve_A Transcriptional regulat 24.5 11 0.00039 29.4 -0.9 34 55-88 24-57 (185)
386 1pb6_A Hypothetical transcript 24.2 13 0.00044 29.4 -0.6 33 55-87 38-70 (212)
387 3f1b_A TETR-like transcription 24.1 12 0.00041 29.2 -0.8 35 55-89 34-68 (203)
388 3vp5_A Transcriptional regulat 23.9 12 0.0004 29.4 -0.9 33 55-87 32-64 (189)
389 3knw_A Putative transcriptiona 23.8 12 0.00041 29.6 -0.9 33 55-87 34-66 (212)
390 2eh3_A Transcriptional regulat 23.7 12 0.00041 28.9 -0.9 33 55-87 22-54 (179)
391 3rkx_A Biotin-[acetyl-COA-carb 23.6 50 0.0017 29.0 3.1 29 55-83 19-47 (323)
392 3kz9_A SMCR; transcriptional r 23.6 12 0.0004 29.3 -1.0 33 56-88 38-70 (206)
393 2hoe_A N-acetylglucosamine kin 23.6 35 0.0012 30.5 2.1 30 53-82 31-60 (380)
394 2hku_A A putative transcriptio 23.4 16 0.00056 29.0 -0.1 34 54-87 38-71 (215)
395 3c19_A Uncharacterized protein 23.4 48 0.0016 26.6 2.6 28 114-152 38-65 (186)
396 2h9b_A HTH-type transcriptiona 23.1 17 0.0006 30.9 0.0 37 49-85 9-45 (312)
397 2zb9_A Putative transcriptiona 23.1 11 0.00039 29.9 -1.2 33 55-87 43-75 (214)
398 3cwr_A Transcriptional regulat 22.9 12 0.0004 29.4 -1.1 42 47-88 25-70 (208)
399 1hw1_A FADR, fatty acid metabo 22.9 24 0.00082 29.1 0.8 22 59-80 35-56 (239)
400 3s5r_A Transcriptional regulat 22.7 16 0.00054 28.9 -0.3 34 55-88 30-63 (216)
401 3dpj_A Transcription regulator 22.7 13 0.00044 28.9 -0.9 33 55-87 28-60 (194)
402 3dcf_A Transcriptional regulat 22.4 13 0.00045 29.4 -0.9 48 42-89 33-85 (218)
403 2bnm_A Epoxidase; oxidoreducta 22.4 23 0.00077 28.2 0.5 27 52-78 20-46 (198)
404 3iwf_A Transcription regulator 22.3 23 0.00078 25.6 0.5 25 55-79 35-59 (107)
405 2dg8_A Putative TETR-family tr 22.2 11 0.00036 29.6 -1.5 35 55-89 29-63 (193)
406 2qwt_A Transcriptional regulat 22.2 14 0.00048 29.0 -0.7 33 55-87 32-64 (196)
407 3bru_A Regulatory protein, TET 22.1 14 0.00046 29.5 -0.9 46 42-87 32-82 (222)
408 3edp_A LIN2111 protein; APC883 21.9 28 0.00095 28.9 1.0 24 59-82 37-60 (236)
409 3mz1_A Putative transcriptiona 21.5 20 0.00067 29.8 0.0 34 52-85 9-42 (300)
410 1c9b_A General transcription f 21.4 1.3E+02 0.0043 24.0 5.0 53 39-91 139-195 (207)
411 4g6q_A Putative uncharacterize 21.4 45 0.0015 26.4 2.1 40 42-82 23-64 (182)
412 2guh_A Putative TETR-family tr 21.3 19 0.00065 28.9 -0.1 46 45-90 45-94 (214)
413 3vib_A MTRR; helix-turn-helix 21.2 14 0.00049 29.2 -0.9 32 55-86 30-61 (210)
414 3mkl_A HTH-type transcriptiona 21.2 34 0.0012 24.8 1.3 26 54-79 22-47 (120)
415 2hxi_A Putative transcriptiona 21.0 43 0.0015 27.6 2.0 50 37-86 27-80 (241)
416 2wui_A MEXZ, transcriptional r 21.0 15 0.00052 29.2 -0.8 32 55-86 31-62 (210)
417 2o7t_A Transcriptional regulat 20.9 13 0.00045 29.2 -1.2 33 56-88 29-61 (199)
418 2ibd_A Possible transcriptiona 20.9 15 0.00052 28.9 -0.8 33 55-87 34-66 (204)
419 2wv0_A YVOA, HTH-type transcri 20.9 28 0.00095 29.1 0.8 24 58-81 37-60 (243)
420 2id3_A Putative transcriptiona 20.8 17 0.00059 29.3 -0.5 43 45-87 46-92 (225)
421 2h98_A HTH-type transcriptiona 20.8 21 0.00071 30.6 0.0 36 50-85 10-45 (313)
422 2o03_A Probable zinc uptake re 20.8 26 0.0009 26.1 0.6 17 145-161 81-97 (131)
423 3bwg_A Uncharacterized HTH-typ 20.7 30 0.001 28.7 1.0 23 59-81 33-55 (239)
424 3f0c_A TETR-molecule A, transc 20.7 15 0.00051 29.1 -0.9 34 55-88 31-64 (216)
425 1b9m_A Protein (mode); DNA-bin 20.6 39 0.0013 28.2 1.7 41 44-85 24-64 (265)
426 2i10_A Putative TETR transcrip 20.6 22 0.00076 28.0 0.1 34 54-87 30-63 (202)
427 3bni_A Putative TETR-family tr 20.5 15 0.00052 29.7 -0.9 44 45-88 49-96 (229)
428 2rek_A Putative TETR-family tr 20.5 13 0.00045 29.1 -1.3 34 55-88 35-68 (199)
429 3rh2_A Hypothetical TETR-like 20.4 14 0.00047 29.4 -1.2 33 55-87 23-55 (212)
430 3bhq_A Transcriptional regulat 20.3 20 0.00069 28.4 -0.2 33 55-87 32-64 (211)
431 3qbm_A TETR transcriptional re 20.3 10 0.00036 29.5 -1.9 33 55-87 27-59 (199)
432 3kkc_A TETR family transcripti 20.2 7 0.00024 30.0 -3.0 32 56-87 33-64 (177)
433 1uth_A LYSR-type regulatory pr 20.2 22 0.00074 30.3 0.0 38 48-85 21-58 (315)
434 3t8r_A Staphylococcus aureus C 20.1 60 0.002 24.5 2.5 44 39-82 6-55 (143)
435 3o60_A LIN0861 protein; PSI, M 20.0 13 0.00044 29.4 -1.4 46 42-87 21-72 (185)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.57 E-value=0.0017 Score=40.48 Aligned_cols=43 Identities=9% Similarity=-0.067 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
|+..++.+++..+.+. +..|.+..++|..+|||.+||.+++++
T Consensus 2 R~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 2 RGSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CSCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 4556788777655554 468899999999999999999998864
No 2
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=96.25 E-value=0.0039 Score=40.86 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCc----ccccCCcccccHHHHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQFYATGNF----QIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~L~~g~~----~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
++...|++.++.+ +.++..|.+ ...+|..||||.+|+.+|+...-..
T Consensus 2 ~r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 2 SRRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp CCCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred CCCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4567889999988 778888888 8999999999999999998765443
No 3
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.89 E-value=0.0074 Score=44.23 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=49.7
Q ss_pred cccCHHHHHHhhHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 10 LRFSKDVVLNIIFPLARNVLETNTMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 10 frmsr~~f~~~L~~~l~~~~~~~~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
=|||.+.|. .+...++ ++ +..+-++=.||-.|.++.++|..+|+|+++|++.+.+.-+...
T Consensus 3 ~rmT~~eFe-~~~~~l~------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 3 KRLTESQFQ-EAIQGLE------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCCHHHHH-HHHTTCC------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHH-HHHccCC------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 379999999 7775551 21 3446677788999999999999999999999999999887764
No 4
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.35 E-value=0.005 Score=38.60 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
...++.++. ..++..+..|.+..++|..+|||.+|+++++.+
T Consensus 3 p~~~~~~~~-~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 3 PRAINKHEQ-EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCSSCTTHH-HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCCHHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344555443 333444678899999999999999999998653
No 5
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.26 E-value=0.0065 Score=44.48 Aligned_cols=45 Identities=20% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHH-----hhcC-CcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQF-----YATG-NFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 39 ~s~~~~l~~~L~~-----L~~g-~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
+++.++-.+.++| |..| .+++++|+..|||.+||+|+ ++.+.-+.
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 6788887666665 3466 99999999999999999999 66555444
No 6
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.91 E-value=0.017 Score=41.84 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHhhc-CCcccccCCcccccHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYAT-GNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~-g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
...|++.++.+.-.++.. |.+...+|..||||.+|+++|+.+.-
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 457888888888778777 89999999999999999999987653
No 7
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=94.41 E-value=0.033 Score=39.47 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHh-h--cCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFY-A--TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L-~--~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.+|+.++-.+.|+|+ . .|.++.++|..+|+|.+||..+..+....|-.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 478899988888884 4 78999999999999999999999988877754
No 8
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=94.33 E-value=0.039 Score=37.56 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHh-h--cCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFY-A--TGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L-~--~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..+|+.++-.+.|.|+ . .|.++.++|..+|+|.+||..+..+....|-
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3588999988888884 3 7899999999999999999999999988887
No 9
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=94.17 E-value=0.024 Score=38.03 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHH-h--hcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQF-Y--ATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 38 ~~s~~~~l~~~L~~-L--~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.+|+.++-.+.|+| + ..|.++.++|..+|+|.+||..+..+....|-.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57889998888887 3 578999999999999999999999988776654
No 10
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.11 E-value=0.042 Score=36.70 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.+|+.++-++.|.| ..|.++.++|..+|+|.+||.+..++....|-.
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788887766655 568999999999999999999999999888775
No 11
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=94.03 E-value=0.046 Score=39.05 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+|..++-++.|+| -.|.++.++|..+|||.+||...+.+....|-..+
T Consensus 37 ~L~~~~r~vl~l~~-~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSY-YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 37778887777665 47889999999999999999999999988887643
No 12
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=93.87 E-value=0.041 Score=38.99 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...+.+.+..+.-.+ ..|.+...+|..||||.+|+++|+.+.-..
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 467888776555444 678899999999999999999998876543
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=93.48 E-value=0.061 Score=39.20 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHh---hcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFY---ATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L---~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.+|+.++-.+.|+|+ ..+.++.++|..+|+|.+||.....+....|-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488999999999886 368999999999999999999999998888775
No 14
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.09 E-value=0.044 Score=42.07 Aligned_cols=44 Identities=9% Similarity=-0.088 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
+...++.+++..+...+ ..|.+...+|..+|+|.+||.+++.+.
T Consensus 3 r~~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 3 RGSALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CSCCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CcccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 44667888877665544 789999999999999999999998764
No 15
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=93.03 E-value=0.078 Score=38.32 Aligned_cols=45 Identities=9% Similarity=-0.111 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
...++.+.++.+++..+..+.+..+++.+|+||.+++.+|...+.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~ 74 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVA 74 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445899999999999999999999999999999999998887663
No 16
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=92.80 E-value=0.076 Score=38.30 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCcccccCCcc-cccHHHHHHHHHHHHHHHHH
Q psy672 33 TMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSH-GVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 33 ~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~f-gis~stv~~~~~~v~~~l~~ 85 (314)
..|...+...-|++|.|.+--++.++..+|+.| |.+.|||...++++-..+.+
T Consensus 24 ~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 24 KRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 345567888899999999999999999999999 89999999999999887753
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.65 E-value=0.11 Score=35.09 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..+++.++-++.+ +..|.+..++|+.+|+|.+||..++.+....|.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4578888876666 378899999999999999999999998887665
No 18
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=91.98 E-value=0.2 Score=36.44 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=44.9
Q ss_pred hhHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 20 IIFPLARNVLETNTMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 20 ~L~~~l~~~~~~~~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
.+++.|.+. ......+++.++-++.| +..|.+..++|+.+|||.+||..++.++...|.
T Consensus 20 ~~l~~l~~~----~~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 20 KLLEKISAG----GYGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHCC----CCSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccC----CcccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 455555432 22345688888866655 468999999999999999999999998887765
No 19
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=91.91 E-value=0.073 Score=33.80 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 41 ~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
++..-.+.. ++..|.+..++|..+|||++||++++.
T Consensus 18 ~~~~~~i~~-l~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHE-LAKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHH-HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 444333333 357889999999999999999999875
No 20
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.90 E-value=0.13 Score=36.91 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
..++..++-++.|+ ..|.++.++|..+|+|.+||..++.+....|-.
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 35888888777774 899999999999999999999999998887764
No 21
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=91.87 E-value=0.1 Score=33.83 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=30.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
+..|.+..++|+.+|+|.+||..++.+...-|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 688999999999999999999999998877665
No 22
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=91.81 E-value=0.13 Score=40.00 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..++.+.+..+...+ ..|.+...+|..||||.+||++|+++...
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468888888777666 57899999999999999999999988754
No 23
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=91.75 E-value=0.13 Score=38.36 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..++.+.+..+...+ ..|.+...+|..||||.+||++|+.+...
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 357888887766554 58899999999999999999999987653
No 24
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=91.71 E-value=0.069 Score=39.27 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC-------CcccccCCcccccHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATG-------NFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g-------~~~~~l~~~fgis~stv~~~~~~v 79 (314)
+...|++.++.++..++..+ .+...+|..||||.+|+++|+.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 34688999988888787765 788999999999999999998864
No 25
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.62 E-value=0.099 Score=36.46 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..++..++-++.| +..|.++.++|+.+|+|.+||..++.+....|.
T Consensus 20 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3578888877777 378999999999999999999999998877665
No 26
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=90.83 E-value=0.17 Score=38.40 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccc-ccCCcccccHHHHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQI-FTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~-~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
+..++.+.++-+.-.+..+|.+.. ++|..||||.+|++++++.-.....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 456899999888777767776665 8999999999999999987665443
No 27
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=90.64 E-value=0.14 Score=36.30 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
.+++.++-++.| +..|.++.++|..+|+|.+||..++.+....|-
T Consensus 29 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 477788777766 378999999999999999999999998876664
No 28
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=90.45 E-value=0.46 Score=37.89 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
+|+.++-++.|.++ .|.++.++|..+|+|.+||...+++....|-+
T Consensus 136 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 66677766666554 67899999999999999999999998887765
No 29
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=90.31 E-value=0.23 Score=40.04 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
+|+.++-++.|.++ .|.++.++|..+|+|.+||...+.+....|-+.+..+
T Consensus 141 L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 141 LPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp SCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777767665 6789999999999999999999999999888755443
No 30
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=90.25 E-value=0.21 Score=36.50 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 33 TMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 33 ~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
..|...+...-|++|.|.+=-++.++..+|..||...|||...++++-+.+.+
T Consensus 28 ~~R~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 28 PGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 34555677888999999988899999999999999999999999999987764
No 31
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=89.85 E-value=0.16 Score=34.69 Aligned_cols=44 Identities=11% Similarity=-0.042 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
+++.++-++.| + ..|.++.++|..+|+|.+||..++.+...-|-
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 45666666666 3 78999999999999999999999988877665
No 32
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=89.67 E-value=0.24 Score=35.21 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
...++..++-.+.| +..|.+..++|+.+|||.+||..++.++..-|.
T Consensus 27 ~~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45688887766555 449999999999999999999999999876654
No 33
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=89.59 E-value=0.29 Score=40.75 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
..+|+.++-++.|+|+ .|.++.++|..+|||.+||....++....|-..+
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3588899988888775 6889999999999999999999999988887643
No 34
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=89.40 E-value=0.26 Score=36.74 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHh
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQA 86 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 86 (314)
+|+.++-++.|+| ..|.++.++|..+|+|.+||...+++....|-..
T Consensus 23 L~~~~r~vl~l~y-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 6677776555544 5788999999999999999999999999888764
No 35
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=87.76 E-value=0.38 Score=35.72 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+|+.++-++.|+ +..|.++.++|..+|+|.+||...+++....|-...
