Query psy6720
Match_columns 182
No_of_seqs 123 out of 283
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:41:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201|consensus 100.0 2.1E-66 4.7E-71 457.0 10.0 160 4-164 192-356 (371)
2 PLN02920 pantothenate kinase 1 100.0 7.6E-58 1.7E-62 411.7 17.8 159 6-165 185-350 (398)
3 PF03630 Fumble: Fumble ; Int 100.0 2.2E-58 4.9E-63 409.9 12.4 160 5-165 175-340 (341)
4 PLN02902 pantothenate kinase 100.0 9.5E-56 2.1E-60 425.8 17.0 161 5-166 233-400 (876)
5 PTZ00297 pantothenate kinase; 100.0 4.9E-53 1.1E-57 427.1 17.2 162 5-167 1234-1446(1452)
6 TIGR00555 panK_eukar pantothen 100.0 8.7E-52 1.9E-56 359.4 15.9 158 2-163 116-278 (279)
7 COG5146 PanK Pantothenate kina 100.0 9.8E-51 2.1E-55 348.2 12.6 159 5-164 164-329 (342)
8 PRK13317 pantothenate kinase; 100.0 5E-40 1.1E-44 284.9 16.1 157 2-163 111-270 (277)
9 TIGR03286 methan_mark_15 putat 98.8 8.7E-08 1.9E-12 87.8 12.6 129 10-162 267-398 (404)
10 TIGR00241 CoA_E_activ CoA-subs 97.5 0.0021 4.7E-08 54.3 11.8 120 15-162 123-246 (248)
11 TIGR02259 benz_CoA_red_A benzo 96.4 0.047 1E-06 50.8 11.3 125 15-162 300-429 (432)
12 TIGR02261 benz_CoA_red_D benzo 96.2 0.064 1.4E-06 47.0 10.8 126 15-162 130-259 (262)
13 TIGR03192 benz_CoA_bzdQ benzoy 95.8 0.15 3.3E-06 45.3 11.2 123 15-161 158-282 (293)
14 PRK09604 UGMP family protein; 95.7 0.15 3.3E-06 45.4 11.1 139 4-151 146-290 (332)
15 TIGR03723 bact_gcp putative gl 95.5 0.12 2.6E-06 45.7 9.7 143 4-151 145-295 (314)
16 TIGR03722 arch_KAE1 universal 95.3 0.13 2.7E-06 45.5 8.9 137 2-150 136-277 (322)
17 PRK14878 UGMP family protein; 95.0 0.17 3.8E-06 44.8 9.2 134 2-150 135-276 (323)
18 COG1924 Activator of 2-hydroxy 92.7 0.95 2.1E-05 41.9 9.4 113 23-161 270-384 (396)
19 COG0533 QRI7 Metal-dependent p 91.9 1 2.2E-05 41.1 8.5 139 6-150 147-296 (342)
20 TIGR01312 XylB D-xylulose kina 91.9 5.6 0.00012 36.2 13.4 122 6-135 286-413 (481)
21 TIGR00329 gcp_kae1 metallohydr 91.5 0.96 2.1E-05 39.7 7.8 64 82-149 229-292 (305)
22 PTZ00340 O-sialoglycoprotein e 91.5 1 2.3E-05 40.9 8.2 64 83-150 235-298 (345)
23 COG0068 HypF Hydrogenase matur 90.6 1.4 3E-05 43.8 8.6 67 81-151 663-729 (750)
24 PTZ00294 glycerol kinase-like 89.9 10 0.00022 35.2 13.4 121 7-135 303-429 (504)
25 TIGR00143 hypF [NiFe] hydrogen 88.6 2.2 4.8E-05 42.2 8.4 65 82-150 629-693 (711)
26 PRK15027 xylulokinase; Provisi 87.8 16 0.00034 33.8 13.1 122 6-135 283-409 (484)
27 TIGR01314 gntK_FGGY gluconate 87.4 18 0.00039 33.6 13.2 98 31-135 321-424 (505)
28 PRK09605 bifunctional UGMP fam 86.9 3.1 6.8E-05 38.9 8.0 64 83-150 217-280 (535)
29 COG1070 XylB Sugar (pentulose 86.2 16 0.00035 34.1 12.3 146 5-163 293-448 (502)
30 TIGR01311 glycerol_kin glycero 83.4 27 0.00059 32.3 12.4 117 11-135 300-422 (493)
31 PLN02295 glycerol kinase 80.0 44 0.00095 31.2 12.6 123 5-135 302-435 (512)
32 PF03702 UPF0075: Uncharacteri 77.7 7.4 0.00016 35.6 6.5 106 23-134 194-306 (364)
33 TIGR00744 ROK_glcA_fam ROK fam 77.6 22 0.00047 30.5 9.1 70 86-155 226-299 (318)
34 PF00814 Peptidase_M22: Glycop 77.5 20 0.00042 31.0 8.8 128 6-149 124-254 (268)
35 PRK04123 ribulokinase; Provisi 76.3 69 0.0015 30.1 13.0 124 7-136 324-463 (548)
36 PRK00047 glpK glycerol kinase; 75.9 67 0.0015 29.8 13.2 120 8-135 301-426 (498)
37 KOG2517|consensus 72.6 44 0.00094 32.3 10.4 125 16-154 320-450 (516)
38 PRK09585 anmK anhydro-N-acetyl 71.1 13 0.00027 34.2 6.3 107 23-136 196-310 (365)
39 PF00871 Acetate_kinase: Aceto 70.8 19 0.0004 33.2 7.4 52 86-137 294-346 (388)
40 TIGR01234 L-ribulokinase L-rib 65.1 1.2E+02 0.0027 28.4 13.0 122 8-135 322-459 (536)
41 PRK12440 acetate kinase; Revie 64.9 56 0.0012 30.5 9.3 54 87-140 295-349 (397)
42 PRK12379 propionate/acetate ki 62.7 63 0.0014 30.1 9.1 106 29-139 237-345 (396)
43 PF02543 CmcH_NodU: Carbamoylt 62.1 52 0.0011 29.8 8.4 125 18-149 52-194 (360)
44 PF02782 FGGY_C: FGGY family o 61.3 78 0.0017 24.8 14.4 54 81-135 117-172 (198)
45 PRK10331 L-fuculokinase; Provi 60.3 1.4E+02 0.003 27.4 12.2 93 31-135 317-412 (470)
46 PLN02669 xylulokinase 60.0 1.6E+02 0.0035 28.1 12.9 54 82-136 416-469 (556)
47 PRK09557 fructokinase; Reviewe 56.8 1.3E+02 0.0027 25.8 9.6 52 87-139 220-271 (301)
48 TIGR00016 ackA acetate kinase. 56.5 95 0.0021 29.0 9.2 105 29-139 246-355 (404)
49 PRK03011 butyrate kinase; Prov 51.8 72 0.0016 29.0 7.5 54 85-139 267-322 (358)
50 TIGR02707 butyr_kinase butyrat 50.3 70 0.0015 28.9 7.2 54 85-139 265-320 (351)
51 PRK03958 tRNA 2'-O-methylase; 50.0 35 0.00076 28.4 4.8 57 99-163 18-74 (176)
52 COG2377 Predicted molecular ch 47.7 54 0.0012 30.4 6.1 50 82-134 263-312 (371)
53 PF03830 PTSIIB_sorb: PTS syst 44.5 22 0.00047 28.4 2.7 49 100-152 14-62 (151)
54 TIGR00854 pts-sorbose PTS syst 43.8 34 0.00073 27.4 3.7 36 100-135 14-49 (151)
55 PF01869 BcrAD_BadFG: BadF/Bad 43.1 96 0.0021 26.0 6.6 74 83-161 190-267 (271)
56 PRK05082 N-acetylmannosamine k 42.5 2.1E+02 0.0046 24.2 8.7 52 86-138 208-259 (291)
57 PRK13310 N-acetyl-D-glucosamin 41.0 2.3E+02 0.0049 24.1 9.3 52 85-137 219-270 (303)
58 TIGR02628 fuculo_kin_coli L-fu 41.0 1.2E+02 0.0025 28.0 7.3 103 34-152 323-427 (465)
59 PRK11425 PTS system N-acetylga 40.6 40 0.00086 27.2 3.7 50 100-153 16-65 (157)
60 PRK09698 D-allose kinase; Prov 39.1 2.3E+02 0.005 24.0 8.4 65 91-155 216-285 (302)
61 cd00001 PTS_IIB_man PTS_IIB, P 38.7 45 0.00097 26.6 3.7 36 100-135 13-48 (151)
62 PRK12408 glucokinase; Provisio 35.4 1.5E+02 0.0032 26.3 6.8 75 85-161 245-327 (336)
63 PRK09756 PTS system N-acetylga 34.9 55 0.0012 26.4 3.7 50 100-152 18-67 (158)
64 PRK10939 autoinducer-2 (AI-2) 34.5 3.9E+02 0.0084 24.9 11.1 53 82-135 378-432 (520)
65 PF02685 Glucokinase: Glucokin 32.5 1.8E+02 0.0038 26.0 6.8 77 84-161 226-309 (316)
66 TIGR02627 rhamnulo_kin rhamnul 29.5 2.4E+02 0.0052 25.8 7.4 55 81-136 355-411 (454)
67 PRK15088 PTS system mannose-sp 26.7 95 0.0021 27.9 4.1 36 100-135 177-212 (322)
68 COG0375 HybF Zn finger protein 26.6 2.9E+02 0.0062 21.5 6.2 46 95-143 6-55 (115)
69 PF13433 Peripla_BP_5: Peripla 26.0 43 0.00094 30.8 1.8 52 97-155 119-171 (363)
70 PRK07058 acetate kinase; Provi 26.0 2.6E+02 0.0056 26.2 6.9 102 29-139 241-346 (396)
71 PRK10640 rhaB rhamnulokinase; 26.0 2.6E+02 0.0057 25.9 7.0 103 30-136 293-399 (471)
72 PF14034 Spore_YtrH: Sporulati 25.8 66 0.0014 24.6 2.5 31 13-43 12-42 (102)
73 PRK07157 acetate kinase; Provi 25.4 2.1E+02 0.0045 26.8 6.2 53 87-139 294-348 (400)
74 PF01973 MAF_flag10: Protein o 24.5 79 0.0017 24.8 2.9 30 92-121 135-164 (170)
75 PRK10343 RNA-binding protein Y 24.5 1.7E+02 0.0037 22.0 4.5 40 100-140 6-45 (97)
76 CHL00194 ycf39 Ycf39; Provisio 24.4 2.9E+02 0.0064 23.5 6.6 50 105-155 95-148 (317)
77 KOG2708|consensus 24.2 5.3E+02 0.011 23.2 8.2 71 80-155 223-293 (336)
78 COG1303 Uncharacterized protei 23.8 1.3E+02 0.0027 25.2 4.0 58 99-163 19-76 (179)
79 PRK00180 acetate kinase A/prop 22.9 2.9E+02 0.0063 25.8 6.6 106 29-139 242-351 (402)
80 TIGR00253 RNA_bind_YhbY putati 21.7 2.2E+02 0.0049 21.2 4.7 48 101-151 5-52 (95)
81 PHA01808 putative structural p 21.6 81 0.0018 23.9 2.2 15 45-59 52-66 (98)
82 PRK00292 glk glucokinase; Prov 21.5 4.7E+02 0.01 22.5 7.4 45 86-130 228-274 (316)
83 TIGR00749 glk glucokinase, pro 20.5 2.8E+02 0.006 24.0 5.8 38 86-123 234-272 (316)
No 1
>KOG2201|consensus
Probab=100.00 E-value=2.1e-66 Score=456.97 Aligned_cols=160 Identities=56% Similarity=0.832 Sum_probs=156.7
Q ss_pred CCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccccc
Q psy6720 4 PNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEK 78 (182)
Q Consensus 4 ~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~ 78 (182)
.+++|+|||||++||||||||++|||||++|||+++||++||+++|||+|+||||++|+++| |||||||+.+.+|
T Consensus 192 ~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK 271 (371)
T KOG2201|consen 192 GPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEK 271 (371)
T ss_pred cCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720 79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI 158 (182)
Q Consensus 79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga 158 (182)
+.++++||+|+|||.||+|||||+|+|+|+++|++||||+|+|+|+||++|++|++|++|||+|++||+|||||||+ ||
T Consensus 272 ~~~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYl-Ga 350 (371)
T KOG2201|consen 272 ELSVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLSYAINFWSKGELKALFLRHEGYL-GA 350 (371)
T ss_pred ccccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHHHHHHHHhccchHHhHhhhccchh-HH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHhhc
Q psy6720 159 FDHWTS 164 (182)
Q Consensus 159 ~~a~~~ 164 (182)
++|+++
T Consensus 351 lGAfL~ 356 (371)
T KOG2201|consen 351 LGAFLS 356 (371)
T ss_pred HHHHhh
Confidence 999886
No 2
>PLN02920 pantothenate kinase 1
Probab=100.00 E-value=7.6e-58 Score=411.66 Aligned_cols=159 Identities=42% Similarity=0.642 Sum_probs=149.2
Q ss_pred CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCC-CCCCcc-----ccccccccccccc-
Q psy6720 6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGG-SYERFL-----GMFSFGHMNSKEK- 78 (182)
Q Consensus 6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~-~~~~lg-----iASsFGK~~~~~~- 78 (182)
++|+|||||+|||||||||++|||+++||+|+++||++||+++|||+|+||||+ +|+++| |||||||+....+
T Consensus 185 ~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~ 264 (398)
T PLN02920 185 GKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKE 264 (398)
T ss_pred CcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCCCCCccceeeccCcccccccc
Confidence 499999999999999999999999999999999999999999999999999996 788775 9999999976332
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720 79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI 158 (182)
Q Consensus 79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga 158 (182)
.+++++||+|+|||.||+|||||+|+++|++++++||||+|+|+++||++|++|++|++|||+++++|+|||||||+ ||
T Consensus 265 ~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYl-GA 343 (398)
T PLN02920 265 LEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFL-GA 343 (398)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchh-HH
Confidence 25789999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred hHHhhcC
Q psy6720 159 FDHWTSH 165 (182)
Q Consensus 159 ~~a~~~~ 165 (182)
++|++.-
T Consensus 344 lGAfl~~ 350 (398)
T PLN02920 344 LGAFMSY 350 (398)
T ss_pred HHHHHhc
Confidence 8887553
No 3
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=2.2e-58 Score=409.93 Aligned_cols=160 Identities=49% Similarity=0.833 Sum_probs=140.4
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----cccccccccccccc
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEKR 79 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~~ 79 (182)
+++|+|||||+|||||||||++||||++||||+++||++||+++|||+|+||||++|++++ |||||||+....++
T Consensus 175 ~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~ 254 (341)
T PF03630_consen 175 PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKR 254 (341)
T ss_dssp TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH
T ss_pred CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccc
Confidence 5679999999999999999999999999999999999999999999999999999998765 99999999876533
Q ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720 80 -ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI 158 (182)
Q Consensus 80 -~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga 158 (182)
+++++||+|+|||+||++||||+|+++|+++|++||||+|+++++||.+|+++++|++|||+++++|+|+||+||+ ||
T Consensus 255 ~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~-ga 333 (341)
T PF03630_consen 255 KDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYL-GA 333 (341)
T ss_dssp -CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSH-HH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchh-HH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHhhcC
Q psy6720 159 FDHWTSH 165 (182)
Q Consensus 159 ~~a~~~~ 165 (182)
+||+..+
T Consensus 334 lGa~l~~ 340 (341)
T PF03630_consen 334 LGAFLKH 340 (341)
T ss_dssp HHHHHTH
T ss_pred HHHHHhc
Confidence 9888753
No 4
>PLN02902 pantothenate kinase
Probab=100.00 E-value=9.5e-56 Score=425.78 Aligned_cols=161 Identities=37% Similarity=0.626 Sum_probs=150.5
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCC-CCCCcc-----ccccccccccccc
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGG-SYERFL-----GMFSFGHMNSKEK 78 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~-~~~~lg-----iASsFGK~~~~~~ 78 (182)
+++|+|||||+|||||||||++||||++||+|+++||++||+++|||+|+||||+ +|+.+| |||||||+....+
T Consensus 233 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~ 312 (876)
T PLN02902 233 DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENK 312 (876)
T ss_pred CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCccccccc
Confidence 4599999999999999999999999999999999999999999999999999997 888876 9999999976443
Q ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhh
Q psy6720 79 -RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIG 157 (182)
Q Consensus 79 -~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~g 157 (182)
.+++++||+|+|||.||+|||||+|+|+|++||++||||+|+|||+||++|++|++|++|||+++++|+|||||||+ |
T Consensus 313 ~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGyl-G 391 (876)
T PLN02902 313 ELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFL-G 391 (876)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchh-H
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hhHHhhcCC
Q psy6720 158 IFDHWTSHP 166 (182)
Q Consensus 158 a~~a~~~~~ 166 (182)
|+||+++..
