RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6726
(184 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 110 bits (276), Expect = 1e-28
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLT 64
+ EEID V+G P+Y+DL + YL+ VIKETLRL P P L+ R + +D ++ G
Sbjct: 298 LREEIDEVIGDKR--SPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYL 355
Query: 65 IPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
IP G V++++YALHRDP+ +P+P FDP R+
Sbjct: 356 IPKGTLVIVNLYALHRDPEVFPNPEEFDPERF 387
Score = 63.8 bits (156), Expect = 3e-12
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLT 179
+ EEID V+G P+Y+DL + YL+ VIKETLRL P P L+ R + +D ++ G
Sbjct: 298 LREEIDEVIGDKR--SPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYL 355
Query: 180 IPA 182
IP
Sbjct: 356 IPK 358
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 82.1 bits (203), Expect = 1e-18
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 24 YEDLCQ---LEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHR 80
L LE V++ETLRL+P PL R ED L G IPAG VL+SI A +R
Sbjct: 270 LAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANR 329
Query: 81 DPKYYPSPGRFDPSRW 96
DP+ +P P FDP R+
Sbjct: 330 DPEVFPDPDEFDPERF 345
Score = 40.9 bits (96), Expect = 2e-04
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 139 YEDLCQ---LEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
L LE V++ETLRL+P PL R ED L G IPA
Sbjct: 270 LAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPA 316
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 78.2 bits (193), Expect = 2e-17
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 9 EIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLI-GRHIDEDFILDGLTIPA 67
EI V G + EDL L YL V ETLR + PL+ R + ED L G IPA
Sbjct: 302 EIREVCGDERV---TEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPA 358
Query: 68 GVTVLISIYALHRDPKYYPSPGRFDPSRWMRFRF 101
G + I+IY + D K + +P +DP R++ ++
Sbjct: 359 GTQIAINIYGCNMDKKRWENPEEWDPERFLGEKY 392
Score = 48.6 bits (116), Expect = 4e-07
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 124 EIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLI-GRHIDEDFILDGLTIPA 182
EI V G + EDL L YL V ETLR + PL+ R + ED L G IPA
Sbjct: 302 EIREVCGDERV---TEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPA 358
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 77.5 bits (191), Expect = 5e-17
Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
Query: 3 YPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDED 57
+P +L EE+D V+GR+ S DL QL YL+ VIKET RL P+ PL + R E+
Sbjct: 327 HPDILKKAQEELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEE 384
Query: 58 FILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
++G IP G T+L++++A+ RDP+ +P P F P R++
Sbjct: 385 CEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFL 424
Score = 46.7 bits (111), Expect = 2e-06
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EE+D V+GR+ S DL QL YL+ VIKET RL P+ PL + R E+ ++G IP
Sbjct: 336 EELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIP 393
Query: 182 A 182
Sbjct: 394 K 394
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 76.0 bits (187), Expect = 2e-16
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 8 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIP 66
EE+DRVL P+YED+ +L+YL I E++RL+P P LI R ED + G +
Sbjct: 317 EELDRVLQ---GRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVN 373
Query: 67 AGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
AG ++IS+Y +HR P+ + F P R+
Sbjct: 374 AGQDIMISVYNIHRSPEVWERAEEFVPERF 403
Score = 51.3 bits (123), Expect = 4e-08
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIP 181
EE+DRVL P+YED+ +L+YL I E++RL+P P LI R ED + G +
Sbjct: 317 EELDRVLQ---GRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVN 373
Query: 182 A 182
A
Sbjct: 374 A 374
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 74.2 bits (182), Expect = 7e-16
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 9/99 (9%)
Query: 3 YPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDED 57
PSV+ EE+D VLG P+ ED+ +L+Y VI E+LRL+P P LI R ++ D
Sbjct: 421 EPSVVAKLQEEVDSVLG---DRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEND 477
Query: 58 FILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
+L G I G + IS++ LHR PK++ +F+P RW
