BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy673
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 251/434 (57%), Gaps = 61/434 (14%)
Query: 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRS 91
T +P V+ MVGLPARGK+Y++ KL RYL
Sbjct: 32 TNSPTVIVMVGLPARGKTYISKKLTRYL-------------------------------- 59
Query: 92 DNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALS 151
+WI +G+YRR A ++++FFR DNE A+
Sbjct: 60 ---------------------NWIGVPTKVFNVGEYRR-EAVKQYSSYNFFRPDNEEAMK 97
Query: 152 IRDQIALQALEDLDDWIIK-GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210
+R Q AL AL D+ ++ K GGQ+A FDATN+T+ RR+ I H +E + FF+ES+CD
Sbjct: 98 VRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILH-FAKENDFKAFFIESVCD 156
Query: 211 DPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH----LSYMQIY 266
DP ++ NI EVK++ PDY+ +A +DFM RI YE YQ L D LS +++
Sbjct: 157 DPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKVI 216
Query: 267 NVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQ 326
+VG+R +V+ +Q RIV +LM++++ PRT+YL R GE+ +N+Q +GGDS L++ G+
Sbjct: 217 DVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGK 276
Query: 327 EYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTE 386
+++ LS FV E+NL DLR+WTS ++ QT ++++KAL++I AG+CE TY E
Sbjct: 277 KFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEE 336
Query: 387 IYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCL 446
I + +Y DK+Y R+P GE Y+D++ RLE +I+++E + N+L++ H AVLRCL
Sbjct: 337 IRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELER-QENVLVICHQAVLRCL 395
Query: 447 LGYFQEEPPDRFAY 460
L YF ++ + Y
Sbjct: 396 LAYFLDKSAEEMPY 409
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 252/431 (58%), Gaps = 61/431 (14%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDN 93
+P +V MVGLPARGK+Y++TKL RYL ++G ++FN
Sbjct: 2 SPTMVIMVGLPARGKTYISTKLTRYLNFIGTPTKVFN----------------------- 38
Query: 94 EYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIR 153
LG YRR + S ++FF DN AL IR
Sbjct: 39 ------------------------------LGQYRRE--AVSYKNYEFFLPDNMEALQIR 66
Query: 154 DQIALQALEDLDDWII-KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212
Q AL AL+D+ +++ + G VA FDATN+T+ RR+ I + +E Y +FF+ES+C+DP
Sbjct: 67 KQCALAALKDVHNYLSHEEGHVAVFDATNTTRERRSLIL-QFAKEHGYKVFFIESICNDP 125
Query: 213 DILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTED---HLSYMQIYNVG 269
I+ NI++VKL PDY + +K EDF+ RI YE YQ L E+ HLSY++I++VG
Sbjct: 126 GIIAENIRQVKLGSPDYIDCDREKVLEDFLKRIECYEVNYQPLDEELDSHLSYIKIFDVG 185
Query: 270 KRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYS 329
R +V+ +Q R V +LM++++TPR++YL R GES N++ +GGDS L+ G++Y+
Sbjct: 186 TRYMVNRVQDHIQSRTVYYLMNIHVTPRSIYLCRHGESELNIRGRIGGDSGLSVRGKQYA 245
Query: 330 KCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYT 389
L++F+ + +S L+++TS + QT ++++KAL++I AG+CE TY EI
Sbjct: 246 YALANFIQSQGISSLKVFTSRMKRTIQTAEALGVPYEQFKALNEIDAGVCEEMTYEEIQE 305
Query: 390 NHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
++ ++ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL Y
Sbjct: 306 HYPEEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLLAY 364
Query: 450 FQEEPPDRFAY 460
F ++ + Y
Sbjct: 365 FLDKSSEELPY 375
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 248/433 (57%), Gaps = 60/433 (13%)
Query: 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRS 91
T P ++ MVGLPARGK+Y++ KL RYL ++G+ R FN
Sbjct: 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN--------------------- 74
Query: 92 DNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALS 151
+G YRR + + +FF DNE L
Sbjct: 75 --------------------------------VGQYRRDMVKTYK-SFEFFLPDNEEGLK 101
Query: 152 IRDQIALQALEDLDDWIIK-GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210
IR Q AL AL D+ ++ + GG VA FDATN+T+ RR I + E+ Y FFVES+C
Sbjct: 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICV 160
Query: 211 DPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH---LSYMQIYN 267
DP+++ NI +VKL PDY + D+A EDFM RI YE Y++L E+ LSY++I +
Sbjct: 161 DPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 220
