Query psy673
Match_columns 512
No_of_seqs 309 out of 2529
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:58:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234|consensus 100.0 2.2E-84 4.7E-89 665.2 37.8 410 19-485 13-433 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 8.4E-72 1.8E-76 622.0 40.7 377 34-474 214-626 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 5.4E-63 1.2E-67 477.9 18.8 211 31-296 8-222 (222)
4 PRK14116 gpmA phosphoglyceromu 100.0 4.8E-35 1E-39 286.7 19.6 179 296-474 1-218 (228)
5 PRK13463 phosphatase PhoE; Pro 100.0 9.1E-35 2E-39 279.8 20.2 182 296-479 2-193 (203)
6 PRK15004 alpha-ribazole phosph 100.0 1.9E-34 4.1E-39 276.6 20.6 179 297-477 1-188 (199)
7 PRK14119 gpmA phosphoglyceromu 100.0 1.8E-34 3.9E-39 282.7 19.6 180 296-475 1-219 (228)
8 PRK01112 phosphoglyceromutase; 100.0 2E-34 4.3E-39 282.1 19.4 183 296-480 1-223 (228)
9 PRK14117 gpmA phosphoglyceromu 100.0 5.4E-34 1.2E-38 279.6 19.9 180 296-475 1-219 (230)
10 PRK14118 gpmA phosphoglyceromu 100.0 8.8E-34 1.9E-38 277.6 19.8 179 297-475 1-218 (227)
11 PRK01295 phosphoglyceromutase; 100.0 1E-33 2.2E-38 273.1 19.5 179 295-473 1-193 (206)
12 PRK14120 gpmA phosphoglyceromu 100.0 1.7E-33 3.7E-38 278.7 20.3 180 295-474 3-219 (249)
13 PRK13462 acid phosphatase; Pro 100.0 4.4E-33 9.6E-38 268.1 21.4 180 293-478 2-187 (203)
14 COG0406 phoE Broad specificity 100.0 4E-33 8.7E-38 268.8 19.5 182 295-476 1-191 (208)
15 TIGR03162 ribazole_cobC alpha- 100.0 6.5E-33 1.4E-37 260.4 17.5 168 299-470 1-177 (177)
16 TIGR03848 MSMEG_4193 probable 100.0 1.7E-32 3.8E-37 263.9 19.8 179 298-480 1-194 (204)
17 TIGR01258 pgm_1 phosphoglycera 100.0 1.7E-32 3.8E-37 271.1 19.7 178 297-474 1-217 (245)
18 PRK03482 phosphoglycerate muta 100.0 3E-32 6.4E-37 264.5 20.5 177 296-474 1-186 (215)
19 PRK14115 gpmA phosphoglyceromu 100.0 2.7E-32 5.9E-37 270.1 19.9 179 297-475 1-218 (247)
20 PRK07238 bifunctional RNase H/ 100.0 1.3E-30 2.7E-35 273.2 21.5 179 293-473 168-355 (372)
21 PF00300 His_Phos_1: Histidine 100.0 4.1E-29 8.8E-34 228.4 11.4 149 298-446 1-158 (158)
22 smart00855 PGAM Phosphoglycera 100.0 3.2E-28 6.9E-33 223.8 13.0 145 298-446 1-155 (155)
23 KOG0235|consensus 100.0 1.1E-27 2.5E-32 228.5 15.4 179 295-473 4-199 (214)
24 PTZ00123 phosphoglycerate muta 99.9 3.9E-27 8.4E-32 232.0 18.3 167 309-475 1-206 (236)
25 COG0588 GpmA Phosphoglycerate 99.9 9.5E-27 2E-31 218.1 14.9 178 296-473 1-217 (230)
26 cd07067 HP_PGM_like Histidine 99.9 7.3E-22 1.6E-26 180.6 14.2 133 298-474 1-143 (153)
27 PTZ00122 phosphoglycerate muta 99.9 2E-21 4.3E-26 197.3 16.5 160 297-480 103-283 (299)
28 PF01591 6PF2K: 6-phosphofruct 99.9 2.8E-22 6.1E-27 194.3 9.2 168 5-235 7-181 (222)
29 cd07040 HP Histidine phosphata 99.8 9.2E-19 2E-23 159.1 13.5 137 298-475 1-144 (153)
30 PRK06193 hypothetical protein; 99.8 8.3E-18 1.8E-22 161.2 14.1 155 295-488 41-203 (206)