T Consensus 392 AlGafl~~~ 400 (876)
T PLN02902 392 ALGAFMSYE 400 (876)
T ss_pred HHHHHhcCC
Confidence 888775543
No 5
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=4.9e-53 Score=427.07 Aligned_cols=162 Identities=34% Similarity=0.541 Sum_probs=148.9
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHH---HHhcCCCCCCcceeccccCCCCCCc----c---ccccccccc
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIE---LATSGDNTKVDKLVRDIYGGSYERF----L---GMFSFGHMN 74 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~---lA~~Gd~~~vDllV~DIyg~~~~~l----g---iASsFGK~~ 74 (182)
+++|+|||||+|||||||||++||||++||||+++ ||++||++||||+|+||||.+|..+ . |||||||+.
T Consensus 1234 ~~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~ 1313 (1452)
T PTZ00297 1234 DGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLG 1313 (1452)
T ss_pred CCcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhCCCccccceEEeeccCCCcccccCCCCcceeeeccCccc
Confidence 57999999999999999999999999999999998 7999999999999999999876543 2 999999995
Q ss_pred ccc-----------------------------------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy6720 75 SKE-----------------------------------------KRESVSREDLARATLVTITNNIGSIARMSAINENIN 113 (182)
Q Consensus 75 ~~~-----------------------------------------~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~ 113 (182)
... .++++++||||+|||.||+|||||+|+|+|+.||++
T Consensus 1314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~ 1393 (1452)
T PTZ00297 1314 TERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVP 1393 (1452)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 310 023478999999999999999999999999999999
Q ss_pred EEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHhhcCCC
Q psy6720 114 KVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPA 167 (182)
Q Consensus 114 ~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~~~~~~ 167 (182)
||||+|+|+|+||++|++|++|++|||+|+++|+|||||||+ ||+||+...+.
T Consensus 1394 ~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~-ga~Ga~~~~~~ 1446 (1452)
T PTZ00297 1394 NIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYL-GALGCATLDPD 1446 (1452)
T ss_pred EEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCcccc-HHhhhhhcCCC
Confidence 999999999999999999999999999999999999999999 99999988654
No 6
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=100.00 E-value=8.7e-52 Score=359.36 Aligned_cols=158 Identities=49% Similarity=0.699 Sum_probs=149.0
Q ss_pred CcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccc
Q psy6720 2 KIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSK 76 (182)
Q Consensus 2 ~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~ 76 (182)
||...+|+||+||+|||||||||++|||++.||+|+++||++||++++||+|+||||++|+..+ |||||||+..+
T Consensus 116 ~v~~~~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~ 195 (279)
T TIGR00555 116 YVDGDNYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSK 195 (279)
T ss_pred EEcCccEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhcc
Confidence 4556699999999999999999999999999999999999999999999999999999998776 99999999875
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhh
Q psy6720 77 EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCII 156 (182)
Q Consensus 77 ~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ 156 (182)
..++.+++||+|+||++||++||||+|+++|++++++||+|+|++++.||.+|++++++++||+ .+++||||+||+
T Consensus 196 ~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~---~~~ifp~h~~y~- 271 (279)
T TIGR00555 196 HLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS---KKALFLEHEGYS- 271 (279)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC---ceEEEECCcchH-
Confidence 4467899999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred hhhHHhh
Q psy6720 157 GIFDHWT 163 (182)
Q Consensus 157 ga~~a~~ 163 (182)
||++|..
T Consensus 272 gAlGAaL 278 (279)
T TIGR00555 272 GAIGALL 278 (279)
T ss_pred HHhhhcc
Confidence 8877764
No 7
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=100.00 E-value=9.8e-51 Score=348.22 Aligned_cols=159 Identities=38% Similarity=0.518 Sum_probs=151.4
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccccc-
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEK- 78 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~- 78 (182)
+++|+|||||++||||+|||.+|||+..||||++++|+.||++.|||+|+||||.+|++.| |||||||+.....
T Consensus 164 psqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~glks~~iAssFGkVf~~r~k 243 (342)
T COG5146 164 PSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIASSFGKVFHHRDK 243 (342)
T ss_pred cchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCCCchhhHHHHHHHHHhhcC
Confidence 6889999999999999999999999999999999999999999999999999999998887 9999999976432
Q ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhh
Q psy6720 79 -RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIG 157 (182)
Q Consensus 79 -~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~g 157 (182)
.+++.+.|+.+|||..|++||||+||++|+.+++++|||.|+|.|+|-.+|.+++||+.|||+..++|+|+|||||+ |
T Consensus 244 ~le~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegyl-G 322 (342)
T COG5146 244 PLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYL-G 322 (342)
T ss_pred chhhcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhhhhhHHHHHhhcCcccceeeeeccchh-h
Confidence 26799999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hhHHhhc
Q psy6720 158 IFDHWTS 164 (182)
Q Consensus 158 a~~a~~~ 164 (182)
|++|+..
T Consensus 323 a~GAf~~ 329 (342)
T COG5146 323 AIGAFYL 329 (342)
T ss_pred HHHHHhh
Confidence 8888765
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=100.00 E-value=5e-40 Score=284.90 Aligned_cols=157 Identities=27% Similarity=0.396 Sum_probs=145.0
Q ss_pred CcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---ccccccccccccc
Q psy6720 2 KIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEK 78 (182)
Q Consensus 2 ~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~ 78 (182)
+|.+++++|++||++||||+|||++||++..||+|+++||++||++++||+|+|||+.++++++ +||+|||+... .
T Consensus 111 ~~~g~~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l-~ 189 (277)
T PRK13317 111 YVDGNSQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHH-L 189 (277)
T ss_pred EEeCCceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhh-h
Confidence 3567799999999999999999999999999999999999999999999999999999888776 99999997543 2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720 79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI 158 (182)
Q Consensus 79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga 158 (182)
.+.+++||||+||+.||+++|+++|+++|+.+++++|+|+|+.++.||.+++.++ ++|+..+.+++|++|++|+ ||
T Consensus 190 ~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~---~~l~~~~~~~~~p~~~~~~-gA 265 (277)
T PRK13317 190 DSEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIE---SYTKLRNCTPIFLENGGYS-GA 265 (277)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHH---HHHhcCCceEEecCCCchh-HH
Confidence 4678999999999999999999999999999999999999999999999999999 7999999999999999999 77
Q ss_pred hHHhh
Q psy6720 159 FDHWT 163 (182)
Q Consensus 159 ~~a~~ 163 (182)
++|..
T Consensus 266 lGAaL 270 (277)
T PRK13317 266 IGALL 270 (277)
T ss_pred HHHHH
Confidence 76643
No 9
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.78 E-value=8.7e-08 Score=87.83 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=99.4
Q ss_pred Eeccccc--chhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccccccccCCCHHHH
Q psy6720 10 CVLLTSL--GGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDL 87 (182)
Q Consensus 10 rvgGs~i--GGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~~~~~~~eDi 87 (182)
+.+++.. +|+++..++++| .-+++|+.++|.+++.+++|+...++-=.. +++-.+.++| .++|||
T Consensus 267 ~MNdkCAAGTGrFLE~~A~~L--gi~ieEl~~lA~~~~~~pv~IsS~CtVFae-SevIsll~~G----------~~~eDI 333 (404)
T TIGR03286 267 TMGGICAGASGRFLEMTAKRL--GVDITELGKLALKGMPEKVRMNSYCIVFGI-QDLVTALAEG----------ASPEDV 333 (404)
T ss_pred EEcCcccccCcHHHHHHHHHh--CCCHHHHHHHHHhCCCCCCCccCccccccc-HhHHHHHHCC----------CCHHHH
Confidence 6777777 889999999999 569999999999999889998876652111 1121444544 689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHh
Q psy6720 88 ARATLVTITNNIGSIARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHW 162 (182)
Q Consensus 88 a~SLl~Mv~~nIg~la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~ 162 (182)
+++|.++|++++.. ..++..++++ |+|+|.. ..|+-..+.++. .. +.+.++++|.+|. ||+||-
T Consensus 334 aAGl~~SIa~rv~~---~l~~~~~i~~~VvftGGv-a~N~gvv~ale~---~L---g~~iivPe~pq~~-GAiGAA 398 (404)
T TIGR03286 334 AAAACHSVAEQVYE---QQLQEIDVREPVILVGGT-SLIEGLVKALGD---LL---GIEVVVPEYSQYI-GAVGAA 398 (404)
T ss_pred HHHHHHHHHHHHHH---HHhhcCCCCCcEEEECCh-hhhHHHHHHHHH---Hh---CCcEEECCcccHH-HHHHHH
Confidence 99999999999876 5567778886 9999995 566666666663 33 6789999999999 777763
No 10
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.48 E-value=0.0021 Score=54.34 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=81.4
Q ss_pred ccchhhHH-HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-cccccccccccc-cccCCCHHHHHHHH
Q psy6720 15 SLGGGTFL-GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-GMFSFGHMNSKE-KRESVSREDLARAT 91 (182)
Q Consensus 15 ~iGGGT~~-GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-iASsFGK~~~~~-~~~~~~~eDia~SL 91 (182)
+.|+|.|+ -+++.| | -+++|+-+++.++.. .++++ +.+-|.+-.... ..+..+++|+++++
T Consensus 123 a~Gtg~f~e~~a~~l-~-~~~~e~~~~~~~~~~--------------~~~~~~~c~vf~~s~vi~~l~~g~~~~di~~~~ 186 (248)
T TIGR00241 123 AAGTGRFLEVTARRL-G-VSVEELGSLAEKADR--------------KAKISSMCTVFAESELISLLAAGVKKEDILAGV 186 (248)
T ss_pred cccccHHHHHHHHHc-C-CCHHHHHHHHhcCCC--------------CCCcCCEeEEEechhHHHHHHCCCCHHHHHHHH
Confidence 45666443 444444 5 589999999888753 12232 344455422110 12347899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC-EEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHh
Q psy6720 92 LVTITNNIGSIARMSAINENIN-KVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHW 162 (182)
Q Consensus 92 l~Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~ 162 (182)
...++++|..++ +..+++ +|+++|.. ..|+..++.++. +. +.+.+.++|..+. ||+||-
T Consensus 187 ~~~va~~i~~~~----~~~~~~~~Vvl~GGv-a~n~~l~~~l~~---~l---g~~v~~~~~~~~~-~AlGaA 246 (248)
T TIGR00241 187 YESIAERVAEML----QRLKIEAPIVFTGGV-SKNKGLVKALEK---KL---GMKVITPPEPQIV-GAVGAA 246 (248)
T ss_pred HHHHHHHHHHHH----hhcCCCCCEEEECcc-ccCHHHHHHHHH---Hh---CCcEEcCCCccHH-HHHHHH
Confidence 999999999754 445677 99999996 557878888884 44 5677788888887 777763
No 11
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.38 E-value=0.047 Score=50.82 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=84.2
Q ss_pred ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-ccccccccccc-ccccCCCHHHHHHHHH
Q psy6720 15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-GMFSFGHMNSK-EKRESVSREDLARATL 92 (182)
Q Consensus 15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-iASsFGK~~~~-~~~~~~~~eDia~SLl 92 (182)
+-|-|.|+--..-.++. +.+|+-++|.+.++ .+. ++ ..+-|.+-... ...+-+++|||+++|.