Query: 268 VGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQE 327
VG+ VV+ +Q RIV +LM++++TPR++YL R GES N++ +GGD L+ G+E
Sbjct: 221 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRAGESELNLKGRIGGDPGLSPRGRE 280
Query: 328 YSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEI 387
+SK L+ F+S++N+ DL+++TS + QT ++++K L++I AG+CE TY EI
Sbjct: 281 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 340
Query: 388 YTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLL 447
++ ++ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL
Sbjct: 341 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLL 399
Query: 448 GYFQEEPPDRFAY 460
YF ++ + Y
Sbjct: 400 AYFLDKAAEELPY 412
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 248/433 (57%), Gaps = 60/433 (13%)
Query: 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRS 91
T P ++ MVGLPARGK+Y++ KL RYL ++G+ R FN
Sbjct: 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN--------------------- 74
Query: 92 DNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALS 151
+G YRR + + +FF DNE L
Sbjct: 75 --------------------------------VGQYRRDMVKTYK-SFEFFLPDNEEGLK 101
Query: 152 IRDQIALQALEDLDDWIIK-GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210
IR Q AL AL D+ ++ + GG VA FDATN+T+ RR I + E+ Y FFVES+C
Sbjct: 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICV 160
Query: 211 DPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH---LSYMQIYN 267
DP+++ NI +VKL PDY + D+A EDFM RI YE Y++L E+ LSY++I +
Sbjct: 161 DPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 220
Query: 268 VGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQE 327
VG+ VV+ +Q RIV +LM++++TPR++YL R GES N++ +GGD L+ G+E
Sbjct: 221 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE 280
Query: 328 YSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEI 387
+SK L+ F+S++N+ DL+++TS + QT ++++K L++I AG+CE TY EI
Sbjct: 281 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 340
Query: 388 YTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLL 447
++ ++ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL
Sbjct: 341 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLL 399
Query: 448 GYFQEEPPDRFAY 460
YF ++ + Y
Sbjct: 400 AYFLDKAAEELPY 412
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 248/433 (57%), Gaps = 60/433 (13%)
Query: 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRS 91
T P ++ MVGLPARGK+Y++ KL RYL ++G+ R FN
Sbjct: 35 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN--------------------- 73
Query: 92 DNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALS 151
+G YRR + + +FF DNE L
Sbjct: 74 --------------------------------VGQYRRDMVKTYK-SFEFFLPDNEEGLK 100
Query: 152 IRDQIALQALEDLDDWIIK-GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210
IR Q AL AL D+ ++ + GG VA FDATN+T+ RR I + E+ Y FFVES+C
Sbjct: 101 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICV 159
Query: 211 DPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH---LSYMQIYN 267
DP+++ NI +VKL PDY + D+A EDFM RI YE Y++L E+ LSY++I +
Sbjct: 160 DPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 219
Query: 268 VGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQE 327
VG+ VV+ +Q RIV +LM++++TPR++YL R GES N++ +GGD L+ G+E
Sbjct: 220 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE 279
Query: 328 YSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEI 387
+SK L+ F+S++N+ DL+++TS + QT ++++K L++I AG+CE TY EI
Sbjct: 280 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 339
Query: 388 YTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLL 447
++ ++ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL
Sbjct: 340 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQAVMRCLL 398
Query: 448 GYFQEEPPDRFAY 460
YF ++ + Y
Sbjct: 399 AYFLDKAAEELPY 411
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
R++YL R GES N++ +GGDS L+A G++Y+ L++F+ + +S L++WTS + Q
Sbjct: 2 RSIYLCRXGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQ 61
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDV 416
T ++++KAL++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D+
