RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6726
(184 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 140 bits (355), Expect = 3e-40
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+ E+D V+G +EDL +L+YL V+KE+LRL+P A R ++E+ ++DG+ +
Sbjct: 280 LQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRV 337
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
P +L S Y + R Y+ P F+P R+
Sbjct: 338 PGNTPLLFSTYVMGRMDTYFEDPLTFNPDRF 368
Score = 90.4 bits (225), Expect = 8e-22
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+ E+D V+G +EDL +L+YL V+KE+LRL+P A R ++E+ ++DG+ +
Sbjct: 280 LQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRV 337
Query: 181 PA 182
P
Sbjct: 338 PG 339
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 133 bits (337), Expect = 2e-37
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+L+E+ VL N T P EDL + YL+ +KE++RL P+ P R +D+ +L +
Sbjct: 320 LLQEVQSVLPDNQT--PRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYAL 377
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
P G + ++ L + +F P RW++
Sbjct: 378 PKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQ 410
Score = 84.7 bits (210), Expect = 9e-20
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+L+E+ VL N T P EDL + YL+ +KE++RL P+ P R +D+ +L +
Sbjct: 320 LLQEVQSVLPDNQT--PRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYAL 377
Query: 181 PA 182
P
Sbjct: 378 PK 379
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 130 bits (329), Expect = 3e-36
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+ E+ + L + L+ IKETLRL P + + R++ D +L I
Sbjct: 312 LRAEVLAARHQAQG--DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLRDYMI 369
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMRFRFRGD 104
PA V ++IYAL R+P ++ P FDP+RW+
Sbjct: 370 PAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKNIT 408
Score = 81.2 bits (201), Expect = 2e-18
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+ E+ + L + L+ IKETLRL P + + R++ D +L I
Sbjct: 312 LRAEVLAARHQAQG--DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLRDYMI 369
Query: 181 PA 182
PA
Sbjct: 370 PA 371
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 130 bits (328), Expect = 4e-36
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+++EI V+G +D+ +L+ +E I E++R P L+ R ED ++DG +
Sbjct: 332 IIKEIQTVIGERD---IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGYPV 388
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
G ++++I +HR +++P P F +
Sbjct: 389 KKGTNIILNIGRMHR-LEFFPKPNEFTLENF 418
Score = 88.9 bits (221), Expect = 3e-21
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+++EI V+G +D+ +L+ +E I E++R P L+ R ED ++DG +
Sbjct: 332 IIKEIQTVIGERD---IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGYPV 388
Query: 181 PA 182
Sbjct: 389 KK 390
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 129 bits (326), Expect = 5e-36
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+ +E++ V G ++ED+ +L + VI E +RL PA ++ R + L G I
Sbjct: 300 IRDEVEAVTGGRP---VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRI 356
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
PAG ++ S YA+ RDPK Y FDP RW
Sbjct: 357 PAGADIIYSPYAIQRDPKSYDDNLEFDPDRW 387
Score = 77.7 bits (192), Expect = 2e-17
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+ +E++ V G ++ED+ +L + VI E +RL PA ++ R + L G I
Sbjct: 300 IRDEVEAVTGGRP---VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRI 356
Query: 181 PA 182
PA
Sbjct: 357 PA 358
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 127 bits (320), Expect = 3e-35
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
+ +EI+ + + ++ + E +E++R P ++ R + D + +
Sbjct: 292 LRKEIEEFPAQLNY----NNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVV 347
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMRFRF 101
P G + S H D + +P P R+DP R +
Sbjct: 348 PKGDIIACSPLLSHHDEEAFPEPRRWDPERDEKVEG 383
Score = 74.2 bits (183), Expect = 3e-16
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
+ +EI+ + + ++ + E +E++R P ++ R + D + +
Sbjct: 292 LRKEIEEFPAQLNY----NNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVV 347
Query: 181 PA 182
P
Sbjct: 348 PK 349
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 127 bits (320), Expect = 4e-35
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
E V G N +Y+ L L L+ IKETLRL P ++ R + G TI
Sbjct: 289 CYLEQKTVCGENLPP-LTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTI 347
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
P G V +S R + F+P R+
Sbjct: 348 PPGHQVCVSPTVNQRLKDSWVERLDFNPDRY 378
Score = 77.7 bits (192), Expect = 3e-17
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
E V G N +Y+ L L L+ IKETLRL P ++ R + G TI
Sbjct: 289 CYLEQKTVCGENLPP-LTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTI 347
Query: 181 PA 182
P
Sbjct: 348 PP 349
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 126 bits (319), Expect = 5e-35
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
V++E+D + G + S+ L Q+ LE V+KETLRL P ++ R +F + G I
Sbjct: 282 VIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRI 339
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
G V S +R P+ +P P F P+R+
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARY 370
Score = 76.6 bits (189), Expect = 5e-17
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
V++E+D + G + S+ L Q+ LE V+KETLRL P ++ R +F + G I
Sbjct: 282 VIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRI 339