T Consensus 300 AAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~~-pv~-------------ISS~CtVFAESEVIslla~G~~reDIaAGL~ 364 (432)
T TIGR02259 300 AAGCGRYLGYIADEMNM-GLHELGPLAMKSSK-PAR-------------INSTCTVFAGAELRDRLALGDKREDILAGLH 364 (432)
T ss_pred cccchHHHHHHHHHcCC-CHHHHHHHHhcCCC-CCC-------------cCCcceEEehHHHHHHHHCCCCHHHHHHHHH
Confidence 44667777666666675 89999999988752 221 21 22444442110 1135689999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CEEEEEcccccccHHHHHHHHHHHHHHhc--CCceEEEecCCchhhhhhHHh
Q psy6720 93 VTITNNIGSIARMSAINENI-NKVVFVGNFLRVNPISMKLLAYAMDYWSK--GTQKALFLEHEVCIIGIFDHW 162 (182)
Q Consensus 93 ~Mv~~nIg~la~l~A~~~~i-~~Ivf~G~~i~~~~~~m~~i~~ai~yws~--g~~~alFl~h~gyl~ga~~a~ 162 (182)
..|..++.++ ..+..++ ++|+|+|-. ..|+-..+.++ +.+.. ++.+.+.++|..|. ||+||-
T Consensus 365 ~SIA~Rv~s~---l~r~~~i~~~VvftGGv-A~N~gvv~aLe---~~L~~~~~~~~V~Vp~~pq~~-GALGAA 429 (432)
T TIGR02259 365 RAIILRAISI---ISRSGGITDQFTFTGGV-AKNEAAVKELR---KLIKENYGEVQINIDPDSIYT-GALGAS 429 (432)
T ss_pred HHHHHHHHHH---HhcccCCCCCEEEECCc-cccHHHHHHHH---HHHccccCCCeEecCCCccHH-HHHHHH
Confidence 9999977655 4444344 489999996 66777778887 45532 35677788999998 888763
No 12
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.22 E-value=0.064 Score=46.98 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=77.7
Q ss_pred ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHH
Q psy6720 15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLV 93 (182)
Q Consensus 15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~ 93 (182)
+-|-|.|+--..-.++. +.+|+-++|.+.+ +.+++ -+ .-+-|.+-... ...+-.++|||+++|..
T Consensus 130 AAGTG~FLe~~A~~L~i-~leel~~~a~~~~-~~~~i-----ss-------~CtVFaeSevi~~~~~G~~~edI~aGl~~ 195 (262)
T TIGR02261 130 ASGSGQFLENIARYLGI-AQDEIGSLSQQAD-NPEKV-----SG-------ICAVLAETDVINMVSRGISAPNILKGIHE 195 (262)
T ss_pred cccccHHHHHHHHHhCC-CHHHHHHHHhcCC-CCCCc-----CC-------CceEEchhhHHHHHHCCCCHHHHHHHHHH
Confidence 44667777766666564 7899999987774 22221 11 22444442110 11356899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCC-EEEEEcccccccHHHHHHHHHHHHHHhcCC--ceEEEecCCchhhhhhHHh
Q psy6720 94 TITNNIGSIARMSAINENIN-KVVFVGNFLRVNPISMKLLAYAMDYWSKGT--QKALFLEHEVCIIGIFDHW 162 (182)
Q Consensus 94 Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~--~~alFl~h~gyl~ga~~a~ 162 (182)
.|+.++..+ ..+....+ +|+|+|-. ..|+-..+.++. .....+ +...-++|..|. ||++|-
T Consensus 196 sia~r~~~~---~~~~~~~~~~v~~~GGv-a~n~~~~~~le~---~l~~~~~~~~v~~~~~~q~~-gAlGAA 259 (262)
T TIGR02261 196 SMADRLAKL---LKSLGALDGTVLCTGGL-ALDAGLLEALKD---AIQEAKMAVAAENHPDAIYA-GAIGAA 259 (262)
T ss_pred HHHHHHHHH---HhccCCCCCcEEEECcc-cccHHHHHHHHH---HhccCCcceEecCCCcchHH-HHHHHH
Confidence 999987533 33443444 69999995 777777677773 332222 223345566777 887763
No 13
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.77 E-value=0.15 Score=45.34 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHH
Q psy6720 15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLV 93 (182)
Q Consensus 15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~ 93 (182)
+-|-|.|+=-..-.++. +.+|+-++|.+.+.+.+++- + .-+=|.+-... ...+-+++|||+++|..
T Consensus 158 AAGTGrFLE~~A~~Lgi-~leel~~~a~~~~~~p~~Is-----s-------~CtVFAeSevi~l~~~G~~~edI~aGl~~ 224 (293)
T TIGR03192 158 AAGTGRGMEVISDLMQI-PIADLGPRSFDVETEPEAVS-----S-------ICVVFAKSEALGLLKAGYTKNMVIAAYCQ 224 (293)
T ss_pred cccccHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCCcC-----C-------cceEeccHhHHHHHHCCCCHHHHHHHHHH
Confidence 44667776666555574 78999888865542222221 1 23444442110 11356899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEE-EecCCchhhhhhHH
Q psy6720 94 TITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKAL-FLEHEVCIIGIFDH 161 (182)
Q Consensus 94 Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~al-Fl~h~gyl~ga~~a 161 (182)
.|+.++.. +..+..--++|+|+|-. ..|+-..+.++. .. +.+.. .++|..|. ||+||
T Consensus 225 sia~rv~~---~~~~~~i~~~v~~~GGv-a~N~~l~~al~~---~L---g~~v~~~p~~p~~~-GAlGA 282 (293)
T TIGR03192 225 AMAERVVS---LLERIGVEEGFFITGGI-AKNPGVVKRIER---IL---GIKAVDTKIDSQIA-GALGA 282 (293)
T ss_pred HHHHHHHH---HhcccCCCCCEEEECcc-cccHHHHHHHHH---Hh---CCCceeCCCCccHH-HHHHH
Confidence 99998633 33443333469999995 667777777773 33 33333 36677888 77665
No 14
>PRK09604 UGMP family protein; Validated
Probab=95.72 E-value=0.15 Score=45.38 Aligned_cols=139 Identities=12% Similarity=0.000 Sum_probs=86.0
Q ss_pred CCCCceEeccc-ccchhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCcceec-cccCCCCCCcc--cccccccccccc
Q psy6720 4 PNLSPLCVLLT-SLGGGTFLGLCCLLTGCNSFEE--AIELATSGDNTKVDKLVR-DIYGGSYERFL--GMFSFGHMNSKE 77 (182)
Q Consensus 4 ~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~f~e--i~~lA~~Gd~~~vDllV~-DIyg~~~~~lg--iASsFGK~~~~~ 77 (182)
..++++.++.| ...=|-++.-+-..+|...+.+ +..||..|+...+++... +.-+.+..-.| ++.. ++..
T Consensus 146 ~~~~~~~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~sfsg~~~~~~--~~~~-- 221 (332)
T PRK09604 146 GIGDYELLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPMDRPGLDFSFSGLKTAVL--NTIE-- 221 (332)
T ss_pred CCCcEEEccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccccCCCccEecCcHHHHHH--HHHH--
Confidence 35677777765 2455666666666667664444 999999998654443211 11111111111 1111 1111
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720 78 KRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH 151 (182)
Q Consensus 78 ~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h 151 (182)
..+.+++|+|+++...+.+.+..++..+.+.+++++|+++|....| ..+.+.|. +...+..++.++.+.
T Consensus 222 -~~~~~~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N-~~L~~~l~---~~~~~~g~~v~~~~~ 290 (332)
T PRK09604 222 -KSEQTKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAAN-SGLRERLA---ELAKKRGIEVFIPPL 290 (332)
T ss_pred -hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHH-HHHHHHHH---HHHHHCCCEEECCCC
Confidence 0134579999999999999999999999999999999999997554 44445555 233445666555443
No 15
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=95.53 E-value=0.12 Score=45.69 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=84.7
Q ss_pred CCCCceEeccc-ccchhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCcceecccc---CCCCCCccccccccccccc-
Q psy6720 4 PNLSPLCVLLT-SLGGGTFLGLCCLLTGCNSFEE--AIELATSGDNTKVDKLVRDIY---GGSYERFLGMFSFGHMNSK- 76 (182)
Q Consensus 4 ~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~f~e--i~~lA~~Gd~~~vDllV~DIy---g~~~~~lgiASsFGK~~~~- 76 (182)
..+++++++.| ...=|-+.--+..++|...+++ ++.||..|+....++.. .+. +.++.-.|+-+..-+....
T Consensus 145 ~~~~~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~-~~~~~~~~~~sfsg~~~~~~~~~~~~ 223 (314)
T TIGR03723 145 GVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPR-PMTGRPGLDFSFSGLKTAVLNLIEKL 223 (314)
T ss_pred cCCeEEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECCh-hhccCCCCCEecccHHHHHHHHHHhc
Confidence 35667777665 2334555555555567654444 99999999865454321 111 1111111111000011000
Q ss_pred -ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720 77 -EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH 151 (182)
Q Consensus 77 -~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h 151 (182)
.++++..++|+|+++...+.+.+..++..+.+.+++++|+++|.-..|.- +.+.+. +......++.++.+.
T Consensus 224 ~~~~~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~-l~~~l~---~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 224 KQKGEELDKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSR-LRERLE---ELAEKAGLEVFIPPL 295 (314)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHH-HHHHHH---HHHHHCCCEEECCCC
Confidence 00112357899999999999999999999999999999999999755544 445555 344445676655443
No 16
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=95.26 E-value=0.13 Score=45.51 Aligned_cols=137 Identities=15% Similarity=0.019 Sum_probs=78.9
Q ss_pred CcCCCCceEeccc-ccchhhHHHHHHhhcCCCC---HHHHHHHHhcCCCC-CCcceeccccCCCCCCccccccccccccc
Q psy6720 2 KIPNLSPLCVLLT-SLGGGTFLGLCCLLTGCNS---FEEAIELATSGDNT-KVDKLVRDIYGGSYERFLGMFSFGHMNSK 76 (182)
Q Consensus 2 ~~~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~---f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lgiASsFGK~~~~ 76 (182)
++..++++.++.| -.+=|-++--+..++|... . ++-++|.+|+.. +++.-+.+ .. +..+.-+..+...
T Consensus 136 ~~~~~~~~~l~~t~d~s~GrlfDava~~LGl~~~G~~-~le~la~~~~~~~~~~~~~~~---~~---~~fs~l~~~~~~~ 208 (322)
T TIGR03722 136 AYRNGRYRVFGETLDIGLGNALDKFAREVGLGHPGGP-KIEELAEKGKEYIELPYTVKG---MD---LSFSGLLTAALRA 208 (322)
T ss_pred EEeCCeEEEEEEeccccchHHHHHHHHHhCCCCCChH-HHHHHHhcCCCcccCCccCCC---Cc---CchHHHHHHHHHH
Confidence 3445678888776 2344444444444445443 3 455577777432 22211111 01 1000001111110
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 77 EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 77 ~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
- +...+++|+|+++...+.+.+..++..+++.+++++|+++|-... |..+.+.|. +...+..++.++.+
T Consensus 209 ~-~~~~~~~diAasfq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~-N~~L~~~l~---~~l~~~g~~v~~~~ 277 (322)
T TIGR03722 209 Y-KKGARLEDVCYSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAA-NRRLREMLE---LMAEDRGAKFYVPP 277 (322)
T ss_pred H-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHH-HHHHHHHHH---HHHHHCCCEEEcCC
Confidence 0 112457999999999999999999999999999999999999755 555555555 34445567654433
No 17
>PRK14878 UGMP family protein; Provisional
Probab=95.04 E-value=0.17 Score=44.82 Aligned_cols=134 Identities=14% Similarity=0.083 Sum_probs=80.3
Q ss_pred CcCCCCceEeccc-ccchhhHHHHHHhhcCCC---CHHHHHHHHhcCCCC-CCcceeccccCCCCCCcccccccccccc-
Q psy6720 2 KIPNLSPLCVLLT-SLGGGTFLGLCCLLTGCN---SFEEAIELATSGDNT-KVDKLVRDIYGGSYERFLGMFSFGHMNS- 75 (182)
Q Consensus 2 ~~~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~---~f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lgiASsFGK~~~- 75 (182)
++..++|+.++.| -.+-|=++--+..++|.. ... +-++|.+++.. +++.-+. +.+ -+|-.+..
