RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy672
         (314 letters)



>d1uyja_ f.8.1.2 (A:) Epsilon-toxin, ETX {Clostridium perfringens
           [TaxId: 1502]}
          Length = 280

 Score = 34.1 bits (78), Expect = 0.014
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 35  QGVKQPPMTRLLAVIQFY---ATGNFQIFTGDSHGVSQPTMCRLVKEVSKALAQAHVNYV 91
           Q +  P  T +  +         GN +   G   G     +   +         +  + V
Sbjct: 152 QDILVPANTTVEVIAYLKKVNVKGNVK-LVGQVSGSEWGEIPSYLAFPRDGYKFSLSDTV 210

Query: 92  KFPEQLAPTKVAFQGIGNFPGVVG 115
              +      +   G GN+  V+G
Sbjct: 211 NKSDLNEDGTININGKGNYSAVMG 234


>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 144

 Score = 30.4 bits (68), Expect = 0.15
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 218 YNKAHIKTRNSVERLFGIWKRRF 240
           Y      TR  +  +F +W    
Sbjct: 94  YLLVDNTTRTKLINMFKLWLNPN 116


>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 65 HGVSQPTMCRLVKEVSKALAQAHVNYVKFP 94
           G+    +  L +   KA   ++  Y  F 
Sbjct: 3  GGIEDRQLEALKRAALKACELSYSPYSHFR 32


>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy
           grass (Phleum pratense) [TaxId: 15957]}
          Length = 95

 Score = 24.7 bits (54), Expect = 5.8
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 139 KGTFSLNVQVIGGPNLEIWDVV-SGW-PGSVHDS 170
            G F++     GG   E  DV+  GW   + ++S
Sbjct: 62  TGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,183,831
Number of extensions: 53847
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 4
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)