31 TIGR00249 sixA phosphohistidin 99.7 1.2E-16 2.5E-21 147.1 15.9 138 297-473 1-139 (152)
32 COG2062 SixA Phosphohistidine 99.7 4.6E-16 9.9E-21 143.3 12.7 142 296-474 1-142 (163)
33 KOG4754|consensus 99.7 6.4E-16 1.4E-20 144.8 12.2 157 296-452 14-201 (248)
34 PRK10848 phosphohistidine phos 99.7 2.1E-15 4.5E-20 139.8 14.6 135 297-473 1-139 (159)
35 PRK15416 lipopolysaccharide co 99.6 2.5E-14 5.4E-19 136.2 13.7 119 294-453 52-173 (201)
36 KOG3734|consensus 99.6 1.9E-14 4.1E-19 141.7 13.1 161 293-455 9-218 (272)
37 COG0645 Predicted kinase [Gene 99.6 3.1E-14 6.8E-19 130.7 12.4 153 36-264 2-155 (170)
38 KOG0234|consensus 99.5 9.3E-15 2E-19 151.6 6.4 164 5-233 23-196 (438)
39 KOG4609|consensus 99.5 1.6E-13 3.5E-18 128.7 11.0 152 295-473 93-260 (284)
40 PF13671 AAA_33: AAA domain; P 99.5 2.1E-13 4.5E-18 122.9 9.3 117 37-221 1-118 (143)
41 TIGR01663 PNK-3'Pase polynucle 99.4 5.1E-12 1.1E-16 136.9 14.9 86 172-268 420-507 (526)
42 PHA02530 pseT polynucleotide k 99.3 6.5E-11 1.4E-15 120.4 15.4 147 35-255 2-150 (300)
43 PRK06762 hypothetical protein; 99.2 1.3E-10 2.7E-15 108.0 11.5 115 35-221 2-116 (166)
44 cd02027 APSK Adenosine 5'-phos 99.2 9.5E-11 2.1E-15 107.4 10.3 116 37-220 1-116 (149)
45 cd02021 GntK Gluconate kinase 99.2 1.3E-10 2.8E-15 106.0 11.1 73 171-260 71-143 (150)
46 COG4639 Predicted kinase [Gene 99.1 4.1E-10 8.8E-15 102.0 11.3 47 172-219 69-115 (168)
47 TIGR03575 selen_PSTK_euk L-ser 99.1 1.6E-09 3.5E-14 111.7 15.0 189 37-257 1-196 (340)
48 TIGR03574 selen_PSTK L-seryl-t 99.1 6.5E-10 1.4E-14 110.4 11.6 116 37-221 1-116 (249)
49 PF08433 KTI12: Chromatin asso 99.1 1.7E-09 3.7E-14 108.6 13.1 148 37-266 3-154 (270)
50 PRK11545 gntK gluconate kinase 99.0 2.1E-09 4.5E-14 100.0 11.6 79 171-270 67-145 (163)
51 PRK14532 adenylate kinase; Pro 99.0 3.2E-09 7E-14 100.6 11.7 153 37-255 2-155 (188)
52 PRK14531 adenylate kinase; Pro 99.0 6E-09 1.3E-13 98.7 12.7 74 172-256 79-153 (183)
53 TIGR01359 UMP_CMP_kin_fam UMP- 98.9 1.1E-08 2.4E-13 96.2 12.0 91 172-269 76-168 (183)
54 TIGR00455 apsK adenylylsulfate 98.9 1E-08 2.3E-13 96.9 10.5 119 33-219 16-134 (184)
55 PRK14527 adenylate kinase; Pro 98.9 2.7E-08 5.9E-13 94.7 13.2 92 172-270 83-177 (191)
56 PF01583 APS_kinase: Adenylyls 98.9 2.4E-08 5.3E-13 91.9 12.1 115 35-218 2-117 (156)
57 TIGR01313 therm_gnt_kin carboh 98.9 2.1E-08 4.5E-13 92.8 11.3 49 167-221 66-114 (163)
58 cd00227 CPT Chloramphenicol (C 98.8 1.7E-08 3.7E-13 94.8 10.3 47 171-221 84-131 (175)
59 PRK05506 bifunctional sulfate 98.8 1.8E-08 3.8E-13 113.1 10.6 117 34-218 459-575 (632)
60 PRK05537 bifunctional sulfate 98.8 3.7E-08 7.9E-13 108.7 11.9 120 31-217 388-508 (568)
61 PRK09825 idnK D-gluconate kina 98.8 8.8E-08 1.9E-12 90.3 12.2 77 173-270 77-153 (176)
62 PRK03846 adenylylsulfate kinas 98.7 8.9E-08 1.9E-12 91.8 11.2 119 31-217 20-138 (198)
63 PRK00889 adenylylsulfate kinas 98.7 1.1E-07 2.4E-12 89.0 11.1 114 35-218 4-117 (175)