T Consensus 135 ~~~~~~~~~~~~t~d~s~Gr~fD~vA~~LGl~~~G~~~-lE~~a~~~~~~~~~p~~~~---~~~-------~~fsgl~~~ 203 (323)
T PRK14878 135 AFRGGRYRVFGETLDIAIGNALDTFAREVGLAPPGGPA-IEKCAEKGEKYIELPYVVK---GQD-------LSFSGLLTA 203 (323)
T ss_pred EEeCCeEEEeeeecCcchhHHHHHHHHHcCCCCCChhH-HHHHHhhCCCcCcCCccCc---CCC-------CcchHHHHH
Confidence 4556778888876 355555554444444544 222 44557766432 2222221 111 12211100
Q ss_pred --cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 76 --KEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 76 --~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
....+..+++|||+++...+.+.+..++..+++.+++++|+++|-... |..+++.+.. ...+.+++.+|.+
T Consensus 204 v~~~i~~~~~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~-N~~L~~~l~~---~~~~~g~~v~~~~ 276 (323)
T PRK14878 204 ALRLYKGKERLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAA-NRRLREKLEI---MAEDRGAKFYVVP 276 (323)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHH-HHHHHHHHHH---HHHHCCCEEECCC
Confidence 000122457999999999999999999999999999999999999754 5555565553 3344567765544
No 18
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=92.66 E-value=0.95 Score=41.92 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=75.2
Q ss_pred HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHHHHHHHHHH
Q psy6720 23 GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLVTITNNIGS 101 (182)
Q Consensus 23 GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~Mv~~nIg~ 101 (182)
=.++.| | -+.+|+-++|.+++.. +++- + ..+=|+.-.-. ...+-+++|||+++|...|.+|+..
T Consensus 270 ~~A~~L-g-v~v~E~~~~A~~~~~~-v~i~-----S-------~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 270 VIARRL-G-VDVEELGKLALKATPP-VKIN-----S-------RCAVFAESEVISALAEGASPEDILAGLAYSVAENVAE 334 (396)
T ss_pred HHHHHh-C-CCHHHHHHHHhcCCCC-cccC-----C-------eeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344444 3 5899999999999854 3322 1 12333321100 1135689999999999999988754
Q ss_pred HHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHH
Q psy6720 102 IARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDH 161 (182)
Q Consensus 102 la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a 161 (182)
...+.-+++. ||+.|.. ..|.-..+.++ ++. +.+.+-+.|.++. ||+||
T Consensus 335 ---~~~~~~~i~~~iv~~GGv-a~n~av~~ale---~~l---g~~V~vP~~~ql~-GAiGA 384 (396)
T COG1924 335 ---KVIKRVDIEEPIVLQGGV-ALNKAVVRALE---DLL---GRKVIVPPYAQLM-GAIGA 384 (396)
T ss_pred ---HHhhccCCCCCEEEECcc-hhhHHHHHHHH---HHh---CCeeecCCccchh-hHHHH
Confidence 2456777777 9999997 55555556555 444 5788889999998 77766
No 19
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=1 Score=41.07 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=81.2
Q ss_pred CCceEeccc---ccchhhHHHHHHhh-cCCCCHHHHHHHHhcCCCCCCcceeccccC----CCCCCcccccccccccccc
Q psy6720 6 LSPLCVLLT---SLGGGTFLGLCCLL-TGCNSFEEAIELATSGDNTKVDKLVRDIYG----GSYERFLGMFSFGHMNSKE 77 (182)
Q Consensus 6 ~~~~rvgGs---~iGGGT~~GL~~LL-tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg----~~~~~lgiASsFGK~~~~~ 77 (182)
++|+.+|-| ++|. .|=-.+|+| ++.--=-+|-++|++|+..++.+--.=+-+ -+++.+-||.- =.+...+
T Consensus 147 g~y~ilGeTlDdA~Ge-a~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~-~~~~~~~ 224 (342)
T COG0533 147 GRYEVLGETLDDAAGE-AFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVL-RLLKKLK 224 (342)
T ss_pred CcEEEEeeechhhhhH-HHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHH-HHHHhcc
Confidence 667766666 3443 333444444 122222289999999997655443110011 11111112211 0011101
Q ss_pred cccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 78 KRES---VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 78 ~~~~---~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
++++ ..++|||+|+...+...+.+..-.+.+.++.++++..|.- .-|..+.+.++.... ...++.+|+.
T Consensus 225 ~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGV-aaN~~LR~~l~~~~~---~~g~~~~~p~ 296 (342)
T COG0533 225 QKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGV-AANSRLREMLEEMCK---ERGAEVYIPP 296 (342)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccH-HHhHHHHHHHHHHHH---hcCCEEEcCC
Confidence 0122 3466699999999999999999999999999999999996 556666676665444 3356655544
No 20
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=91.87 E-value=5.6 Score=36.23 Aligned_cols=122 Identities=18% Similarity=0.103 Sum_probs=76.5
Q ss_pred CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcce-eccccCCCCCCcc---cccccccccccccccC
Q psy6720 6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKL-VRDIYGGSYERFL---GMFSFGHMNSKEKRES 81 (182)
Q Consensus 6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDll-V~DIyg~~~~~lg---iASsFGK~~~~~~~~~ 81 (182)
+.|.-.+++.-||..+-=+.+.+ +..+++++.+++++-....-.++ +-...|...|... -++-+| + ..+
T Consensus 286 ~~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~g-l-----~~~ 358 (481)
T TIGR01312 286 GGWLPMGVTLSATSSLEWFRELF-GKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIG-L-----THN 358 (481)
T ss_pred CceEEEeEehhhHHHHHHHHHHh-CCCcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEEC-C-----CCC
Confidence 44544455555555554455544 43578888888875543322333 3334444433221 223233 2 235
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
.++++++++++.-|++++-++.-..-+. ..+++|+.+|.. ..++..++.++.+
T Consensus 359 ~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~-s~s~~~~Q~~Adv 413 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGG-AKSPAWRQMLADI 413 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccc-cCCHHHHHHHHHH
Confidence 6899999999999999998877655443 346899999997 6778888998855
No 21
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=91.51 E-value=0.96 Score=39.72 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEe
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFL 149 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl 149 (182)
.+++|+|+++...+.+.+..++..+.+.+++++|+++|....|.-.. +.+.. .....+++.++.
T Consensus 229 ~~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~-~~l~~---~~~~~g~~v~~~ 292 (305)
T TIGR00329 229 ATKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLR-EMLET---LCQELNVEFYYP 292 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHH-HHHHH---HHHHCCCEEECC
Confidence 45799999999999999999999999999999999999986655444 44442 333346666553
No 22
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=91.47 E-value=1 Score=40.87 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
.++|||+|+...|...+.+....+.+.+++++++++|-. ..|..+.+.++... .+.+++.+|+.
T Consensus 235 ~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGV-AaN~~LR~~l~~~~---~~~~~~~~~p~ 298 (345)
T PTZ00340 235 FTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGV-GCNLRLQEMMQQMA---KERGGKLFAMD 298 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCH-HHHHHHHHHHHHHH---HHcCCEEEeCC
Confidence 478999999999999999999999999999999999996 55666777777433 34578876654
No 23
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=1.4 Score=43.78 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720 81 SVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH 151 (182)
Q Consensus 81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h 151 (182)
...++++|...-+.+++-++.++...|+..|+++|+++|..+.|..++ +.+. ++..+.+.+.+|.++
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~l~-~~~~---~~l~~~~f~~~~~~~ 729 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRLLL-ERLA---KYLKKEGFRFLFHQE 729 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHHHH-HHHH---HHHHhcCceEeeecc
Confidence 478899999999999999999999999999999999999987766655 4444 577777888777554
No 24
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=89.86 E-value=10 Score=35.24 Aligned_cols=121 Identities=16% Similarity=0.041 Sum_probs=74.8
Q ss_pred CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcce-eccccCCCCCCcc---cccccccccccccccCC
Q psy6720 7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKL-VRDIYGGSYERFL---GMFSFGHMNSKEKRESV 82 (182)
Q Consensus 7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDll-V~DIyg~~~~~lg---iASsFGK~~~~~~~~~~ 82 (182)
.|.-.+++..||..+-=+.+.+.-..+++++.++|++-. ..-.++ +-...|...|... -++-+|- +...
T Consensus 303 ~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl------~~~~ 375 (504)
T PTZ00294 303 VYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK-DTGGVVFVPAFSGLFAPYWRPDARGTIVGM------TLKT 375 (504)
T ss_pred EEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCCCEEEeCcccCCCCCCCCCCCCEEEEcc------CCCC
Confidence 344455566666666555555532346888888886543 222333 3333443333221 3333342 2245
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEEcccccccHHHHHHHHHH
Q psy6720 83 SREDLARATLVTITNNIGSIARMSAINEN--INKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~--i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
+++|++++++.-|++.+-+.--...+..| +++|+.+|.. ..++..+++++.+
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~-a~s~~w~Qi~Adv 429 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGL-TKNKLLMQFQADI 429 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEeccc-ccCHHHHHHHHHH
Confidence 89999999999999998776655544324 7899999987 5678888998854
No 25
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=88.59 E-value=2.2 Score=42.17 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
.+++|||+++...+...+..++-.+++.+++++|+++|.... |..+.+.+.. ...+.+++.+|.+
T Consensus 629 ~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfq-N~~L~~~L~~---~L~~~g~~v~~p~ 693 (711)
T TIGR00143 629 EDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFY-NRLLLERLAK---YLKGLGFQFLFHR 693 (711)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHH-HHHHHHHHHH---HHHhCCCEEEccC
Confidence 578999999999999999999999999999999999999755 4555555553 3344567776644
No 26
>PRK15027 xylulokinase; Provisional
Probab=87.75 E-value=16 Score=33.77 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=73.8
Q ss_pred CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccC
Q psy6720 6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRES 81 (182)
Q Consensus 6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~ 81 (182)
+.|.-.+++.-+|..+- -.+-..+..+++++.++|++-....-. +.+-.+.|...|... .++-||- ...
T Consensus 283 ~~~~~~~~~~~~g~~~~-W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl------~~~ 355 (484)
T PRK15027 283 QRWHLMSVMLSAASCLD-WAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGL------THQ 355 (484)
T ss_pred CceEEEEEehhhHHHHH-HHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECC------CCC
Confidence 33443444444444433 333334556688888888653322212 344555555433221 4445542 234
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
.+++|++++++.=|++++-+.--..-+ ...+++|+++|.- ..++..+++++.+
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv 409 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGG-ARSEYWRQMLADI 409 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcc-cCCHHHHHHHHHH
Confidence 689999999999999988776644432 2236799999995 7788888998844
No 27
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=87.38 E-value=18 Score=33.63 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHhcCCCCCCccee-ccccCCCCCCcc---cccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6720 31 CNSFEEAIELATSGDNTKVDKLV-RDIYGGSYERFL---GMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMS 106 (182)
Q Consensus 31 ~~~f~ei~~lA~~Gd~~~vDllV-~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~ 106 (182)
..+++++.++|++-....-.+++ --+.|...|... -++-|| +. ..-+++|++++++.=|++.+-+.--..
T Consensus 321 ~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~G-l~-----~~~~~~~l~rAvlEgia~~~~~~~~~~ 394 (505)
T TIGR01314 321 IDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFG-LT-----YSHKKEHMIRAALEGVIYNLYTVALAL 394 (505)
T ss_pred CCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEEC-CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888654432223333 333344333221 334444 21 235799999999999999887764444
Q ss_pred HHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 107 AIN--ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 107 A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
.+. ..+++|+.+|.- ..++..+++++.+
T Consensus 395 ~~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv 424 (505)
T TIGR01314 395 VEVMGDPLNMIQATGGF-ASSEVWRQMMSDI 424 (505)
T ss_pred HHhcCCCCcEEEEecCc-ccCHHHHHHHHHH
Confidence 332 347899999996 5678888998854
No 28
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.89 E-value=3.1 Score=38.90 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720 83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE 150 (182)
Q Consensus 83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~ 150 (182)
+.+|+|+++...+.+.+..++..+.+.+++++|+++|-...| ..+.+.+.. ...+..++.+|.+
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N-~~l~~~l~~---~~~~~~~~v~~~~ 280 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAAN-NRLREMLKE---MCEERGADFYVPE 280 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHH-HHHHHHHHH---HHHHCCCEEECCC
Confidence 568999999999999999999999999999999999997554 445555552 3334566665544
No 29
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=86.16 E-value=16 Score=34.11 Aligned_cols=146 Identities=18% Similarity=0.046 Sum_probs=89.1
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCC--CCCCcceeccccCC-CCCCcc-c--cccccccccccc
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGD--NTKVDKLVRDIYGG-SYERFL-G--MFSFGHMNSKEK 78 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd--~~~vDllV~DIyg~-~~~~lg-i--ASsFGK~~~~~~ 78 (182)
++.+.+.+++..||..+..+.+..-...++.++...+..=. ....+++...-..+ ..+... - +..+|.
T Consensus 293 ~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~------ 366 (502)
T COG1070 293 PGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGL------ 366 (502)
T ss_pred CCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEcc------
Confidence 45567888999999999999888766556666666554333 22234443332222 212111 1 122221
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec--CCch
Q psy6720 79 RESVSREDLARATLVTITNNIGSIARMSAI--NENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE--HEVC 154 (182)
Q Consensus 79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~--~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~--h~gy 154 (182)
....++++++++++.-++.++-..--...+ ....++|+++|.. ..++..+++++.+ . +....-++ ..+.
T Consensus 367 ~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg-ars~~w~Qi~Ad~---~---g~~v~~~~~~e~~a 439 (502)
T COG1070 367 TLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG-ARSPLWLQILADA---L---GLPVVVPEVEEAGA 439 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc-ccCHHHHHHHHHH---c---CCeeEecCcccchH
Confidence 234689999999999999999874333333 5677899999998 5568888998854 2 34433332 3444
Q ss_pred hhhhhHHhh
Q psy6720 155 IIGIFDHWT 163 (182)
Q Consensus 155 l~ga~~a~~ 163 (182)
+.||..+..