Query: 181 PA 182
Sbjct: 340 HE 341
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 125 bits (315), Expect = 2e-34
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG--- 62
+ EEI + + E + Q+ + V+ E+LR+ P P +F ++
Sbjct: 303 LAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDA 362
Query: 63 -LTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
+ G + +DPK + P + P R++
Sbjct: 363 TFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFV 398
Score = 74.9 bits (184), Expect = 2e-16
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG--- 177
+ EEI + + E + Q+ + V+ E+LR+ P P +F ++
Sbjct: 303 LAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDA 362
Query: 178 -LTIPA 182
+
Sbjct: 363 TFEVKK 368
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 123 bits (312), Expect = 6e-34
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 8 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG-LTIP 66
EE RVL PSY+ + QL+Y+ V+ E LRL+P AP + ED +L G +
Sbjct: 292 EEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLE 348
Query: 67 AGVTVLISIYALHRDPKYYPS-PGRFDPSRWMRFRFR 102
G +++ I LHRD + F P R+
Sbjct: 349 KGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAI 385
Score = 78.5 bits (194), Expect = 1e-17
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG-LTIP 181
EE RVL PSY+ + QL+Y+ V+ E LRL+P AP + ED +L G +
Sbjct: 292 EEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLE 348
Query: 182 A 182
Sbjct: 349 K 349
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 123 bits (312), Expect = 7e-34
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 8 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 67
EEID VL P+Y+ + Q+EYL+ V+ ETLRLFP A + R +D ++G+ IP
Sbjct: 311 EEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPK 368
Query: 68 GVTVLISIYALHRDPKYYPSPGRFDPSRW 96
GV V+I YALHRDPKY+ P +F P R+
Sbjct: 369 GVVVMIPSYALHRDPKYWTEPEKFLPERF 397
Score = 70.3 bits (173), Expect = 1e-14
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
EEID VL P+Y+ + Q+EYL+ V+ ETLRLFP A + R +D ++G+ IP
Sbjct: 311 EEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPK 368
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 122 bits (307), Expect = 3e-33
Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 14/132 (10%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILD---- 61
+ EEI V+ N + + ++E + V+ E LR P +D +++
Sbjct: 321 LAEEIRSVIKSNGGE-LTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDA 379
Query: 62 GLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMRFRFRGDKTSAPLLELPLIPTSFV 121
+ AG + RDPK + F P RF G++ L + S
Sbjct: 380 AFKVKAGEMLYGYQPLATRDPKIFDRADEFVPE-----RFVGEEGEKL---LRHVLWSNG 431
Query: 122 LEEIDRVLG-RN 132
E +G +
Sbjct: 432 PETETPTVGNKQ 443
Score = 71.9 bits (176), Expect = 3e-15
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILD---- 176
+ EEI V+ N + + ++E + V+ E LR P +D +++
Sbjct: 321 LAEEIRSVIKSNGGE-LTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDA 379
Query: 177 GLTIPA 182
+ A
Sbjct: 380 AFKVKA 385
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 119 bits (300), Expect = 2e-32
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 2 VYPSVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILD 61
+ V +E +++ + E L ++ YL+ V++E LRL P R + +D
Sbjct: 276 IRERVRQEQNKLQLSQE---LTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQ 332
Query: 62 GLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMRFR 100
G P G V I H DP YP P +FDP R+
Sbjct: 333 GFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDG 371
Score = 69.6 bits (171), Expect = 1e-14
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
V +E +++ + E L ++ YL+ V++E LRL P R + +D G
Sbjct: 280 VRQEQNKLQLSQE---LTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHF 336
Query: 181 PA 182
P
Sbjct: 337 PK 338
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 109 bits (274), Expect = 2e-28
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 6 VLEEIDRVLGRNTTHCP--------SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDED 57
EE+ R L S +L L L+ +IKE+LRL A+ I R ED
Sbjct: 294 ATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTAKED 352
Query: 58 FILD----GLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
F L I + + +H DP+ YP P F R++
Sbjct: 353 FTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYL 396
Score = 61.6 bits (150), Expect = 9e-12
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 121 VLEEIDRVLGRNTTHCP--------SYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDED 172
EE+ R L S +L L L+ +IKE+LRL A+ I R ED
Sbjct: 294 ATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTAKED 352
Query: 173 FILD----GLTIPA 182
F L I
Sbjct: 353 FTLHLEDGSYNIRK 366
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 107 bits (268), Expect = 5e-28
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 25 EDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKY 84
+ Q +Y E ++E R +P P + +DF +G+ P G V++ +Y + D
Sbjct: 266 ALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAAT 325
Query: 85 YPSPGRFDPSRWM 97
+ P F P R+
Sbjct: 326 WADPQEFRPERFR 338
Score = 60.1 bits (146), Expect = 3e-11
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 118 TSFVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG 177
+ + + L + + Q +Y E ++E R +P P + +DF +G
Sbjct: 246 IAVYITFVAHALQTCSGI--RAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEG 303
Query: 178 LTIPA 182
+ P
Sbjct: 304 MAFPE 308