64 COG4088 Predicted nucleotide k 98.7 3.2E-07 6.9E-12 87.0 13.5 139 37-256 3-142 (261)
65 PLN02200 adenylate kinase fami 98.7 1.9E-07 4.2E-12 92.0 12.6 165 34-270 42-209 (234)
66 PRK12339 2-phosphoglycerate ki 98.6 1E-06 2.2E-11 84.7 15.2 72 158-239 83-154 (197)
67 PF06414 Zeta_toxin: Zeta toxi 98.6 2.6E-07 5.7E-12 88.6 11.1 135 31-225 11-145 (199)
68 PRK00279 adk adenylate kinase; 98.6 4.1E-07 9E-12 88.3 12.1 84 172-256 78-183 (215)
69 cd00464 SK Shikimate kinase (S 98.5 6.1E-07 1.3E-11 81.6 10.8 27 38-64 2-28 (154)
70 cd01428 ADK Adenylate kinase ( 98.5 1.2E-06 2.6E-11 83.0 13.2 97 172-269 77-188 (194)
71 PRK12337 2-phosphoglycerate ki 98.5 1.5E-06 3.3E-11 92.5 14.8 153 33-224 253-406 (475)
72 PTZ00322 6-phosphofructo-2-kin 98.5 8E-07 1.7E-11 100.3 11.7 160 9-235 214-379 (664)
73 PRK13808 adenylate kinase; Pro 98.4 1.6E-06 3.5E-11 89.2 11.7 160 37-256 2-162 (333)
74 PRK05541 adenylylsulfate kinas 98.4 1.4E-06 3.1E-11 81.6 10.3 45 31-75 3-47 (176)
75 TIGR01360 aden_kin_iso1 adenyl 98.4 2.6E-06 5.6E-11 80.2 12.1 75 171-255 81-155 (188)
76 PLN02674 adenylate kinase 98.4 3.9E-06 8.4E-11 83.1 12.4 164 33-256 29-214 (244)
77 PRK01184 hypothetical protein; 98.4 3.3E-06 7.1E-11 79.7 11.0 67 169-248 77-143 (184)
78 PRK14529 adenylate kinase; Pro 98.3 7E-06 1.5E-10 80.3 13.2 156 37-253 2-182 (223)
79 TIGR01351 adk adenylate kinase 98.3 4.3E-06 9.4E-11 80.8 11.5 82 172-256 78-180 (210)
80 PTZ00088 adenylate kinase 1; P 98.3 9.2E-06 2E-10 79.9 12.9 163 32-256 3-196 (229)
81 PRK14528 adenylate kinase; Pro 98.3 1.3E-05 2.7E-10 76.3 13.1 78 172-256 79-157 (186)
82 PRK14530 adenylate kinase; Pro 98.3 5.9E-06 1.3E-10 80.2 11.1 80 172-256 82-182 (215)
83 PF07931 CPT: Chloramphenicol 98.3 2.7E-06 5.9E-11 80.0 8.0 51 168-221 79-130 (174)
84 PRK02496 adk adenylate kinase; 98.2 9E-06 1.9E-10 76.8 10.3 74 172-256 79-153 (184)
85 PRK13946 shikimate kinase; Pro 98.2 1.1E-05 2.3E-10 76.5 10.7 42 34-80 9-50 (184)
86 COG0529 CysC Adenylylsulfate k 98.2 1E-05 2.2E-10 75.3 10.0 117 32-216 20-136 (197)
87 PRK13948 shikimate kinase; Pro 98.2 2.4E-05 5.2E-10 74.2 12.5 44 32-80 7-50 (182)
88 PF00406 ADK: Adenylate kinase 98.2 1.9E-05 4.2E-10 72.1 11.4 141 40-255 1-142 (151)
89 PRK14526 adenylate kinase; Pro 98.1 2.7E-05 5.8E-10 75.7 12.4 155 37-256 2-178 (211)
90 COG0703 AroK Shikimate kinase 98.1 1.2E-05 2.6E-10 75.0 8.8 26 36-61 3-28 (172)
91 PRK12338 hypothetical protein; 98.1 0.00015 3.3E-09 74.4 17.3 43 34-80 3-45 (319)
92 KOG3062|consensus 98.1 1.6E-05 3.5E-10 76.4 9.1 74 171-256 73-146 (281)
93 KOG3354|consensus 98.0 0.0001 2.2E-09 67.2 12.3 153 32-265 9-168 (191)
94 PRK06696 uridine kinase; Valid 98.0 4.4E-05 9.5E-10 74.6 10.9 40 32-71 19-58 (223)
95 PRK13947 shikimate kinase; Pro 98.0 3.6E-05 7.9E-10 71.5 9.8 39 37-80 3-41 (171)
96 PRK00625 shikimate kinase; Pro 98.0 3.2E-05 6.9E-10 72.8 9.1 28 37-64 2-29 (173)