Sbjct: 478 -MLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERW 515
Score = 44.1 bits (104), Expect = 1e-05
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFI 174
EE+D VLG P+ ED+ +L+Y VI E+LRL+P P LI R ++ D +
Sbjct: 430 EEVDSVLG---DRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDML 479
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 71.8 bits (176), Expect = 5e-15
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 8 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIP 66
EE+D V+GRN S DL L YL CV++ET R+ PA P LI ++G IP
Sbjct: 335 EELDSVVGRNRMVQES--DLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIP 392
Query: 67 AGVTVLISIYALHRDPKYYPSPGRFDPSR 95
A V I+ + L R+ K + F P R
Sbjct: 393 AKTRVFINTHGLGRNTKIWDDVEEFRPER 421
Score = 49.1 bits (117), Expect = 3e-07
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIP 181
EE+D V+GRN S DL L YL CV++ET R+ PA P LI ++G IP
Sbjct: 335 EELDSVVGRNRMVQES--DLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIP 392
Query: 182 A 182
A
Sbjct: 393 A 393
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 71.4 bits (175), Expect = 6e-15
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
V +E+ V+G N S DL +L YL+C +KETLRL P PL+ ED + G I
Sbjct: 341 VQQELADVVGLNRRVEES--DLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFI 398
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
P V+I+ +A+ RD + P F PSR+++
Sbjct: 399 PKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLK 431
Score = 47.2 bits (112), Expect = 1e-06
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
V +E+ V+G N S DL +L YL+C +KETLRL P PL+ ED + G I
Sbjct: 341 VQQELADVVGLNRRVEES--DLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFI 398
Query: 181 PA 182
P
Sbjct: 399 PK 400
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 67.8 bits (166), Expect = 1e-13
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDP 82
+ +D+ ++EYL VI ETLRL + + R D ++G TIP G VL +H DP
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 83 KYYPSPGRFDPSRWMRF 99
+ YP+P FDPSRW +
Sbjct: 403 EVYPNPKEFDPSRWDNY 419
Score = 35.1 bits (81), Expect = 0.013
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 138 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIP 181
+ +D+ ++EYL VI ETLRL + + R D ++G TIP
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIP 386
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 66.8 bits (163), Expect = 2e-13
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 4 PSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDF 58
PS+L EE+D+V+GRN S DL +L YL+ + KE+ R P+ PL + R +
Sbjct: 320 PSILKRAHEEMDQVIGRNRRLVES--DLPKLPYLQAICKESFRKHPSTPLNLPRVSTQAC 377
Query: 59 ILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
++G IP + ++I+A+ RDP + +P F P R++
Sbjct: 378 EVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFL 416
Score = 43.7 bits (103), Expect = 2e-05
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EE+D+V+GRN S DL +L YL+ + KE+ R P+ PL + R + ++G IP
Sbjct: 328 EEMDQVIGRNRRLVES--DLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIP 385
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 65.5 bits (160), Expect = 6e-13
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHID-EDFILDGLT 64
+ +E+D VLG + + D +L YL+ V+KETLRL A PL+ H++ ED L G
Sbjct: 330 LRDELDTVLGPG--NQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYD 387
Query: 65 IPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
IPA +L++ + L +P+ + +P F P R++
Sbjct: 388 IPAESKILVNAWWLANNPELWKNPEEFRPERFL 420
Score = 47.0 bits (112), Expect = 1e-06
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHID-EDFILDGLT 179
+ +E+D VLG + + D +L YL+ V+KETLRL A PL+ H++ ED L G
Sbjct: 330 LRDELDTVLGPG--NQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYD 387
Query: 180 IPA 182
IPA
Sbjct: 388 IPA 390
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 65.2 bits (159), Expect = 8e-13
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
V E+ V G T PS + L +L L VI E+LRL+P A L+ R ED L L I
Sbjct: 353 VRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHI 409
Query: 66 PAGVTVLISIYALHRDPKYY-PSPGRFDPSRWMRFRF 101
P G+++ I + A+H + + F+P R+ F
Sbjct: 410 PKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF 446
Score = 55.2 bits (133), Expect = 2e-09
Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 99 FRFRGDKTSAPLLELPLI-----PT--SFVLEEIDRVLGRNTTHCPSYEDLCQLEYLECV 151
F F G +T+A LL L+ PT V E+ V G T PS + L +L L V
Sbjct: 324 FFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGET---PSVDHLSKLTLLNMV 380
Query: 152 IKETLRLFPAAPLIGRHIDEDFILDGLTIP 181
I E+LRL+P A L+ R ED L L IP
Sbjct: 381 INESLRLYPPATLLPRMAFEDIKLGDLHIP 410
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 65.1 bits (159), Expect = 1e-12
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 32 YLECVIKETLRLFPAAPL-IGRHIDED-FILDGLTIPAGVTVLISIYALHRDPKYYPSPG 89
Y +IKETLR P +P + R D I G IP +LI+ Y+L R+ KY+ +P
Sbjct: 344 YTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPE 403
Query: 90 RFDPSRWM 97
+FDPSR++
Sbjct: 404 QFDPSRFL 411
Score = 29.7 bits (67), Expect = 0.78
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 147 YLECVIKETLRLFPAAPL-IGRHIDED-FILDGLTIP 181
Y +IKETLR P +P + R D I G IP
Sbjct: 344 YTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIP 380
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 61.0 bits (148), Expect = 3e-11
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDP 82
++ED ++E+ +CVI ETLRL + R +D G IP+G VL I A+H D
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 83 KYYPSPGRFDPSRWMRFRFRGDKTSA 108
Y P F+P RW + RG + +
Sbjct: 396 SLYDQPQLFNPWRWQQNNNRGGSSGS 421
Score = 33.3 bits (76), Expect = 0.053
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 138 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIP 181
++ED ++E+ +CVI ETLRL + R +D G IP
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIP 379
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 58.5 bits (141), Expect = 2e-10
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 7 LEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHID-EDFILDGLTI 65
+EEIDRV+G+ S D+ +L Y++ +I+E RL P A H+ D + G I
Sbjct: 365 MEEIDRVVGKERFVQES--DIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHI 422
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
P G VL+S Y L R+PK + P F P R
Sbjct: 423 PKGSQVLLSRYGLGRNPKVWSDPLSFKPER 452
Score = 34.2 bits (78), Expect = 0.029
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 122 LEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHID-EDFILDGLTI 180
+EEIDRV+G+ S D+ +L Y++ +I+E RL P A H+ D + G I
Sbjct: 365 MEEIDRVVGKERFVQES--DIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHI 422
Query: 181 P 181
P
Sbjct: 423 P 423
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 57.8 bits (139), Expect = 3e-10
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 1 MVYPSVLE----EIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAP-LIGRHID 55
M YP VL+ E+ + + + +D+ L Y ++KETLR+ P P LI R
Sbjct: 317 MKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACI 376
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYY-PSPGRFDPSRWM 97
+D + G IPAG TV ++ +A+ RD K + P+P F P R++
Sbjct: 377 QDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFL 419
Score = 32.8 bits (74), Expect = 0.096
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 140 EDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIPA 182
+D+ L Y ++KETLR+ P P LI R +D + G IPA
Sbjct: 345 DDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPA 388
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 57.1 bits (138), Expect = 5e-10
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL-DGLTIPAGVTVLISIYALHRD 81
+Y+ L +L+YL VI ETLRL+PA P + I ED +L DG + AG V Y++ R
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 82 PKYY-PSPGRFDPSRWMR 98
+ P F P RW++
Sbjct: 424 EYNWGPDAASFKPERWIK 441
Score = 45.2 bits (107), Expect = 6e-06
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 138 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL-DGLTIPA 182
+Y+ L +L+YL VI ETLRL+PA P + I ED +L DG + A
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKA 409
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 55.1 bits (133), Expect = 2e-09
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 2 VYPSVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL- 60
V ++ EE DRV+G N S+E++ ++ YL + E++RLFP + ED +L
Sbjct: 326 VASAIREEADRVMGPNQE-AASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLP 384
Query: 61 DGLTIPAGVTVLISIYALHRDPKYY-PSPGRFDPSRWMR 98
DG + G V YA+ R + + P F P RW++