T Consensus 26 L~~~~r~vl~l~-~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELF-YLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHH-HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 667777665554 467889999999999999999999999998887643
No 36
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=87.74 E-value=0.84 Score=34.60 Aligned_cols=70 Identities=6% Similarity=-0.059 Sum_probs=45.4
Q ss_pred cccccCHHHHHHhhHHhhhhhh-cccCCCCCCCCHHHHHHHHHHHhhcCCcccccCCccc--ccHHHHHHHHHH
Q psy672 8 EALRFSKDVVLNIIFPLARNVL-ETNTMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHG--VSQPTMCRLVKE 78 (314)
Q Consensus 8 ~~frmsr~~f~~~L~~~l~~~~-~~~~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fg--is~stv~~~~~~ 78 (314)
+.|.+++.++. ..+......- ....++...++.++...+.-.......+...++..+| +|.+||++++++
T Consensus 30 ~~lgis~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 30 RKISRSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHTCCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHCcCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 56788999998 7666554321 1123444567766654333222233467788888888 899999999876
No 37
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=87.24 E-value=0.41 Score=37.17 Aligned_cols=48 Identities=4% Similarity=-0.022 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+|+.++-++. ++-.|.++.++|..+|+|.+||...+.+....|-..+
T Consensus 109 ~L~~~~r~v~~--~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT--YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH--HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 36677776665 3558999999999999999999999999988887644
No 38
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.22 E-value=0.84 Score=34.37 Aligned_cols=45 Identities=16% Similarity=-0.008 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 576655443333333447889999999999999999988776543
No 39
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=87.22 E-value=0.27 Score=38.73 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
...++.+.+..+...+ ..|.+...+|..||||.+||++|+++
T Consensus 23 ~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3467888887766555 68899999999999999999998764
No 40
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=83.69 E-value=1.1 Score=34.16 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+-.++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 576665544333333346788899999999999999988876654
No 41
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.51 E-value=0.7 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.++++-.|.--....+..++|+.+|+|++||++.+.....
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455555533123467789999999999999998877654
No 42
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.28 E-value=0.83 Score=32.74 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=24.7
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+.+..++++.+|+|++|++++++....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678899999999999999998887654
No 43
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.10 E-value=0.83 Score=31.33 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhc--CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYAT--GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~--g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+.+++.+|.-.+. +.+..++|..+|+|++||.+.+.+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556655655553 467889999999999999988877654
No 44
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=81.71 E-value=0.78 Score=32.58 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=28.2
Q ss_pred HHHHHHHhhcC---CcccccCCcccccHHHHHHHHHHHHH
Q psy672 45 LLAVIQFYATG---NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 45 l~~~L~~L~~g---~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
++..|..-..+ .+..++++.+|++++|+++++++...
T Consensus 17 iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 17 ILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444444445 78899999999999999999887765
No 45
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.69 E-value=0.44 Score=33.21 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 40 s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+..++++..|. .+|.+..+||..+|+|+++|.+.+.....
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666665555 56688899999999999999988776644
No 46
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=81.46 E-value=0.58 Score=34.25 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHhhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 49 IQFYATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 49 L~~L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
...|..|.+|+++++..|+|.+|++|+-+..
T Consensus 52 a~lL~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 52 AKMLTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 3348899999999999999999999865543
No 47
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=81.21 E-value=1 Score=34.24 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++.+-.++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4566666544433333457889999999999999999988877653
No 48
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=81.08 E-value=0.99 Score=32.75 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+....++.++.....++.+..+.+..|+||.+++.+|...+..
T Consensus 34 Wva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 34 WVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999988877643
No 49
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=80.98 E-value=0.35 Score=37.57 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHH--hhcCCcccccCC----cc--cccHHHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQF--YATGNFQIFTGD----SH--GVSQPTMCRLVKEVSK 81 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~--L~~g~~~~~l~~----~f--gis~stv~~~~~~v~~ 81 (314)
.+..++.++++.+..++ -..+.+..++|. .| |||+|||+++++.=-.
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 45679999999999888 334567788999 89 9999999999987443
No 50
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=80.97 E-value=1 Score=36.85 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
.|..+.=.-+.+++..|.++.++|..+|||+++|++++...
T Consensus 8 ~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 8 HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 34444444444457899999999999999999999987653
No 51
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=80.90 E-value=0.32 Score=40.55 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
.+|+.++-++.|+++ .|.++.++|..+|||.+||....++....|
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 578888888887765 678999999999999999999888766543
No 52
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=80.58 E-value=2.1 Score=31.55 Aligned_cols=62 Identities=6% Similarity=0.084 Sum_probs=41.6
Q ss_pred cccccCHHHHHHhhHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 8 EALRFSKDVVLNIIFPLARNVLETNTMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 8 ~~frmsr~~f~~~L~~~l~~~~~~~~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
....|+...+. .+...++.-.. +...+++..|. ..+.+..++++.+|+|++|+++.++....
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~l~~---------~~~~~il~~L~--~~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 10 PSAPLDSQAAA-QVASTLQALAT---------PSRLMILTQLR--NGPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCSCCHHHHHH-HHHHHHHHHCC---------HHHHHHHHHHH--HCCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cccccCHHHHH-HHHHHHHHhCC---------HHHHHHHHHHH--HCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556666666 66666653321 12333333333 24788999999999999999999998877
No 53
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=79.51 E-value=0.99 Score=33.70 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 46 LAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 46 ~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.-++..|..|.+|+++++..|+|..||+|+-+.
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445666899999999999999999999986553
No 54
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=79.41 E-value=1.3 Score=30.73 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhc--CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYAT--GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~--g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+++++-.|.-.+- ..+..++|..+|+|++||.+.+.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556555554442 467789999999999998887766543
No 55
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=79.23 E-value=1.2 Score=34.32 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=33.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccc-cHHHHHHHHHH
Q psy672 33 TMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGV-SQPTMCRLVKE 78 (314)
Q Consensus 33 ~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgi-s~stv~~~~~~ 78 (314)
.+|...++.+ ..--.+.+++.|.+...++..+|| |++|+++|.++
T Consensus 7 ~GRPtk~t~e-~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 7 AGRPSDYMPE-VADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp ---CCSCCTT-HHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCHH-HHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3455556543 334466778999999999999999 99999999986
No 56
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=79.23 E-value=1.6 Score=34.28 Aligned_cols=54 Identities=9% Similarity=0.032 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhhc--------CCcccccCCcccccHHHHHHHHH---HHHHHHHHhccccc
Q psy672 38 KQPPMTRLLAVIQFYAT--------GNFQIFTGDSHGVSQPTMCRLVK---EVSKALAQAHVNYV 91 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~--------g~~~~~l~~~fgis~stv~~~~~---~v~~~l~~~~~~~i 91 (314)
.++.+.+..+.+.-... |.+..++|+..|||++|+++|.+ .+...+.++...++
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~l 87 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 87 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 36677777766543222 67889999999999999999988 33344444444443
No 57
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=78.63 E-value=0.79 Score=34.42 Aligned_cols=41 Identities=12% Similarity=-0.052 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcC-CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATG-NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~g-~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+.+++..|..-... .+..++++.+|+|++||++.+.+....
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34455555433333 688999999999999999999887764
No 58
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.59 E-value=1.3 Score=30.33 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=21.2
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+.+++|+.||+|.+||.+.+....+
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456688999999999998887765443
No 59
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=78.26 E-value=0.85 Score=35.64 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+|+.++-++.|.+ -.|.++.++|..+|||.+||...+.+....|-+..
T Consensus 93 ~Lp~~~r~vl~L~~-~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTTTS-SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 57888887766654 45789999999999999999999999998888643
No 60
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=77.98 E-value=1.4 Score=29.53 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHhhcC-CcccccCCcccccHHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYATG-NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 40 s~~~~l~~~L~~L~~g-~~~~~l~~~fgis~stv~~~~~~ 78 (314)
=.+++|..++.-..+| .+...+|..|||..+|+..-++.
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 3588899999999999 79999999999999999866654
No 61
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=77.78 E-value=1.4 Score=35.83 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CcccccCCcccccHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATG--NFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g--~~~~~l~~~fgis~stv~~~~~~v 79 (314)
..++|..++=.-.+..|.+| .++..+|+.+|||++.|+|+++-.
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 45789999999999999888 899999999999999999998744
No 62
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=77.45 E-value=0.94 Score=32.16 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.2
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
....+..++++.+|+|++|+++.++...+.
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 556788999999999999999988876553
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.85 E-value=0.87 Score=34.71 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=24.5
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+.+..++++.+|++++||++.+++...
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 45678999999999999999988877654
No 64
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=76.37 E-value=2 Score=30.43 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHhhc--CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQFYAT--GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~L~~--g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
....+++.+.+.+.+.+-+. |.+.++|+...+++++|+.+++++...
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34457777766655555533 789999999999999999988877643
No 65
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=76.28 E-value=2.2 Score=30.33 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 44 RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 44 ~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+++..|. -..+.+..++++.+|++++||++.+++....
T Consensus 24 ~il~~l~-~~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 24 RIYSLLL-ERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HHHHHHH-HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3444442 2456788999999999999999998887654
No 66
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.27 E-value=0.54 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=18.2
Q ss_pred cccccCCcccccHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~ 77 (314)
+..++|+..|||.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 456889999999999999876
No 67
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=76.11 E-value=1.8 Score=40.09 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHH-hh--cCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQF-YA--TGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 38 ~~s~~~~l~~~L~~-L~--~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
.++..++-.+.|+| |. .+.++..+|..+|||.++|..+..+....|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888888888 43 6789999999999999999999999888776
No 68
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=75.93 E-value=1.4 Score=33.40 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhh---cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYA---TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~---~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++.+|+.+. .+.+..++|+.+|++++||++.+++....
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 445556666653 34688999999999999999988876553
No 69
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=75.91 E-value=2.1 Score=30.35 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=24.3
Q ss_pred cCCccccc----CCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFT----GDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l----~~~fgis~stv~~~~~~v~~~ 82 (314)
.+.+..++ ++.++++++|+++.+++....
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 45677888 999999999999998887763
No 70
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.57 E-value=1.7 Score=36.98 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
..+|+.++-++.|. ..|.++.++|+..|+|.+||....++....|-.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46899999888885 499999999999999999999999988877653
No 71
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=75.44 E-value=2.1 Score=39.44 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHH-hh--cCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQF-YA--TGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 38 ~~s~~~~l~~~L~~-L~--~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
.+|+.++-.+.|+| |. .+.++..+|..+|||..+|..+..+....|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37788888888888 44 5689999999999999999999999888886
No 72
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=75.12 E-value=1.1 Score=34.20 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=30.4
Q ss_pred CCH-HHHHHHHHHHh-hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPP-MTRLLAVIQFY-ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~-~~~l~~~L~~L-~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+++ +.+++..| ++ ..+.+..++++.+|++++|+++.+++...
T Consensus 24 l~~~~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 24 LNKSVGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CCHHHHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 443 44455555 54 45678899999999999999988776543
No 73
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=74.88 E-value=1.4 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|..+..|..+..+|...|||++|++.+++
T Consensus 22 ~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 22 VRNALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHc
Confidence 444444454599999999999999999997765
No 74
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=74.86 E-value=1.1 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred hcCCcccccCCcccccHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLV 76 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~ 76 (314)
....++..+|+.+|||+++|++++
T Consensus 11 ~~~~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 11 VEDKNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp HTTSCHHHHHHHSSSCHHHHHHHH
T ss_pred HHHcCHHHHHHHhCCCHHHHHHHH
Confidence 333499999999999999999986
No 75
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.86 E-value=2.3 Score=32.17 Aligned_cols=45 Identities=9% Similarity=-0.010 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+-.++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346666654444444445689999999999999999988877654
No 76
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=74.42 E-value=1.1 Score=29.14 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred HhhcCCcccccCCcccccHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLV 76 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~ 76 (314)
....| ++..+|+.+|+|++++++++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 34556 89999999999999999987
No 77
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=73.84 E-value=1.8 Score=33.54 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCHHH-HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMT-RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~-~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+ .++..|.....+.+..++|+.+|++++|+++.+++...
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 365554 34444444445567789999999999999988876644
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=73.76 E-value=2.3 Score=32.11 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+ ..+.+..++++.+|++++|+++.+++...
T Consensus 34 ~l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 34 NLSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TCCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 46655543333333 66788999999999999999988776654
No 79
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=73.63 E-value=2 Score=34.83 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhc-------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT-------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~-------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++++++..|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36789999999988875 4577889999999999999999887653
No 80
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=73.60 E-value=2.8 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
...+++.++-++.| +..|.+..++|...|||.+||..++.+...-|.
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34688888866555 579999999999999999999999998887765
No 81
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=72.96 E-value=3 Score=31.68 Aligned_cols=45 Identities=9% Similarity=-0.093 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 456665543333333345679999999999999999988777654
No 82
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=72.76 E-value=1.9 Score=32.75 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHh---hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 43 TRLLAVIQFY---ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 43 ~~l~~~L~~L---~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+..+..|+.+ ..+.+..++|+.+|+|++||++.+++...
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344444443 35678899999999999999998887654
No 83
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=72.71 E-value=2.6 Score=35.25 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..+++.++-++.| ++.|.+..++|+..|||.+||..++.+...-|.
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588888876555 679999999999999999999999998887665
No 84
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.66 E-value=2.6 Score=31.80 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
...+++.+-.++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 32 ~~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 32 SYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp TSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3457666654444333346788999999999999999988877654
No 85
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.64 E-value=2.5 Score=31.65 Aligned_cols=44 Identities=7% Similarity=-0.006 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 35555543333333345678999999999999999988877654
No 86
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.47 E-value=2.8 Score=31.30 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555443333333345678899999999999999988776554
No 87
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=72.31 E-value=4.9 Score=30.25 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+..++... ..++.+..++++.+|+|++|+++.+++...
T Consensus 34 ~~lt~~~~~iL~~l-~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 34 VALTNTQEHILMLL-SEESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SCCCHHHHHHHHHH-TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH-HhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666554433322 234488899999999999999998877654
No 88
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=72.20 E-value=3.3 Score=30.89 Aligned_cols=46 Identities=7% Similarity=-0.070 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++.+..++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 3466555443333333456788999999999999999988776543
No 89
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.18 E-value=2 Score=32.39 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCHHH-HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMT-RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~-~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+ .++..|..-..+.+..++++.+|++++|+++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 354433 34444434445678999999999999999988877654
No 90
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=72.11 E-value=2.2 Score=30.77 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=25.7
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+.+..++++.+|+|++|++++++....+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445688999999999999999999887754
No 91
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=71.70 E-value=2.9 Score=31.61 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++.+..++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 3466655433333333346788999999999999999988776654
No 92
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=71.60 E-value=2.7 Score=32.11 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
...+++.+..++...+-..+.+..++++.++++++|+++.+++...
T Consensus 42 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3457665554333333345578899999999999999988877654
No 93
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=71.33 E-value=1.6 Score=31.22 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.7
Q ss_pred hcCCcccccCCcccccHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
..+.+..++|..+|||.+||++.++.
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34578899999999999999999875
No 94
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=71.14 E-value=2.8 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+..++++.+|+|++||++.+....+.
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677899999999999999888876543
No 95
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=71.13 E-value=3.6 Score=30.76 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=30.7
Q ss_pred CCCHHHH-HHHHHHHhhc-CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYAT-GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~-g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+. ++..|+.-.. +.+..++++.+|++++|+++.+++...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 4655544 3444433322 578999999999999999988777654
No 96
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=70.84 E-value=2.5 Score=31.55 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=30.9
Q ss_pred CCCHHHH-HHHHHHHhh--cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+- ++..|+. . .+.+..++++.++++++|+++.+++...
T Consensus 34 ~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4665554 3333333 3 4578899999999999999998887655
No 97
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.73 E-value=3.3 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 36555443333333345689999999999999999988877654
No 98
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=70.50 E-value=2.8 Score=35.20 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
....+++.++-.+.| ++.|.+..++|+..|||..||..++.+...-|.
