RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6720
(182 letters)
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 136 bits (344), Expect = 2e-41
Identities = 109/145 (75%), Positives = 125/145 (86%), Gaps = 7/145 (4%)
Query: 14 TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
TSLGGGTFLGLCCLLTGC +FEEA+E+A GD+T VDKLV+DIYGG YE G+
Sbjct: 55 TSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYE-RFGLQGSAVA 113
Query: 68 FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
SFG+M SKEKR+S+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +
Sbjct: 114 SSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMV 173
Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
SMKLLAYAMD+WSKG KALFLEHE
Sbjct: 174 SMKLLAYAMDFWSKGQLKALFLEHE 198
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 68.1 bits (165), Expect = 9e-15
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%)
Query: 15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSY--ERFLGMFSFGH 72
GGG GL LL+ +++ ++A GD +D VR IY + +
Sbjct: 118 GTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFG 177
Query: 73 MNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLL 132
+ + A + + + ++A A +V++G+ N + K++
Sbjct: 178 HVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVV 237
Query: 133 AYAMDYWSKGTQKALFLEHE 152
DY K ++E+
Sbjct: 238 E---DYTVLRGCKPYYVENG 254
>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Length = 123
Score = 27.3 bits (60), Expect = 0.53
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
YAMDYW +GT
Sbjct: 103 YAMDYWGQGTT 113
>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Length = 119
Score = 27.4 bits (60), Expect = 0.63
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 133 AYAMDYWSKGTQ 144
AYAMDYW +GT
Sbjct: 103 AYAMDYWGQGTS 114
>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
Length = 116
Score = 27.0 bits (59), Expect = 0.66
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
Y +DYW +GT
Sbjct: 101 YRLDYWGQGTT 111
>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
10090]}
Length = 127
Score = 27.4 bits (60), Expect = 0.68
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
YAMDYW +GT
Sbjct: 107 YAMDYWGQGTT 117
>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 125
Score = 27.0 bits (59), Expect = 0.72
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
YAMDYW +GT
Sbjct: 110 YAMDYWGQGTT 120
>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 127
Score = 27.0 bits (59), Expect = 0.84
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
Y MD W KGT
Sbjct: 112 YYMDVWGKGTT 122
>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 124
Score = 27.0 bits (59), Expect = 0.86
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
YAMDYW +GT
Sbjct: 109 YAMDYWGQGTL 119
>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 117
Score = 26.6 bits (58), Expect = 0.93
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
Y MDYW +GT
Sbjct: 104 YTMDYWGQGTS 114
>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 120
Score = 26.6 bits (58), Expect = 0.94
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
YAMDYW +GT
Sbjct: 105 YAMDYWGQGTL 115
>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 120
Score = 26.6 bits (58), Expect = 0.95
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 134 YAMDYWSKGTQ 144
Y+MDYW +GT
Sbjct: 105 YSMDYWGQGTS 115
>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 132
Score = 26.7 bits (58), Expect = 1.0
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
AMD W +G
Sbjct: 117 NAMDVWGQGIT 127
>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 6 [TaxId:
10090]}
Length = 123
Score = 26.6 bits (58), Expect = 1.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
AMD+W +GT
Sbjct: 108 SAMDHWGQGTS 118
>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
9606]}
Length = 127
Score = 26.6 bits (58), Expect = 1.2
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
+ DYW +GT
Sbjct: 111 FGPDYWGQGTP 121
>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 126
Score = 26.6 bits (58), Expect = 1.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
Y +DYW +GT
Sbjct: 106 YVLDYWGQGTT 116
>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Length = 121
Score = 26.6 bits (58), Expect = 1.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
YAM YW +GT
Sbjct: 106 YAMAYWGQGTS 116
>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
9606]}
Length = 126
Score = 26.2 bits (57), Expect = 1.3
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
A D W +GT
Sbjct: 111 VAFDIWGQGTM 121
>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 4 [TaxId:
9606]}
Length = 131
Score = 26.2 bits (57), Expect = 1.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
Y MD W KGT
Sbjct: 116 YYMDVWGKGTT 126
>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 122
Score = 26.2 bits (57), Expect = 1.4
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
Y DYW +G
Sbjct: 107 YYFDYWGQGAT 117
>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 103
Score = 25.9 bits (56), Expect = 1.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
Y DYW +GT
Sbjct: 92 YYFDYWGQGTT 102
>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 133
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
Y MD W +GT
Sbjct: 118 YDMDVWGQGTT 128
>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 124
Score = 26.2 bits (57), Expect = 1.5
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 133 AYAMDYWSKGTQ 144
A A D+W +GT
Sbjct: 108 ADAFDFWGQGTL 119
