RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6720
(182 letters)
>gnl|CDD|217646 pfam03630, Fumble, Fumble. Fumble is required for cell division in
Drosophila. Mutants lacking fumble exhibit abnormalities
in bipolar spindle organisation, chromosome segregation,
and contractile ring formation. Analyses have
demonstrated that encodes three protein isoforms, all of
which contain a domain with high similarity to the
pantothenate kinases of A. nidulans and mouse. A role of
fumble in membrane synthesis has been proposed.
Length = 329
Score = 219 bits (560), Expect = 9e-72
Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 8/146 (5%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
+SLGGGTFLGL LLTGC SF+E +++A GDN+ VD LVRDIYGG Y +F G+
Sbjct: 172 SSLGGGTFLGLGSLLTGCTSFDELLDMAQKGDNSNVDMLVRDIYGGDYSKF-GLKGDLIA 230
Query: 68 FSFGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
SFG + + KR E S ED+AR+ L I+NNIG IA + A+ N+ ++ F G+F+R NP
Sbjct: 231 SSFGKVFRELKRLEDFSPEDIARSLLRMISNNIGQIAYLCALRFNLKRIYFGGSFIRNNP 290
Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
I+MK L+YA++YWSKG KA FL HE
Sbjct: 291 ITMKTLSYAINYWSKGELKAYFLRHE 316
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase,
eukaryotic/staphyloccocal type. This model describes a
eukaryotic form of pantothenate kinase, characterized
from the fungus Aspergillus nidulans and with similar
forms known in several other eukaryotes. It also
includes forms from several Gram-positive bacteria
suggested to have originated from the eukaryotic form by
lateral transfer. It differs in a number of biochemical
properties (such as inhibition by acetyl-CoA) from most
bacterial CoaA and lacks sequence similarity. This
enzyme is the key regulatory step in the biosynthesis of
coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pantothenate and coenzyme A].
Length = 296
Score = 180 bits (458), Expect = 6e-57
Identities = 77/144 (53%), Positives = 97/144 (67%), Gaps = 8/144 (5%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
TSLGGGTFLGL LLTG +F+E +E+A GD T VD LV DIYGG Y L
Sbjct: 145 TSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTAS 204
Query: 69 SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
SFG + SK +S S ED+A + L I NNIG IA + A+ NI+++VF+G+FLR N +
Sbjct: 205 SFGKVLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLL 264
Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
MK+L+YA ++WSK KALFLEHE
Sbjct: 265 MKVLSYATNFWSK---KALFLEHE 285
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1.
Length = 398
Score = 118 bits (298), Expect = 3e-32
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 7/146 (4%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFS---- 69
TS+GGGTF GL LLT C SF+E +EL+ G+N +D LV DIYGG +G+ S
Sbjct: 193 TSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIA 252
Query: 70 --FGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
FG S K E ED+AR+ L I+NNIG I+ ++A+ + ++ F G F+R +
Sbjct: 253 SSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHS 312
Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
+M ++ A+ +WSKG KA+FL HE
Sbjct: 313 YTMDTISVAVHFWSKGEAKAMFLRHE 338
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 116 bits (292), Expect = 8e-32
Identities = 65/164 (39%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
+SLGGGT GL LLT +++ +++A GDN VD LV DIYG YE L
Sbjct: 173 SSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIAS 232
Query: 69 SFGHM--NSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
SFG + + + E + D+ + L I+NNIG IA + A N + F G+F R +
Sbjct: 233 SFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHL 292
Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE--VCIIGIF-DHWTSHPA 167
++M L YA+ WSK T A FLEHE + IG F TS P+
Sbjct: 293 LTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLGATSQPS 336
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 116 bits (291), Expect = 2e-30
Identities = 57/146 (39%), Positives = 90/146 (61%), Gaps = 7/146 (4%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
T++GGGT+ GL LLT C SF+E +EL+ GDN+ +D LV DIYGG +G+
Sbjct: 242 TNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIA 301
Query: 68 FSFGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
SFG + S+ K ED++ + L I+ NIG I+ ++A+ + ++ F G F+R +
Sbjct: 302 SSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHA 361
Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
+M +++A+ +WSKG +A+FL HE
Sbjct: 362 YTMDTISFAVHFWSKGEAQAMFLRHE 387
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 76.0 bits (187), Expect = 2e-16
Identities = 54/188 (28%), Positives = 78/188 (41%), Gaps = 51/188 (27%)
Query: 16 LGGGTFLGLCCLLTGCNSFEEAIE---LATSGDNTKVDKLVRDIYGGSYERFLGMFS--- 69
+GG TF GL +T S+EE +E L GDN VD LV DIYG + + M S
Sbjct: 1245 IGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDT 1304
Query: 70 ----FGHMNSK---EKRESVSRE------------------------------------- 85
FG + ++ E VS
Sbjct: 1305 VASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASA 1364
Query: 86 -DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQ 144
D+ R+ L I++N+ +A + + + + + F G F+R NPI ++ M YWSKG
Sbjct: 1365 IDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGEC 1424
Query: 145 KALFLEHE 152
A FLEH+
Sbjct: 1425 HAHFLEHD 1432
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 63.4 bits (155), Expect = 2e-12
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF---LGMFSF 70
T +GGGT GL LLT + +E+ IELA GD +D V DIY G L +F
Sbjct: 123 TGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNF 182
Query: 71 GHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
G + E + D+ + + I +++ +A +NI +V++G+ L NP
Sbjct: 183 GKVLHHLDSEF-TSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNP 237
>gnl|CDD|170188 PRK09973, PRK09973, putative outer membrane lipoprotein;
Provisional.