T Consensus 172 ~~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 172 SNVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp GGCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 345788888765554 689999999999999999999999998876654
No 99
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=70.17 E-value=1.7 Score=30.59 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=23.4
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+.+..++++.+|+|++|+++.++....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467789999999999999999887754
No 100
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=70.07 E-value=3.4 Score=30.95 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|+|++|+++.+++...
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35554443333323345678999999999999999988776654
No 101
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=69.57 E-value=2.4 Score=30.73 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++..| -..+.+..++++.+|+|++|+++.++.....
T Consensus 23 r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 23 RWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp HHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34454444 3455788999999999999999998877543
No 102
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=69.42 E-value=3.2 Score=30.02 Aligned_cols=28 Identities=0% Similarity=-0.075 Sum_probs=23.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+..++++.+|+|++||++.+......
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4678899999999999999888876654
No 103
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=69.02 E-value=1.8 Score=31.51 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 43 TRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 43 ~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
.+++..|. ..+.+..++++.+|+|++|+++.++...++=
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~G 66 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKSGG 66 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34444432 3446788999999999999999998887653
No 104
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=69.01 E-value=2.5 Score=32.25 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=29.7
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+- ++..|..-..+.+..++++.++++++|+++.+++...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3555443 3333332233458999999999999999998877654
No 105
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=68.90 E-value=2.8 Score=33.76 Aligned_cols=42 Identities=14% Similarity=-0.028 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+..+++.++.......+..|.+...+|..+|+|+++|++++.
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456889999888888888999999999999999999887653
No 106
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.82 E-value=3.5 Score=31.63 Aligned_cols=44 Identities=5% Similarity=-0.072 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35554443333323334678999999999999999988877655
No 107
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=68.74 E-value=2.7 Score=33.79 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++++|+.+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57899999999988642 24568899999999999999988765
No 108
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=68.31 E-value=1.9 Score=30.41 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhc---CCcccccCCcccccHHH-HHHHHHHHHHH
Q psy672 43 TRLLAVIQFYAT---GNFQIFTGDSHGVSQPT-MCRLVKEVSKA 82 (314)
Q Consensus 43 ~~l~~~L~~L~~---g~~~~~l~~~fgis~st-v~~~~~~v~~~ 82 (314)
.+.+.+|..+.. +.+..++++.+|++++| +++.+++....
T Consensus 15 ~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 15 IRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 344445555542 47889999999999999 99998877654
No 109
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=68.16 E-value=2.4 Score=34.52 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhhc--------------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYAT--------------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++++++.+|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 4789999999988763 3466789999999999999999987653
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=68.10 E-value=2.9 Score=32.81 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCCCHHHHH-HHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRL-LAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 36 ~~~~s~~~~l-~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
...+++.+-. +..|.....+.+..++++.++++++|+++.+++...
T Consensus 48 ~~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 48 PLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3456665533 333322244578899999999999999988777654
No 111
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=67.99 E-value=3.4 Score=34.48 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhh-cCCcc--cccCCcccccHHHHHHHHHHHHHH
Q psy672 41 PMTRLLAVIQFYA-TGNFQ--IFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 41 ~~~~l~~~L~~L~-~g~~~--~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+.++-+|+.|. .|.+. .++|+.+|+|++|+++.+++....
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~ 51 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERD 51 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677888888886 46677 899999999999999999887754
No 112
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.95 E-value=3.1 Score=32.13 Aligned_cols=44 Identities=16% Similarity=-0.054 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 35555443333333344578899999999999999988877654
No 113
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=67.90 E-value=2.7 Score=34.66 Aligned_cols=46 Identities=2% Similarity=-0.085 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC--------CcccccCCcccccHHHHHHHHHHHHH
Q psy672 36 GVKQPPMTRLLAVIQFYATG--------NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 36 ~~~~s~~~~l~~~L~~L~~g--------~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
....+++++|+.+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 34568999999999887532 36678999999999999999988754
No 114
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=67.89 E-value=26 Score=30.47 Aligned_cols=157 Identities=12% Similarity=-0.006 Sum_probs=80.6
Q ss_pred ccc---cCHHHHHHhhHHhhhhh---hc--ccCCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 9 ALR---FSKDVVLNIIFPLARNV---LE--TNTMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 9 ~fr---msr~~f~~~L~~~l~~~---~~--~~~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
.|. +++.++. ..+...+.. +. ...++...++. ++|.-.+ --....+.+.++..++||.+||++++++.
T Consensus 35 ~~g~~~vs~~tv~-~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L~~~- 110 (345)
T 3hot_A 35 AFGEQVPTVKTCE-RWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRLREM- 110 (345)
T ss_dssp HTCSCSCCHHHHH-HHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHHHHT-
T ss_pred HhCCCCCcHHHHH-HHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHHHHh-
Confidence 456 9999999 777765532 11 12334444544 4443322 22334566788888999999999998872
Q ss_pred HHHHHhccccccCCC---c---h--hhhHHHhh---hcCCCCCceeeeeceEEEEecCCCC--------C-CCcccCCCC
Q psy672 81 KALAQAHVNYVKFPE---Q---L--APTKVAFQ---GIGNFPGVVGCVDCTHVPIQLPSVE--------N-GENFRNRKG 140 (314)
Q Consensus 81 ~~l~~~~~~~i~~P~---~---~--~~~~~~f~---~~~~~p~~~g~iDgt~i~i~~P~~~--------~-~~~y~~~k~ 140 (314)
. +....... .|. . . ........ ....++.-+-.+|-+.+....+... . ........+
T Consensus 111 g-~~~k~~~~--~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~ 187 (345)
T 3hot_A 111 G-KIQKVGRW--VPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRF 187 (345)
T ss_dssp T-CEEEECCE--ESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTT
T ss_pred C-Ceeecccc--ccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccceeeeccCCCCCCCCcCccCc
Confidence 1 11111111 121 1 1 01111111 1124667777899998876422110 0 001111122
Q ss_pred ceeeeeeeecCCcccEEEeecCCCCCcChhhhh
Q psy672 141 TFSLNVQVIGGPNLEIWDVVSGWPGSVHDSRIF 173 (314)
Q Consensus 141 ~~s~~~q~v~d~~g~i~~~~~~~pGs~~D~~i~ 173 (314)
.-.+.+.++.+.+|.+.+......|+++ +..+
T Consensus 188 ~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~y 219 (345)
T 3hot_A 188 GKKTMLCVWWDQSGVIYYELLKPGETVN-AARY 219 (345)
T ss_dssp CCEEEEEEEEESSSEEEEEEECSSCCCC-HHHH
T ss_pred CCcEEEEEEEcccCceeeEecCCCCccc-HHHH
Confidence 3356677788888866655554223443 4433
No 115
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=67.79 E-value=3.4 Score=31.54 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+-.++...+-..+.+..++++.++++++|+++.+++...
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346655543333333346678899999999999999998877654
No 116
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=67.77 E-value=3.3 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=30.6
Q ss_pred CCCHHHH-HHHHHHHhh-cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYA-TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~-~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+- ++..|..-. .+.+..++++.+|++++|+++.+++...
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3554443 344443332 3678899999999999999998887654
No 117
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=67.72 E-value=3.6 Score=31.90 Aligned_cols=45 Identities=0% Similarity=-0.103 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+-.++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346666544433333345678899999999999999988877543
No 118
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=67.69 E-value=4.1 Score=32.45 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++++|+.+|..++.. .+..++|...|+|+.|++|.++++.+.
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467899999999987632 355678999999999999999988754
No 119
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=67.68 E-value=1.7 Score=29.36 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=19.2
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+...+|+.+|||++||++|++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 3788999999999999999763
No 120
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.58 E-value=2.6 Score=31.73 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=29.1
Q ss_pred CCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+++.+. ++..|. -..+.+..++++.+|++++|+++.+++...
T Consensus 27 lt~~~~~iL~~l~-~~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 27 LTRGQYLYLVRVC-ENPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp CTTTHHHHHHHHH-HSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 544443 333333 234578899999999999999988777554
No 121
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.57 E-value=4 Score=31.46 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=30.7
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+. ++..|.. ..+.+..++++.+|++++|+++.+++....
T Consensus 46 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 46 GMAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CCCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3555544 3333333 456788899999999999999888776543
No 122
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=67.41 E-value=0.61 Score=30.30 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=19.9
Q ss_pred cCCcccccCCcccccHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLV 76 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~ 76 (314)
.+.++..+|+.+|||++||++|.
T Consensus 9 ~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 9 HFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HcCCHHHHHHHhCCCHHHHHHHH
Confidence 34588999999999999999884
No 123
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=67.37 E-value=3.3 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.-++..|+..+.+..++++.||||++||+|.+....+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3356667778899999999999999999998887644
No 124
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.07 E-value=2 Score=32.09 Aligned_cols=44 Identities=5% Similarity=-0.051 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 46655543333323334578899999999999999988877654
No 125
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=66.94 E-value=3.7 Score=32.90 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++++|+-+|..++.. .+..++|...|+|+.|++++++++.+.
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999988632 355778999999999999999988653
No 126
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=66.87 E-value=3.6 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 37 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36555443333333334678899999999999999988776544
No 127
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=66.84 E-value=3.4 Score=31.52 Aligned_cols=43 Identities=9% Similarity=-0.059 Sum_probs=30.1
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+. ++..|+ -..+.+..++++.+|++++|+++.+++...
T Consensus 38 ~lt~~~~~iL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 38 GLTIQQLAMINVIY-STPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TCCHHHHHHHHHHH-HSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3655544 333333 234578899999999999999988776654
No 128
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.81 E-value=3.8 Score=31.11 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=26.2
Q ss_pred CCCHHHH-HHHHHHHhh-cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYA-TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~-~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+- ++..|..-. .+.+..++++.+|++++|+++.+++....
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 4655554 334443332 57889999999999999999988877653
No 129
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=66.81 E-value=3.2 Score=40.19 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHhh---cCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYA---TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~---~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.+|+.++-.+.|+|+- .|.++..+|..+|||.+||..+.++....|-.
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 5899999988888763 67899999999999999999998887665543
No 130
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.68 E-value=3.1 Score=30.70 Aligned_cols=31 Identities=3% Similarity=-0.021 Sum_probs=25.7
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
....+..++++.+|+|++|+++.++...++=
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~G 59 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDSG 59 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 4456788999999999999999988877653
No 131
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.68 E-value=3.3 Score=31.66 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++.+.+-..+.+..++++.+|++++||++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46655543333333344678899999999999999988776654
No 132
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=66.39 E-value=2.4 Score=29.52 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHHhhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 47 AVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 47 ~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
..|..|+. ..+..+|+..|++.||++|+-+.++
T Consensus 17 ~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~ 49 (83)
T 1zs4_A 17 ALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWI 49 (83)
T ss_dssp HHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTH
T ss_pred HHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHH
Confidence 34444554 4567899999999999999765553
No 133
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=66.37 E-value=3.2 Score=33.23 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..++.++++.+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357899999999887641 34567899999999999999988764
No 134
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=66.03 E-value=4.2 Score=31.79 Aligned_cols=44 Identities=14% Similarity=-0.082 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+-.++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46655543333333345688999999999999999988776544
No 135
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=65.92 E-value=3.9 Score=33.35 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++++++-+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 357899999999988642 25678899999999999999987765
No 136
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=65.81 E-value=0.69 Score=30.86 Aligned_cols=22 Identities=18% Similarity=-0.019 Sum_probs=19.1
Q ss_pred CcccccCCcccccHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+..++|+..|||.+||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999864
No 137
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=65.76 E-value=3.7 Score=34.14 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhhc--------------CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT--------------GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++++|+.+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 162 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 162 HRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 35789999999988753 235678999999999999999988765
No 138
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=65.76 E-value=4.4 Score=32.13 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..++..++-++.+..-....++.++|+.+|+|++||.+.+++..+.
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455544433332222334788999999999999999988877543
No 139
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.75 E-value=5.5 Score=30.65 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=25.0
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45788999999999999999998887654
No 140
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=65.69 E-value=1.3 Score=36.01 Aligned_cols=36 Identities=11% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 44 RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 44 ~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
++--...++..|.+...+|..+|||.+|+++++..-
T Consensus 147 ~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 147 EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 344445566789999999999999999999988653
No 141
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=64.84 E-value=5 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.9
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
...++.++|+.+|+|++|+++.+++..+
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4478899999999999999988887654
No 142
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=64.76 E-value=0.96 Score=25.98 Aligned_cols=22 Identities=0% Similarity=-0.159 Sum_probs=16.9
Q ss_pred CCCccccccccCHHHHHHhhHHh
Q psy672 2 PLWTEQEALRFSKDVVLNIIFPL 24 (314)
Q Consensus 2 ~~~~~~~~frmsr~~f~~~L~~~ 24 (314)
.+-+|++.|.|+|+.|. .|=..
T Consensus 2 sd~dF~~vFgmsr~eF~-~LP~W 23 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFA-NLPLW 23 (35)
T ss_dssp CHHHHHHHHSSCHHHHH-HSCHH
T ss_pred CHHHHHHHHCCCHHHHH-HCcHH
Confidence 44567899999999999 66443
No 143
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.58 E-value=4.9 Score=30.84 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=23.9
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
...++.++|+.+|+|++|+++.+++..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478899999999999999988877654
No 144
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=64.51 E-value=3.5 Score=30.44 Aligned_cols=30 Identities=3% Similarity=0.007 Sum_probs=24.8
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
....+..++++.+|+|++|+++.++....+
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345678899999999999999999877653
No 145
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=64.30 E-value=4.4 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=24.6
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...++.++|+.+|+|++|+++.+++....
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34688999999999999999988887654
No 146
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=64.15 E-value=3.2 Score=33.47 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhhcC-------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG-------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g-------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.++++.+|..++.. .+..++|...|+|+.|++|+++++.+.
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46789999999887532 356789999999999999999987764
No 147
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=64.09 E-value=4.2 Score=34.30 Aligned_cols=44 Identities=5% Similarity=0.110 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
++.-++.+-.|..|+. +.+..++++.+|+++||++++++.....
T Consensus 4 v~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~ 50 (249)
T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK 50 (249)
T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445566666677653 4678899999999999999999987764
No 148
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=63.99 E-value=4 Score=31.55 Aligned_cols=44 Identities=16% Similarity=-0.090 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+-.++...+-..+.+..++++.+|++++|+++.+++...
T Consensus 50 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35555443333333345778899999999999999998877654
No 149
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=63.92 E-value=5.5 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=24.9
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45788999999999999999998887654
No 150
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=63.35 E-value=5.6 Score=26.99 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=30.1
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCccc----ccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHG----VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fg----is~stv~~~~~~v~~~ 82 (314)
.+++.+. ++.+|+. ..+.+..++++.++ ++.+||++.+++..+.
T Consensus 6 ~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k 54 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK 54 (82)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC
Confidence 4555444 4444444 45678889998886 6899999888876653
No 151
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=63.18 E-value=5.9 Score=30.39 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=24.6
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45788999999999999999988877543
No 152
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=62.96 E-value=2 Score=30.36 Aligned_cols=33 Identities=6% Similarity=-0.125 Sum_probs=26.2
Q ss_pred HHhhc-CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 50 QFYAT-GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 50 ~~L~~-g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..|.. +.+..++++.+|+|++|+++.++...++
T Consensus 30 ~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 30 CMLHNQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp HHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444 4578899999999999999998887664
No 153
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=62.75 E-value=2.8 Score=31.18 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=24.8
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+.+..++++.+|+|++|+++.++....+
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44688899999999999999999887654
No 154
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=62.65 E-value=4.5 Score=32.90 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhcC-----------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG-----------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g-----------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++++++.+|..+... .+..++|...|+|+.|++|+++++.+.
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46788999888776642 356789999999999999999887764
No 155
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.62 E-value=4.2 Score=31.10 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+..++.+.+-..+.+..++++.+|++++|+++.+++...
T Consensus 40 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46555543332222234568899999999999999988877654
No 156
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=62.58 E-value=3.7 Score=29.63 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=28.9
Q ss_pred HHHHHHHHHHH--hhcCCcccccCCcccccHHHHHHHHH
Q psy672 41 PMTRLLAVIQF--YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 41 ~~~~l~~~L~~--L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..+++.-.|.. ...|.++.++|+..|||++|+++|=+
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 44556655555 45889999999999999999998754
No 157
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=62.39 E-value=3.5 Score=31.83 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=29.9
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+- ++..|. -..+.+..++++.+|++++|+++.+++...