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 105 bits (263), Expect = 3e-27
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 29 QLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSP 88
E ++E R +P P +G + +DF+ + G +VL+ +Y + DP+ + P
Sbjct: 272 NSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHP 331
Query: 89 GRFDPSRWM 97
F P R+
Sbjct: 332 DEFRPERFA 340
Score = 56.6 bits (137), Expect = 5e-10
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 144 QLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E ++E R +P P +G + +DF+ +
Sbjct: 272 NSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKK 310
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 102 bits (257), Expect = 4e-26
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 6 VLEEIDRVLGRN-----TTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL 60
V E++ +L + T + L L+ V+ E+LRL AP I R + D +
Sbjct: 299 VRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTA-APFITREVVVDLAM 357
Query: 61 D-----GLTIPAGVTVLIS-IYALHRDPKYYPSPGRFDPSRWM 97
+ G +L+ + RDP+ Y P F +R++
Sbjct: 358 PMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFL 400
Score = 61.0 bits (148), Expect = 1e-11
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 121 VLEEIDRVLGRN-----TTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL 175
V E++ +L + T + L L+ V+ E+LRL AP I R + D +
Sbjct: 299 VRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTA-APFITREVVVDLAM 357
Query: 176 D-----GLTIPA 182
+
Sbjct: 358 PMADGREFNLRR 369
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 95.4 bits (238), Expect = 8e-24
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 65
V E + L +E LRL+P A ++ R ++ +L +
Sbjct: 247 VAESEEAALA--------------------AFQEALRLYPPAWILTRRLERPLLLGEDRL 286
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
P G T+++S Y R +P F P R+
Sbjct: 287 PPGTTLVLSPYVTQRLH--FPDGEAFRPERF 315
Score = 51.5 bits (124), Expect = 2e-08
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTI 180
V E + L +E LRL+P A ++ R ++ +L +
Sbjct: 247 VAESEEAALA--------------------AFQEALRLYPPAWILTRRLERPLLLGEDRL 286
Query: 181 PA 182
P
Sbjct: 287 PP 288
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 90.4 bits (225), Expect = 8e-22
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 4 PSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFI 59
P L EEI G H E + V+ ETLRL AA + R + +D
Sbjct: 284 PEALRAVREEIQ---GGK--HLRLEERQKNTPVFDSVLWETLRLTAAALIT-RDVTQDKK 337
Query: 60 L-----DGLTIPAGVTVLIS-IYALHRDPKYYPSPGRFDPSRWM 97
+ + G + + + DP+ + P F R++
Sbjct: 338 ICLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFL 381
Score = 51.9 bits (125), Expect = 2e-08
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 121 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFIL----- 175
V EEI G H E + V+ ETLRL AA + R + +D +
Sbjct: 290 VREEIQ---GGK--HLRLEERQKNTPVFDSVLWETLRLTAAALIT-RDVTQDKKICLSNG 343
Query: 176 DGLTIPA 182
+
Sbjct: 344 QEYHLRR 350
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 88.0 bits (219), Expect = 6e-21
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+ P V EEID+ +G + P+ D +L LE I+E LRL P AP+ I +
Sbjct: 301 LHNPQVKKKLYEEIDQNVGFS--RTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKAN 358
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
D + + G V+I+++ALH + K + P +F P R+
Sbjct: 359 VDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERF 399
Score = 51.4 bits (124), Expect = 3e-08
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EEID+ +G + P+ D +L LE I+E LRL P AP+ I + D + +
Sbjct: 312 EEIDQNVGFS--RTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVD 369
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 87.7 bits (218), Expect = 8e-21
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 1 MVYPSVL----EEIDRVLGRNTTH-CPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHI 54
+ +P + EE+DR LG + +Y+D +L L I E LRL P PL +
Sbjct: 307 LHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRT 366
Query: 55 DEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
+ G IP G+ V+ ++ H D + P F P R++
Sbjct: 367 TRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFL 409
Score = 52.2 bits (126), Expect = 1e-08
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 123 EEIDRVLGRNTTH-CPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTI 180
EE+DR LG + +Y+D +L L I E LRL P PL + + G I
Sbjct: 318 EELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDI 377
Query: 181 P 181
P
Sbjct: 378 P 378
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 86.9 bits (216), Expect = 2e-20
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
YP V E+D+V+GR+ P D L Y+ + E +R P+ I
Sbjct: 307 TRYPDVQTRVQAELDQVVGRD--RLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATT 364
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
+ + G IP V ++ ++++ DP +P+P FDP+R+
Sbjct: 365 ANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARF 405
Score = 50.3 bits (121), Expect = 7e-08
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
E+D+V+GR+ P D L Y+ + E +R P+ I + + G IP
Sbjct: 318 AELDQVVGRD--RLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIP 375
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 85.7 bits (213), Expect = 3e-20
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 1 MVYPS----VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+ P + +E+D V+GR P D QL YLE I ET R P I