T Consensus 440 ~g~A~~~~~ 448 (502)
T COG1070 440 LGGAALAAA 448 (502)
T ss_pred HHHHHHHHH
Confidence 555554433
No 30
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=83.42 E-value=27 Score=32.29 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=72.8
Q ss_pred ecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccCCCHHH
Q psy6720 11 VLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSRED 86 (182)
Q Consensus 11 vgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~eD 86 (182)
-+++..||+.+-=+-..+....+++++.++|++=. ..-. +.+-.+.|...|... -++-+| + ....+++|
T Consensus 300 ~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~g~~~~P~l~G~r~P~~~~~arg~~~G-l-----~~~~~~~~ 372 (493)
T TIGR01311 300 EGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DNGGVYFVPAFTGLGAPYWDPDARGAIFG-L-----TRGTTKAH 372 (493)
T ss_pred EeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CCCCEEEeCcccCCCCCcCCCCCcEEEEC-c-----CCCCCHHH
Confidence 34455555554333333432356778888775422 1112 334455555433322 334444 2 23458999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 87 LARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 87 ia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
++++++.=|++++-+..-..-+. ..+++|..+|.. ..++..+++++.+
T Consensus 373 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv 422 (493)
T TIGR01311 373 IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGM-TNNNLLMQFQADI 422 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeccc-ccCHHHHHHHHHh
Confidence 99999999999988877666543 347899999996 6788899999954
No 31
>PLN02295 glycerol kinase
Probab=79.99 E-value=44 Score=31.19 Aligned_cols=123 Identities=18% Similarity=0.108 Sum_probs=76.0
Q ss_pred CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCC-CCcceeccccCCCCCCcc---ccccccccccccccc
Q psy6720 5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNT-KVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRE 80 (182)
Q Consensus 5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~ 80 (182)
++.|...+++..+|..+-=+.+.+....+++|+.++|++=.-. .+ +.+-...|..-|... -++-+| + +.
T Consensus 302 ~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl-~f~P~l~G~r~P~~~~~arg~~~G-l-----~~ 374 (512)
T PLN02295 302 PTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGV-YFVPAFSGLFAPRWRDDARGVCVG-I-----TR 374 (512)
T ss_pred CceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCce-EEeCcccCCCCCcCCCCCCEEEEC-C-----CC
Confidence 3456666777777776655555553224577787877542211 12 344444554333221 344444 2 23
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 81 SVSREDLARATLVTITNNIGSIARMSAIN-------ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~-------~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
..+++|++++++.=|++.+-++--..-+. ..+++|..+|.- ..++..+++++.+
T Consensus 375 ~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADv 435 (512)
T PLN02295 375 FTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGA-TANNLLMQIQADL 435 (512)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccc-hhCHHHHHHHHHh
Confidence 46899999999999999986655444332 147889999986 7788888998843
No 32
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=77.66 E-value=7.4 Score=35.62 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCC-----CCCCcccccccccc--cccccccCCCHHHHHHHHHHHH
Q psy6720 23 GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGG-----SYERFLGMFSFGHM--NSKEKRESVSREDLARATLVTI 95 (182)
Q Consensus 23 GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~-----~~~~lgiASsFGK~--~~~~~~~~~~~eDia~SLl~Mv 95 (182)
..++..++ .+||+==++|++|.... -++++.-.. +.|+-.----|+-. ...-.+...++||+.+.|....
T Consensus 194 ~~~~~~~~-~~yD~~G~~A~~G~v~~--~ll~~ll~~pyf~~~pPKStGrE~F~~~~l~~~l~~~~~~~~D~~aTlt~~T 270 (364)
T PF03702_consen 194 AWIQRHTG-LPYDKDGEWAASGKVNE--ELLDRLLSHPYFKRPPPKSTGREDFGLEWLQQILDKFSLSPEDILATLTEFT 270 (364)
T ss_dssp HHHHHHCS--SS-GGGHHHHCS---H--HHHHHHHTSHHHHS-SS----TTTSSHHHHHHHCTTSTT-HHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcCcCcHhhCcCCCCH--HHHHHHhcCccccCCCCCcCCccccCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 35566777 78888888999996321 223333332 23321101112210 0000011226999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHH
Q psy6720 96 TNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAY 134 (182)
Q Consensus 96 ~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ 134 (182)
+++|.+---... ...++|+++|-= ..|+.+|+.|+.
T Consensus 271 A~sI~~~i~~~~--~~~~~v~v~GGG-a~N~~L~~~L~~ 306 (364)
T PF03702_consen 271 AQSIADAIRRFP--PQPDEVYVCGGG-ARNPFLMERLQE 306 (364)
T ss_dssp HHHHHHHHHHH---TT-EEEEEESGG-GG-HHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCceEEEECCC-cCCHHHHHHHHh
Confidence 999986544332 337899999998 678999999994
No 33
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=77.59 E-value=22 Score=30.52 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhc----CCceEEEecCCchh
Q psy6720 86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK----GTQKALFLEHEVCI 155 (182)
Q Consensus 86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~----g~~~alFl~h~gyl 155 (182)
..|..++.-.+..+|+.........+-+.||+.|......+..++.+...++-+.. ...+...-+++...
T Consensus 226 ~~a~~i~~~~~~~L~~~i~~~~~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~ 299 (318)
T TIGR00744 226 PVAVDSYREVARWAGAGLADLASLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDA 299 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCch
Confidence 45677888888888888888888899999999999888778888888777664432 23444455555443
No 34
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=77.52 E-value=20 Score=30.98 Aligned_cols=128 Identities=15% Similarity=0.020 Sum_probs=72.6
Q ss_pred CCceEeccc--ccchhhHHHHHHhh-cCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccccccccCC
Q psy6720 6 LSPLCVLLT--SLGGGTFLGLCCLL-TGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESV 82 (182)
Q Consensus 6 ~~~~rvgGs--~iGGGT~~GL~~LL-tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~~~~~ 82 (182)
+.|+.+++| ..-|=.+.-..++| .....--++-++|.+| ...++-..-.. .++.-.|..+..-+. .
T Consensus 124 ~~~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~le~la~~~--~~~~~p~~~~~-~~~sFsG~~t~~~~~--------i 192 (268)
T PF00814_consen 124 GDYEILGETLDDAIGEAFDKVARLLGLPYPGGPALEKLASEG--EAFKFPRPLKN-CDFSFSGLKTAVYRL--------I 192 (268)
T ss_dssp TEEEEECCBSSSCHHHHHHHHHHHTT--SSHHHHHHHHHCT---S------SEET-TEEEEHHHHHHHHHH--------H
T ss_pred eEEEeeccccccccHHHHhhHHHHhccccccCcHHHHHHHhC--Ccceeccceee-eeEEEEcccHHHHHH--------h
Confidence 356666666 34556666677776 2222223566778877 33332211000 111111211111111 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEe
Q psy6720 83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFL 149 (182)
Q Consensus 83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl 149 (182)
.++|+|+++...+...+.+.+-.+.+..+++++++.|.- ..|..+++.+. +.-.. .++.+|+
T Consensus 193 ~~~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGV-aaN~~lr~~l~---~~~~~-~~~~~~p 254 (268)
T PF00814_consen 193 EKADIAASFQEAIADHLAKKAPRALEKPRAKSLVVSGGV-AANKYLREGLR---KLCSE-GIKLFFP 254 (268)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGG-GGHHHHHHHHH---HHHHH-TSEEE--
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHH-HHHHHHHHHHH---HHHHc-CCEEEcC
Confidence 229999999999999999999999999999999999996 55555556655 23334 6776654
No 35
>PRK04123 ribulokinase; Provisional
Probab=76.32 E-value=69 Score=30.09 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=75.8
Q ss_pred CceEecccccchhhHHHHHHhhc-----------CCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccc
Q psy6720 7 SPLCVLLTSLGGGTFLGLCCLLT-----------GCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFG 71 (182)
Q Consensus 7 ~~~rvgGs~iGGGT~~GL~~LLt-----------g~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFG 71 (182)
.|...+++.-||..+-=+.+.+. +...++++.+++++-....-. +.+-...|...|... -++-+|
T Consensus 324 ~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~G 403 (548)
T PRK04123 324 LIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITG 403 (548)
T ss_pred eeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCCCCCCCCCCceEEEC
Confidence 34455666666665544444441 124578888888765433323 333444454333221 233334
Q ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHHH
Q psy6720 72 HMNSKEKRESVSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYAM 136 (182)
Q Consensus 72 K~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~ai 136 (182)
+ ..+.+++|++++++.=|+..+-+..-...+ ...+++|+.+|.-...++..+++++.++
T Consensus 404 -l-----~~~~~~~~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~ 463 (548)
T PRK04123 404 -L-----TLGTDAPDIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL 463 (548)
T ss_pred -C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc
Confidence 2 224589999999999999988776544443 1236799999997577888889988553
No 36
>PRK00047 glpK glycerol kinase; Provisional
Probab=75.89 E-value=67 Score=29.76 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=72.5
Q ss_pred ceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccCCC
Q psy6720 8 PLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVS 83 (182)
Q Consensus 8 ~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~ 83 (182)
|..-+++..+|..+-=+...+....+.+++.++|++-.-.+ . +.+-...|...|... -++-+| + ....+
T Consensus 301 ~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~-gl~~lP~l~G~r~P~~d~~arg~~~G-l-----~~~~~ 373 (498)
T PRK00047 301 YALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDND-GVYVVPAFTGLGAPYWDSDARGAIFG-L-----TRGTT 373 (498)
T ss_pred EEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCC-CEEEeCccccCCCCCCCCCCcEEEEC-C-----CCCCC
Confidence 44455566555554333444422234567777775432111 2 334444554333221 233333 2 22457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 84 REDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 84 ~eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
++|++++++.=|++.+-+.--...+. ..+++|+.+|.- ..++..+++++.+
T Consensus 374 ~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv 426 (498)
T PRK00047 374 KEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGA-VANNFLMQFQADI 426 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCc-ccCHHHHHHHHHh
Confidence 99999999999999998876555443 347899999995 7888889999844
No 37
>KOG2517|consensus
Probab=72.56 E-value=44 Score=32.28 Aligned_cols=125 Identities=21% Similarity=0.179 Sum_probs=80.3
Q ss_pred cchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cc-cccccccccccccCCCHHHHHHHH
Q psy6720 16 LGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GM-FSFGHMNSKEKRESVSREDLARAT 91 (182)
Q Consensus 16 iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iA-SsFGK~~~~~~~~~~~~eDia~SL 91 (182)
+.|-.+..|...+.-.++.+++.++++.=+ ...|+.+===|.+-+.++- .. .-+|- +.+-+.|+||+++
T Consensus 320 ~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~-~t~d~~f~P~f~G~~sP~~d~~arg~i~Gl------s~~ts~~hia~A~ 392 (516)
T KOG2517|consen 320 FAGALVQWLRDNLGIIEELNEIEKLAAEVN-LTSDVHFVPDFHGLRSPYADPTARGVIIGL------SQDTSKEHLARAA 392 (516)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-ccCceEEEccccCCCCCCCCcccceeEEEe------cCCCCHHHHHHHH
Confidence 445556666666666677788888886655 4455443111334445542 22 22231 3467999999999
Q ss_pred HHHHHHHHHHH-HHHHHHH-hCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCch
Q psy6720 92 LVTITNNIGSI-ARMSAIN-ENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVC 154 (182)
Q Consensus 92 l~Mv~~nIg~l-a~l~A~~-~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gy 154 (182)
+..|++.+=++ ..+.... +.++++.+.|.. +.||..|+.++-. . .+...+++.-.-
T Consensus 393 leai~fqtr~Il~am~~~~~~~i~~L~~~GG~-s~N~ll~Q~~ADi---~---g~pv~~p~~~e~ 450 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGGHPISTLRVCGGL-SKNPLLMQLQADI---L---GLPVVRPQDVEA 450 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceeeecccc-ccCHHHHHHHHHH---h---CCccccccchhH
Confidence 99999988765 3444444 689998888886 8889999998844 3 355555555333
No 38
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=71.10 E-value=13 Score=34.19 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCC-----CC-ccccccccc--ccccccccCCCHHHHHHHHHHH
Q psy6720 23 GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSY-----ER-FLGMFSFGH--MNSKEKRESVSREDLARATLVT 94 (182)
Q Consensus 23 GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~-----~~-lgiASsFGK--~~~~~~~~~~~~eDia~SLl~M 94 (182)
-+++.+++ ..||+==++|++|... . -++.+.-..+| |+ .| -=.|+. +.....+.+.++||+.+.|...
T Consensus 196 ~~~~~~~~-~~~D~~G~~A~~G~v~-~-~lL~~ll~~pff~~~pPKStg-rE~F~~~~~~~~l~~~~~s~~D~~aTlt~~ 271 (365)
T PRK09585 196 AWIQRHGG-KPYDKDGAWAASGKVD-E-ALLARLLAHPYFALPPPKSTG-RELFNLAWLERQLAGFGLSPEDVQATLTEL 271 (365)
T ss_pred HHHHHHhC-CCCCCCChHHhCCCCC-H-HHHHHHhcCccccCCCCCccC-hhhcCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666665 4788888899999742 2 23344433332 22 22 000110 0000001135899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHH
Q psy6720 95 ITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAM 136 (182)
Q Consensus 95 v~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai 136 (182)
.+++|.+--.... ...++|+.+|-= +.||.+|+.|+..+
T Consensus 272 TA~sI~~~~~~~~--~~~~~vlv~GGG-a~N~~Lm~~L~~~l 310 (365)
T PRK09585 272 TAASIARAVRRLP--PGPDELLVCGGG-ARNPTLMERLAALL 310 (365)
T ss_pred HHHHHHHHHHhcc--CCCCEEEEECCC-cchHHHHHHHHHhc
Confidence 9999998763332 335689999988 77999999999643
No 39
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=70.76 E-value=19 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEEcccccccHHHHHHHHHHHH
Q psy6720 86 DLARATLVTITNNIGSIARMSAINE-NINKVVFVGNFLRVNPISMKLLAYAMD 137 (182)
Q Consensus 86 Dia~SLl~Mv~~nIg~la~l~A~~~-~i~~Ivf~G~~i~~~~~~m~~i~~ai~ 137 (182)
+-...+=.|+.+.--+++.++|.++ +++-|||+|..-.+.+.+.+.+...+.