T Consensus 47 ~lt~~q~~vL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 47 GIGSGQFPFLMRLY-REDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp TCCTTTHHHHHHHH-HSCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444443 333332 235678899999999999999988887654
No 158
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=62.21 E-value=2.5 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=21.8
Q ss_pred hcCCcccccCCcccccHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
..| ++.++|+..|||++|+++|.+.
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 356 8999999999999999998763
No 159
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=61.90 E-value=7.9 Score=31.58 Aligned_cols=45 Identities=9% Similarity=-0.033 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+-.++...+-..+.+..+|++.++++++|+++.+++...
T Consensus 44 ~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346665554433333345789999999999999999988877654
No 160
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=61.86 E-value=2 Score=27.51 Aligned_cols=26 Identities=19% Similarity=-0.066 Sum_probs=22.5
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|+|++|++++.+
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688899999999999999998865
No 161
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=61.82 E-value=7.7 Score=33.09 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..++..++-.+.| ++.|.+..++|+..|||..||..++.+...-|.
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688877766555 479999999999999999999999998877665
No 162
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=61.66 E-value=3.1 Score=31.32 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+++.+..++...+-..+.+..++++.+|++++|+++.+++....
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 55544433222222344688899999999999999888776543
No 163
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.65 E-value=4.2 Score=31.00 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+-.++... -..+.+..++++.+|++++|+++.+++...
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555554333333 566788999999999999999988877654
No 164
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=61.39 E-value=2.1 Score=28.63 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=24.3
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+-..|.++.++|+..|||++|+++|-+
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3456899999999999999999998864
No 165
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=61.35 E-value=3.2 Score=32.35 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=25.6
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
....+..+|++.+|+|++||++.++...++
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445778899999999999999999887765
No 166
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=61.28 E-value=6.6 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHH------hhcCC---cccccCCcccccHHHHHHHHHHH
Q psy672 35 QGVKQPPMTRLLAVIQF------YATGN---FQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 35 ~~~~~s~~~~l~~~L~~------L~~g~---~~~~l~~~fgis~stv~~~~~~v 79 (314)
+...+|..+|+.-.|.. |.-|. +.+.+|..||||++||.+.+...
T Consensus 9 ~~s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 9 TKSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456667776655554 33343 34578889999999988665543
No 167
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.16 E-value=4.4 Score=30.18 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=25.1
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+.+..++++.+|+|++|+++.++...++
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNL 86 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35688899999999999999999888773
No 168
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=61.03 E-value=5.7 Score=29.09 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=32.1
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCccc----ccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHG----VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fg----is~stv~~~~~~v~~~ 82 (314)
.+++.+. ++.+|+. ..+.+..++++.++ ++++||++++++....
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 4555443 4444444 56788899999998 8899999998887764
No 169
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=60.99 E-value=4.8 Score=27.35 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCC--cccccCCcccccHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGN--FQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~--~~~~l~~~fgis~stv~~~~~~v 79 (314)
+.+.+++.-++..|..|. +...+|..+|+++++|.+++...
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456777777788888665 66789999999999877665443
No 170
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=60.85 E-value=4.7 Score=28.17 Aligned_cols=29 Identities=0% Similarity=-0.095 Sum_probs=24.8
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+.+..++++.+|+|++|+++.+++....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45788899999999999999998877654
No 171
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=60.84 E-value=3.7 Score=33.44 Aligned_cols=44 Identities=14% Similarity=-0.015 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcC--------------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG--------------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g--------------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++++|+-+|..+... .+..++|...|+|+.|++|+++++.+.
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999888621 356778999999999999999988654
No 172
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=60.82 E-value=4.8 Score=30.32 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=24.0
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
++.+..++++.+|++++|+++.+++....
T Consensus 49 ~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 49 EPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 33389999999999999999988776654
No 173
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=60.69 E-value=4.6 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhc--CCcccccCCcc-----cccHHHHHHHHH
Q psy672 43 TRLLAVIQFYAT--GNFQIFTGDSH-----GVSQPTMCRLVK 77 (314)
Q Consensus 43 ~~l~~~L~~L~~--g~~~~~l~~~f-----gis~stv~~~~~ 77 (314)
++..+.+..+.. ..+..++++.+ +||.+||++.++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 444444444443 35667888888 999999999988
No 174
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=60.67 E-value=2.1 Score=28.33 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=23.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|||++|+++|.+
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45788999999999999999998876
No 175
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=60.64 E-value=2.1 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=22.3
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
...|.++.++|+..|||++|++++.+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 45688899999999999999998764
No 176
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=60.60 E-value=1.3 Score=25.81 Aligned_cols=21 Identities=0% Similarity=-0.154 Sum_probs=16.3
Q ss_pred CCCccccccccCHHHHHHhhHH
Q psy672 2 PLWTEQEALRFSKDVVLNIIFP 23 (314)
Q Consensus 2 ~~~~~~~~frmsr~~f~~~L~~ 23 (314)
.+-+|++.|.|+|+.|. .|=.
T Consensus 4 sd~dF~~vFgmsr~eF~-~LP~ 24 (37)
T 1und_A 4 SEQDFVSVFGITRGQFA-ALPG 24 (37)
T ss_dssp CHHHHHHHHSSCHHHHH-HSCH
T ss_pred CHHHHHHHHCcCHHHHH-HChH
Confidence 34567789999999999 6543
No 177
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=60.59 E-value=6.3 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.6
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...++.++|+.+|+|++|+++.+++..+.
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34788999999999999999998877654
No 178
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=60.58 E-value=4.7 Score=29.07 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=24.7
Q ss_pred hcCCcccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
....++.++++.+ |+|++|+++.+++..+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3447889999999 99999999888876653
No 179
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=60.50 E-value=5.3 Score=33.20 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhhc--------------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT--------------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++++|+.+|..++. ..+..++|...|+|+.|++|+++++.+.
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46799999999988762 2366789999999999999999988764
No 180
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=60.44 E-value=7.2 Score=26.42 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=23.1
Q ss_pred CCcccccCCcc-----cccHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSH-----GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 55 g~~~~~l~~~f-----gis~stv~~~~~~v~~~ 82 (314)
..+..++++.+ ++|.+||++.++...+.
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 46777888888 99999999998877654
No 181
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=60.35 E-value=2.9 Score=29.78 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=24.4
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...+..++++.+|+|++|+++.++....+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44688899999999999999988877654
No 182
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=60.31 E-value=2.6 Score=28.48 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 43 TRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 43 ~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+++...|. ..|.+..+||+..|||++|++++..
T Consensus 12 ~ri~~~l~--~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 12 ADVIAGLK--KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHH--TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33444443 6789999999999999999997754
No 183
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=59.88 E-value=4.4 Score=31.58 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=28.4
Q ss_pred CCCCHHHH-HHHHHHHh-hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTR-LLAVIQFY-ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~-l~~~L~~L-~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++.+- ++..|+.. ..+.+..+|++.++++++|+++.+++...
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 34665554 33334333 24788999999999999999988876644
No 184
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=59.73 E-value=5 Score=33.75 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhcC-------------CcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATG-------------NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g-------------~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++++|+.+|..++.. .+..++|...|+|+.|++|+++++.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57899999999888643 24567899999999999999988765
No 185
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=59.71 E-value=2.2 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=22.7
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|...|||++|++++.+
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345788899999999999999998764
No 186
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=58.60 E-value=3.2 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=25.2
Q ss_pred HHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 49 IQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 49 L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
-++...|.++.++|+..|||+++++++-+.
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 345668899999999999999999988654
No 187
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=58.54 E-value=6.7 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhc--------------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYAT--------------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~--------------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.++++.+|..++. ..+..++|...|+|+.|++|+++++.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 5789999999988752 2456789999999999999999987653
No 188
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.47 E-value=6.4 Score=31.46 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=30.6
Q ss_pred CCHHHHHH-HHHHHh-hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTRLL-AVIQFY-ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~l~-~~L~~L-~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+++.+-.+ ..|+.. ..+.+..++|+.+|++++|+++.+++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66555443 344333 45789999999999999999988776543
No 189
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=58.18 E-value=2.8 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++.+-. +|..|. .+.+..++++.++++++|+++.+++...
T Consensus 33 glt~~q~~--vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYI--VLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHH--HHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHH--HHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46655532 333333 4567889999999999999998887654
No 190
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=58.13 E-value=5.5 Score=30.50 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=24.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..++.++|+.+|+|++|+++.+++..+.
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3688999999999999999988877654
No 191
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=58.10 E-value=3.6 Score=28.32 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=26.0
Q ss_pred HHHHHHH--hhcCCcccccCCcccccHHHHHHHHH
Q psy672 45 LLAVIQF--YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 45 l~~~L~~--L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+.-.|.. ...|.++.++|...|||++++++|-+
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 4444444 45889999999999999999998865
No 192
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=57.98 E-value=1.7 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.4
Q ss_pred cccccCCcccccHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~ 77 (314)
++..+|+.+||++++|+++++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 889999999999999999864
No 193
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=57.85 E-value=2.5 Score=28.60 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.4
Q ss_pred hcCCcccccCCcccccHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..|.++.++|+..|||++|+++|.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4788999999999999999998865
No 194
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=57.85 E-value=5.1 Score=33.66 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 40 s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+.-++.+-.|..|+. +.+..++++.+|+++||++++++.....
T Consensus 3 ~sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~ 48 (241)
T 2xrn_A 3 QVIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE 48 (241)
T ss_dssp CHHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345566667777764 3577899999999999999999988764
No 195
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=57.81 E-value=3 Score=28.45 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|||++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44688999999999999999999876
No 196
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.66 E-value=7.5 Score=29.15 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=32.1
Q ss_pred CCCCHHHH-HHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTR-LLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~-l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..++..+- |++.|.++. .+.+...+|+.+|+|.++|.+.+++....
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34555544 445555542 22678899999999999999988877653
No 197
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=57.55 E-value=6.6 Score=32.88 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..+++.++.......+..|.+...+|..+|+|+++|.+++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45788888777766678889999999999999999998765
No 198
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=57.44 E-value=4 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
...|.++.++|...|||+++++++.+
T Consensus 22 ~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688999999999999999998876
No 199
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.07 E-value=3.3 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.6
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
...|.++.++|...|||++|++++.+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34788999999999999999998875
No 200
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=56.97 E-value=8.1 Score=31.60 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhhcC----------CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATG----------NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g----------~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...+++++|+.+|..++.. .+..++|...|+|+.|++|+++++.+.
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4578999999999998632 235679999999999999999887654
No 201
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=56.93 E-value=5.5 Score=33.08 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhh-cCCcc--cccCCcccccHHHHHHHHHHHHHH
Q psy672 41 PMTRLLAVIQFYA-TGNFQ--IFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 41 ~~~~l~~~L~~L~-~g~~~--~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+..+.+|+.+. .|.+. .++|+.+|++++|+++.+++....
T Consensus 7 ~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 51 (226)
T 2qq9_A 7 TTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD 51 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3566777888875 45555 899999999999999988887654
No 202
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=56.76 E-value=8 Score=32.66 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=26.1
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+.+..++|+.+|+++||+++.++...+.
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~ 193 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKF 193 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456888999999999999999999887764
No 203
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=56.55 E-value=8.1 Score=30.57 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++..++-++.+..-....++.++|+.+|+|++|+.+.+++..+.
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 355444433333222345789999999999999999988877554
No 204
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=56.19 E-value=3.2 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.3
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|+|++|++++.+
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 34678899999999999999998865
No 205
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.19 E-value=11 Score=28.58 Aligned_cols=29 Identities=3% Similarity=-0.159 Sum_probs=24.4
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+.+...+|..+|+|.++|.+++.+.+.-
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34688899999999999999888877663
No 206
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=55.65 E-value=3.6 Score=31.62 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=31.8
Q ss_pred CCCHHHH-HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+. ++..|..-..+.+..++++.+|++++|+++.+++....
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3555444 44444333456888999999999999999988776553
No 207
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=55.54 E-value=6.9 Score=30.05 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=24.5
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+.+.+..++++.+|+|++||++.+++....
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 355788899999999999999988876543
No 208
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=55.50 E-value=2.8 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.2
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+...|.++.++|+..|||++|++++.+
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345688999999999999999998865
No 209
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=54.99 E-value=4.6 Score=28.69 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=29.5
Q ss_pred HHHHHHHHHhh-cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 43 TRLLAVIQFYA-TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 43 ~~l~~~L~~L~-~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.+....+. .+.+..++++.+|+|++|+++.++...++
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34433323333 34678899999999999999999987777
No 210
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.62 E-value=6.5 Score=30.03 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCCHHHH-HHHHHHHhhc-CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYAT-GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~-g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.++..+- ++..|..... +.+..++++.++++++|+++.+++...
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4665554 3333433333 367889999999999999988877544
No 211
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=54.59 E-value=8 Score=26.41 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=21.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+..++++.|+||.+|+.+-+.....
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 366789999999999999887766544
No 212
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=54.32 E-value=6.4 Score=29.69 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHhhcC-CcccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 48 VIQFYATG-NFQIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 48 ~L~~L~~g-~~~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
.|..|..| .++.++++.+ |||++|+++.+++....
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 34455544 6889999999 79999999998887664
No 213
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=54.19 E-value=4.2 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=22.5
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|...|||++|++++.+
T Consensus 17 ~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999998865
No 214
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=54.10 E-value=6.5 Score=30.20 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=26.0
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
...++.++++.+|||++|+++.+++..+.=
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~G 65 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHG 65 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 447899999999999999999999887753
No 215
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=53.79 E-value=4 Score=26.66 Aligned_cols=26 Identities=15% Similarity=0.024 Sum_probs=22.3
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|+|+++++++.+
T Consensus 23 ~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34788999999999999999998865
No 216
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=53.76 E-value=7.4 Score=31.73 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=35.2
Q ss_pred CHH-HHHHHHHHHhhc-------------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 40 PPM-TRLLAVIQFYAT-------------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 40 s~~-~~l~~~L~~L~~-------------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
++. ++++-+|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 456 899999988874 2467889999999999999999987653
No 217
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=53.59 E-value=3.3 Score=27.36 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.6
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|+|++|++++.+
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998865
No 218
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=53.25 E-value=2.8 Score=33.93 Aligned_cols=39 Identities=10% Similarity=-0.057 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
+--...++..|.+...+|..+|+|.+|+++++...-..+
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~ 186 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHhh
Confidence 333444566889999999999999999999987654443
No 219
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=52.80 E-value=2.9 Score=33.97 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=0.9
Q ss_pred CCCHHHHHHHHHHHhhc-------CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT-------GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~-------g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..+++++++.+|..+.. ..+..++|...|+|+.|++|+++++.+.
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp CC--------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 35678899988887762 3567899999999999999999988753
No 220
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=52.74 E-value=3.9 Score=26.92 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=22.5
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|+..|+|+++++++.+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688999999999999999998865
No 221
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=52.60 E-value=4.2 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=22.8
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
...|.++.++|+..|||+++++++-+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 44789999999999999999998865
No 222
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=52.53 E-value=4.6 Score=28.58 Aligned_cols=27 Identities=11% Similarity=-0.219 Sum_probs=23.3
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+...|.++.++|+..|||++|+++|-+
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 445789999999999999999998854
No 223
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=52.22 E-value=4.7 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHHHH--hhcCCcccccCCcccccHHHHHHHHH
Q psy672 44 RLLAVIQF--YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 44 ~l~~~L~~--L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+.-.|.. -..|.++.++|...|||++|++++-+
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34434444 34788999999999999999998865
No 224
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=51.91 E-value=9.4 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCcccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 44 RLLAVIQFYATGNFQIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 44 ~l~~~L~~L~~g~~~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
.++..|. ..+.++.++++.+ |++++|+++.+++....
