RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6726
(184 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 77.4 bits (189), Expect = 1e-17
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 2 VYPSVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILD 61
V + EEID VL P+Y+ + Q+EYL+ V+ ETLRLFP A + R +D ++
Sbjct: 300 VQQKLQEEIDAVLPNK--APPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN 357
Query: 62 GLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
G+ IP GV V+I YALHRDPKY+ P +F P R+ +
Sbjct: 358 GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSK 394
Score = 39.3 bits (90), Expect = 1e-04
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 123 EEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPA 182
EEID VL P+Y+ + Q+EYL+ V+ ETLRLFP A + R +D ++G+ IP
Sbjct: 306 EEIDAVLPNK--APPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPK 363
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 72.5 bits (176), Expect = 6e-16
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 1 MVYPSVLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPL-IGRHIDEDFI 59
+ V +EID ++G N PS++D C++ Y E V+ E LR PL I ED +
Sbjct: 292 NIQGQVQKEIDLIMGPN--GKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAV 349
Query: 60 LDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
+ G +IP G TV+ ++Y++H D KY+ P F P R++
Sbjct: 350 VRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFL 387
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 63.9 bits (154), Expect = 6e-13
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 6 VLEEIDRVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRH-IDEDFILDGLT 64
V +EI++V+G + P+ +D ++ Y + VI E RL P H + +D G
Sbjct: 297 VQKEIEQVIGSH--RPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYV 354
Query: 65 IPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
IP V + + DP+Y+ +P F+P ++
Sbjct: 355 IPKNTEVFPVLSSALHDPRYFETPNTFNPGHFL 387
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 48.2 bits (113), Expect = 1e-07
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGL-TIPAGVTVLISIYAL 78
PSY+ + QL+Y+ V+ E LRL+P AP + ED +L G + G +++ I L
Sbjct: 299 PVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQL 358
Query: 79 HRDPKYY-PSPGRFDPSRWMRFRFRGDKTSAP 109
HRD + F P R+ P
Sbjct: 359 HRDKTIWGDDVEEFRPERFENPSAIPQHAFKP 390
Score = 25.4 bits (54), Expect = 5.2
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 135 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDG 177
PSY+ + QL+Y+ V+ E LRL+P AP + ED +L G
Sbjct: 299 PVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGG 341
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 47.5 bits (111), Expect = 3e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 61 DGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
G I G +++S + +RD + + +P FD +R+
Sbjct: 328 RGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRFPN 365
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 46.3 bits (108), Expect = 5e-07
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 52 RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
+ + + DG TI G +L S A +R P ++ FD +R ++
Sbjct: 290 YAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRTVK 336
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 43.9 bits (102), Expect = 4e-06
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 12 RVLGRNTTHCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHID-EDFILDGLTIPAGVT 70
RV+GRN P +D + Y + V+ E R P H D IP G T
Sbjct: 304 RVIGRN--RSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTT 361
Query: 71 VLISIYALHRDPKYYPSPGRFDPSRWM 97
+LIS+ ++ D K +P+P FDP ++
Sbjct: 362 ILISLTSVLHDNKEFPNPEMFDPHHFL 388
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 41.3 bits (95), Expect = 3e-05
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 41 LRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
LR R E+ + G+ IP TVL++ A +RDPK +P P RFD +R R
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRDTR 337
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 40.5 bits (93), Expect = 4e-05
Identities = 19/77 (24%), Positives = 26/77 (33%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
+ V + L R ED L G I G +V+ S+ A +
Sbjct: 253 EQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAAN 312
Query: 80 RDPKYYPSPGRFDPSRW 96
RDP P R D +R
Sbjct: 313 RDPALAPDVDRLDVTRE 329
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 39.4 bits (90), Expect = 1e-04
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 52 RHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWM 97
R ED ++ + A ++ S + +RD + + +P F+ +R
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKW 333
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 38.2 bits (87), Expect = 3e-04
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 35 CVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPS 94
V + L P R +D ++DG I AG VL SI +RD P P D +
Sbjct: 278 VVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDAN 337
Query: 95 RWMR 98
R
Sbjct: 338 RAAV 341
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 37.1 bits (84), Expect = 7e-04
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 42 RLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALHRDPKYY-PSPGRFDPSRWMRFR 100
P + ++ R ED + IPAG +++S AL RD + + P+ RFD +R R
Sbjct: 278 FSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTSGNR 337
Query: 101 F 101
Sbjct: 338 H 338
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 36.4 bits (82), Expect = 0.001
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 53 HIDEDFILDGLTIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
+D G +I G V + I + RD + P FD R
Sbjct: 293 FARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDTS 338
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 36.2 bits (82), Expect = 0.001
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
+ E ++E R +P P +G + +DF+ + G +VL+ +Y +
Sbjct: 258 KYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTN 317
Query: 80 RDPKYYPSPGRFDPSRWM 97
DP+ + P F P R+
Sbjct: 318 HDPRLWDHPDEFRPERFA 335
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 35.6 bits (80), Expect = 0.002
Identities = 17/79 (21%), Positives = 28/79 (35%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
+ D + + ++E LR P R E + I G V + I + +
Sbjct: 227 TLYNSWDYVREKGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASAN 286
Query: 80 RDPKYYPSPGRFDPSRWMR 98
RD + + P F P R
Sbjct: 287 RDEEVFKDPDSFIPDRTPN 305
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 34.0 bits (76), Expect = 0.006
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 64 TIPAGVTVLISIYALHRDPKYYPSPGRFDPSRWMR 98
I AG V +S A +RDP+ +P P R D R
Sbjct: 300 RIRAGDAVYVSYLAANRDPEVFPDPDRIDFERSPN 334
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 32.8 bits (73), Expect = 0.021
Identities = 14/77 (18%), Positives = 25/77 (32%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
++L + E L + GR + D+ G+ + G +L+
Sbjct: 257 SPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSG 316
Query: 80 RDPKYYPSPGRFDPSRW 96
D + P D SR
Sbjct: 317 LDERENACPMHVDFSRQ 333
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 32.1 bits (71), Expect = 0.031
Identities = 18/79 (22%), Positives = 29/79 (36%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
++ + + I+E LR P R E L TI G V + I + +
Sbjct: 227 RFNLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASAN 286
Query: 80 RDPKYYPSPGRFDPSRWMR 98
RD + + +F P R
Sbjct: 287 RDEEVFHDGEKFIPDRNPN 305
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 31.0 bits (68), Expect = 0.073
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 20 HCPSYEDLCQLEYLECVIKETLRLFPAAPLIGRHIDEDFILDGLTIPAGVTVLISIYALH 79
S+ L Q+ LE V+KETLRL P ++ R +F + G I G V S +
Sbjct: 290 RSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISN 349
Query: 80 RDPKYYPSPGRFDPSRWMRFR 100
R P+ +P P F P+R+ + R
Sbjct: 350 RIPEDFPDPHDFVPARYEQPR 370
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 30.1 bits (66), Expect = 0.16
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 66 PAGVTVLISIYALHRDPKYYPSPGRFDPSRWMRFRF 101
G VL+ + + DP+++P+PG + R
Sbjct: 299 RKGELVLVLLEGANFDPEHFPNPGSIELDRPNPTSH 334
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping
enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 89
Score = 24.7 bits (54), Expect = 3.0
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 90 RFDPSRWMRFRFRGDKTSA 108
F W + R DK A
Sbjct: 45 GFADGTWKYIQGRSDKNQA 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.145 0.453
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,262
Number of extensions: 38036
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 26
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)