T Consensus 294 ~A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 294 RAKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcC
Confidence 3333444455555567888899996 999999999976666666666665433
No 40
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=65.14 E-value=1.2e+02 Score=28.41 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=73.5
Q ss_pred ceEecccccchhhHHHHHHhhc-----------CCCCHHHHHHHHhcCCCCCCcc-eeccccCCCCCCcc---ccccccc
Q psy6720 8 PLCVLLTSLGGGTFLGLCCLLT-----------GCNSFEEAIELATSGDNTKVDK-LVRDIYGGSYERFL---GMFSFGH 72 (182)
Q Consensus 8 ~~rvgGs~iGGGT~~GL~~LLt-----------g~~~f~ei~~lA~~Gd~~~vDl-lV~DIyg~~~~~lg---iASsFGK 72 (182)
|---+++.-||..+-=+.+.+. +...|+++.+++++-....-++ .+-...|..-|... -++-+|
T Consensus 322 ~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~~d~~arG~~~G- 400 (536)
T TIGR01234 322 IGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITG- 400 (536)
T ss_pred eEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCCCCCcceEEEEC-
Confidence 3334556666666544555441 1123788888876544332232 33334454433322 234444
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 73 MNSKEKRESVSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 73 ~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
+ ..+.+++|++++++.=|++..-++--..-+ ...+++|+++|.-...++..+++++.+
T Consensus 401 l-----~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv 459 (536)
T TIGR01234 401 L-----TLATDAPLLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADV 459 (536)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHh
Confidence 2 234689999999999998887776333322 234689999999867788888988855
No 41
>PRK12440 acetate kinase; Reviewed
Probab=64.93 E-value=56 Score=30.48 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHh
Q psy6720 87 LARATLVTITNNI-GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWS 140 (182)
Q Consensus 87 ia~SLl~Mv~~nI-g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws 140 (182)
-|+-.+.|+.+-| -+++.+.|.+.+++-|||+|.-=.+.+.+.+.+...+.|..
T Consensus 295 ~A~lA~d~f~yri~k~Ig~~~a~l~gvDaiVFTgGIGen~~~vr~~i~~~l~~lg 349 (397)
T PRK12440 295 GATLAFEVFTYRVAKYIASYLAALDSLDGIIFTGGIGENSLPIRREILKNLKLLG 349 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhhhc
Confidence 4455566665555 46788888889999999999987777767788887778773
No 42
>PRK12379 propionate/acetate kinase; Provisional
Probab=62.71 E-value=63 Score=30.14 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=62.3
Q ss_pred cCCCCHHHHHHHHhcCCCCCCcceeccccCCC-C-CCcccccccccccccccccCCCHHHHHHHHHHHHHHHHH-HHHHH
Q psy6720 29 TGCNSFEEAIELATSGDNTKVDKLVRDIYGGS-Y-ERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIG-SIARM 105 (182)
Q Consensus 29 tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~-~-~~lgiASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg-~la~l 105 (182)
+|.-|+..++.|.+++..+ +|=+.+-+++.+ . .-.|+.+.+=.+.. +.+.. ..-|+-.+.|+++-|. +++.+
T Consensus 237 sG~ldp~~l~~l~~~~~~s-~~el~~~Lnk~SGLlg~sG~s~D~R~v~~---~~~~g-d~~A~lA~d~f~yri~k~IGa~ 311 (396)
T PRK12379 237 SGDVDFGAMAWIASQTGQT-LGDLERVVNKESGLLGISGLSSDLRVLEK---AWHEG-HERAQLAIKTFVHRIARHIAGH 311 (396)
T ss_pred CCCCChHHHHHHHHhcCCC-HHHHHHHHhccccceEecCCCCCHHHHHH---HHHCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4666888888888776532 222212223322 0 00112222222211 10111 2345555666665554 67778
Q ss_pred HHHHhCCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 106 SAINENINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 106 ~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
.|.+.+++-|||+|.--.+.+.+.+.+...+.|.
T Consensus 312 ~a~L~~vDaIVFTGGIGen~~~vR~~i~~~L~~l 345 (396)
T PRK12379 312 AASLHRLDGIIFTGGIGENSSLIRRLVMEHLAVL 345 (396)
T ss_pred HHHhCCCCEEEECCccccCcHHHHHHHHhhhhhc
Confidence 8888899999999999888888888888888887
No 43
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=62.06 E-value=52 Score=29.83 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=73.3
Q ss_pred hhhHHHHHHhhcCCC---CHHHHHHHHhcC-CCCCCcceeccccCCCC-CC--c----c-ccccccccc-----cccccc
Q psy6720 18 GGTFLGLCCLLTGCN---SFEEAIELATSG-DNTKVDKLVRDIYGGSY-ER--F----L-GMFSFGHMN-----SKEKRE 80 (182)
Q Consensus 18 GGT~~GL~~LLtg~~---~f~ei~~lA~~G-d~~~vDllV~DIyg~~~-~~--l----g-iASsFGK~~-----~~~~~~ 80 (182)
=|-+.+....++|.+ +--.++-||.-| +....+-.+.+++.... .. . + ......+.. ..+...
T Consensus 52 lG~~Y~~~T~~lGf~~~~~egKvMGLA~YG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (360)
T PF02543_consen 52 LGYFYEAITEYLGFKPNSDEGKVMGLAAYGKPPDRFDELLEELFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPL 131 (360)
T ss_dssp HHHHHHHHHHHTTS-TT--HHHHHHHHTTS--S-TTTTTEEEETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCCCcccceeeeccCCCCchHHHHHHHHHhccccCCCeeeeccccccccchhhhhhhhhccccccc
Confidence 466777777777766 556788999999 44445545555554321 11 0 0 111111110 000112
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCceEEEe
Q psy6720 81 SVSREDLARATLVTITNNIGSIARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFL 149 (182)
Q Consensus 81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl 149 (182)
....+|+|+++...+-+.+-.++-.+-+..++++ +.+.|-..-|....+++.. ....+-+|+
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~~~L~laGGvaLN~~~N~~l~~-------~~~~~~v~V 194 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTGIDNNLCLAGGVALNCKANGRLLE-------EPGFDNVFV 194 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT--SEEEEESGGGG-HHHHHHHHT-------STT-SEEE-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEechHHHHHHHHHHHHh-------cCCCCeEEE
Confidence 3578999999999999999999999999999998 9999998766665555544 335555565
No 44
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=61.32 E-value=78 Score=24.84 Aligned_cols=54 Identities=30% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 81 SVSREDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
+.+++|++++++.-++..+-+.--...+. ..+++|+.+|... .++..++.++.+
T Consensus 117 ~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~-~n~~~~q~~Adv 172 (198)
T PF02782_consen 117 DTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGA-KNPLWMQILADV 172 (198)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGG-GSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccc-cChHHHHHHHHH
Confidence 45699999999999999998887777554 7789999999985 888999999944
No 45
>PRK10331 L-fuculokinase; Provisional
Probab=60.31 E-value=1.4e+02 Score=27.43 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHhcCCCCCCccee-ccccCCCCCCcccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6720 31 CNSFEEAIELATSGDNTKVDKLV-RDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAIN 109 (182)
Q Consensus 31 ~~~f~ei~~lA~~Gd~~~vDllV-~DIyg~~~~~lgiASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~ 109 (182)
...++++.++|++-....-.+++ ....|.. .++-|| + ....+++|++++++.-|++++-+.--..-+.
T Consensus 317 ~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~-----rg~~~G-l-----~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 385 (470)
T PRK10331 317 ETPYQTMIEEARAIPPGADGVKMQCDLLACQ-----NAGWQG-V-----TLNTTRGHFYRAALEGLTAQLKRNLQVLEKI 385 (470)
T ss_pred CchHHHHHHHHhcCCCCCCceEecccccccC-----ceeEEC-C-----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888654322223332 1111111 333444 2 1245899999999999999997765555443
Q ss_pred --hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 110 --ENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 110 --~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
..+++|+.+|.- ..++..+++++.+
T Consensus 386 ~~~~~~~i~~~GGg-a~s~~w~Qi~Adv 412 (470)
T PRK10331 386 GHFKASELLLVGGG-SRNALWNQIKANM 412 (470)
T ss_pred cCCCCceEEEEccc-ccCHHHHHHHHHh
Confidence 358999999997 6788888998854
No 46
>PLN02669 xylulokinase
Probab=59.97 E-value=1.6e+02 Score=28.08 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHH
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAM 136 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai 136 (182)
.+++|++|+++.=++..+-...-..-.....++|+++|.- ..++..+++++..+
T Consensus 416 ~~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGg-s~s~~w~Qi~ADVl 469 (556)
T PLN02669 416 FDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGA-SANQSILKLIASIF 469 (556)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCh-hcCHHHHHHHHHHc
Confidence 6899999999999988876654444222347899999996 67888889998553
No 47
>PRK09557 fructokinase; Reviewed
Probab=56.83 E-value=1.3e+02 Score=25.78 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 87 ia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
.|+.++.-....+++.........+-+.||+.|.... .+..++.+...++-.
T Consensus 220 ~a~~~l~~~~~~La~~l~~l~~~ldP~~IvlgG~~~~-~~~~~~~l~~~~~~~ 271 (301)
T PRK09557 220 VAELAFRRYEDRLAKSLAHVINILDPDVIVLGGGMSN-VDRLYPTLPALLKQY 271 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccc-hHHHHHHHHHHHHHH
Confidence 5677888888999998888889999999999998766 466777777666544
No 48
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=56.47 E-value=95 Score=29.04 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=62.3
Q ss_pred cCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCc---ccccccccccccccccCCCHHHHHHHHHHHHHHHH-HHHHH
Q psy6720 29 TGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF---LGMFSFGHMNSKEKRESVSREDLARATLVTITNNI-GSIAR 104 (182)
Q Consensus 29 tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~l---giASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nI-g~la~ 104 (182)
+|.-|+.-++.|.++++.+. |=+-+-+|+.+ .-+ |+.+.+=.+.. ..+...+ -|+-.+.|+++-| -+++.
T Consensus 246 sG~lDp~~~~~l~~~~~~s~-~e~~~~Ln~~S-GLlg~sG~s~D~Rel~~---~~~~gd~-~A~lA~~~f~yri~k~Iga 319 (404)
T TIGR00016 246 SGDIDPAIISYLAETLGMSA-DDIENTLNKKS-GLLGISGLSSDLRDIED---AYAEGNE-QAQLAIKMYVHRIAKYIGS 319 (404)
T ss_pred CCCCChHHHHHHHHhcCCCH-HHHHHHHhhcc-cceEecCCCCCHHHHHH---HHHCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 67779999999988775332 21212224322 111 12222222211 1111122 3455556655555 46788
Q ss_pred HHHHHhC-CCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 105 MSAINEN-INKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 105 l~A~~~~-i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
+.|.+.| ++-|||+|.-=-+.+.+.+.+...+.|.
T Consensus 320 ~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~l 355 (404)
T TIGR00016 320 YIASLEGNLDAIVFTGGIGENAATVRELVLEALEFL 355 (404)
T ss_pred HHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhhc
Confidence 8888895 9999999998668888888888777777
No 49
>PRK03011 butyrate kinase; Provisional
Probab=51.77 E-value=72 Score=28.99 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHh-CCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 85 EDLARATLVTITNNIGS-IARMSAINE-NINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 85 eDia~SLl~Mv~~nIg~-la~l~A~~~-~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
+..|+.++.++++.|+. ++.+.+... +.+.|||+|.... .+...+.+...+++.
T Consensus 267 D~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~-~~~l~~~I~~~l~~~ 322 (358)
T PRK03011 267 DEKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAY-SKRLVERIKERVSFI 322 (358)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCcccc-CHHHHHHHHHHHHhh
Confidence 45788999999999997 455555553 7999999999765 777778888777765
No 50
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=50.32 E-value=70 Score=28.93 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 85 EDLARATLVTITNNIGSIARMSAINE--NINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 85 eDia~SLl~Mv~~nIg~la~l~A~~~--~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
+..|+.++.+.++.++.....++-.. +.+.|||+|..-. ++..++.+...+++.
T Consensus 265 D~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e-~~~l~~~I~~~l~~~ 320 (351)
T TIGR02707 265 DEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAY-SKYFVSEIIKRVSFI 320 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhc-CHHHHHHHHHHHHhh
Confidence 34689999999999996555555555 7999999999654 566667777666663
No 51
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=50.00 E-value=35 Score=28.44 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHhh
Q psy6720 99 IGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWT 163 (182)
Q Consensus 99 Ig~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~~ 163 (182)
|.+.-.+.|+.+|++++|+++. .+..+++++..+++| -++ +.++....+-.++.-|.