Sbjct: 310 VTKPEIQRKIQKELDTVIGRE--RRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTT 367
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
D L+G IP V ++ + ++ DP+ + P F P R
Sbjct: 368 RDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPER 407
Score = 50.3 bits (121), Expect = 8e-08
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
+E+D V+GR P D QL YLE I ET R P I D L+G IP
Sbjct: 321 KELDTVIGRE--RRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIP 378
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 85.7 bits (213), Expect = 3e-20
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+YP++ +EID ++G N PS++D C++ Y E V+ E LR PL I
Sbjct: 301 ALYPNIQGQVQKEIDLIMGPN--GKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATS 358
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
ED ++ G +IP G TV+ ++Y++H D KY+ P F P R
Sbjct: 359 EDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPER 398
Score = 49.5 bits (119), Expect = 1e-07
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
+EID ++G N PS++D C++ Y E V+ E LR PL I ED ++ G +IP
Sbjct: 312 KEIDLIMGPN--GKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIP 369
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 85.3 bits (212), Expect = 5e-20
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+++P V +EID V+G+ P D + Y VI E R PL +
Sbjct: 300 ILHPDVQRRVQQEIDDVIGQV--RRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTS 357
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRW 96
D + G IP G T++ ++ ++ +D + P RF P +
Sbjct: 358 RDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHF 398
Score = 48.7 bits (117), Expect = 2e-07
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
+EID V+G+ P D + Y VI E R PL + D + G IP
Sbjct: 311 QEIDDVIGQV--RRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIP 368
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 84.1 bits (209), Expect = 1e-19
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
M YP + EEIDRV+G + P+ +D ++ Y++ V+ E R P +
Sbjct: 295 MKYPEIEEKLHEEIDRVIGPS--RIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEAT 352
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
D I G IP G V+ ++ ++ D + +P P +F P
Sbjct: 353 RDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEH 392
Score = 47.5 bits (114), Expect = 6e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EEIDRV+G + P+ +D ++ Y++ V+ E R P + D I G IP
Sbjct: 306 EEIDRVIGPS--RIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIP 363
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 83.8 bits (208), Expect = 2e-19
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+ YP V +EI++V+G + P+ +D ++ Y + VI E RL P + +
Sbjct: 296 LKYPHVTERVQKEIEQVIGSH--RPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVT 353
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+D G IP V + + DP+Y+ +P F+P
Sbjct: 354 KDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGH 393
Score = 47.9 bits (115), Expect = 5e-07
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
+EI++V+G + P+ +D ++ Y + VI E RL P + + +D G IP
Sbjct: 307 KEIEQVIGSH--RPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIP 364
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 83.8 bits (208), Expect = 2e-19
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
+ +P V EEI+RV+GRN P +D + Y + V+ E R P + +
Sbjct: 297 LKHPEVTAKVQEEIERVIGRN--RSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVT 354
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
D IP G T+LIS+ ++ D K +P+P FDP
Sbjct: 355 CDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHH 394
Score = 47.6 bits (114), Expect = 6e-07
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EEI+RV+GRN P +D + Y + V+ E R P + + D IP
Sbjct: 308 EEIERVIGRN--RSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIP 365
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 83.4 bits (207), Expect = 2e-19
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 1 MVYPSVL----EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHID 55
M +P V EEIDRV+G+N P +ED ++ Y+E VI E R P+ + R +
Sbjct: 296 MKHPEVEAKVHEEIDRVIGKN--RQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVK 353
Query: 56 EDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+D +P G V + ++ RDP ++ +P F+P
Sbjct: 354 KDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQH 393
Score = 47.2 bits (113), Expect = 8e-07
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFILDGLTIP 181
EEIDRV+G+N P +ED ++ Y+E VI E R P+ + R + +D +P
Sbjct: 307 EEIDRVIGKN--RQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLP 364
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 58.9 bits (143), Expect = 6e-11
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 36 VIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+ E LRL PA L R + L I G V++ + A +RDP+ + P R D R
Sbjct: 258 TVAEVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANRDPEVFAEPDRLDVDR 317
Score = 29.2 bits (66), Expect = 0.78
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 151 VIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
+ E LRL PA L R + L I
Sbjct: 258 TVAEVLRLHPALHLERRTATAEVRLGEHVIGE 289
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 58.8 bits (143), Expect = 8e-11
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 36 VIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E LR R E+ + G+ IP TVL++ A +RDPK +P P RFD +R
Sbjct: 277 AVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTR 336