Sbjct: 62 TAEALGVPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 121
Query: 417 LTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY 460
+ RLE +I+++E + N+L++ H AV+RCLL YF ++ D Y
Sbjct: 122 VQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKSSDELPY 164
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
R++YL R GES N++ +GGDS L+A G++Y+ L++F+ + +S L++WTS + Q
Sbjct: 2 RSIYLCRHGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQ 61
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDV 416
T ++++KAL++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D+
Sbjct: 62 TAEALGVPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 121
Query: 417 LTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY 460
+ RLE +I+++E + N+L++ H AV+RCLL YF ++ D Y
Sbjct: 122 VQRLEPVIMELER-QENVLVICHQAVMRCLLAYFLDKSSDELPY 164
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
R++YL R GES N++ +GGDS L+A G++Y+ L++F+ + +S L++WTS + Q
Sbjct: 1 RSIYLCRHGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHXKRTIQ 60
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDV 416
T ++++KAL++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D+
Sbjct: 61 TAEALGVPYEQWKALNEIDAGVCEEXTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 120
Query: 417 LTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY 460
+ RLE +I ++E + N+L++ H AV RCLL YF ++ D Y
Sbjct: 121 VQRLEPVIXELER-QENVLVICHQAVXRCLLAYFLDKSSDELPY 163
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
T+YLTR GE+ NV+ + G DS LT G++ + L + L+ I+TS+ A
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELA--AIYTSTSGRAL 60
Query: 356 QTVAQCPGSH----KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNR----W 407
+T G + + L +IH G EG+T+ EI + D F+
Sbjct: 61 ETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAF-----DHFWQAPHLYA 115
Query: 408 PQ-GECYKDVLTR-LELIILKIE-HSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
PQ GE + DV R LE + ++ H +LIV+H VL+ L+ F++ P D
Sbjct: 116 PQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHL 169
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
T+YLTR GE+ NV+ + G DS LT G++ + L + L+ I+TS+ A
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELA--AIYTSTSGRAL 60
Query: 356 QTVAQCPGSH----KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNR----W 407
+T G + + L +IH G EG+T+ EI + D F+
Sbjct: 61 ETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAF-----DHFWQAPHLYA 115
Query: 408 PQ-GECYKDVLTR-LELIILKIE-HSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
PQ GE + DV R LE + ++ H +LIV+H VL+ L+ F++ P D
Sbjct: 116 PQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHL 169
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75
V+ +VG+ GK+ A KL RY++ GL L YR
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75
V+ +VG+ GK+ A KL RY++ GL L YR
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80
VV + GLP GK+ +AT+L L+ G V + + GD+ R S
Sbjct: 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD-GDWARTTVS 57
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 153 RDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212
R++ +A+E LD +K A+ D+ + QA+R I + E + MLF + DP
Sbjct: 133 REKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 213 DILDRNIKEVK 223
+++ + +K
Sbjct: 193 EMVGEVLSVMK 203
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 153 RDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212
R++ +A+E LD +K A+ D+ + QA+R I + E + MLF + DP
Sbjct: 112 REKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 171
Query: 213 DIL 215
+++
Sbjct: 172 EMV 174
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 368 YKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQ------GECYKDV 416
Y A ++H+ + + Y ++Y+ + + Y D FY W GE Y ++
Sbjct: 220 YVAFTEVHSPLASPKKYLDMYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYYANI 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,963,810
Number of Sequences: 62578
Number of extensions: 679041
Number of successful extensions: 1377
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 26
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)