Sbjct: 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLK 423
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 119 SFVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFP 160
S + EE DRV+G N S+E++ ++ YL + E++RLFP
Sbjct: 328 SAIREEADRVMGPNQE-AASFEEMKEMHYLHAALYESMRLFP 368
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 50.7 bits (121), Expect = 9e-08
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 8 EEIDRVLGRNT-THCPSYEDLCQLEYLECVIKETLRLFPAAPLIG---RHIDEDFILDGL 63
EE +++ + ++ + D + + +CV+ ETLR+ A +IG R D + G
Sbjct: 306 EEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRV---ANIIGGIFRRAMTDIEVKGY 362
Query: 64 TIPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
TIP G V S A+H D +Y+ F+P RW
Sbjct: 363 TIPKGWKVFASFRAVHLDHEYFKDARTFNPWRW 395
Score = 27.6 bits (61), Expect = 3.8
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 110 LLELPLIPTSFVLEEIDRVLGRNT-THCPSYEDLCQLEYLECVIKETLRLFPAAPLIG-- 166
L E PL + + EE +++ + ++ + D + + +CV+ ETLR+ A +IG
Sbjct: 294 LTETPL-ALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRV---ANIIGGI 349
Query: 167 -RHIDEDFILDGLTIP 181
R D + G TIP
Sbjct: 350 FRRAMTDIEVKGYTIP 365
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 49.3 bits (117), Expect = 2e-07
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIPAGVTVLISIYALHRD 81
S ED+ L YL+ VIKE+LRL P P L+ R D + G IPA + ++ +A+ RD
Sbjct: 340 SEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRD 399
Query: 82 PKYY-PSPGRFDPSRWM 97
+ +P F P R+M
Sbjct: 400 TAAWGDNPNEFIPERFM 416
Score = 36.2 bits (83), Expect = 0.006
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 138 SYEDLCQLEYLECVIKETLRLFPAAP-LIGRHIDEDFILDGLTIPA 182
S ED+ L YL+ VIKE+LRL P P L+ R D + G IPA
Sbjct: 340 SEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPA 385
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 49.2 bits (117), Expect = 2e-07
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDP 82
++ED ++ VI+ETLR+ R ED +G IP G VL +H
Sbjct: 319 TWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSA 378
Query: 83 KYYPSPGRFDPSRW 96
+ PG+FDPSR+
Sbjct: 379 DIFSDPGKFDPSRF 392
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 48.1 bits (114), Expect = 6e-07
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 7 LEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHI-DEDFILDGLTI 65
L+E+D V+G++ S D+ L YL+ +ET R+ P+A + H+ +D L G I
Sbjct: 352 LKELDEVVGKDRLVQES--DIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFI 409
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
P G + + L R+PK + P ++P R ++
Sbjct: 410 PKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQ 442
Score = 34.2 bits (78), Expect = 0.033
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 122 LEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHI-DEDFILDGLTI 180
L+E+D V+G++ S D+ L YL+ +ET R+ P+A + H+ +D L G I
Sbjct: 352 LKELDEVVGKDRLVQES--DIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFI 409
Query: 181 P 181
P
Sbjct: 410 P 410
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 47.8 bits (114), Expect = 7e-07
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 25 EDLCQLEYL-----ECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
E L +Y+ + VI ETLR+ + R +D + G IP G VL ++H
Sbjct: 304 EPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVH 363
Query: 80 RDPKYYPSPGRFDPSRWMR 98
D + Y +P +F+P RW
Sbjct: 364 LDEENYDNPYQFNPWRWQE 382
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 45.2 bits (107), Expect = 7e-06
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 24 YEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPK 83
+ D + + VI ET RL + R +D L+G IP G + + ++ DP
Sbjct: 320 WNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPF 379
Query: 84 YYPSPGRFDPSRWM 97
YP P F+P RW+
Sbjct: 380 LYPDPMTFNPWRWL 393
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 41.1 bits (96), Expect = 1e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 23 SYEDLCQLEYLECVIKETLRLFPAAPLIGRH-IDEDFILDGLTIPAGVTVLISIYALHRD 81
S ED+ ++ YL+ V+ E LR P A + H ED + G IP G TV + + RD
Sbjct: 359 SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRD 418
Query: 82 PKYYPSPGRFDPSRWM 97
+ + P F P R++
Sbjct: 419 EREWERPMEFVPERFL 434
Score = 26.5 bits (58), Expect = 9.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 138 SYEDLCQLEYLECVIKETLRLFPAAPLIGRH-IDEDFILDGLTIP 181