Score = 28.7 bits (65), Expect = 1.2
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 151 VIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
++E LR R E+ + G+ IP
Sbjct: 277 AVEEILRYIAPPETTTRFAAEEVEIGGVAIPQ 308
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 58.8 bits (143), Expect = 8e-11
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E +R P + R ED L IP G V+ + + +RDP +P P D R
Sbjct: 293 ELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRVVALLGSANRDPARFPDPDVLDVHR 349
Score = 29.5 bits (67), Expect = 0.65
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E +R P + R ED L IP
Sbjct: 293 ELMRYDPPVQAVTRWAYEDIRLGDHDIPR 321
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 58.8 bits (143), Expect = 9e-11
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR + I R ED + G TI AG VL+SI ++RD K Y +P FD R
Sbjct: 282 ELLRFTSVSDHIVRMAKEDIEVGGATIKAGDAVLVSITLMNRDAKAYENPDIFDARR 338
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E LR + I R ED + G TI A
Sbjct: 282 ELLRFTSVSDHIVRMAKEDIEVGGATIKA 310
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 58.4 bits (142), Expect = 1e-10
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR P+ R +D D L G + V++ A +RDP+ Y P FD R
Sbjct: 272 ECLRYDPSVQSNTRQLDVDVELRGRRLRRDDVVVVLAGAANRDPRRYDRPDDFDIER 328
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E LR P+ R +D D L G +
Sbjct: 272 ECLRYDPSVQSNTRQLDVDVELRGRRLRR 300
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 58.0 bits (141), Expect = 2e-10
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR + R ED + G+TI G V + + A +RDP + +P FD +R
Sbjct: 273 ECLRYESPTQMTARVASEDIDICGVTIRQGEQVYLLLGAANRDPSIFTNPDVFDITR 329
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E LR + R ED + G+TI
Sbjct: 273 ECLRYESPTQMTARVASEDIDICGVTIRQ 301
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 57.7 bits (140), Expect = 2e-10
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
ET+R P L+ R+ +D + T+P G T+L+ + A HRDP +P RFDP R
Sbjct: 295 ETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPDR 351
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
ET+R P L+ R+ +D + T+P
Sbjct: 295 ETMRYDPPVQLVSRYAGDDLTIGTHTVPK 323
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 56.6 bits (137), Expect = 4e-10
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
I ETLR P LI R + +D ++ G+ I V I A +RDP+ + P F+ R
Sbjct: 306 IAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHR 364
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 152 IKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
I ETLR P LI R + +D ++ G+ I
Sbjct: 306 IAETLRYKPPVQLIPRQLSQDTVVGGMEIKK 336
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 56.1 bits (136), Expect = 6e-10
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E +R+ P R ED + G+ I AG + I A +RDP+ + P FD +R
Sbjct: 272 EMVRMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTR 328
Score = 27.6 bits (62), Expect = 2.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E +R+ P R ED + G+ I A
Sbjct: 272 EMVRMDPPQLSFLRFPTEDVEIGGVLIEA 300
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 55.3 bits (134), Expect = 1e-09
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E +R R D L G TI G VL+ + + +RDP+ + P R+D +R
Sbjct: 290 EAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLMFLGSANRDPRRWDDPDRYDITR 346
Score = 28.0 bits (63), Expect = 1.7
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 154 ETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
E +R R D L G TI
Sbjct: 290 EAVRFESPVQTFFRTTTRDVELAGATIGE 318
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 55.3 bits (134), Expect = 1e-09
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 39 ETLRLFPAAPLIG--RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E R P R+ ED L G+TI AG VL S A +RD +P R D R
Sbjct: 293 ELTRWVPLGVGTAFPRYAVEDVTLRGVTIRAGEPVLASTGAANRDQAQFPDADRIDVDR 351
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 55.3 bits (134), Expect = 1e-09
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
++E LR P + R ED G+TIPAG V++ + A +RD + P P R D +
Sbjct: 272 AVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDIT 331
Query: 95 R 95
R
Sbjct: 332 R 332
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 54.9 bits (133), Expect = 1e-09
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 39 ETLR-LFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR A + R D + + + G VL+ + + DP+++P+PG + R
Sbjct: 272 ELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDR 329
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 55.0 bits (133), Expect = 1e-09
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
++E LR P R E LDG IPAG TVL+ + HR P+ +P P RFD
Sbjct: 299 AVEEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIR 358
Query: 95 R 95
R
Sbjct: 359 R 359
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 55.0 bits (133), Expect = 1e-09
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E LR P P + R + + G+ IPA V V + + +RD + P RFDPSR
Sbjct: 278 VEEVLRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANRDSDAHDDPDRFDPSR 336
Score = 27.6 bits (62), Expect = 2.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 152 IKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
++E LR P P + R + + G+ IPA
Sbjct: 278 VEEVLRYRPPFPQMQRTTTKATEVAGVPIPA 308
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 54.6 bits (132), Expect = 2e-09