97 PRK00131 aroK shikimate kinase 97.9 3.8E-05 8.2E-10 71.1 8.9 43 33-80 2-44 (175)
98 PLN02459 probable adenylate ki 97.9 0.0001 2.2E-09 73.5 11.7 160 34-256 28-220 (261)
99 COG0563 Adk Adenylate kinase a 97.9 0.0001 2.2E-09 69.6 10.9 73 174-256 80-153 (178)
100 cd01672 TMPK Thymidine monopho 97.9 0.0004 8.8E-09 65.4 14.5 32 36-67 1-32 (200)
101 PRK05057 aroK shikimate kinase 97.8 0.00026 5.6E-09 66.4 11.5 41 35-80 4-44 (172)
102 PRK13949 shikimate kinase; Pro 97.7 0.00016 3.4E-09 67.7 9.5 31 37-67 3-33 (169)
103 PRK06217 hypothetical protein; 97.7 0.00029 6.2E-09 66.6 11.4 35 36-75 2-36 (183)
104 PRK07667 uridine kinase; Provi 97.7 0.0002 4.3E-09 68.4 10.0 42 33-74 15-56 (193)
105 PRK03731 aroL shikimate kinase 97.7 0.00016 3.5E-09 67.3 8.8 40 36-80 3-42 (171)
106 KOG3079|consensus 97.7 0.00059 1.3E-08 64.1 11.9 156 34-256 7-162 (195)
107 PRK04040 adenylate kinase; Pro 97.6 0.00042 9.1E-09 66.1 10.6 42 35-79 2-43 (188)
108 TIGR02173 cyt_kin_arch cytidyl 97.6 0.0005 1.1E-08 63.5 10.6 37 36-77 1-37 (171)
109 PRK00698 tmk thymidylate kinas 97.6 0.002 4.3E-08 61.4 14.8 30 35-64 3-32 (205)
110 PRK14730 coaE dephospho-CoA ki 97.6 0.00024 5.2E-09 68.1 8.2 38 37-79 3-40 (195)
111 PF08303 tRNA_lig_kinase: tRNA 97.5 0.0014 3E-08 60.7 12.4 88 169-257 52-151 (168)
112 PRK07261 topology modulation p 97.5 0.00038 8.3E-09 65.2 8.7 24 37-60 2-25 (171)
113 COG0541 Ffh Signal recognition 97.5 0.00093 2E-08 70.4 12.1 44 32-75 97-140 (451)
114 PRK08154 anaerobic benzoate ca 97.5 0.0004 8.8E-09 71.3 8.7 46 30-80 128-173 (309)
115 PRK08233 hypothetical protein; 97.5 0.0017 3.7E-08 60.5 12.3 26 35-60 3-28 (182)
116 cd02028 UMPK_like Uridine mono 97.4 0.00065 1.4E-08 64.2 9.2 40 37-76 1-40 (179)
117 COG3265 GntK Gluconate kinase 97.4 0.0014 2.9E-08 59.6 10.5 79 171-270 66-144 (161)
118 TIGR00041 DTMP_kinase thymidyl 97.4 0.004 8.8E-08 59.0 14.2 33 35-67 3-35 (195)
119 PRK04220 2-phosphoglycerate ki 97.4 0.0017 3.7E-08 66.1 12.0 45 29-77 86-130 (301)
120 PRK13951 bifunctional shikimat 97.4 0.0003 6.4E-09 76.7 6.7 39 37-80 2-40 (488)
121 PRK00081 coaE dephospho-CoA ki 97.4 0.0014 3E-08 62.7 10.4 38 36-79 3-40 (194)
122 COG4185 Uncharacterized protei 97.3 0.013 2.8E-07 54.0 15.5 84 169-256 66-149 (187)
123 PRK08118 topology modulation p 97.3 0.00089 1.9E-08 62.5 8.2 25 37-61 3-27 (167)
124 PRK00300 gmk guanylate kinase; 97.3 0.0014 3.1E-08 62.7 9.2 27 34-60 4-30 (205)
125 cd02020 CMPK Cytidine monophos 97.2 0.0019 4.1E-08 57.9 9.3 25 37-61 1-25 (147)
126 TIGR00152 dephospho-CoA kinase 97.2 0.001 2.2E-08 63.0 7.5 38 37-79 1-38 (188)
127 PRK08356 hypothetical protein; 97.2 0.0052 1.1E-07 58.6 12.4 33 35-73 5-37 (195)
128 PRK06547 hypothetical protein; 97.2 0.0038 8.2E-08 58.7 11.1 29 32-60 12-40 (172)
129 PRK13973 thymidylate kinase; P 97.2 0.0036 7.9E-08 60.7 11.2 34 35-68 3-36 (213)