Length = 85
Score = 31.1 bits (70), Expect = 0.073
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 19 GTFLGLCCLLTGCNSFEEAIELATSGD--NTKVDKLVRDI 56
G + CLL+GC + ++ +LA++ N K+ +L +D+
Sbjct: 8 GAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDM 47
>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed.
Length = 364
Score = 30.6 bits (69), Expect = 0.40
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 53 VRDIYGGSYERF-----LGMFSFGHMNSKEKRESVSREDLARATLVTITNNIG---SIAR 104
VRD+YGGS+ F G F F + N++E+ + ED + T TN + I +
Sbjct: 98 VRDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEK 157
Query: 105 MSAINENINKVVFVGN 120
++ + V V N
Sbjct: 158 VAKLAHAKGAKVIVDN 173
>gnl|CDD|182196 PRK10017, PRK10017, colanic acid biosynthesis protein; Provisional.
Length = 426
Score = 29.4 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 62 ERF--LGMFSFGHMNSKEKRESVSREDLARATLVT 94
E+F L + FGH ++ RESVS + + R+ + T
Sbjct: 164 EQFNQLANYVFGHCDALILRESVSLDLMKRSNITT 198
>gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional.
Length = 1071
Score = 29.0 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 72 HMNSKEKRESVSREDL-ARATLVT--ITNNIGSIARMSAI-------------NENINKV 115
H++ E +S +DL AR +T + + G++ + I NE N
Sbjct: 585 HLSKLGMSEGLSTDDLIARDMFITSEVERSFGNVQELPYIACGPAEEQQYINRNEVFNGN 644
Query: 116 VFVGNF-LRV-----NPISMKLLAYAMDYWSKGTQKALFL 149
+ +GN L V + + LL AM + G +AL L
Sbjct: 645 LAIGNIILDVDVHLKQAVPLILLHAAMRGFRSGALRALSL 684
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family. This family
of proteins probably use S-AdoMet.
Length = 142
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 93 VTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK 141
N+G+IAR +A + ++ V +P + K + +
Sbjct: 9 PQDPGNLGAIAR-TAAAFGADGLILVEP-RCADPYNPKAIRASAGALFH 55
>gnl|CDD|197360 cd10052, Reelin_repeat_8_subrepeat_2, C-terminal subrepeat of
tandem repeat unit 8 of reelin and related proteins.
Reelin is an extracellular glycoprotein involved in
neuronal development, specifically in the brain cortex.
It contains 8 tandemly repeated units, each of which is
composed of two highly similar subrepeats and a central
EGF domain. This model characterizes the C-terminal
subrepeat, which directly contacts the N-terminal
subrepeat and the EGF domain in a compact arrangement.
Consecutive reelin repeat units are packed together to
form an overall rod-like molecular structure. Reelin
repeats 5 and 6 are reported to interact with neuronal
receptors, the apolipoprotein E receptor 2 (ApoER2) and
the very-low-density lipoprotein receptor (VLDLR),
triggering a signaling cascade upon binding and
subsequent tyrosine phosphorylation of the cytoplasmic
disabled-1 (Dab1).
Length = 161
Score = 27.1 bits (60), Expect = 3.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 72 HMNSKEKRESVSRE-DLARATLVTITNNIGSIARMSAINENIN 113
+ N R++V+ E DL RA+ + IGS ++ + N N++
Sbjct: 43 YFNGCGIRQAVTVELDLTRASKIMFVLQIGSRSQTDSCNINLS 85
>gnl|CDD|217710 pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family
includes enzymes that ADP-ribosylations, for example
ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves
ADP-ribose-L-arginine. The family also includes
dinitrogenase reductase activating glycohydrolase. Most
surprisingly the family also includes jellyfish
crystallins, these proteins appear to have lost the
presumed active site residues.
Length = 284
Score = 27.3 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 22 LGLCCLLTGCNSFEEAIELATS--GDN 46
L LL + FEEA+ LA + GD
Sbjct: 234 AALYALLRATDDFEEALLLAVNLGGDT 260
>gnl|CDD|107333 cd06338, PBP1_ABC_ligand_binding_like_5, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT); however their ligand
specificity has not been determined experimentally.
Length = 345
Score = 27.2 bits (61), Expect = 5.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 34 FEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFG 71
+EA+E A S D V + ++ F G F
Sbjct: 297 LQEAVERAGSLDPAAVRDALAS---NDFDTFYGPIKFD 331
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 27.0 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 71 GHMNSKE---KRESVSREDLARATLVTITNNIGSI 102
G + S++ K E+V+ + L RA V IT +I
Sbjct: 298 GQVISEDLGIKLENVTLDMLGRAKRVLITKENTTI 332
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 26.5 bits (59), Expect = 9.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 11 VLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDN 46
+L+ LGGGTF + L G FE L+T+GD
Sbjct: 185 ILVFDLGGGTF-DVSILEIGDGVFE---VLSTAGDT 216
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,301,528
Number of extensions: 846204
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 24
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)