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 39 ETLRLFPAAPLIG--RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR P +G R ED + G+ I AG V +S A +RDP+ +P P R D R
Sbjct: 280 ELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFER 338
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 54.6 bits (132), Expect = 2e-09
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDF-ILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDP 93
V++ETLR L R+ D + DG TI G +L S A +R P ++ FD
Sbjct: 278 VVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDA 337
Query: 94 SR 95
+R
Sbjct: 338 TR 339
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 54.6 bits (132), Expect = 2e-09
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 36 VIKETLRLFPAAPLIG--RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDP 93
++E LR A + R+ ED G+TI AG VL + + D + + P FD
Sbjct: 277 AVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLPNFDERAFTGPEEFDA 336
Query: 94 SR 95
+R
Sbjct: 337 AR 338
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 54.6 bits (132), Expect = 2e-09
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 39 ETLRLFPAAPLIG--RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR +G R ED + G I AG V +S A +RDP +P P R D R
Sbjct: 283 ELLRWISHRTSVGLARIALEDVEVHGTRIAAGEPVYVSYLAANRDPDVFPDPDRIDLDR 341
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 54.6 bits (132), Expect = 2e-09
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
+ E +R R ED L G I G +V+ S+ A +RDP P R D +
Sbjct: 272 AVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVT 331
Query: 95 R 95
R
Sbjct: 332 R 332
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 54.2 bits (131), Expect = 3e-09
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
++E LR F A + R ED + G++I AG V++S+ + + DP + P D
Sbjct: 281 AVEELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGVIVSMLSANWDPAVFKDPAVLDVE 340
Query: 95 R 95
R
Sbjct: 341 R 341
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 53.8 bits (130), Expect = 4e-09
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
+ E LR+ A + R ED L G T+PA V+ + + DP+ + P R D
Sbjct: 285 AVDELLRVLSVADSIPLRVAAEDIELSGRTVPADDGVIALLAGANHDPEQFDDPERVDFH 344
Query: 95 R 95
R
Sbjct: 345 R 345
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 53.8 bits (130), Expect = 4e-09
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 39 ETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR + R +D G +I G V + I + RD + P FD R
Sbjct: 293 EVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRR 350
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 53.4 bits (129), Expect = 5e-09
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
V+ E +R P R +D ++DG I AG VL SI +RD P P D +
Sbjct: 281 VVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDAN 340
Query: 95 R 95
R
Sbjct: 341 R 341
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 53.4 bits (129), Expect = 6e-09
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 39 ETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR P P+ R EDF ++G+ IP G V + + HRDP+ + RFD +
Sbjct: 292 EVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDPRVFADADRFDITV 349
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 53.0 bits (128), Expect = 6e-09
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 39 ETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR A + GR D ++G I AG V++ +RD Y P D R
Sbjct: 283 ELLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIANRDGTVYEDPDALDIHR 340
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 53.1 bits (128), Expect = 7e-09
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDP-KYYPSPGRFDPSR 95
++E LRL + R D + TIPAG VL+ + +RD +Y P D +R
Sbjct: 287 VEELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLYGSANRDERQYGPDAAELDVTR 346
Score = 28.8 bits (65), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 152 IKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
++E LRL + R D + TIPA
Sbjct: 287 VEELLRLTSPVQGLARTTTRDVTIGDTTIPA 317
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 53.0 bits (128), Expect = 8e-09
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 36 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDP-KYYPSPGRFDP 93
V++ETLR P + ++ R ED + IPAG +++S AL RD + P+ RFD
Sbjct: 278 VVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDL 337
Query: 94 SR 95
+R
Sbjct: 338 TR 339
Score = 25.7 bits (57), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 151 VIKETLRLF-PAAPLIGRHIDEDFILDGLTIPA 182
V++ETLR P + ++ R ED + IPA
Sbjct: 278 VVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPA 310
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 53.0 bits (128), Expect = 8e-09
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 39 ETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E LR R D L G+ I G V+ + A DP + P RFD +R
Sbjct: 276 ELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERFDITR 333
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 51.4 bits (124), Expect = 2e-08
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E LR P R E + I G V + I + +RD + + P F P R
Sbjct: 244 VEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDR 302
Score = 26.0 bits (58), Expect = 9.1
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 152 IKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
++E LR P R E + I
Sbjct: 244 VEEALRFSPPVMRTIRVTKEKVKIRDQVIDE 274
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 51.5 bits (124), Expect = 3e-08