130 PRK14731 coaE dephospho-CoA ki 97.2 0.0046 9.9E-08 59.8 11.7 41 33-79 3-43 (208)
131 PF13207 AAA_17: AAA domain; P 97.2 0.00026 5.5E-09 61.7 2.6 33 37-74 1-33 (121)
132 cd07061 HP_HAP_like Histidine 97.1 0.00047 1E-08 67.9 4.7 57 298-363 5-71 (242)
133 cd02022 DPCK Dephospho-coenzym 97.1 0.0019 4.1E-08 60.9 8.7 37 37-79 1-37 (179)
134 PRK06761 hypothetical protein; 97.1 0.00093 2E-08 67.6 6.9 37 35-71 3-39 (282)
135 COG1102 Cmk Cytidylate kinase 97.1 0.0066 1.4E-07 56.0 11.6 40 36-80 1-40 (179)
136 TIGR01425 SRP54_euk signal rec 97.1 0.0016 3.4E-08 69.6 8.4 43 33-75 98-140 (429)
137 TIGR03263 guanyl_kin guanylate 97.1 0.0027 5.9E-08 59.3 9.1 26 36-61 2-27 (180)
138 PF00448 SRP54: SRP54-type pro 97.1 0.013 2.8E-07 56.2 13.9 41 35-75 1-41 (196)
139 PRK04182 cytidylate kinase; Pr 97.1 0.0011 2.4E-08 61.6 6.4 26 36-61 1-26 (180)
140 PRK10867 signal recognition pa 97.1 0.0019 4.1E-08 69.2 8.7 43 33-75 98-141 (433)
141 PRK05480 uridine/cytidine kina 97.0 0.0062 1.4E-07 58.6 11.5 39 33-73 4-42 (209)
142 PRK14021 bifunctional shikimat 97.0 0.0025 5.4E-08 70.5 9.7 32 35-66 6-37 (542)
143 PLN02199 shikimate kinase 97.0 0.0042 9.1E-08 63.1 10.2 29 35-63 102-130 (303)
144 TIGR02322 phosphon_PhnN phosph 97.0 0.0028 6.1E-08 59.3 8.4 27 36-62 2-28 (179)
145 PLN02842 nucleotide kinase 97.0 0.009 1.9E-07 65.0 13.1 92 175-270 79-187 (505)
146 KOG2134|consensus 97.0 0.0013 2.9E-08 67.9 6.2 49 172-221 320-368 (422)
147 PF01121 CoaE: Dephospho-CoA k 97.0 0.0041 9E-08 58.9 9.1 157 36-250 1-160 (180)
148 PRK00771 signal recognition pa 96.9 0.009 1.9E-07 64.2 12.5 43 33-75 93-135 (437)
149 PRK10078 ribose 1,5-bisphospho 96.9 0.0025 5.4E-08 60.3 7.5 25 36-60 3-27 (186)
150 PRK14738 gmk guanylate kinase; 96.9 0.0071 1.5E-07 58.4 10.4 28 31-58 9-36 (206)
151 PRK14734 coaE dephospho-CoA ki 96.9 0.0058 1.3E-07 58.8 9.7 36 37-78 3-38 (200)
152 PRK14733 coaE dephospho-CoA ki 96.8 0.0055 1.2E-07 59.2 8.9 41 33-78 4-44 (204)
153 PRK14737 gmk guanylate kinase; 96.8 0.0069 1.5E-07 57.6 9.4 26 34-59 3-28 (186)
154 KOG0780|consensus 96.8 0.0069 1.5E-07 62.9 9.8 44 32-75 98-141 (483)
155 PRK03333 coaE dephospho-CoA ki 96.8 0.0025 5.4E-08 67.8 6.9 37 37-79 3-39 (395)
156 PRK05416 glmZ(sRNA)-inactivati 96.7 0.02 4.4E-07 58.3 12.2 46 172-219 57-104 (288)
157 KOG3220|consensus 96.7 0.03 6.5E-07 53.5 12.1 174 37-270 3-180 (225)
158 TIGR00064 ftsY signal recognit 96.6 0.0072 1.6E-07 61.0 8.5 42 34-75 71-112 (272)
159 TIGR00959 ffh signal recogniti 96.6 0.0076 1.7E-07 64.6 8.8 43 33-75 97-140 (428)
160 PRK03839 putative kinase; Prov 96.5 0.0012 2.5E-08 62.1 1.6 27 37-63 2-28 (180)
161 PRK14732 coaE dephospho-CoA ki 96.4 0.0092 2E-07 57.3 7.4 36 37-78 1-36 (196)
162 PLN02422 dephospho-CoA kinase 96.4 0.019 4.2E-07 56.5 9.7 37 37-79 3-39 (232)
163 PRK13975 thymidylate kinase; P 96.4 0.059 1.3E-06 50.9 12.9 27 35-61 2-28 (196)