T Consensus 18 itthvartARafGa~~~yiv~~----~~~q~~~v~~I~~~W-Gg~---fnv~~~~s~~~~i~~~k 74 (176)
T PRK03958 18 ITTHVGLTARALGADKIILASN----DEHVKESVEDIVERW-GGP---FEVEVTKSWKKEIREWK 74 (176)
T ss_pred hhhHHHHHHHHcCCceEEEecC----cHHHHHHHHHHHHhc-CCc---eEEEEcCCHHHHHHHHH
Confidence 4566778999999999999977 356678888888999 223 33565555556666665
No 52
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=47.72 E-value=54 Score=30.40 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHH
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAY 134 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ 134 (182)
.+.||+.+.|......+|..-.- -..+..++.+.+|.= +.||.+|+-++.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~--~~~~~p~~l~vcGGG-~~N~llm~rLa~ 312 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVA--TLQGDPRRLVVCGGG-RRNPLLMARLAA 312 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh--hccCCCceeEeecCC-ccCHHHHHHHHH
Confidence 79999999999999999986554 467889999999998 889999999984
No 53
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=44.52 E-value=22 Score=28.38 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCC
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHE 152 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~ 152 (182)
||++..-++..++++|+.+-.-+.++|..+.++.-|. ..+++..|+.=+
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~l~ma~----P~gvk~~i~sv~ 62 (151)
T PF03830_consen 14 GQVATAWVKKLNANRIIVVDDEVANDPFQKMILKMAA----PAGVKLSIFSVE 62 (151)
T ss_dssp TTHHHHHHHHHTTSEEEEE-HHHHHSHHHHHHHHHTS----HTTSEEEEE-HH
T ss_pred eeeeEEEhhhcccCEEEEECHHHhcCHHHHHHHHHhh----cCCCceEEEEHH
Confidence 7899999999999999999999999999888877552 345565554433
No 54
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=43.84 E-value=34 Score=27.38 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
||++..-.+..++++|+.+-..+.++|....++.-|
T Consensus 14 GQV~~~W~~~~~~~~IiVvdD~~A~D~~~k~~lkma 49 (151)
T TIGR00854 14 GQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIV 49 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhh
Confidence 899999999999999999999999999877777654
No 55
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=43.08 E-value=96 Score=26.05 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEcccccccHHHHHHHHHHHHHHhc--CCceEEEecCCchhhhh
Q psy6720 83 SREDLARATLVTITNNIGSIARMSAINENINK--VVFVGNFLRVNPISMKLLAYAMDYWSK--GTQKALFLEHEVCIIGI 158 (182)
Q Consensus 83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~--Ivf~G~~i~~~~~~m~~i~~ai~yws~--g~~~alFl~h~gyl~ga 158 (182)
+....|..++.-.++.+.+......+..+..+ |+++|..+.+.+.. +.+. ++..+ .+.+..-+++..|- ++
T Consensus 190 ~gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~-~~l~---~~l~~~~~~~~~~~~~~~~~~-~a 264 (271)
T PF01869_consen 190 QGDEVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLV-KALR---DALKEKLPKVPIIIPVEPQYD-PA 264 (271)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHH-HHHG---GGS-HHHHCCTCECECCGSSH-HH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHH-HHHH---HHHHHhcCCCceEECCCCCcc-HH
Confidence 34556777777777778877777777777765 99999998876644 3332 12222 12222345566666 55
Q ss_pred hHH
Q psy6720 159 FDH 161 (182)
Q Consensus 159 ~~a 161 (182)
.+|
T Consensus 265 ~GA 267 (271)
T PF01869_consen 265 YGA 267 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 56
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.48 E-value=2.1e+02 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHH
Q psy6720 86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDY 138 (182)
Q Consensus 86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~y 138 (182)
..|+.++.-.+..+++.....+...+.++||+.|... ..+..++.+...++-
T Consensus 208 ~~a~~~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~-~~~~~~~~i~~~l~~ 259 (291)
T PRK05082 208 EQAQALINRSAQAIARLIADLKATLDCQCVVLGGSVG-LAEGYLELVQAYLAQ 259 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCccc-cHHHHHHHHHHHHHh
Confidence 3456677778888888888888999999999999864 455555666655554
No 57
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.00 E-value=2.3e+02 Score=24.15 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHH
Q psy6720 85 EDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMD 137 (182)
Q Consensus 85 eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~ 137 (182)
+..|+.++.-....+++.........+-+.||..|.... .+..++.+...++
T Consensus 219 d~~a~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~-~~~~~~~l~~~~~ 270 (303)
T PRK13310 219 DEQAVAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSN-FDAIYEQLPKRLP 270 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC-hHHHHHHHHHHHH
Confidence 345677888888888888888889999999999998766 5656666666654
No 58
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=40.97 E-value=1.2e+02 Score=27.97 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hC
Q psy6720 34 FEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAIN--EN 111 (182)
Q Consensus 34 f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~--~~ 111 (182)
|+++.++|++=....-.++ |..+. ..+..-++-|| + +.+.+++|++++++.=|++.+-+.--...+. ..
T Consensus 323 ~~~l~~~a~~~~~g~~gl~--~~~p~-~~~~a~g~~~G-l-----~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~ 393 (465)
T TIGR02628 323 YQMMIEEARLIANGADGVV--NFQCD-LLSCGQGGIQG-L-----TLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFK 393 (465)
T ss_pred HHHHHHHHHhCCCCCCcce--eeccc-CCcccceeEEC-C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5888888765432221122 11111 11122334444 2 2356899999999999999998877666554 35
Q ss_pred CCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCC
Q psy6720 112 INKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHE 152 (182)
Q Consensus 112 i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~ 152 (182)
+++|+.+|.- ..++..|++++.+ . ++....+++.
T Consensus 394 ~~~i~~~GGg-a~s~~w~Qi~Adv---~---g~pV~~~~~~ 427 (465)
T TIGR02628 394 ASELLLVGGG-SKNTLWNQIRANM---L---DIPVKVVDDA 427 (465)
T ss_pred cceEEEecCc-cCCHHHHHHhhhh---c---CCeeEeccCC
Confidence 7899999997 6788888988844 3 4444455553
No 59
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=40.57 E-value=40 Score=27.18 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCc
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEV 153 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~g 153 (182)
||++..-.+..++++|+.+-..+.++|....++.-|. ..+++..++.-+.
T Consensus 16 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma~----P~gvk~~i~sv~~ 65 (157)
T PRK11425 16 GQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVL----AEGIAVRFWTLQK 65 (157)
T ss_pred HHhhhhhhcccCCCEEEEEcchhcCCHHHHHHHHhhC----CCCCeEEEEEHHH
Confidence 8999999999999999999999999998877776542 2345554444443
No 60
>PRK09698 D-allose kinase; Provisional
Probab=39.15 E-value=2.3e+02 Score=24.01 Aligned_cols=65 Identities=6% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhc-----CCceEEEecCCchh
Q psy6720 91 TLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK-----GTQKALFLEHEVCI 155 (182)
Q Consensus 91 Ll~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~-----g~~~alFl~h~gyl 155 (182)
++..+...+++.........+.+.||+.|......+...+.+...++-+.. ...+..+..++...
T Consensus 216 ~~~~~~~~la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a 285 (302)
T PRK09698 216 FIQSLLENLARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFN 285 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcc
Confidence 445566667776666778889999999999877666555556555554332 23444454444443
No 61
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=38.68 E-value=45 Score=26.61 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
||++..-.+..++++|+.+-.-+.++|....++.-|
T Consensus 13 GQV~~~W~~~~~~~~IvVvdD~~A~D~~~k~~l~ma 48 (151)
T cd00001 13 GQVATTWTKELNANRIIVVNDEVANDELRKTLLKLA 48 (151)
T ss_pred hHhhhhhhcccCCCEEEEEcccccCCHHHHHHHHhh
Confidence 899999999999999999999999999877776644
No 62
>PRK12408 glucokinase; Provisional
Probab=35.42 E-value=1.5e+02 Score=26.25 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcccccc-cHHHHHH--HHHHHHHH----hcCCceEEEecCCchhh
Q psy6720 85 EDLARATLVTITNNIGSIARMSAINENINK-VVFVGNFLRV-NPISMKL--LAYAMDYW----SKGTQKALFLEHEVCII 156 (182)
Q Consensus 85 eDia~SLl~Mv~~nIg~la~l~A~~~~i~~-Ivf~G~~i~~-~~~~m~~--i~~ai~yw----s~g~~~alFl~h~gyl~ 156 (182)
+..|+.++......+++.....+...+.+. ||+.|..... .+..++. +...++-+ ....++....+++ ..
T Consensus 245 D~~A~~~~~~~~~~La~~i~nl~~~ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~-~a- 322 (336)
T PRK12408 245 DALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHG-QL- 322 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCC-Ch-
Confidence 567788999999999999999999999999 9999987543 3433332 33211111 0134555556665 44
Q ss_pred hhhHH
Q psy6720 157 GIFDH 161 (182)
Q Consensus 157 ga~~a 161 (182)
|+++|
T Consensus 323 gl~GA 327 (336)
T PRK12408 323 GVLGA 327 (336)
T ss_pred HHHHH
Confidence 55554
No 63
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=34.91 E-value=55 Score=26.38 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCC
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHE 152 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~ 152 (182)
||++..-++..++++|+.+-..+.++|....++.-|. ...+++..|+.-+
T Consensus 18 GQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lkma~---~P~gvk~~i~sv~ 67 (158)
T PRK09756 18 GQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGITA---ETYGFGIRFFTIE 67 (158)
T ss_pred HHHHHhhhcccCCCEEEEEcchhcCCHHHHHHHHhcC---CCCCCEEEEEEHH
Confidence 8999999999999999999999999998877777542 1234454444433
No 64
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=34.52 E-value=3.9e+02 Score=24.95 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 82 VSREDLARATLVTITNNIGSIARMSAI--NENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 82 ~~~eDia~SLl~Mv~~nIg~la~l~A~--~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
.+++|++++++.-|++.+-+.--...+ ...+++|+.+|.. ..++..+++++.+
T Consensus 378 ~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv 432 (520)
T PRK10939 378 CNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGG-SKGKLWSQILADV 432 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-ccCHHHHHHHHHh
Confidence 378999999999999988666554433 2346899999996 6778788888833
No 65
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=32.49 E-value=1.8e+02 Score=25.97 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCce------EEEecCCchhh
Q psy6720 84 REDLARATLVTITNNIGSIARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQK------ALFLEHEVCII 156 (182)
Q Consensus 84 ~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~------alFl~h~gyl~ 156 (182)
.+.+|+-.+.++..-.|+.|--.|..+..+. ||+.|.....+...++.=.+--.|..|+.++ |+|+--+...
T Consensus 226 ~d~~a~~al~~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~- 304 (316)
T PF02685_consen 226 GDPLAREALDLFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDA- 304 (316)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-H-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCH-
Confidence 3456777889999999999999999999996 9999988777776554212222566676555 5666555555
Q ss_pred hhhHH
Q psy6720 157 GIFDH 161 (182)
Q Consensus 157 ga~~a 161 (182)
|+.||
T Consensus 305 gL~Ga 309 (316)
T PF02685_consen 305 GLLGA 309 (316)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 66
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=29.47 E-value=2.4e+02 Score=25.75 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCEEEEEcccccccHHHHHHHHHHH
Q psy6720 81 SVSREDLARATLVTITNNIGSIARMSAI--NENINKVVFVGNFLRVNPISMKLLAYAM 136 (182)
Q Consensus 81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~--~~~i~~Ivf~G~~i~~~~~~m~~i~~ai 136 (182)
..+++|++|+++.=|++..-+.--..-+ ...+++|+.+|.- ..++..|++++.++
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGg-a~s~~w~Qi~ADvl 411 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGG-SQNAFLNQLCADAC 411 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECCh-hhhHHHHHHHHHHh
Confidence 4689999999999999988666544433 2357899999997 67888889988553
No 67
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=26.72 E-value=95 Score=27.85 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYA 135 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~a 135 (182)
||++..-.+..++++|+.+-..+.++|..+.++.-|
T Consensus 177 GQV~~~W~~~~~~~~IiVvdD~vA~D~~~k~~lk~A 212 (322)
T PRK15088 177 GQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQV 212 (322)
T ss_pred HHHHHHHhhccCCCEEEEeCccccCCHHHHHHHHhc
Confidence 899999999999999999999999999887777644
No 68
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=26.60 E-value=2.9e+02 Score=21.53 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhCCCEE----EEEcccccccHHHHHHHHHHHHHHhcCC
Q psy6720 95 ITNNIGSIARMSAINENINKV----VFVGNFLRVNPISMKLLAYAMDYWSKGT 143 (182)
Q Consensus 95 v~~nIg~la~l~A~~~~i~~I----vf~G~~i~~~~~~m~~i~~ai~yws~g~ 143 (182)
++++|-.++.-+|+.|+.++| +=+|.+-..+| +.+++|++--++|.