T Consensus 26 ~IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 26 SLMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp HHHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3444443 3568899999999 99999999988887664
No 225
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=51.85 E-value=3.6 Score=30.90 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=24.6
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+-..|.++.++|+.+|+|++|+++|-+
T Consensus 79 ~R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 79 VRKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3556899999999999999999999865
No 226
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=51.58 E-value=3.6 Score=28.78 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.8
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|+..|||++|++++.+
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456789999999999999999998865
No 227
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=51.56 E-value=5 Score=25.99 Aligned_cols=26 Identities=4% Similarity=-0.174 Sum_probs=22.3
Q ss_pred hhcCCcccccCCccc--ccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHG--VSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fg--is~stv~~~~~ 77 (314)
-..|.++.++|+..| +|+++++++-+
T Consensus 18 ~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 18 TQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 346888999999999 99999998875
No 228
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=51.53 E-value=8 Score=31.01 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.++..-.|..|.. +.+..++|+.||||++|+.+.+.....
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445555666652 368889999999999999999886654
No 229
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=51.24 E-value=8.1 Score=28.09 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHHhhcC-Cc--ccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 48 VIQFYATG-NF--QIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 48 ~L~~L~~g-~~--~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
.|..|..| .+ +.++++.+ |||++++++.+++..++
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 34445555 45 79999999 99999999998887765
No 230
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=51.07 E-value=6.8 Score=28.10 Aligned_cols=44 Identities=14% Similarity=-0.127 Sum_probs=31.7
Q ss_pred CCCH-HHHHHHHHHHhhcCCcccccCCccc----ccHHHHHHHHHHHHHH
Q psy672 38 KQPP-MTRLLAVIQFYATGNFQIFTGDSHG----VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~-~~~l~~~L~~L~~g~~~~~l~~~fg----is~stv~~~~~~v~~~ 82 (314)
.++. +..++.+|+- ..+.+..+|++.++ ++.+||.+++++..+.
T Consensus 32 ~LT~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K 80 (99)
T 2k4b_A 32 NVSNAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKK 80 (99)
T ss_dssp CCCCSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC
Confidence 3443 4456666765 55788899998886 5789999888877653
No 231
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=50.32 E-value=3.8 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.2
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999999999876
No 232
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=50.21 E-value=8.1 Score=26.19 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+.-.|..++...++.++|...|||++|++++-+
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 555666666666888999999999999998865
No 233
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=50.06 E-value=4.5 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.233 Sum_probs=21.6
Q ss_pred hcCCcccccCCcccccHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..|.++.++|+..|||++|+++|.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3677889999999999999998865
No 234
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=49.81 E-value=12 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=22.6
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
-.++.+....|+.+|||++|+++.+++.
T Consensus 61 ~~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 61 RHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3456677889999999999999887753
No 235
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=49.81 E-value=7.5 Score=32.90 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.-++.+-.|..|+. +.+..++++.+|+++||++++++.....
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~ 56 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKL 56 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35566777777888863 4678899999999999999999987764
No 236
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=49.39 E-value=8.7 Score=27.42 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCH-HHHHHHHHHHhh-----cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPP-MTRLLAVIQFYA-----TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~-~~~l~~~L~~L~-----~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++ ...++..|+..+ ...++..|++..++++||+++.+.+....
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~ 63 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAA 63 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHC
Confidence 3544 344555577763 23578899999999999999988876653
No 237
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=49.18 E-value=3.9 Score=26.77 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.3
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++++.+|+|++|+++++++
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 3456788899999999999885
No 238
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=49.12 E-value=5.7 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=22.1
Q ss_pred hcCCcccccCCcccccHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..|.++.++|...|+|+++++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688999999999999999998875
No 239
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=49.08 E-value=11 Score=30.77 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhc-------------CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYAT-------------GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~-------------g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++++++.+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5789999999866542 235567899999999999999998765
No 240
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=48.73 E-value=4.8 Score=32.15 Aligned_cols=28 Identities=7% Similarity=0.258 Sum_probs=24.5
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.++..|.+...+|..+|+|.+|+++++.
T Consensus 153 ~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 153 NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4556889999999999999999999875
No 241
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=48.59 E-value=5.6 Score=33.84 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhh---cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYA---TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~---~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.-++.+-.|..|+ .+.+..++++.+|+++||++++++.....
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~ 65 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCAR 65 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4666777777788886 35778899999999999999999987764
No 242
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=48.42 E-value=8.6 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
++..+. -.|.+|..|.+..++++..++|..||..++.++..-|.
T Consensus 155 Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 155 LTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp SCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 555554 35677889999999999999999999999998887764
No 243
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=48.40 E-value=9.8 Score=31.27 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+..+-+++.|.. +.+..++|+.+|+|++||++.+++....
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 4455566666653 4678899999999999999999887654
No 244
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=48.27 E-value=5.5 Score=30.16 Aligned_cols=43 Identities=5% Similarity=0.028 Sum_probs=29.5
Q ss_pred CCHHH-HHHHHHHHhhcCCcccccCCccc----ccHHHHHHHHHHHHH
Q psy672 39 QPPMT-RLLAVIQFYATGNFQIFTGDSHG----VSQPTMCRLVKEVSK 81 (314)
Q Consensus 39 ~s~~~-~l~~~L~~L~~g~~~~~l~~~fg----is~stv~~~~~~v~~ 81 (314)
+++.+ .++.+|+....+.+..+|++.++ ++.+||++++++...
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 44444 34444443335678899999987 899999988877654
No 245
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=48.19 E-value=5 Score=27.92 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=24.0
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
+-..|.+..++|+..|||++|++++.+.
T Consensus 17 r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3456789999999999999999999863
No 246
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=48.17 E-value=12 Score=27.35 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=31.4
Q ss_pred CCCHHH-HHHHHHHHhhcCCcccccCCccc----ccHHHHHHHHHHHHHH
Q psy672 38 KQPPMT-RLLAVIQFYATGNFQIFTGDSHG----VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~-~l~~~L~~L~~g~~~~~l~~~fg----is~stv~~~~~~v~~~ 82 (314)
.+++.+ .++.+|+. ..+.+..++++.++ ++.+||.+++++....
T Consensus 7 ~Lt~~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (126)
T 1sd4_A 7 EISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp CCCHHHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Confidence 455544 45555554 45688899999987 5899999888877653
No 247
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.77 E-value=8.4 Score=27.66 Aligned_cols=30 Identities=10% Similarity=-0.138 Sum_probs=24.3
Q ss_pred hcCCcccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
..+.++.++++.+ |+|++|+++.+++..+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 3447889999999 59999999988876653
No 248
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.33 E-value=11 Score=30.35 Aligned_cols=27 Identities=4% Similarity=-0.167 Sum_probs=21.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+.+++|+.+|+|.+|++++++....
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 368899999999999988877665543
No 249
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=47.19 E-value=4.8 Score=28.87 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.1
Q ss_pred CcccccCCcccccHHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
.++..+|+..||+.||++|+-+...
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~ 48 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWI 48 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhH
Confidence 4567899999999999999655553
No 250
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=46.67 E-value=5.6 Score=28.66 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=20.7
Q ss_pred cccccCCcccccHHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+..++++.||||++||.+.+.+...
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5678999999999999987776554
No 251
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=46.60 E-value=2.3 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=18.4
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++|+.+|||.+|+.++...
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 3457888999999999998875
No 252
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=46.59 E-value=4.2 Score=35.61 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.3
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++|+..|||.+||+++++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4578999999999999999973
No 253
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=46.54 E-value=8.3 Score=26.99 Aligned_cols=26 Identities=8% Similarity=0.000 Sum_probs=20.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
..+..++++.|+||.+||.+-+.+..
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677999999999999987766544
No 254
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=46.50 E-value=9.5 Score=28.27 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHH--hhcCCcccccCCcccccHHHHHHHHH
Q psy672 45 LLAVIQF--YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 45 l~~~L~~--L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+...|.. ...|.++.++|+..|||+++++++.+
T Consensus 41 lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 41 LAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4434443 34788999999999999999998765
No 255
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=46.43 E-value=7.4 Score=26.81 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=23.7
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+...|.++.++|+..|||++|+++|.+
T Consensus 21 ~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 21 GRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3445788999999999999999998876
No 256
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=46.33 E-value=10 Score=27.49 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 40 s~~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.....+.-.|..++ .|.++.++|+..|||+++++++-+
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34555666665544 788999999999999999998854
No 257
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=46.32 E-value=4.2 Score=35.46 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=0.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+.+++|+..|||.+||+++++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999985
No 258
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=46.27 E-value=4.2 Score=35.42 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++|+..|||.+||+++++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999986
No 259
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=46.02 E-value=5.9 Score=32.37 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=25.4
Q ss_pred HHHHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 48 VIQFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 48 ~L~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
...++..|.+...++..+|+|.+|+++++.+
T Consensus 168 i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 168 VVEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 3344568899999999999999999988753
No 260
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=45.97 E-value=13 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.2
Q ss_pred CcccccCCcccccHHHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+..++++..+++++|+++.+++...
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 58899999999999999998887643
No 261
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=45.70 E-value=5.4 Score=31.78 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=24.8
Q ss_pred HHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 49 IQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 49 L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-++-.+|.++.++|+..|||++|+++|-+
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34567999999999999999999987755
No 262
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.69 E-value=29 Score=26.13 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=40.1
Q ss_pred cccccCHHHHHHhhHHhhhhh--hcc--cCCC-CCCCCHHHHHHHHHHHhhc--CCcccccCCcc--------c--ccHH
Q psy672 8 EALRFSKDVVLNIIFPLARNV--LET--NTMQ-GVKQPPMTRLLAVIQFYAT--GNFQIFTGDSH--------G--VSQP 70 (314)
Q Consensus 8 ~~frmsr~~f~~~L~~~l~~~--~~~--~~~~-~~~~s~~~~l~~~L~~L~~--g~~~~~l~~~f--------g--is~s 70 (314)
+.|.+++.++. ..+...... +.. ..++ ...++.+.. ...+.++.. ..+...++..+ | +|.+
T Consensus 56 ~~lgis~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~-~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~s 133 (149)
T 1k78_A 56 RQLRVSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVV-EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133 (149)
T ss_dssp HHHTCCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHH-HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHH
T ss_pred HHHCcCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHH-HHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHH
Confidence 56889999999 666655432 111 1222 334555433 233334443 34555666555 5 8999
Q ss_pred HHHHHHHHH
Q psy672 71 TMCRLVKEV 79 (314)
Q Consensus 71 tv~~~~~~v 79 (314)
||++++++.
T Consensus 134 TV~r~L~~~ 142 (149)
T 1k78_A 134 SINRIIRTK 142 (149)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999988753
No 263
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=45.57 E-value=10 Score=31.37 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=24.1
Q ss_pred CcccccCCcccccHHHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.++..+|+.+++|++|+++.+++..+
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999888
No 264
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=45.55 E-value=4.7 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.8
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|...|||++|++++.+
T Consensus 27 r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 27 LDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445789999999999999999999876
No 265
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=45.49 E-value=8.3 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=25.0
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+...|.++.++|...|||+++++++-+-
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34668899999999999999999998763
No 266
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.18 E-value=4.5 Score=35.66 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=0.0
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+.+++|+..|||.+||+++++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5689999999999999999986
No 267
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=45.13 E-value=11 Score=27.38 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 40 s~~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.....+.-.|..++ .|.++.++|...|||+++++++-+
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 45556666666554 789999999999999999998865
No 268
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=44.89 E-value=4.6 Score=35.35 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+.+++|+..|||.+||+++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999974
No 269
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=44.88 E-value=4.1 Score=35.48 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+..++|+..|||.+||+++++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35678999999999999999874
No 270
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=44.84 E-value=4.6 Score=31.99 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=0.5
Q ss_pred CCHHHHHHHHHHHhh---cCCcccccCCcccccHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYA---TGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~---~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
.+++++++-+|..+. ...+..++|...|+++.|++|+.++.+
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp C--------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 456777777776654 345778999999999999999988754
No 271
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=44.81 E-value=13 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.1
Q ss_pred hcCCcccccCCcccccHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.++.....+|...|||++|+++.+++
T Consensus 30 ~~~gn~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 30 EYDYDLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HTTTCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35566778999999999999987764
No 272
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=44.68 E-value=5.2 Score=28.90 Aligned_cols=38 Identities=5% Similarity=-0.073 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
..+-+.|.-. ++-..|.++.++|+..|||++|++++.+
T Consensus 12 ~~pG~~Lk~~-lr~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 12 IHPGEILAEE-LGFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCHHHHHHHH-HHHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHH-HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4444444321 2346789999999999999999999877
No 273
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=44.45 E-value=8.4 Score=31.20 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..+++..|. ....+..++|+.+|+|++|+++.+++..+
T Consensus 22 ~~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 22 RRKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp HHHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344544443 35578899999999999999988876643
No 274
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=44.38 E-value=4.7 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=0.0
Q ss_pred CcccccCCcccccHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v 79 (314)
.+..++|+..|||.+||+++++.-
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 356899999999999999999863
No 275
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=44.21 E-value=7.4 Score=27.18 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=23.1
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|+..|||++|+++|.+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345688999999999999999998765
No 276
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=44.03 E-value=4.8 Score=35.15 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=0.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+..++|+..|||.+||+++++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 35689999999999999999986
No 277
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=44.00 E-value=4.8 Score=35.21 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+.+++|+.+|||.+||+++++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999984
No 278
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=43.56 E-value=8 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.-++.+-.|..|+. +.+..++++.+|+++||++++++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~ 63 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL 63 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45567777777888863 4677899999999999999999988765
No 279
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=43.46 E-value=7.7 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHH
Q psy672 41 PMTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 41 ~~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
....+.-.|..++ .|.++.++|+..|||+++++++-+
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3445555555544 789999999999999999998865
No 280
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=43.33 E-value=7 Score=28.53 Aligned_cols=26 Identities=4% Similarity=-0.073 Sum_probs=20.5
Q ss_pred cccccCCcccccHHHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+.+.+++.||||++||.+.+......
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34567889999999999888776653
No 281
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.32 E-value=13 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
..++.++|+.+|+|.+|+.+.+++..+.
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3688899999999999999988877654
No 282
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=43.30 E-value=9.5 Score=31.09 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
..++..+. -.|.+|+.|.+..++++..++|..||..++.+...-|.
T Consensus 148 ~~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 34666664 35667889999999999999999999999987776553
No 283
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=43.20 E-value=8.1 Score=27.90 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=23.4
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|...|||++|+++|-+
T Consensus 18 r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 18 KKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345788999999999999999998866
No 284
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=42.66 E-value=10 Score=31.09 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHhhc---------------CCcccccCCcccccH-HHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYAT---------------GNFQIFTGDSHGVSQ-PTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~---------------g~~~~~l~~~fgis~-stv~~~~~~v~~~ 82 (314)
.+++++|+.+|..|+. ..+..++|...|+|+ .|++|+++++.+.
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 5688999999887651 345568899999999 5999999998753
No 285
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=42.59 E-value=5.2 Score=35.27 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=0.0
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+.+++|+..|||.+||+++++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 5689999999999999999974
No 286
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=42.49 E-value=29 Score=28.98 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=23.9
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...+..++++.+|+|++|++++++....+
T Consensus 24 g~~s~~ELa~~lglS~stVs~hL~~Le~a 52 (232)
T 2qlz_A 24 MECYFSLLSSKVSVSSTAVAKHLKIMERE 52 (232)
T ss_dssp TTTCSSSSCTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45778899999999999999987765543
No 287
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.00 E-value=16 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
+....+..++|+.+|+|.+++++.|++..
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44456777899999999999999998874
No 288
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=41.76 E-value=9.7 Score=29.00 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 48 VIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 48 ~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
++.-+....++...|+..|+|+++|++.+.+.-..+-.
T Consensus 31 ~f~av~e~gS~s~AA~~L~iSqsavS~~I~~LE~~lG~ 68 (135)
T 2ijl_A 31 LMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQ 68 (135)
T ss_dssp HHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSS
T ss_pred HHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 33444444588899999999999999999988877663
No 289
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=41.35 E-value=32 Score=25.67 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=16.2
Q ss_pred ccccCCcccccHHHHHHHHHH
Q psy672 58 QIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 58 ~~~l~~~fgis~stv~~~~~~ 78 (314)
.+.++..||||++||.+.+..