164 KOG1533|consensus 96.4 0.051 1.1E-06 53.1 11.9 129 37-213 4-146 (290)
165 PRK10416 signal recognition pa 96.3 0.041 8.9E-07 56.8 12.1 42 34-75 113-154 (318)
166 PLN02924 thymidylate kinase 96.3 0.023 5.1E-07 55.5 9.6 36 34-69 15-50 (220)
167 COG3896 Chloramphenicol 3-O-ph 96.3 0.032 6.9E-07 51.4 9.6 55 170-229 112-167 (205)
168 PTZ00451 dephospho-CoA kinase; 96.2 0.029 6.4E-07 55.7 10.0 39 36-79 2-40 (244)
169 PRK14974 cell division protein 96.2 0.041 8.9E-07 57.2 11.5 43 33-75 138-180 (336)
170 COG0237 CoaE Dephospho-CoA kin 96.2 0.1 2.2E-06 50.3 13.3 38 35-78 2-39 (201)
171 PRK13974 thymidylate kinase; P 96.2 0.099 2.2E-06 50.6 13.4 28 35-62 3-30 (212)
172 cd01673 dNK Deoxyribonucleosid 96.1 0.044 9.5E-07 51.8 10.4 24 37-60 1-24 (193)
173 cd02023 UMPK Uridine monophosp 96.1 0.061 1.3E-06 51.2 11.3 37 37-75 1-37 (198)
174 KOG0635|consensus 96.1 0.028 6E-07 51.4 8.0 42 34-75 30-71 (207)
175 cd03115 SRP The signal recogni 96.1 0.18 3.8E-06 46.9 13.8 39 37-75 2-40 (173)
176 smart00072 GuKc Guanylate kina 96.0 0.043 9.4E-07 51.8 9.5 24 36-59 3-26 (184)
177 TIGR00235 udk uridine kinase. 96.0 0.083 1.8E-06 50.8 11.6 27 34-60 5-31 (207)
178 KOG4238|consensus 96.0 0.037 8.1E-07 56.8 9.2 44 35-78 50-93 (627)
179 cd02034 CooC The accessory pro 95.9 0.023 5.1E-07 49.8 6.9 35 38-72 2-36 (116)
180 PF01202 SKI: Shikimate kinase 95.9 0.0056 1.2E-07 56.4 3.1 23 44-66 1-23 (158)
181 PRK00023 cmk cytidylate kinase 95.9 0.059 1.3E-06 52.8 10.1 30 35-64 4-33 (225)
182 PF00328 His_Phos_2: Histidine 95.9 0.012 2.6E-07 60.1 5.5 46 318-363 60-114 (347)
183 PTZ00301 uridine kinase; Provi 95.8 0.12 2.5E-06 50.3 11.5 40 36-75 4-45 (210)
184 PRK12724 flagellar biosynthesi 95.7 0.18 3.9E-06 53.9 13.3 42 34-75 222-264 (432)
185 COG2074 2-phosphoglycerate kin 95.6 0.043 9.3E-07 54.3 7.7 144 31-222 85-230 (299)
186 cd02019 NK Nucleoside/nucleoti 95.6 0.0087 1.9E-07 47.3 2.5 23 37-59 1-23 (69)
187 PF13238 AAA_18: AAA domain; P 95.6 0.0067 1.4E-07 52.8 2.0 22 38-59 1-22 (129)
188 PRK00091 miaA tRNA delta(2)-is 95.5 0.074 1.6E-06 54.7 9.6 34 35-73 4-37 (307)
189 PRK13768 GTPase; Provisional 95.5 0.18 3.9E-06 50.3 12.0 40 35-74 2-41 (253)
190 PRK13477 bifunctional pantoate 95.4 0.067 1.4E-06 58.6 9.1 39 34-77 283-321 (512)
191 PRK11889 flhF flagellar biosyn 95.3 0.36 7.8E-06 51.3 14.0 42 34-75 240-281 (436)
192 KOG0739|consensus 95.2 0.079 1.7E-06 53.6 8.2 23 37-59 168-190 (439)
193 PF00485 PRK: Phosphoribulokin 95.1 0.017 3.8E-07 54.9 3.4 72 171-255 106-177 (194)
194 PRK12377 putative replication 95.1 0.069 1.5E-06 53.2 7.5 39 33-71 99-137 (248)
195 cd02030 NDUO42 NADH:Ubiquinone 95.0 0.28 6E-06 47.7 11.6 26 37-62 1-26 (219)
196 PF02223 Thymidylate_kin: Thym 95.0 0.12 2.6E-06 48.5 8.8 25 41-65 2-26 (186)
197 COG1618 Predicted nucleotide k 95.0 0.021 4.4E-07 52.9 3.3 43 33-75 3-45 (179)
198 COG0572 Udk Uridine kinase [Nu 95.0 0.27 5.7E-06 47.9 11.0 25 36-60 9-33 (218)