T Consensus 6 la~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~---~~l~FaFev~~egT 55 (115)
T COG0375 6 LAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEP---EALRFAFEVVAEGT 55 (115)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCH---HHHHHHHHHHhccC
Confidence 456666777788999999876 56899988888 67888888888863
No 69
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=26.01 E-value=43 Score=30.83 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEcccccccHHHH-HHHHHHHHHHhcCCceEEEecCCchh
Q psy6720 97 NNIGSIARMSAINENINKVVFVGNFLRVNPISM-KLLAYAMDYWSKGTQKALFLEHEVCI 155 (182)
Q Consensus 97 ~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m-~~i~~ai~yws~g~~~alFl~h~gyl 155 (182)
|++-.++--..+.+|.+|++++|+-- .-|..+ +++. ++.....-+.+- |-|+
T Consensus 119 Q~~~pl~~~~~~~~G~~r~~lvGSdY-v~pre~Nri~r---~~l~~~Ggevvg---E~Y~ 171 (363)
T PF13433_consen 119 QQLLPLIDYLLENFGAKRFYLVGSDY-VYPRESNRIIR---DLLEARGGEVVG---ERYL 171 (363)
T ss_dssp GTHHHHHHHHHHHS--SEEEEEEESS-HHHHHHHHHHH---HHHHHTT-EEEE---EEEE
T ss_pred hhHHHHHHHHHhccCCceEEEecCCc-cchHHHHHHHH---HHHHHcCCEEEE---EEEe
Confidence 34445555556677899999999863 334333 3333 667676666655 6677
No 70
>PRK07058 acetate kinase; Provisional
Probab=26.00 E-value=2.6e+02 Score=26.17 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCc---ccccccccccccccccCCCHHHHHHHHHHHHHHHHH-HHHH
Q psy6720 29 TGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF---LGMFSFGHMNSKEKRESVSREDLARATLVTITNNIG-SIAR 104 (182)
Q Consensus 29 tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~l---giASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg-~la~ 104 (182)
+|.-|+.-++.|.++++.+ +|=+-+-+++.+ .-+ |+.+.+=.+. ... ..-|+-.+.|+++-|. +++.
T Consensus 241 sG~ldp~~l~~l~~~~~~s-~~el~~~Ln~~S-GLlg~sG~s~D~R~l~------~~~-d~~A~lA~d~f~yri~k~IGa 311 (396)
T PRK07058 241 CGALDPGVVLHLLKQEGMS-LDEVEDLLYHRS-GLLGVSGISGDTRDLL------ASD-APEAREALDLFALRIAGEIAR 311 (396)
T ss_pred CCCCChHHHHHHHHhcCCC-HHHHHHHHhccc-CcEEecCCCCCHHHHh------hcC-CHhHHHHHHHHHHHHHHHHHH
Confidence 6777999999999877533 222212224322 111 1222322221 111 2335556666666554 6777
Q ss_pred HHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 105 MSAINENINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 105 l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
+.|.+-+++-|||+|.-=-+.+.+.+.+...+.|.
T Consensus 312 ~~a~Lg~vDaiVfTGGIgEns~~vr~~i~~~l~~l 346 (396)
T PRK07058 312 LAATLGGLDAVVFTAGIGEHQPAIRAAVCERLAWL 346 (396)
T ss_pred HHHHhCCCCEEEECCccccCcHHHHHHHHhhhhhh
Confidence 88888999999999998668888888888777877
No 71
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=25.99 E-value=2.6e+02 Score=25.87 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc--cccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6720 30 GCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL--GMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSA 107 (182)
Q Consensus 30 g~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg--iASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A 107 (182)
+..+++++.++|++=. ..+-++ +-+|..+..-+ -++-||--........-+++|++|+++.=|++.+-+.--...
T Consensus 293 ~~~~~~~l~~~a~~~~--g~~gli-~p~ger~~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~ 369 (471)
T PRK10640 293 QITDLPALIAATAALP--ACRFLI-NPNDDRFINPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELA 369 (471)
T ss_pred ccCCHHHHHHHHHhCC--CCCcee-CCCcccccCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889988886532 223233 22333321100 122222111111112348999999999999998877665554
Q ss_pred HH--hCCCEEEEEcccccccHHHHHHHHHHH
Q psy6720 108 IN--ENINKVVFVGNFLRVNPISMKLLAYAM 136 (182)
Q Consensus 108 ~~--~~i~~Ivf~G~~i~~~~~~m~~i~~ai 136 (182)
+. ..+++|+.+|.- ..++..+++++.++
T Consensus 370 ~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADvl 399 (471)
T PRK10640 370 QLRGEPFSQLHIVGGG-CQNALLNQLCADAC 399 (471)
T ss_pred HHhCCCcceEEEECCh-hhhHHHHHHHHHHh
Confidence 43 346899999997 66788889988553
No 72
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=25.76 E-value=66 Score=24.65 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=27.0
Q ss_pred ccccchhhHHHHHHhhcCCCCHHHHHHHHhc
Q psy6720 13 LTSLGGGTFLGLCCLLTGCNSFEEAIELATS 43 (182)
Q Consensus 13 Gs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~ 43 (182)
|--+||.-+=||+..|++..--+.+.++|++
T Consensus 12 GVvlGGsliGglga~l~~~pPl~~m~~lA~~ 42 (102)
T PF14034_consen 12 GVVLGGSLIGGLGAFLTGQPPLKTMLDLAND 42 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5568888899999999999999999999863
No 73
>PRK07157 acetate kinase; Provisional
Probab=25.41 E-value=2.1e+02 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHh-CCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 87 LARATLVTITNNI-GSIARMSAINE-NINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 87 ia~SLl~Mv~~nI-g~la~l~A~~~-~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
-|+-.+.|+++-| -+++.++|.+. +++-|||+|.-=.+.+.+++.+...+.|.
T Consensus 294 ~A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~~l 348 (400)
T PRK07157 294 RAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKINIP 348 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcccc
Confidence 4455555555555 56788888999 49999999998777776777777777776
No 74
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.55 E-value=79 Score=24.82 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Q psy6720 92 LVTITNNIGSIARMSAINENINKVVFVGNF 121 (182)
Q Consensus 92 l~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~ 121 (182)
..--+.+++..|+..|...|.++|+++|-=
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~I~L~G~D 164 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKPIYLIGQD 164 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCcEEEEeec
Confidence 445577899999999999999999999953
No 75
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.49 E-value=1.7e+02 Score=21.99 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHh
Q psy6720 100 GSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWS 140 (182)
Q Consensus 100 g~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws 140 (182)
-|-++|-+..|.++-||.+|.- -..+..+.-+..|++-..
T Consensus 6 kqr~~LR~~ah~l~Pvv~IGk~-Glt~~vi~ei~~aL~~hE 45 (97)
T PRK10343 6 KQKQHLKGLAHPLKPVVLLGSN-GLTEGVLAEIEQALEHHE 45 (97)
T ss_pred HHHHHHHHhcCCCCCeEEECCC-CCCHHHHHHHHHHHHHCC
Confidence 4788999999999999999997 666777788888776653
No 76
>CHL00194 ycf39 Ycf39; Provisional
Probab=24.41 E-value=2.9e+02 Score=23.51 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=30.1
Q ss_pred HHHHHhCCCEEEEEcccc----cccHHHHHHHHHHHHHHhcCCceEEEecCCchh
Q psy6720 105 MSAINENINKVVFVGNFL----RVNPISMKLLAYAMDYWSKGTQKALFLEHEVCI 155 (182)
Q Consensus 105 l~A~~~~i~~Ivf~G~~i----~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl 155 (182)
-+|+..+++|+|+++..- ...|. .+.-..+-++.....++...+|-.++.
T Consensus 95 ~aa~~~gvkr~I~~Ss~~~~~~~~~~~-~~~K~~~e~~l~~~~l~~tilRp~~~~ 148 (317)
T CHL00194 95 EAAKAAKIKRFIFFSILNAEQYPYIPL-MKLKSDIEQKLKKSGIPYTIFRLAGFF 148 (317)
T ss_pred HHHHHcCCCEEEEeccccccccCCChH-HHHHHHHHHHHHHcCCCeEEEeecHHh
Confidence 456778999999988741 11222 222222334555567888888877665
No 77
>KOG2708|consensus
Probab=24.17 E-value=5.3e+02 Score=23.16 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchh
Q psy6720 80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCI 155 (182)
Q Consensus 80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl 155 (182)
.++++||+.-||...+.--+..+.--+---.+-+.+..+|..=||.. +++.+ .-+.+..---+|-.+|-|-
T Consensus 223 ~~~t~~DLCySLQEtvFamLVEiTERAMAh~~s~evLIVGGVGCN~R-LQeMM----~~Mc~eRgg~~faTDeRfC 293 (336)
T KOG2708|consen 223 SEVTKEDLCYSLQETVFAMLVEITERAMAHCGSKEVLIVGGVGCNER-LQEMM----AIMCSERGGKLFATDERFC 293 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEecccccHH-HHHHH----HHHHHhcCCceEeccccee
Confidence 46899999999998887777776665555668889999998755432 33333 3333322233566665554
No 78
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.80 E-value=1.3e+02 Score=25.21 Aligned_cols=58 Identities=12% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHhh
Q psy6720 99 IGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWT 163 (182)
Q Consensus 99 Ig~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~~ 163 (182)
|.+.-+|.|++.|.+.|++.|.- .+..++++...+..|.- . +|++...-....+..|.
T Consensus 19 iTTHV~LtARAfGA~gil~~~e~---De~v~esv~dVv~rwGG-~---F~v~~~~nw~~~i~~wk 76 (179)
T COG1303 19 ITTHVALTARAFGADGILLDGEE---DEKVVESVEDVVERWGG-P---FFVKFGVNWRKVIREWK 76 (179)
T ss_pred chhhhhhhhHhhCCceEEEcCcc---cHHHHHHHHHHHHhcCC-C---EEEEEcccHHHHHHHhh
Confidence 45667899999999999999874 56778999999999932 1 44444333335555554
No 79
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=22.87 E-value=2.9e+02 Score=25.76 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=60.8
Q ss_pred cCCCCHHHHHHHHhcCCCCCCcceeccccCCC-CCC-cccccccccccccccccCCCHHHHHHHHHHHHHH-HHHHHHHH
Q psy6720 29 TGCNSFEEAIELATSGDNTKVDKLVRDIYGGS-YER-FLGMFSFGHMNSKEKRESVSREDLARATLVTITN-NIGSIARM 105 (182)
Q Consensus 29 tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~-~~~-lgiASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~-nIg~la~l 105 (182)
+|.-|+..++.|.+++..+ +|=+-+-+|+.+ .-. .|+.+.+=.+.. +.+...+ -|+-.+.|+.+ .--+++.+
T Consensus 242 sG~ldp~~v~~l~~~~~~s-~~el~~~L~~~sGLlg~sG~s~D~Rel~~---~~~~gd~-~A~lA~d~f~yri~k~Iga~ 316 (402)
T PRK00180 242 SGDIDPAIIPYLMEKLGMS-VDEIDNLLNKKSGLLGLSGVSSDMRDIEA---AAEEGDE-RAKLALDVFVYRLAKYIGSY 316 (402)
T ss_pred CCCCChHHHHHHHHhcCCC-HHHHHHHHhccccceEecCCCCCHHHHHH---HHHCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556888888888776532 222222234432 100 112222222211 1011122 34444445444 44567888
Q ss_pred HHHH-hCCCEEEEEcccccccHHHHHHHHHHHHHH
Q psy6720 106 SAIN-ENINKVVFVGNFLRVNPISMKLLAYAMDYW 139 (182)
Q Consensus 106 ~A~~-~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw 139 (182)
.|.+ -+++-|||+|.--.+.+.+.+.+...+.|.
T Consensus 317 ~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~~l 351 (402)
T PRK00180 317 AAALNGRLDAIVFTAGIGENSALVREKVLEGLEFL 351 (402)
T ss_pred HHHhcCCCCEEEEcCccccCCHHHHHHHHhhhhhc
Confidence 8888 889999999997668888888888888887
No 80
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=21.75 E-value=2.2e+02 Score=21.16 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720 101 SIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH 151 (182)
Q Consensus 101 ~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h 151 (182)
|-++|-++.|+++-+|.+|.- -..+-.++-+..|++-- .=+|.-+++.
T Consensus 5 qr~~Lr~~ah~l~p~v~IGK~-Glt~~vi~ei~~aL~~h--ELIKVkvl~~ 52 (95)
T TIGR00253 5 QKRHLRGKAHHLKPVVLVGKN-GLTEGVIKEIEQALEHR--ELIKVKVATE 52 (95)
T ss_pred HHHHHHHHhCCCCCeEEECCC-CCCHHHHHHHHHHHHhC--CcEEEEecCC
Confidence 678999999999999999997 55677788888665443 3334445444
No 81
>PHA01808 putative structural protein
Probab=21.55 E-value=81 Score=23.87 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=11.3
Q ss_pred CCCCCcceeccccCC
Q psy6720 45 DNTKVDKLVRDIYGG 59 (182)
Q Consensus 45 d~~~vDllV~DIyg~ 59 (182)
.|.+|||.+..|-..
T Consensus 52 ~n~qvdl~~en~~~~ 66 (98)
T PHA01808 52 RNQQVDLTAENVAQV 66 (98)
T ss_pred hhcccccccccCccc
Confidence 467999999887543
No 82
>PRK00292 glk glucokinase; Provisional
Probab=21.48 E-value=4.7e+02 Score=22.45 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEccccc-ccHHHHH
Q psy6720 86 DLARATLVTITNNIGSIARMSAINENIN-KVVFVGNFLR-VNPISMK 130 (182)
Q Consensus 86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~-~~~~~m~ 130 (182)
.+|+.++......+|+.....+...+.+ .||+.|..+. ..+...+
T Consensus 228 ~~A~~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~~~~~~~~~~ 274 (316)
T PRK00292 228 PLCRRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKA 274 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchHHhHHhhhcc
Confidence 5678899999999999999999999999 9999998874 3343333
No 83
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=20.53 E-value=2.8e+02 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEccccc
Q psy6720 86 DLARATLVTITNNIGSIARMSAINENIN-KVVFVGNFLR 123 (182)
Q Consensus 86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~ 123 (182)
.+|+.++..+...+|+.....+...+-+ -||+.|..+.
T Consensus 234 ~~A~~~~~~~~~~lg~~i~nl~~~ldpeggv~v~GG~~~ 272 (316)
T TIGR00749 234 TDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIAGGIVP 272 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEECcHHH
Confidence 4899999999999999999999999998 7777777763
Done!