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 39 ETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E R A+ L I R ED ++ + A ++ S + +RD + + +P F+ +R
Sbjct: 279 ELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNR 336
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 51.1 bits (123), Expect = 3e-08
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+ E LR + A +GR + ++ + +T+ G T ++ RD + SP R
Sbjct: 269 VDELLRFYGPAM-VGRLVTQEVTVGDITMKPGQTAMLWFPIASRDRSAFDSPDNIVIER 326
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 51.1 bits (123), Expect = 3e-08
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
I+E LR + R + D G + AG +++ + + D + P +FD R
Sbjct: 267 IEEMLRWTAPVKNMCRVLTADTEFHGTALCAGEKMMLLFESANFDEAVFCEPEKFDVQR 325
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 50.7 bits (122), Expect = 4e-08
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
I+E LR P R E L TI G V + I + +RD + + +F P R
Sbjct: 244 IEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDR 302
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E R F R++ D G + G +L+ D +++ P D SR
Sbjct: 293 VEELFRRFAVVS-DARYVVSDMEFHGTMLKEGDLILLPTALHGLDDRHHDDPMTVDLSR 350
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 50.3 bits (121), Expect = 6e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 37 IKETLRLF-PAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++ETLR + P L R ED ++ I G V++ + + +RD ++ P F R
Sbjct: 222 VEETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDETFFDEPDLFKIGR 281
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 50.0 bits (120), Expect = 8e-08
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+E LR F GR + D+ G+ + G +L+ D + P D SR
Sbjct: 286 CEELLRRFSLVA-DGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR 343
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 50.0 bits (120), Expect = 8e-08
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+E R FP R + +D G+ + G +L+ D P P + D SR
Sbjct: 292 AEEMFRRFPVVS-EARMVAKDQEYKGVFLKRGDMILLPTALHGLDDAANPEPWKLDFSR 349
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E LR A + R D ++G +P+G V+ + A +RDP + P F P R
Sbjct: 291 VEEVLRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAANRDPAEFDDPDTFLPGR 349
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 48.5 bits (116), Expect = 3e-07
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E +R + R + +D L G + AG V + + +RD + P FD +R
Sbjct: 312 VEEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFADPWTFDLAR 370
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 48.0 bits (115), Expect = 3e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 39 ETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E +R +P + R+ D DG+TI G V + + DP + +P R
Sbjct: 273 ELMRRYPTV-AVSRNAVADVDADGVTIRKGDLVYLPSVLHNLDPASFEAPEEVRFDR 328
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 46.1 bits (110), Expect = 2e-06
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 36 VIKETLRLFPAAPL-IGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
+E LR R D + G I AG + S+ A +R P RFD +
Sbjct: 262 ATEEVLRHASIVEAPAPRVALADVRMAGRDIHAGDVLTCSMLATNRAP-----GDRFDIT 316
Query: 95 R 95
R
Sbjct: 317 R 317
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 45.4 bits (108), Expect = 3e-06
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
++E +R R D L G I AG ++++ A + DP +P P +FDP+R
Sbjct: 326 VEEAIRWTTPVQHFMRTAATDTELCGQKIAAGDWLMLNYVAANHDPAQFPEPRKFDPTR 384
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 45.0 bits (107), Expect = 4e-06
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
E +R R D+ L G+ I G V++ + + D + + P F+ R
Sbjct: 303 ADEIVRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILR 361
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 44.2 bits (105), Expect = 8e-06
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+ E +R + R D L G TI G V++ Y+ +RD + P F R
Sbjct: 302 VPEIIRWQTPLAHMRRTAIADSELGGKTIRKGDKVVMWYYSGNRDDEVIDRPEEFIIDR 360
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 43.8 bits (104), Expect = 1e-05
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 37 IKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSR 95
+ E +R R D + G I G +++S + +RD + + +P FD +R
Sbjct: 304 VDEAVRWTAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITR 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.026
Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 59/204 (28%)
Query: 5 SVLEEIDRVLGRNTTHCPSY-EDLCQLEYLECVIKETLRLFPAAPLIGR--H-IDEDFIL 60
+ E + + LG + S E ++ + V+ L F L G H + +
Sbjct: 56 TPAELVGKFLG----YVSSLVEPSKVGQFDQ-VLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 61 DGLTIPAGVTVLISIY--ALHRDPKYYPSPGRFDPSRWMRFRFRGD-------------- 104
+ T LI Y A + + S R G+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 105 ----------KTSAPLLELPLIPTSF-VLEEIDRVLGRNTTHCPSYEDLCQ--------- 144
+T L+ LI S L E+ R ++ +
Sbjct: 168 DYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 145 -LEYLECVIKETLRLFPAA-PLIG 166
+YL + P + PLIG
Sbjct: 227 DKDYLLSI--------PISCPLIG 242
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
coenzyme A biosynthesis, cytoplasm, metal-binding,
nucleotide-binding, potassium; HET: PAU; 1.51A
{Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
3bf1_A* 3bf3_A* 2gtd_A
Length = 249
Score = 29.9 bits (68), Expect = 0.33
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 23/83 (27%)
Query: 113 LPLIPTSFVLEEIDRVLGRNTTHCP------SYEDLCQLEYLECVIKETLRLFPA----- 161