T Consensus 31 e~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 31 TNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 346677999999998876654
No 290
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.28 E-value=8.1 Score=27.57 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=23.7
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
+-..|.++.++|...|||++|+++|.+.
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3457889999999999999999988763
No 291
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=41.25 E-value=10 Score=27.55 Aligned_cols=28 Identities=29% Similarity=0.095 Sum_probs=24.4
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+...|.++.++|...|||++|+++|-+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4456789999999999999999999876
No 292
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=41.22 E-value=5.5 Score=35.24 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.6
Q ss_pred CcccccCCcccccHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+..++|+..|||.+||+++++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4568999999999999999996
No 293
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=41.15 E-value=17 Score=30.74 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH-hccc
Q psy672 46 LAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ-AHVN 89 (314)
Q Consensus 46 ~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~-~~~~ 89 (314)
+-++.-++...++...|+..+||+|++++.+++.-+.+-. ++.+
T Consensus 11 L~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R 55 (303)
T 3isp_A 11 LAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR 55 (303)
T ss_dssp HHHHHHHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEEC
T ss_pred HHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEc
Confidence 3344445555688899999999999999999999999885 4433
No 294
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=41.01 E-value=7.6 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 40 PPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 40 s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
+.-++.+-.|..|+. +.+..++++..|+++||+++++......=
T Consensus 3 ~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G 49 (260)
T 3r4k_A 3 GTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAG 49 (260)
T ss_dssp CHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 445666777777774 35778999999999999999998887653
No 295
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=40.65 E-value=10 Score=29.46 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=23.2
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+...+..++|+.||+|++||.+.+.+...
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~~ 53 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLER 53 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34468889999999999999887776544
No 296
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.64 E-value=5.8 Score=30.81 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLV 76 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~ 76 (314)
...|.++.++|+..|+|++|++++-
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~e 35 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp -------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3467899999999999999999984
No 297
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=40.50 E-value=15 Score=30.27 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHHhh--cCCcccccCCcccccHHHHHHHHHH
Q psy672 45 LLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 45 l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
+.-.|..+. .|.++.++|+.+|+|++|++++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 444454443 5678999999999999999999874
No 298
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=40.37 E-value=12 Score=27.96 Aligned_cols=25 Identities=12% Similarity=-0.099 Sum_probs=19.4
Q ss_pred cccccCCcccccHHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+.+.+|..||||++||.+.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQS 61 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5578999999999999887766553
No 299
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=40.34 E-value=44 Score=27.51 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=31.1
Q ss_pred cCHHHHHHhhHHhhhhhhccc-CCCCCCCCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 12 FSKDVVLNIIFPLARNVLETN-TMQGVKQPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 12 msr~~f~~~L~~~l~~~~~~~-~~~~~~~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
|++.... .+.+.|+..+... -..+..+|.+. ++++.||||+++|...+....
T Consensus 1 m~~~l~~-~v~~~L~~~I~~g~l~pG~~LpsE~----------------~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 1 MSVKAHE-SVMDWVTEELRSGRLKIGDHLPSER----------------ALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp -CHHHHH-HHHHHHHHHHHHTSSCTTCBCCCHH----------------HHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccHHH-HHHHHHHHHHHhCCCCCCCcCCCHH----------------HHHHHHCCCHHHHHHHHHHHH
Confidence 5555666 6677776665321 11233444443 467799999999876666544
No 300
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=39.98 E-value=11 Score=29.76 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCHHHH-HHHHHHHhhc--CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYAT--GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~--g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+- ++..|..-.. +.+..++++.+|++++|+++.+++....
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4655443 4444443332 3799999999999999999888876654
No 301
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=39.75 E-value=16 Score=30.19 Aligned_cols=51 Identities=4% Similarity=-0.053 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 37 VKQPPMTRLLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
...+-+.-|-.++..+. .+.+.+.|++..|||++|++++|..--+.+..+.
T Consensus 4 ~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~ 58 (234)
T 2opt_A 4 APLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVF 58 (234)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHH
Confidence 34455555556665555 2468899999999999999999986666555543
No 302
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=39.46 E-value=16 Score=30.68 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 47 AVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 47 ~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
-++.-++...++...|+..+||++++++.+++.-..+-.
T Consensus 9 ~~f~~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 9 TVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp HHHHHHHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 344445566688999999999999999999999998874
No 303
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=39.34 E-value=9 Score=28.28 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=23.3
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+...|.++.++|...|||++|++++-+
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 445789999999999999999998765
No 304
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=38.86 E-value=21 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCcccccCCcc--cccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSH--GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~f--gis~stv~~~~~~v~~~ 82 (314)
..+++-.|..- ...+...+|..+ |+|.++|++.++...+.
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 44454433221 357888999999 99999999998887664
No 305
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=38.85 E-value=14 Score=31.63 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+|+.++-++.|.++ .|.++.++|...|++.+||...+.+....+....
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 56667766666555 6778999999999999999999988888777643
No 306
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=38.79 E-value=17 Score=28.28 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=42.7
Q ss_pred cCHHHHHHhhHHhhhhhhcccCCCC-CCCCHHHHHHHHHHHhh------cCCcccccCCcccc-cHHHHHHHHHHHHHHH
Q psy672 12 FSKDVVLNIIFPLARNVLETNTMQG-VKQPPMTRLLAVIQFYA------TGNFQIFTGDSHGV-SQPTMCRLVKEVSKAL 83 (314)
Q Consensus 12 msr~~f~~~L~~~l~~~~~~~~~~~-~~~s~~~~l~~~L~~L~------~g~~~~~l~~~fgi-s~stv~~~~~~v~~~l 83 (314)
|+-+.+. ..-.++++.+.+..+.. +..++ ..+..+|..++ +...+..+.+.+++ +..++...+.+|.+.|
T Consensus 6 m~d~~~~-~~~~L~~Dyi~y~l~~~~~~~~p-s~~~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~el 83 (157)
T 2vof_A 6 MAESELM-HIHSLAEHYLQYVLQVPAFESAP-SQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKE 83 (157)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred cCchHHH-HHHHHHHHHHHHHHCCCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 4444444 55555555554322111 11111 34667777776 33456777788888 7888898998888877
Q ss_pred HH
Q psy672 84 AQ 85 (314)
Q Consensus 84 ~~ 85 (314)
..
T Consensus 84 F~ 85 (157)
T 2vof_A 84 FE 85 (157)
T ss_dssp HT
T ss_pred hc
Confidence 74
No 307
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=38.67 E-value=4.9 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.+.+++|+.+|||.+||+++++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46689999999999999999853
No 308
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.52 E-value=17 Score=27.47 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=24.5
Q ss_pred hcCCcccccCCcc-cccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSH-GVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~f-gis~stv~~~~~~v~~~ 82 (314)
....++.++++.. |||.+++++.+++....
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 3457889999999 99999999888776654
No 309
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=38.48 E-value=12 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALA 84 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~ 84 (314)
++..++- .|.++..|.+..++|+.+++|..||..++.+...-|.
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5555443 3556788989999999999999999998888877664
No 310
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=38.40 E-value=6.2 Score=28.52 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=22.5
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
-..|.++.++|...|||++|++++.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44678899999999999999998875
No 311
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=38.39 E-value=5.1 Score=26.70 Aligned_cols=21 Identities=5% Similarity=-0.190 Sum_probs=15.7
Q ss_pred CCccccccccCHHHHHHhhHHh
Q psy672 3 LWTEQEALRFSKDVVLNIIFPL 24 (314)
Q Consensus 3 ~~~~~~~frmsr~~f~~~L~~~ 24 (314)
+-+|++.|.|||+.|. .|=..
T Consensus 36 dedF~~vFgmsr~eF~-~LP~W 56 (68)
T 1qzp_A 36 AEDFSRVFAMSPEEFG-KLALW 56 (68)
T ss_dssp HHHHHHHSSSCHHHHH-HSCHH
T ss_pred HHHHHHHHCcCHHHHH-HChHH
Confidence 3456689999999999 66443
No 312
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=38.38 E-value=8.9 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.1
Q ss_pred cccccCCcccccHHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+.+.++..||||++||.+.+.+...
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3557888999999999988777664
No 313
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.13 E-value=19 Score=25.57 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=23.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
+....+..++|..+|+|.+++++.|++.
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444566789999999999999999987
No 314
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=37.95 E-value=9.5 Score=28.48 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=19.1
Q ss_pred cccccCCcccccHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
+.+.++..||||++||.+.+....
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELE 60 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788899999999988776644
No 315
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=37.40 E-value=21 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=25.8
Q ss_pred HHHHHHHHh----hcCCcccccCCcccccHHHHHHHHH
Q psy672 44 RLLAVIQFY----ATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 44 ~l~~~L~~L----~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
.+.-.|..+ ..|.++.++|...|||++|+++|-+
T Consensus 34 ~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 34 EVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344445444 4578999999999999999988754
No 316
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=37.24 E-value=15 Score=30.76 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=29.5
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
-++...++...|+..+||+|++++.+++.-+.|-.
T Consensus 11 ~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 11 AVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 34444588899999999999999999999998874
No 317
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=36.77 E-value=19 Score=31.40 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCcccccCCc----cc---ccHHHHHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGDS----HG---VSQPTMCRLVKEVSK 81 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~~----fg---is~stv~~~~~~v~~ 81 (314)
=...++.+..|.+...++.. || +|++||.++++++..
T Consensus 12 R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 12 RTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 34566677888888776666 55 999999999998753
No 318
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=36.48 E-value=9.8 Score=28.74 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.5
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+|.+...+|..||+|..++.+++.+.-..
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58889999999999999999999877553
No 319
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=36.28 E-value=6.8 Score=27.46 Aligned_cols=27 Identities=11% Similarity=-0.088 Sum_probs=19.3
Q ss_pred CCCccccccccCHHHHHHhhHHhhhhhh
Q psy672 2 PLWTEQEALRFSKDVVLNIIFPLARNVL 29 (314)
Q Consensus 2 ~~~~~~~~frmsr~~f~~~L~~~l~~~~ 29 (314)
.+-+|++.|.|+|+.|. .|=..=+..+
T Consensus 49 SdedF~~vFgMsr~eF~-~LP~WKq~~l 75 (88)
T 1ujs_A 49 SQEEFYQVFGMTISEFD-RLALWKRNEL 75 (88)
T ss_dssp CTTHHHHHHSSCHHHHT-TSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHH-HChHHHHHHH
Confidence 45567799999999999 7655444333
No 320
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=36.25 E-value=7.5 Score=34.56 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 43 TRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 43 ~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++..| +...+.+..++++.||+|++|+++.+.+..+.
T Consensus 23 ~~iL~~l-~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~ 61 (345)
T 2o0m_A 23 FQILRNI-YWMQPIGRRSLSETMGITERVLRTETDVLKQL 61 (345)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHH-HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444444 34568899999999999999999999877653
No 321
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=35.94 E-value=5.4 Score=26.45 Aligned_cols=21 Identities=0% Similarity=-0.173 Sum_probs=15.6
Q ss_pred CCccccccccCHHHHHHhhHHh
Q psy672 3 LWTEQEALRFSKDVVLNIIFPL 24 (314)
Q Consensus 3 ~~~~~~~frmsr~~f~~~L~~~ 24 (314)
+-+|++.|.|+|+.|. .|=..
T Consensus 35 dedF~~vFgms~~eF~-~LP~W 55 (67)
T 1yu8_X 35 DEDFKAVFGMTRSAFA-NLPLW 55 (67)
T ss_dssp HHHHHHHHSSCHHHHH-TSCHH
T ss_pred HHHHHHHHCcCHHHHH-HChHH
Confidence 3456689999999999 66444
No 322
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=35.60 E-value=10 Score=27.70 Aligned_cols=27 Identities=4% Similarity=-0.121 Sum_probs=23.3
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+...|.++.++|+..|||+++++++-+
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 344788999999999999999998876
No 323
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=35.60 E-value=12 Score=32.05 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhc---CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTRLLAVIQFYAT---GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~l~~~L~~L~~---g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++.-++.+-.|..|+. +.+..++++..|+++||+++++......
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~ 72 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL 72 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35567777788888874 3577899999999999999999888765
No 324
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=35.32 E-value=62 Score=23.59 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
+..+.-+...=.||-.|.+-..++.++||++|-.++.+.+.-
T Consensus 44 IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~ 85 (111)
T 3m8j_A 44 IHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLT 85 (111)
T ss_dssp CCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334454555556799999999999999999998887776544
No 325
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=35.23 E-value=15 Score=29.78 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
++..+.- .|.+|+.|.+..++++..++|..||..++.+...-|
T Consensus 160 Lt~rE~~--vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 160 LTKREQQ--IIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred CCHHHHH--HHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5555543 355578899999999999999999999888865433
No 326
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=34.47 E-value=18 Score=24.82 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=21.5
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
-.++......|+..|||++|+++.+++
T Consensus 51 ~~~~GN~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 51 EMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 345667788999999999999887653
No 327
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=34.34 E-value=21 Score=30.19 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=29.6
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
-++...++...|+..++|+|+|++.+++.-+.+-.
T Consensus 12 ~v~~~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 46 (305)
T 3fxq_A 12 CIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKA 46 (305)
T ss_dssp HHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 34445578899999999999999999999998874
No 328
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=34.12 E-value=5.5 Score=26.43 Aligned_cols=21 Identities=14% Similarity=-0.092 Sum_probs=15.4
Q ss_pred CCccccccccCHHHHHHhhHHh
Q psy672 3 LWTEQEALRFSKDVVLNIIFPL 24 (314)
Q Consensus 3 ~~~~~~~frmsr~~f~~~L~~~ 24 (314)
+-+|++.|.|||+.|. .|=..
T Consensus 35 dedF~~vFgmsr~eF~-~LP~W 55 (67)
T 2k6m_S 35 DEDFEFALDMTRDEYN-ALPAW 55 (67)
T ss_dssp HHHHHHHTSSCHHHHT-TSCHH
T ss_pred HHHHHHHHCcCHHHHH-HCcHH
Confidence 3456689999999998 65433
No 329
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=33.45 E-value=23 Score=28.85 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+..+-+++.|....+-+++|+.+|+|++||+..+++..+.
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45556667777666777899999999999999888876654
No 330
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=32.94 E-value=19 Score=29.82 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 48 VIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 48 ~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
++.-++...++...|+..+||+|++++.+++.-+.+-.
T Consensus 8 ~f~~v~~~~s~t~AA~~L~isq~avS~~i~~LE~~lg~ 45 (291)
T 3szp_A 8 LFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNL 45 (291)
T ss_dssp HHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 34445556678899999999999999999999988874
No 331
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=32.76 E-value=17 Score=30.75 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 44 RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 44 ~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
+|-.++. ++...++...|+..+||+|++++.+++.-+.|-.
T Consensus 14 ~L~~f~~-v~~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 54 (310)
T 2esn_A 14 LLLVFDA-LYRHRNVGTAASELAISASAFSHALGRLRQGLDD 54 (310)
T ss_dssp HHHHHHH-HHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-HHHcCCHHHHHHHhCCChHHHHHHHHHHHHhhCC
Confidence 3444443 4444488899999999999999999999998874
No 332
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=32.59 E-value=23 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 42 ~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
...+.-++.++. ...+..++|..+|+|.+++++.|++..
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445666777776 456778999999999999999998764
No 333
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=32.35 E-value=13 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.4
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
....|.++.++|+..|||+|+++++.+
T Consensus 39 l~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 39 LQQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 355789999999999999999999954
No 334
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=31.64 E-value=18 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=22.4
Q ss_pred HhhcCCcccccCCcccccHHH----HHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPT----MCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~st----v~~~~~ 77 (314)
+...|.++.++|...|+|++| +++|-+
T Consensus 10 R~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 10 RLRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 455788999999999999999 777654
No 335
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=31.38 E-value=23 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=21.5
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+..++|+.+|+|++++.+++.....+
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455789999999999998887766543
No 336
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=31.34 E-value=22 Score=28.92 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=24.1
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
....+..++++.+|+|.+|++..++....