>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 6 [TaxId:
10090]}
Length = 126
Score = 26.3 bits (57), Expect = 1.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
Y D W +GT
Sbjct: 111 YYFDNWGQGTT 121
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 25.1 bits (55), Expect = 1.7
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 40 LATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMN---SKEKRESVSREDLARA 90
L +V + + E + + R++V ED+ A
Sbjct: 11 LIRKAGAERVSEQAAKVLAEYLEEYAIEIA-KKAVEFARHAGRKTVKVEDIKLA 63
>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 125
Score = 25.9 bits (56), Expect = 1.7
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 134 YAMDYWSKGTQ 144
D W GT
Sbjct: 108 DPFDAWGPGTV 118
>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 117
Score = 25.8 bits (56), Expect = 1.7
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
A D W +GT
Sbjct: 102 DAFDIWGQGTM 112
>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 124
Score = 25.9 bits (56), Expect = 1.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
+ DYW +GTQ
Sbjct: 111 SSYDYWGQGTQ 121
>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh
{Llama (Lama glama) [TaxId: 9844]}
Length = 107
Score = 25.8 bits (56), Expect = 1.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
Y YW +GTQ
Sbjct: 92 YFRSYWGQGTQ 102
>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH
{Engineered (including hybrid species)}
Length = 121
Score = 25.8 bits (56), Expect = 1.9
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
+ DYW +GT
Sbjct: 106 PSFDYWGQGTL 116
>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 119
Score = 25.8 bits (56), Expect = 2.0
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
A + W +GT
Sbjct: 104 NAFNVWGQGTL 114
>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 127
Score = 25.8 bits (56), Expect = 2.1
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
A +W +GT
Sbjct: 112 GAFAHWGQGTL 122
>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 116
Score = 25.8 bits (56), Expect = 2.1
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 133 AYAMDYWSKGTQ 144
A +D W +G+
Sbjct: 101 AGGIDVWGQGSL 112
>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh
{Llama (Lama glama) [TaxId: 9844]}
Length = 127
Score = 25.9 bits (56), Expect = 2.2
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
+YW +GTQ
Sbjct: 114 NNWNYWGQGTQ 124
>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 130
Score = 25.9 bits (56), Expect = 2.2
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
+ D W +GT
Sbjct: 115 WYFDLWGRGTL 125
>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 122
Score = 25.5 bits (55), Expect = 2.4
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
DYW +GT
Sbjct: 107 SEFDYWGQGTL 117
>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 120
Score = 25.5 bits (55), Expect = 2.5
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
+YW +GT
Sbjct: 105 IEFEYWGQGTL 115
>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 117
Score = 25.4 bits (55), Expect = 2.6
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
Y DYW +G
Sbjct: 103 YYGDYWGQGAS 113
>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 120
Score = 25.5 bits (55), Expect = 2.6
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
+ +YW +GT
Sbjct: 105 HYWNYWGQGTL 115
>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId:
10090]}
Length = 118
Score = 25.4 bits (55), Expect = 2.6
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 134 YAMDYWSKGTQ 144
D W GT
Sbjct: 103 RYFDVWGAGTT 113
>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 26.1 bits (57), Expect = 2.7
Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 83 SREDLARATLVTITNNIGSIARM--SAINENINKVVFVGNFLRVNPISMKLLAYAM 136
++LAR LVT+ ++ + ++ + ++ + + R N ++ K++ +
Sbjct: 30 QWDELARV-LVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGNSLASKIMTFCF 84
>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 126
Score = 25.5 bits (55), Expect = 2.8
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
YW +GTQ
Sbjct: 112 NYFSYWGQGTQ 122
>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId:
10090]}
Length = 120
Score = 25.5 bits (55), Expect = 2.8
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
D W +GT
Sbjct: 106 TYFDVWGQGTT 116
>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 130
Score = 25.4 bits (55), Expect = 2.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
D+W +GT
Sbjct: 115 GFFDFWGQGTL 125
>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId:
10090]}
Length = 118
Score = 25.4 bits (55), Expect = 2.8
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
YW +GT
Sbjct: 103 EGFAYWGQGTL 113
>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 4 [TaxId:
10090]}
Length = 118
Score = 25.4 bits (55), Expect = 2.8
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 134 YAMDYWSKGTQ 144
D W GT
Sbjct: 103 QYFDVWGAGTT 113
>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable
domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 121
Score = 25.4 bits (55), Expect = 2.8
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
DYW +GT
Sbjct: 105 DHFDYWGQGTM 115
>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 118
Score = 25.4 bits (55), Expect = 2.9
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 134 YAMDYWSKGTQ 144
D W GT
Sbjct: 103 QYFDVWGAGTT 113
>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 119
Score = 25.5 bits (55), Expect = 2.9
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 134 YAMDYWSKGTQ 144