LPL+ ++ D V+G++T + LE + IKE P
Sbjct: 166 LPLVE----VKPADFVVGKDTEENIRLGVVNGS--VYALEGIIGRIKEVYGDLPVVLTGG 219
Query: 162 -APLIGR-----HIDEDFILDGL 178
+ ++ DED + G+
Sbjct: 220 QSKIVKDMIKHEIFDEDLTIKGV 242
Score = 29.1 bits (66), Expect = 0.61
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 20/78 (25%)
Query: 4 PSV-LEEIDRVLGRNTTHCP------SYEDLCQLEYLECVIKETLRLFPA------APLI 50
P V ++ D V+G++T + LE + IKE P + ++
Sbjct: 167 PLVEVKPADFVVGKDTEENIRLGVVNGS--VYALEGIIGRIKEVYGDLPVVLTGGQSKIV 224
Query: 51 GR-----HIDEDFILDGL 63
DED + G+
Sbjct: 225 KDMIKHEIFDEDLTIKGV 242
>3djc_A Type III pantothenate kinase; structural genomics, putative
transfera 2, protein structure initiative; 2.40A
{Legionella pneumophila subsp}
Length = 266
Score = 29.6 bits (67), Expect = 0.43
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 26/88 (29%)
Query: 113 LPLIPTSFVLEEIDRVLGRNTTHCP------SYEDLCQLEYL-ECVIKETLRLFPA---- 161
LP + + + + V+GR+T L + L + + E
Sbjct: 170 LPSVE----IIKTESVVGRSTIESIQSGVYYGV--LGACKELIQRIHHEAFNGDQILILA 223
Query: 162 ----APLIGR-----HIDEDFILDGLTI 180
A L + H+ D +L G+ +
Sbjct: 224 TGGFASLFDKQGLYDHLVPDLVLQGIRL 251
Score = 28.8 bits (65), Expect = 0.84
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 23/83 (27%)
Query: 4 PSV-LEEIDRVLGRNTTHCP------SYEDLCQLEYL-ECVIKETLRLFPA--------A 47
PSV + + + V+GR+T L + L + + E A
Sbjct: 171 PSVEIIKTESVVGRSTIESIQSGVYYGV--LGACKELIQRIHHEAFNGDQILILATGGFA 228
Query: 48 PLIGR-----HIDEDFILDGLTI 65
L + H+ D +L G+ +
Sbjct: 229 SLFDKQGLYDHLVPDLVLQGIRL 251
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET:
U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Length = 189
Score = 26.9 bits (60), Expect = 2.9
Identities = 9/67 (13%), Positives = 16/67 (23%)
Query: 25 EDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKY 84
+ + E L+L ++G + DF + S L
Sbjct: 62 QHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK 121
Query: 85 YPSPGRF 91
R
Sbjct: 122 LDHCRRV 128
>1eje_A FMN-binding protein; structural genomics, PSI, protein struc
initiative; HET: FMN; 2.20A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: b.45.1.2
Length = 192
Score = 26.4 bits (59), Expect = 4.6
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 33 LECVIKETLRLFPAAPLIGR----HIDEDFILDGL 63
LEC + + + G + + +GL
Sbjct: 131 LECELLRMFEVGDHNLITGSVVSASVRSGAVKEGL 165
Score = 26.4 bits (59), Expect = 4.6
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 148 LECVIKETLRLFPAAPLIGR----HIDEDFILDGL 178
LEC + + + G + + +GL
Sbjct: 131 LECELLRMFEVGDHNLITGSVVSASVRSGAVKEGL 165
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 26.5 bits (59), Expect = 5.5
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 21/85 (24%)
Query: 113 LPLIPTSFVLEEIDRVLGRNTTHCPS----YEDLCQLEYLECVIKETLRLFPA------- 161
LP I + + V+G+NT Y + Q+E + +KE + P
Sbjct: 168 LPRIE----ITKPSSVVGKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGL 223
Query: 162 APLIGR------HIDEDFILDGLTI 180
A LI +D L GL +
Sbjct: 224 AKLISEESNVIDVVDPFLTLKGLYM 248
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 26.5 bits (59), Expect = 6.1
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 57 DFILDGLTIPAGVTVLISIYALHRDPKYYPSP 88
+ G + +L ++ + + +Y P
Sbjct: 434 AQL--GWQR--ILRLLENLQHHYGEERYRPCS 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 8.2
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 48/172 (27%)
Query: 3 YPSVLEEIDRVLGRNTTHCPSYE-------DLCQLEYLE-----CVIKETLR----LFPA 46
+ I L R YE ++ + C I T R
Sbjct: 223 IKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 47 APLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYP------SP------GRF--- 91
+ HI D LT ++L+ L P+ P +P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 92 DPSRWMRFR-FRGDKTSAPLLELPLIPTSFVLEEIDRVLGRNTTHCPSYEDL 142
+ W ++ DK + +I +S L ++ R ++ L
Sbjct: 340 GLATWDNWKHVNCDKLTT------IIESS--LNVLEPAEYRK-----MFDRL 378
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN
induction, IRF family, gene regulation/DNA complex; HET:
DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A
1irg_A 1if1_A*
Length = 113
Score = 25.3 bits (55), Expect = 8.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 76 YALHRDPKYYPSPGRFDPSRW-MRFR 100
+A+H K+ P + DP W FR
Sbjct: 58 WAIHTG-KHQPGIDKPDPKTWKANFR 82
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD,
lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP
GUN; 2.81A {Mus musculus} PDB: 3s24_A
Length = 343
Score = 25.8 bits (55), Expect = 9.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 90 RFDPSRWMRFRFRGDKTSA 108
+F+ + W+ R R DK+
Sbjct: 294 KFENNSWVFMRQRIDKSFP 312
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 25.9 bits (57), Expect = 9.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 21 CPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHI--DE 56
P+ ++L +YLE + + +F + H+ DE
Sbjct: 313 NPTKDEL--YQYLEDIYSDMAEVFDTTDIF--HMGGDE 346
Score = 25.9 bits (57), Expect = 9.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 136 CPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHI--DE 171
P+ ++L +YLE + + +F + H+ DE
Sbjct: 313 NPTKDEL--YQYLEDIYSDMAEVFDTTDIF--HMGGDE 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.145 0.453
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,146,233
Number of extensions: 187584
Number of successful extensions: 827
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 166
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.5 bits)