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~ 54 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEE 54 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678889999999999999988876654
No 337
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=31.02 E-value=30 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=22.4
Q ss_pred cCC--cccccCCccccc-HHHHHHHHHHHH
Q psy672 54 TGN--FQIFTGDSHGVS-QPTMCRLVKEVS 80 (314)
Q Consensus 54 ~g~--~~~~l~~~fgis-~stv~~~~~~v~ 80 (314)
.|. ++.++|+.+|++ ++|++++.+...
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~~~l~ 51 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHLKALA 51 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 889999999999 999999877543
No 338
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=30.99 E-value=19 Score=26.22 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=20.9
Q ss_pred CCcccccCCcccccHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
..+..++|+..|+|.+||.|..+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 578889999999999999987754
No 339
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=30.64 E-value=39 Score=23.67 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 42 ~~~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+=+.-.|..+..|...+.++...|+|.+++.++++...+
T Consensus 7 ~eIi~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~ 46 (95)
T 1r7j_A 7 LEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMD 46 (95)
T ss_dssp HHHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3445556666666678889999999999999988877654
No 340
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.59 E-value=24 Score=24.93 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=21.5
Q ss_pred CCcccccCCcccccHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
..+..++|+.+|+|.+++++.|++..
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567789999999999999998864
No 341
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=30.56 E-value=14 Score=30.72 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=26.5
Q ss_pred HHHHHhhcCCcccccCCcccccHHHHHHHHH
Q psy672 47 AVIQFYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 47 ~~L~~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+--++...|.++.++|+..|||+|+++++.+
T Consensus 36 Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 36 IKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 4445567899999999999999999999986
No 342
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=30.52 E-value=6.1 Score=28.14 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=17.7
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++++.||||++||.+.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~ 58 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAV 58 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4567889999999999876554
No 343
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=30.45 E-value=11 Score=32.53 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 47 AVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 47 ~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.++....+|.++...|+..++|+|++++.+++.-+.+-.
T Consensus 8 ~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~ 46 (324)
T 1al3_A 8 YIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGI 46 (324)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 333334444489999999999999999999999887764
No 344
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.21 E-value=35 Score=23.81 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=22.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
..+..++|+.+|+|.+++++.|++..
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45667899999999999999998874
No 345
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.19 E-value=32 Score=28.92 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=31.3
Q ss_pred CCCHHHH-HHHHHHHhhc-CCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 38 KQPPMTR-LLAVIQFYAT-GNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 38 ~~s~~~~-l~~~L~~L~~-g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.+++.+- ++..|+.-.. +.+..++++.++++++|+++.+++....
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3555543 3344432222 3688999999999999999999887764
No 346
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=30.11 E-value=24 Score=30.91 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHhhcC--CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 48 VIQFYATG--NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 48 ~L~~L~~g--~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.|..|..+ .+..++++.||||++|+.+.+....+.
T Consensus 10 Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 10 LIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp HHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34455544 566789999999999999999977653
No 347
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=29.96 E-value=9.3 Score=29.71 Aligned_cols=35 Identities=6% Similarity=-0.185 Sum_probs=27.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
+.+.+++++.-|||++|++++|..--+.+..+...
T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 56 (194)
T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNI 56 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHH
Confidence 46888999999999999999998766666654433
No 348
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=29.36 E-value=9.6 Score=29.79 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=28.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
+.+.+++++.-|||++|++++|..=-+.+..+...
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAAVLQE 62 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999998766666654433
No 349
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=28.94 E-value=28 Score=27.43 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=19.9
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
++.++|+.+|+|++|+++|.+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8889999999999999999863
No 350
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=28.88 E-value=30 Score=24.51 Aligned_cols=35 Identities=6% Similarity=-0.098 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCcccccCC-cccccHHHHHHHHHHHH
Q psy672 45 LLAVIQFYATGNFQIFTGD-SHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 45 l~~~L~~L~~g~~~~~l~~-~fgis~stv~~~~~~v~ 80 (314)
++++|..-. +.+..++++ ..++.+||+++-+.-..
T Consensus 21 iL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~ 56 (95)
T 1bja_A 21 ILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLI 56 (95)
T ss_dssp HHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445554444 788889999 99999999998766543
No 351
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.43 E-value=9.8 Score=29.85 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=25.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHh
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQA 86 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 86 (314)
+.+.+++|+.-|||++|++++|..=-+.+...
T Consensus 32 ~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~ 63 (192)
T 2fq4_A 32 AVTVDKIAERAKVSKATIYKWWPNKAAVVMDG 63 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHCCCHHHHHHHH
Confidence 47889999999999999999997655555543
No 352
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.82 E-value=28 Score=32.01 Aligned_cols=45 Identities=0% Similarity=-0.139 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhh--cCCcccccCCcccccHHHHHHHHHHHHH
Q psy672 37 VKQPPMTRLLAVIQFYA--TGNFQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~--~g~~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
..++..+-..+...+-. .+.+..+|++..+++++|+++++++...
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45766654333222223 4578999999999999999998888665
No 353
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=27.76 E-value=16 Score=27.35 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=23.4
Q ss_pred HhhcCCcccccCCcccccHHHHHHHHH
Q psy672 51 FYATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 51 ~L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
+-..|.++.++|+..|+|+++++++=+
T Consensus 12 R~~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 455899999999999999999998755
No 354
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=27.76 E-value=14 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred cccccCCcccccHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~ 78 (314)
+..++|+.+|||++++.+.+++
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHc
Confidence 4578889999999999877654
No 355
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.57 E-value=9.4 Score=29.45 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=26.6
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..--+.+..+.
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 367789999999999999999987666665544
No 356
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.52 E-value=33 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=21.3
Q ss_pred hcCCcccccCCcccccHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
.++......|...|||++|+++.+++
T Consensus 69 ~~~gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 69 YTLGNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45667788999999999999987664
No 357
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=27.50 E-value=23 Score=27.57 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=31.2
Q ss_pred HHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 47 AVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 47 ~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
.++..+. .+.+.++|++.-|||++|++++|..--..+..+..
T Consensus 16 AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~ 61 (195)
T 3frq_A 16 AATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMME 61 (195)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4444444 34788999999999999999999876666655443
No 358
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=27.42 E-value=32 Score=31.31 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=25.9
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
....+..++++..|+|++||++++++..+.
T Consensus 51 ~~~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 51 KGPISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 345788899999999999999999988873
No 359
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.35 E-value=24 Score=27.38 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=31.2
Q ss_pred HHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 45 LLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 45 l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
|-.++..+. .+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 13 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~ 59 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSV 59 (192)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 334444444 3468899999999999999999987666555544
No 360
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=27.30 E-value=38 Score=26.21 Aligned_cols=41 Identities=17% Similarity=-0.049 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcC---CcccccCCccc-ccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYATG---NFQIFTGDSHG-VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~~g---~~~~~l~~~fg-is~stv~~~~~~v~~~ 82 (314)
..++.+.-..+++. .+..++...++ ||++||++.++...++
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea 73 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR 73 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 45555655566653 34566777788 9999999988876654
No 361
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=27.20 E-value=17 Score=30.53 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 47 AVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 47 ~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
-++.-++...++...|+..++|+|++++.+++.-+.+-.
T Consensus 10 ~~f~~v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~ 48 (306)
T 3fzv_A 10 KYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGV 48 (306)
T ss_dssp HHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-C
T ss_pred HHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 334445556688999999999999999999999998874
No 362
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.09 E-value=42 Score=25.41 Aligned_cols=26 Identities=8% Similarity=-0.111 Sum_probs=18.9
Q ss_pred CcccccCCcc-----cccHHHHHHHHHHHHH
Q psy672 56 NFQIFTGDSH-----GVSQPTMCRLVKEVSK 81 (314)
Q Consensus 56 ~~~~~l~~~f-----gis~stv~~~~~~v~~ 81 (314)
.+..++.+.+ ++|.+||+|.++.+.+
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 4555666555 8999999988776654
No 363
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=27.02 E-value=9.5 Score=29.93 Aligned_cols=36 Identities=8% Similarity=-0.064 Sum_probs=28.6
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
+.+.+++++.-|||++|++++|..=-+.+..+...+
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 67 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDF 67 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHHH
Confidence 468889999999999999999987666666554433
No 364
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.01 E-value=30 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=22.6
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~ 80 (314)
...+..++|+.+|+|.+++++.|++..
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345667899999999999999999874
No 365
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=26.87 E-value=20 Score=25.74 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=21.0
Q ss_pred CcccccCCcccccHHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v 79 (314)
.+..++|+.+|+|.+++++.|++.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788999999999999999987
No 366
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=26.73 E-value=39 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.0
Q ss_pred CcccccCCcccccHHHHHHHHHH
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~ 78 (314)
......|...|||++|+++.+++
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 56678899999999999887654
No 367
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=26.65 E-value=33 Score=30.85 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=25.2
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
...+-.++++..|+|++||++++++..+.
T Consensus 29 ~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 29 GPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp CSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34677899999999999999999988874
No 368
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=26.61 E-value=15 Score=28.65 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=24.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
+.+.+++++.-|||++|++++|..=-+.+
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 46788999999999999999997555544
No 369
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=26.51 E-value=12 Score=29.78 Aligned_cols=35 Identities=6% Similarity=-0.152 Sum_probs=27.5
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
.+.+++++.-|||++|++++|..=-+.+..+...+
T Consensus 38 ~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 72 (218)
T 3gzi_A 38 VSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHET 72 (218)
T ss_dssp CCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 67789999999999999999986666665544333
No 370
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.48 E-value=13 Score=29.47 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=26.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~ 60 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFASVL 60 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 478899999999999999999986655555543
No 371
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=26.21 E-value=8.9 Score=29.27 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=26.0
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 25 ~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (170)
T 3egq_A 25 VSIEEIAREAKVSKSLIFYHFESKQKLLEEAV 56 (170)
T ss_dssp CCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred CcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 57789999999999999999987666655544
No 372
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=26.16 E-value=21 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.8
Q ss_pred hhcCCcccccCCcccccHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVK 77 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~ 77 (314)
...|.++.++|+..|||+++++++-+
T Consensus 21 ~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 21 KSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34788999999999999999999875
No 373
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=26.08 E-value=10 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHhhc----CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 47 AVIQFYAT----GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 47 ~~L~~L~~----g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
.++..+.. +.+.+++++..|||++|++++|..--+.+..+..
T Consensus 17 aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (195)
T 3ppb_A 17 TALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFL 62 (195)
T ss_dssp HHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 44444442 3577899999999999999999876666665443
No 374
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=26.05 E-value=10 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=27.5
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALA 64 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5678889999999999999999987655555544
No 375
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=26.02 E-value=43 Score=27.98 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=18.8
Q ss_pred cccccCCcccccHHHHHHHHHHHHH
Q psy672 57 FQIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 57 ~~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
+..++++.||||+.||.+.+.....
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L~~ 62 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLI 62 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456788999999999877665543
No 376
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=25.89 E-value=10 Score=29.98 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=28.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
+.+.++|++.-|||++|++++|..--+.+..+...+
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~ 69 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELS 69 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHHH
Confidence 367889999999999999999987666666544333
No 377
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=25.61 E-value=28 Score=23.72 Aligned_cols=39 Identities=3% Similarity=0.087 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcCCcccccCCcccccHH-HHHHHHHHHH
Q psy672 41 PMTRLLAVIQFYATGNFQIFTGDSHGVSQP-TMCRLVKEVS 80 (314)
Q Consensus 41 ~~~~l~~~L~~L~~g~~~~~l~~~fgis~s-tv~~~~~~v~ 80 (314)
..++++..|..- .+.+..++|+.+||+.. +|.+.+....
T Consensus 12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le 51 (79)
T 1xmk_A 12 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDME 51 (79)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 355555444333 24677899999999998 8887766544
No 378
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=25.37 E-value=14 Score=29.01 Aligned_cols=47 Identities=9% Similarity=-0.076 Sum_probs=33.3
Q ss_pred HHHHHH-HHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 41 PMTRLL-AVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 41 ~~~~l~-~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
..++++ .++..+. .+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 17 ~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 68 (213)
T 2qtq_A 17 ARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHH
Confidence 445544 4444444 2478899999999999999999987666655544
No 379
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=25.33 E-value=11 Score=29.20 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=28.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
+.+.+++++.-|||++|++++|..=-+.+..+...+
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~ 62 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKY 62 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHHH
Confidence 478899999999999999999987666666554433
No 380
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=25.29 E-value=9.5 Score=29.49 Aligned_cols=34 Identities=0% Similarity=-0.222 Sum_probs=26.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 30 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (191)
T 3on4_A 30 AFSFKDIATAINIKTASIHYHFPSKEDLGVAVIS 63 (191)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHH
Confidence 4778899999999999999999865555555443
No 381
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.93 E-value=10 Score=29.45 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=27.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLALAR 67 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHH
Confidence 3788999999999999999999876666665443
No 382
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.85 E-value=9.9 Score=29.43 Aligned_cols=35 Identities=6% Similarity=-0.027 Sum_probs=27.7
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
+.+.+++++.-|||++|++++|..--+.+..+...
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 62 (194)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999998766666554433
No 383
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=24.82 E-value=27 Score=27.10 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHhhc----CCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 46 LAVIQFYAT----GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 46 ~~~L~~L~~----g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
-.++..+.. +.+.+++++.-|||++|++++|..--+.+..
T Consensus 14 ~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 57 (195)
T 2dg7_A 14 RAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFG 57 (195)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTT
T ss_pred HHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 344444542 3677899999999999999988764444443
No 384
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.78 E-value=14 Score=29.49 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=27.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 35 ~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~ 67 (221)
T 3c2b_A 35 ALTTSGLARAANCSKESLYKWFGDRDGLLAAMI 67 (221)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 468889999999999999999987666555543
No 385
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.49 E-value=11 Score=29.36 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=27.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..--..+..+..
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 57 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHE 57 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHHHHH
Confidence 3678899999999999999999876666555443
No 386
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.20 E-value=13 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=26.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..--+.+..+.
T Consensus 38 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 70 (212)
T 1pb6_A 38 GTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHH
T ss_pred hhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHH
Confidence 467889999999999999999987666655544
No 387
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=24.15 E-value=12 Score=29.21 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=27.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
+.+.++|++.-|||++|++++|..--..+..+...
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQR 68 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHH
Confidence 46888999999999999999998766666654433
No 388
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=23.85 E-value=12 Score=29.41 Aligned_cols=33 Identities=3% Similarity=0.028 Sum_probs=25.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++..|||++|++++|..--+.+..+.
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 64 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVL 64 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 357789999999999999999876655555443
No 389
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=23.83 E-value=12 Score=29.55 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=26.5
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 66 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 467889999999999999999986665555443
No 390
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=23.70 E-value=12 Score=28.90 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.2
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 22 ~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~ 54 (179)
T 2eh3_A 22 GTSVEEIVKRANLSKGAFYFHFKSKEELITEII 54 (179)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHH
Confidence 468899999999999999999976555555443
No 391
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=23.59 E-value=50 Score=28.95 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=24.4
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKAL 83 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l 83 (314)
..+-.++|+.||||+++|++.++...+.-
T Consensus 19 ~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G 47 (323)
T 3rkx_A 19 YISGQSIAESLNISRTAVKKVIDQLKLEG 47 (323)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 35667899999999999999999877643
No 392
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.59 E-value=12 Score=29.34 Aligned_cols=33 Identities=9% Similarity=-0.056 Sum_probs=26.6
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
.+.++|++.-|||++|++++|..--+.+..+..