+DYW +GT
Sbjct: 104 SYVDYWGQGTT 114
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 26.0 bits (55), Expect = 3.1
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 155 IIGIFDH--WTSHPAFIDSYKPGVDFI 179
I + D TSHP +++ + DF
Sbjct: 29 NIAVLDTGVNTSHPDLVNNVEQCKDFT 55
>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 1 [TaxId:
10090]}
Length = 122
Score = 25.0 bits (54), Expect = 3.4
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
YW +GT
Sbjct: 107 ERFSYWGQGTL 117
>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 128
Score = 25.1 bits (54), Expect = 3.4
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
+ +W +GT
Sbjct: 113 GFLKHWGQGTL 123
>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 117
Score = 25.0 bits (54), Expect = 3.7
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 133 AYAMDYWSKGTQ 144
A DYW +GT
Sbjct: 101 AAYFDYWGQGTL 112
>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
10090]}
Length = 119
Score = 25.1 bits (54), Expect = 3.9
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 134 YAMDYWSKGTQ 144
W +GT
Sbjct: 104 GGAGSWGQGTL 114
>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 117
Score = 25.0 bits (54), Expect = 4.0
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
DYW GT
Sbjct: 102 NYFDYWGPGTM 112
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 25.5 bits (54), Expect = 4.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 155 IIGIFDH--WTSHPAFIDSYKPGVDFILNG 182
++ I D +HP +Y PG F +N
Sbjct: 40 VVSILDDGIEKNHPDLAGNYDPGASFDVND 69
>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH
{Mouse (Mus musculus), cluster 1 [TaxId: 10090]}
Length = 120
Score = 24.7 bits (53), Expect = 4.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
YW +GT
Sbjct: 106 PWFAYWGQGTL 116
>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh
{Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 119
Score = 24.7 bits (53), Expect = 4.9
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
+ W +GTQ
Sbjct: 105 CPIIPWGQGTQ 115
>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 116
Score = 24.7 bits (53), Expect = 5.0
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
YW +GT
Sbjct: 101 GWFPYWGQGTL 111
>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 114
Score = 24.7 bits (53), Expect = 5.1
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
+ +W GT
Sbjct: 99 HRFVHWGHGTL 109
>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 24.7 bits (53), Expect = 5.2
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
Y + S GT
Sbjct: 104 YLDNEKSNGTI 114
>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh
{Llama (Lama glama) [TaxId: 9844]}
Length = 135
Score = 24.6 bits (53), Expect = 5.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 134 YAMDYWSKGTQ 144
A+D W +GTQ
Sbjct: 102 GALDAWGQGTQ 112
>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 115
Score = 24.3 bits (52), Expect = 5.7
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 134 YAMDYWSKGTQ 144
Y YW +GT
Sbjct: 100 YDGVYWGQGTT 110
>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 121
Score = 24.3 bits (52), Expect = 6.0
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
W +GTQ
Sbjct: 106 RTYGQWGQGTQ 116
>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo
sapiens), delta-chain [TaxId: 9606]}
Length = 123
Score = 24.4 bits (52), Expect = 6.1
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 132 LAYAMDYWSKGTQ 144
L + + GT+
Sbjct: 106 LGKKIKVFGPGTK 118
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein
Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 24.4 bits (53), Expect = 6.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 32 NSFEEAIELATSGDNTKVD 50
+ E I AT+ N ++D
Sbjct: 7 ETLEARINRATNPLNKELD 25
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1
(KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 23.6 bits (51), Expect = 6.5
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 26 CLLTGCNSFEEAIELATSGDNT 47
+ +EEA+++A N
Sbjct: 56 VSINSQGEYEEALKMAVKQGNQ 77
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 25.0 bits (53), Expect = 6.5
Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 56 IYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKV 115
+ G + + + + +M KE + + + + +T+ I + I+ +
Sbjct: 201 LKGITRDVVIACANEINMPVKEIP--FTTHEALKMDELFVTSTTSEITPVIEIDGKL--- 255
Query: 116 VFVGNFLRVNPISMKL 131
+ + +V + KL
Sbjct: 256 --IRDG-KVGEWTRKL 268
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 24.0 bits (52), Expect = 8.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 32 NSFEEAIELATSGDNTKVD 50
+SF + +E ATS + D
Sbjct: 4 SSFCKNLENATSHLRLEPD 22
>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo
sapiens), gamma-chain [TaxId: 9606]}
Length = 120
Score = 24.1 bits (51), Expect = 8.6
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 134 YAMDYWSKGTQ 144
+ KGT+
Sbjct: 104 TDKLIFGKGTR 114
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 24.5 bits (52), Expect = 8.9
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 45 DNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIAR 104
D R + + + + + +SRE L A V ++ I
Sbjct: 201 DGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITP 260
Query: 105 MSAINENINKVVFVGNFLRVNPISMKLLAYAMD 137
+ +++ VG R P++ ++
Sbjct: 261 VRSVDGIQ-----VGEG-RCGPVTKRIQQAFFG 287
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,461
Number of extensions: 30620
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 74
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)