199 PF00004 AAA: ATPase family as 95.0 0.013 2.9E-07 51.0 2.0 23 38-60 1-23 (132)
200 PRK13695 putative NTPase; Prov 94.9 0.1 2.3E-06 48.6 7.8 29 36-64 1-29 (174)
201 PRK08939 primosomal protein Dn 94.7 0.18 3.9E-06 51.8 9.7 38 35-72 156-193 (306)
202 PRK15453 phosphoribulokinase; 94.7 0.028 6.1E-07 56.8 3.6 43 34-76 4-46 (290)
203 PRK08181 transposase; Validate 94.7 0.16 3.5E-06 51.2 9.0 38 30-67 101-138 (269)
204 KOG3347|consensus 94.6 0.15 3.3E-06 46.7 7.7 25 36-60 8-32 (176)
205 cd01120 RecA-like_NTPases RecA 94.6 0.21 4.6E-06 44.7 8.8 34 38-71 2-35 (165)
206 COG1428 Deoxynucleoside kinase 94.4 0.73 1.6E-05 44.6 12.3 28 33-60 2-29 (216)
207 COG1484 DnaC DNA replication p 94.4 0.11 2.3E-06 52.0 7.1 42 31-72 101-142 (254)
208 TIGR00174 miaA tRNA isopenteny 94.3 0.28 6E-06 50.0 9.8 31 37-72 1-31 (287)
209 PRK05439 pantothenate kinase; 94.2 0.044 9.6E-07 56.3 3.8 43 31-73 82-126 (311)
210 PRK14490 putative bifunctional 94.2 0.04 8.6E-07 58.1 3.5 58 31-101 1-59 (369)
211 PRK12726 flagellar biosynthesi 94.2 0.25 5.5E-06 52.1 9.4 42 34-75 205-246 (407)
212 cd01124 KaiC KaiC is a circadi 94.1 0.44 9.5E-06 44.4 10.3 34 38-71 2-35 (187)
213 cd02035 ArsA ArsA ATPase funct 94.0 1.3 2.9E-05 42.8 13.8 39 37-75 1-39 (217)
214 TIGR03499 FlhF flagellar biosy 93.9 0.054 1.2E-06 55.0 3.8 44 32-75 191-236 (282)
215 COG0552 FtsY Signal recognitio 93.9 0.93 2E-05 46.8 12.6 43 33-75 137-179 (340)
216 KOG0744|consensus 93.9 0.082 1.8E-06 54.1 5.0 27 34-60 176-202 (423)
217 cd02024 NRK1 Nicotinamide ribo 93.9 0.034 7.3E-07 53.0 2.1 32 37-72 1-32 (187)
218 COG0125 Tmk Thymidylate kinase 93.8 0.86 1.9E-05 44.2 11.7 32 35-66 3-34 (208)
219 COG1132 MdlB ABC-type multidru 93.8 0.44 9.6E-06 53.0 11.2 148 33-205 353-519 (567)
220 PRK06893 DNA replication initi 93.7 0.6 1.3E-05 45.7 10.7 34 36-69 40-73 (229)
221 smart00382 AAA ATPases associa 93.7 0.045 9.8E-07 47.1 2.4 37 35-71 2-38 (148)
222 cd02029 PRK_like Phosphoribulo 93.6 0.048 1E-06 54.8 2.7 40 37-76 1-40 (277)
223 TIGR02237 recomb_radB DNA repa 93.5 0.45 9.7E-06 45.5 9.3 28 34-61 11-38 (209)
224 PRK13976 thymidylate kinase; P 93.5 0.3 6.6E-06 47.3 8.0 27 36-62 1-27 (209)
225 PRK09435 membrane ATPase/prote 93.5 0.068 1.5E-06 55.5 3.7 45 31-75 52-96 (332)
226 PRK09270 nucleoside triphospha 93.4 0.076 1.6E-06 52.0 3.8 41 32-72 30-71 (229)
227 COG1703 ArgK Putative periplas 93.3 0.18 4E-06 51.1 6.2 52 29-80 45-96 (323)
228 PRK06526 transposase; Provisio 93.2 0.29 6.2E-06 49.0 7.6 36 29-64 92-127 (254)
229 cd04163 Era Era subfamily. Er 93.2 0.67 1.5E-05 41.2 9.4 41 170-211 83-123 (168)
230 COG2019 AdkA Archaeal adenylat 93.2 0.08 1.7E-06 49.3 3.2 37 35-75 4-40 (189)
231 PRK11176 lipid transporter ATP 93.2 0.63 1.4E-05 51.9 11.1 28 34-61 368-395 (582)
232 cd02025 PanK Pantothenate kina 93.2 0.06 1.3E-06 52.6 2.6 35 38-72 2-38 (220)