S ED+ ++ YL+ V+ E LR P A + H ED + G IP
Sbjct: 359 SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIP 403
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 38.1 bits (88), Expect = 0.001
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 YPSVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRH-IDEDFILD 61
+P V+ +I + NT EDL +L YL + E++RL+P P + D +
Sbjct: 331 HPQVMAKIRHEI--NTKFDN--EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPS 386
Query: 62 GLTIPAGVTVLISIYALHRDPKYYPSPGR-FDPSRWM 97
G + A ++I IYAL R + F P RW+
Sbjct: 387 GHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWI 423
Score = 28.0 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 132 NTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL 164
NT EDL +L YL + E++RL+P P
Sbjct: 343 NTKFDN--EDLEKLVYLHAALSESMRLYPPLPF 373
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine
nucleotide exchange factor (GEF) composed of five
different subunits (alpha, beta, gamma, delta and
epsilon). eIF2B is important for regenerating GTP-bound
eIF2 during the initiation process. This event is
obligatory for eIF2 to bind initiator methionyl-tRNA,
forming the ternary initiation complex. The eIF-2B
epsilon subunit contains an N-terminal domain that
resembles a dinucleotide-binding Rossmann fold, a
central LbH domain containing 4 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal
domain of unknown function that is present in eIF-4
gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma
subunits form the catalytic subcomplex of eIF-2B, which
binds eIF2 and catalyzes guanine nucleotide exchange.
Length = 79
Score = 26.4 bits (59), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 50 IGR--HIDEDFILDGLTIPAGVTVLISIYA 77
IG+ ID +I D +TI G T+ SI A
Sbjct: 25 IGKNVVIDNSYIWDDVTIEDGCTIHHSIVA 54
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY
subdomain, is found at the C-terminus of the RING
finger protein RNF135 (also known as Riplet/RNF135),
which ubiquitinates RIG-I (retinoic acid-inducible
gene-I) to promote interferon-beta induction during the
early phase of viral infection. Normally, RIG-I is
activated by TRIM25 in response to viral infection,
leading to activation of the RIG-I signaling pathway,
thus resulting in type I interferon production to limit
viral replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 26.7 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
P V +S Y SP RF S+ M
Sbjct: 16 PTSRRVTVS----RHPQAYAWSPERFSISQVM 43
>gnl|CDD|176802 cd08968, MeNeil2_N, N-terminal domain of metazoan Nei-like
glycosylase 2 (NEIL2). This family contains the
N-terminal domain of the metazoan protein Neil2. It
belongs to the FpgNei_N, [N-terminal domain of Fpg
(formamidopyrimidine-DNA glycosylase, MutM)_Nei
(endonuclease VIII)] domain superfamily. DNA
glycosylases maintain genome integrity by recognizing
base lesions created by ionizing radiation, alkylating
or oxidizing agents, and endogenous reactive oxygen
species. They initiate the base-excision repair process,
which is completed with the help of enzymes such as
phosphodiesterases, AP endonucleases, DNA polymerases
and DNA ligases. DNA glycosylases cleave the N-glycosyl
bond between the sugar and the damaged base, creating an
AP (apurinic/apyrimidinic) site. Most FpgNei DNA
glycosylases use their N-terminal proline residue as the
key catalytic nucleophile, and the reaction proceeds via
a Schiff base intermediate. NEIL2 repairs
5-hydroxyuracil (5-OHU) and other oxidized derivatives
of cytosine, but it shows preference for DNA bubble
structures. In addition to this MeNeil2_N domain, NEIL2
contains a helix-two turn-helix (H2TH) domain and a
characteristic CHCC zinc finger motif. Neil2 is one of
three homologs found in eukaryotes.
Length = 126
Score = 26.3 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 78 LHRDPKYYPSPGRFDPSRWMRFRF 101
LH D P R D RW+RF F
Sbjct: 54 LHFDLDEEMGPDR-DAGRWLRFHF 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.145 0.453
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,202,120
Number of extensions: 971416
Number of successful extensions: 1128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 64
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.3 bits)