T Consensus 38 ~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (206)
T 3kz9_A 38 GGHADIAEIAQVSVATVFNYFPTREDLVDEVLN 70 (206)
T ss_dssp CCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 677899999999999999999876666555443
No 393
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=23.58 E-value=35 Score=30.47 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=26.9
Q ss_pred hcCCcccccCCcccccHHHHHHHHHHHHHH
Q psy672 53 ATGNFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 53 ~~g~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
....+-.++++..|+|++||++++++..+.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~ 60 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEK 60 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 666888999999999999999999988874
No 394
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.44 E-value=16 Score=29.01 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=27.6
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3578889999999999999999987666665544
No 395
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=23.42 E-value=48 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.7
Q ss_pred eeeeeceEEEEecCCCCCCCcccCCCCceeeeeeeecCC
Q psy672 114 VGCVDCTHVPIQLPSVENGENFRNRKGTFSLNVQVIGGP 152 (314)
Q Consensus 114 ~g~iDgt~i~i~~P~~~~~~~y~~~k~~~s~~~q~v~d~ 152 (314)
.|++|...+|+. .||++++..+.++|++
T Consensus 38 aGAlDV~~tPi~-----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV-----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE-----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece-----------EeCCCceEEEEEEECC
Confidence 479999999874 4688999999999976
No 396
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=23.12 E-value=17 Score=30.87 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 49 IQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 49 L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
+.-++...++...|+..+||+|++++.+++.-+.|-.
T Consensus 9 F~~va~~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 45 (312)
T 2h9b_A 9 FVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGI 45 (312)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhCCHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 3334555688999999999999999999999887764
No 397
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=23.11 E-value=11 Score=29.95 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=26.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 468889999999999999999987666655543
No 398
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.95 E-value=12 Score=29.37 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 47 AVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 47 ~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
.++..+. .+.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 25 aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (208)
T 3cwr_A 25 AAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVE 70 (208)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4444444 34688899999999999999999876666655443
No 399
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=22.94 E-value=24 Score=29.05 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=16.5
Q ss_pred cccCCcccccHHHHHHHHHHHH
Q psy672 59 IFTGDSHGVSQPTMCRLVKEVS 80 (314)
Q Consensus 59 ~~l~~~fgis~stv~~~~~~v~ 80 (314)
.++++.||||++||.+.+....
T Consensus 35 ~eLa~~~gVSR~tVReAL~~L~ 56 (239)
T 1hw1_A 35 RELSELIGVTRTTLREVLQRLA 56 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4567799999999887666544
No 400
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=22.66 E-value=16 Score=28.86 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=27.1
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..=-..+..+..
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (216)
T 3s5r_A 30 ATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIE 63 (216)
T ss_dssp TCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999866666555443
No 401
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.65 E-value=13 Score=28.95 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.7
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-..+..+.
T Consensus 28 ~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~ 60 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHFKTKDEILAEVI 60 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 468889999999999999999986655555543
No 402
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.45 E-value=13 Score=29.38 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHH-HHHHHhhc----CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 42 MTRLL-AVIQFYAT----GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 42 ~~~l~-~~L~~L~~----g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
.++++ .++..+.. +.+.++|++.-|||++|++++|..--+.+..+...
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 85 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNS 85 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 44444 44555542 35778999999999999999998666666554433
No 403
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=22.36 E-value=23 Score=28.20 Aligned_cols=27 Identities=7% Similarity=-0.120 Sum_probs=23.3
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKE 78 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~ 78 (314)
...|.++.++|+..|+|+++++++-+.
T Consensus 20 ~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 20 EQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 347889999999999999999988763
No 404
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=22.28 E-value=23 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.2
Q ss_pred CCcccccCCcccccHHHHHHHHHHH
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
..+..++|+..|+|.+||.|..+..
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4677899999999999999887654
No 405
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.22 E-value=11 Score=29.64 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=28.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhccc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVN 89 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~ 89 (314)
+.+.++|++.-|||++|++++|..--+.+..+...
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 63 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGR 63 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHHHHHHHHHHH
Confidence 46888999999999999999998766666655433
No 406
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.21 E-value=14 Score=29.04 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=26.2
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 367788999999999999999986555555544
No 407
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.05 E-value=14 Score=29.51 Aligned_cols=46 Identities=7% Similarity=-0.081 Sum_probs=32.3
Q ss_pred HHHHH-HHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 42 MTRLL-AVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 42 ~~~l~-~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.++++ .++..+. .+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 32 r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~ 82 (222)
T 3bru_A 32 HQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALI 82 (222)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHH
Confidence 34443 4555554 2367789999999999999999987655555443
No 408
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=21.87 E-value=28 Score=28.93 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=19.0
Q ss_pred cccCCcccccHHHHHHHHHHHHHH
Q psy672 59 IFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 59 ~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
.++++.||||+.||.+.+......
T Consensus 37 ~~La~~~~vSr~tvr~Al~~L~~~ 60 (236)
T 3edp_A 37 TALQEIYSSSRTTIRRAVDLLVEE 60 (236)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456779999999999888776653
No 409
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=21.46 E-value=20 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 52 YATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 52 L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
++...++...|+..+||++++++.+++.-+.+-.
T Consensus 9 v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg~ 42 (300)
T 3mz1_A 9 VVETGNFTRASASLNMPKATVTNLIQGLEAHLRT 42 (300)
T ss_dssp ----------------------------------
T ss_pred HHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 4456688899999999999999999999887764
No 410
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=21.42 E-value=1.3e+02 Score=24.04 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhccccc
Q psy672 39 QPPMTRLLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYV 91 (314)
Q Consensus 39 ~s~~~~l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~i 91 (314)
.+|..-.+.+|+.-+ ...+..+++..+|+++.|+.+..+.+.+.+....+.++
T Consensus 139 ~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~ 195 (207)
T 1c9b_A 139 RSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDF 195 (207)
T ss_dssp CCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSC
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHH
Confidence 445544444443322 23456788889999999999999998887776555444
No 411
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=21.35 E-value=45 Score=26.43 Aligned_cols=40 Identities=20% Similarity=0.037 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhh-cCCcccccCCccc-ccHHHHHHHHHHHHHH
Q psy672 42 MTRLLAVIQFYA-TGNFQIFTGDSHG-VSQPTMCRLVKEVSKA 82 (314)
Q Consensus 42 ~~~l~~~L~~L~-~g~~~~~l~~~fg-is~stv~~~~~~v~~~ 82 (314)
..++.+ |..|. ...+..+++..+| +|++|++..++...++
T Consensus 23 P~Rl~i-l~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 23 PLRWRI-TQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHHH-HHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 344443 23444 4456678888886 9999999988776654
No 412
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=21.28 E-value=19 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=33.8
Q ss_pred HHHHHHHhhc----CCcccccCCcccccHHHHHHHHHHHHHHHHHhcccc
Q psy672 45 LLAVIQFYAT----GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNY 90 (314)
Q Consensus 45 l~~~L~~L~~----g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~~~ 90 (314)
|-.++..+.. +.+.++|++.-|||++|++++|..=-..+..+....
T Consensus 45 l~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~~ 94 (214)
T 2guh_A 45 VDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFR 94 (214)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345555553 357789999999999999999987777776655444
No 413
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=21.22 E-value=14 Score=29.24 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=25.5
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHh
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQA 86 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 86 (314)
+.+.+++++.-|||++|++.+|..=-+.+..+
T Consensus 30 ~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~ 61 (210)
T 3vib_A 30 RTSLNEIAQAAGVTRDALYWHFKNKEDLFDAL 61 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHH
Confidence 46788999999999999999998655544443
No 414
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.20 E-value=34 Score=24.75 Aligned_cols=26 Identities=8% Similarity=-0.109 Sum_probs=21.1
Q ss_pred cCCcccccCCcccccHHHHHHHHHHH
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEV 79 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v 79 (314)
...+..++|..+|+|.+++++.|++.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 34566788999999999999998763
No 415
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=20.99 E-value=43 Score=27.60 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhhc----CCcccccCCcccccHHHHHHHHHHHHHHHHHh
Q psy672 37 VKQPPMTRLLAVIQFYAT----GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQA 86 (314)
Q Consensus 37 ~~~s~~~~l~~~L~~L~~----g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 86 (314)
...+-+.-|-.++..+.. +.+.+.|++..|||++|++++|..=-..+..+
T Consensus 27 ~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a~ 80 (241)
T 2hxi_A 27 RRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAV 80 (241)
T ss_dssp -CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCCHHHHHHHH
Confidence 345555556677776663 36888999999999999999998655554443
No 416
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.98 E-value=15 Score=29.19 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=25.3
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHh
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQA 86 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~ 86 (314)
+.+.++|++.-|||++|++++|..=-+.+..+
T Consensus 31 ~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~ 62 (210)
T 2wui_A 31 TTAMADLADAAGVSRGAVYGHYKNKIEVCLAM 62 (210)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 46889999999999999999987544444443
No 417
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.93 E-value=13 Score=29.17 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=26.3
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 29 ~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 29 LTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 577899999999999999999866555555443
No 418
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.93 E-value=15 Score=28.94 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=25.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.++|++.-|||++|++++|..=-..+..+.
T Consensus 34 ~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~ 66 (204)
T 2ibd_A 34 ATTVRDIADAAGILSGSLYHHFDSKESMVDEIL 66 (204)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHH
Confidence 468899999999999999999976555444443
No 419
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=20.91 E-value=28 Score=29.05 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=18.8
Q ss_pred ccccCCcccccHHHHHHHHHHHHH
Q psy672 58 QIFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 58 ~~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.+++++.||||+.||.+.+.....
T Consensus 37 e~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 37 EREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356777999999999887776554
No 420
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.84 E-value=17 Score=29.29 Aligned_cols=43 Identities=21% Similarity=-0.011 Sum_probs=31.7
Q ss_pred HHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 45 LLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 45 l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
|-.++..+. .+.+.++|++.-|||++|++++|..--+.+..+.
T Consensus 46 l~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~ 92 (225)
T 2id3_A 46 LLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLL 92 (225)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 334554544 2478889999999999999999987666666543
No 421
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=20.84 E-value=21 Score=30.57 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 50 QFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 50 ~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
.-++...++...|+..+||+|++++.+++.-+.|-.
T Consensus 10 ~~vae~gS~s~AA~~L~isq~avS~~I~~LE~~lG~ 45 (313)
T 2h98_A 10 VTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGI 45 (313)
T ss_dssp ------------------------------------
T ss_pred HHHHHhCCHHHHHHHhCCCccHHHHHHHHHHHHhCC
Confidence 334555688999999999999999999998887763
No 422
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.77 E-value=26 Score=26.07 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=13.7
Q ss_pred eeeeecCCcccEEEeec
Q psy672 145 NVQVIGGPNLEIWDVVS 161 (314)
Q Consensus 145 ~~q~v~d~~g~i~~~~~ 161 (314)
...++|..-|++..+..
T Consensus 81 h~HliC~~Cg~v~~~~~ 97 (131)
T 2o03_A 81 HHHLVCRSCGSTIEVGD 97 (131)
T ss_dssp CEEEEETTTCCEEEECC
T ss_pred CCEEEeCCCCCEEEECC
Confidence 35788999999998864
No 423
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.72 E-value=30 Score=28.71 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=17.6
Q ss_pred cccCCcccccHHHHHHHHHHHHH
Q psy672 59 IFTGDSHGVSQPTMCRLVKEVSK 81 (314)
Q Consensus 59 ~~l~~~fgis~stv~~~~~~v~~ 81 (314)
.++++.||||++||.+.+.....
T Consensus 33 ~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 33 ETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677999999999877666443
No 424
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.67 E-value=15 Score=29.09 Aligned_cols=34 Identities=3% Similarity=-0.013 Sum_probs=27.0
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4678899999999999999999876665555443
No 425
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=20.62 E-value=39 Score=28.24 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 44 RLLAVIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 44 ~l~~~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
++-++ .-++...++...|+..|+|++++++.+++..+.+-.
T Consensus 24 ~l~~f-~~v~~~gs~~~aa~~l~~s~~~~s~~i~~le~~lg~ 64 (265)
T 1b9m_A 24 RISLL-KHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEH 64 (265)
T ss_dssp HHHHH-HHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHH-HHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 34443 344445578889999999999999999988888774
No 426
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.56 E-value=22 Score=28.03 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=26.4
Q ss_pred cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 54 TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 54 ~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~ 63 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSKRDLFEKTL 63 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHH
Confidence 3478899999999999999999976444444443
No 427
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.53 E-value=15 Score=29.73 Aligned_cols=44 Identities=9% Similarity=-0.050 Sum_probs=31.4
Q ss_pred HHHHHHHhh----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 45 LLAVIQFYA----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 45 l~~~L~~L~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
|-.++..+. .+.+.++|++..|||++|++++|..--+.+..+..
T Consensus 49 l~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~ 96 (229)
T 3bni_A 49 LDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQ 96 (229)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHH
Confidence 334444444 24688899999999999999999876665555443
No 428
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.46 E-value=13 Score=29.11 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=26.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhcc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHV 88 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~~ 88 (314)
+.+.+++++.-|||++|++++|..=-+.+..+..
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 68 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQ 68 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHH
Confidence 4678899999999999999999866665555443
No 429
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.40 E-value=14 Score=29.35 Aligned_cols=33 Identities=3% Similarity=-0.078 Sum_probs=26.7
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.++|++.-|||++|++++|..=-+.+..+.
T Consensus 23 ~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~ 55 (212)
T 3rh2_A 23 TITTNHIAAHLDISPGNLYYHFRNKEDIIRCIF 55 (212)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 367789999999999999999987666655544
No 430
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=20.29 E-value=20 Score=28.41 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-..+..+.
T Consensus 32 ~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~ 64 (211)
T 3bhq_A 32 GTSMEEIATKAGASKQTVYKHFTDKETLFGEVV 64 (211)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 478899999999999999999976444444433
No 431
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.26 E-value=10 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=25.8
Q ss_pred CCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 55 GNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 55 g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
+.+.+++++.-|||++|++++|..=-+.+..+.
T Consensus 27 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 59 (199)
T 3qbm_A 27 GTAISDIMAATGLEKGGIYRHFESKEQLALAAF 59 (199)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHH
Confidence 467889999999999999999876555555443
No 432
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.25 E-value=7 Score=30.03 Aligned_cols=32 Identities=9% Similarity=-0.142 Sum_probs=25.4
Q ss_pred CcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 56 NFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 56 ~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.+.+++++..|||++|++++|..--+.+..+.
T Consensus 33 ~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (177)
T 3kkc_A 33 ITVQDVIGLANVGRSTFYSHYESKEVLLKELC 64 (177)
T ss_dssp CCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHH
T ss_pred hhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHH
Confidence 56788999999999999999876666655543
No 433
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=20.20 E-value=22 Score=30.33 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHhhcCCcccccCCcccccHHHHHHHHHHHHHHHHH
Q psy672 48 VIQFYATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQ 85 (314)
Q Consensus 48 ~L~~L~~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~ 85 (314)
++.-++...++...|+..+||+|++++.+++.-+.|-.
T Consensus 21 ~f~~v~~~gs~t~AA~~L~isq~avS~~I~~LE~~lg~ 58 (315)
T 1uth_A 21 VFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALND 58 (315)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 33344555688999999999999999999998887763
No 434
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=20.11 E-value=60 Score=24.54 Aligned_cols=44 Identities=14% Similarity=0.011 Sum_probs=28.0
Q ss_pred CCHHHHHHH-HHHHhhcC-----CcccccCCcccccHHHHHHHHHHHHHH
Q psy672 39 QPPMTRLLA-VIQFYATG-----NFQIFTGDSHGVSQPTMCRLVKEVSKA 82 (314)
Q Consensus 39 ~s~~~~l~~-~L~~L~~g-----~~~~~l~~~fgis~stv~~~~~~v~~~ 82 (314)
+|.....++ +|.+|+.. .+-.++|+.+|+|..++.+++.....+
T Consensus 6 ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp -CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444444443 45556532 355689999999999888777765443
No 435
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=20.02 E-value=13 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHHHHHh--h----cCCcccccCCcccccHHHHHHHHHHHHHHHHHhc
Q psy672 42 MTRLLAVIQFY--A----TGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAH 87 (314)
Q Consensus 42 ~~~l~~~L~~L--~----~g~~~~~l~~~fgis~stv~~~~~~v~~~l~~~~ 87 (314)
.++++-++..| + .+.+.+++++.-|||++|++++|..--+.+..+.
T Consensus 21 r~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~~ 72 (185)
T 3o60_A 21 QTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQI 72 (185)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 44555554444 4 2367789999999999999999986665555443
Done!