233 cd01394 radB RadB. The archaea 93.1 0.55 1.2E-05 45.2 9.4 28 34-61 18-45 (218)
234 PRK11308 dppF dipeptide transp 93.1 0.72 1.6E-05 47.8 10.7 29 33-61 39-67 (327)
235 PRK11160 cysteine/glutathione 93.1 0.56 1.2E-05 52.4 10.5 142 33-205 364-529 (574)
236 KOG0738|consensus 93.0 1.6 3.5E-05 46.0 12.7 31 37-72 247-277 (491)
237 KOG4622|consensus 93.0 0.61 1.3E-05 44.5 8.8 50 169-221 91-142 (291)
238 PF01695 IstB_IS21: IstB-like 93.0 0.076 1.6E-06 50.1 3.0 44 29-72 41-84 (178)
239 COG3842 PotA ABC-type spermidi 93.0 0.23 5E-06 51.8 6.8 150 36-215 32-201 (352)
240 cd00878 Arf_Arl Arf (ADP-ribos 93.0 0.12 2.6E-06 46.5 4.2 20 38-57 2-21 (158)
241 PF03029 ATP_bind_1: Conserved 92.9 0.053 1.1E-06 53.7 1.9 36 40-75 1-36 (238)
242 TIGR01842 type_I_sec_PrtD type 92.9 0.67 1.5E-05 51.3 10.8 28 34-61 343-370 (544)
243 PLN02165 adenylate isopentenyl 92.9 0.22 4.8E-06 51.6 6.4 34 35-73 43-76 (334)
244 PRK05703 flhF flagellar biosyn 92.9 2 4.4E-05 46.2 14.0 41 35-75 221-263 (424)
245 TIGR02868 CydC thiol reductant 92.8 0.55 1.2E-05 51.7 9.9 29 33-61 359-387 (529)
246 PRK11174 cysteine/glutathione 92.8 0.78 1.7E-05 51.2 11.1 139 33-195 374-529 (588)
247 TIGR00176 mobB molybdopterin-g 92.7 0.079 1.7E-06 48.9 2.6 33 37-69 1-33 (155)
248 PHA00729 NTP-binding motif con 92.7 0.084 1.8E-06 51.7 2.8 25 36-60 18-42 (226)
249 PF07728 AAA_5: AAA domain (dy 92.7 0.083 1.8E-06 47.1 2.6 23 38-60 2-24 (139)
250 PLN02796 D-glycerate 3-kinase 92.7 0.093 2E-06 54.6 3.3 40 33-72 98-137 (347)
251 PF00625 Guanylate_kin: Guanyl 92.6 0.27 5.9E-06 46.2 6.2 66 172-256 93-158 (183)
252 PRK09183 transposase/IS protei 92.6 0.58 1.3E-05 46.9 8.8 41 29-69 96-136 (259)
253 TIGR01618 phage_P_loop phage n 92.5 0.89 1.9E-05 44.5 9.7 23 34-56 11-33 (220)
254 KOG3720|consensus 92.4 0.18 4E-06 53.9 5.3 66 298-363 37-125 (411)
255 PF05729 NACHT: NACHT domain 92.4 0.092 2E-06 47.5 2.6 25 37-61 2-26 (166)
256 PRK07933 thymidylate kinase; V 92.4 0.11 2.3E-06 50.6 3.1 34 36-69 1-34 (213)
257 cd03116 MobB Molybdenum is an 92.4 0.11 2.5E-06 48.1 3.1 35 37-71 3-37 (159)
258 PRK08084 DNA replication initi 92.3 2.2 4.7E-05 42.0 12.4 36 34-69 44-79 (235)
259 TIGR02857 CydD thiol reductant 92.3 0.86 1.9E-05 50.2 10.6 139 33-194 346-501 (529)
260 TIGR03375 type_I_sec_LssB type 92.2 0.57 1.2E-05 53.5 9.3 130 35-194 491-644 (694)
261 TIGR03797 NHPM_micro_ABC2 NHPM 92.2 0.85 1.8E-05 52.0 10.7 136 33-199 477-635 (686)
262 PF06309 Torsin: Torsin; Inte 92.2 0.15 3.3E-06 45.4 3.5 36 32-67 50-85 (127)
263 cd01122 GP4d_helicase GP4d_hel 92.1 0.84 1.8E-05 45.5 9.3 38 34-71 29-67 (271)
264 cd04161 Arl2l1_Arl13_like Arl2 92.1 0.24 5.3E-06 45.5 5.1 20 38-57 2-21 (167)
265 cd04149 Arf6 Arf6 subfamily. 92.1 0.33 7.1E-06 44.8 5.9 23 34-56 8-30 (168)
266 TIGR00554 panK_bact pantothena 92.0 0.15 3.2E-06 52.0 3.8 41 32-72 59-101 (290)
267 PRK10790 putative multidrug tr 92.0 1 2.2E-05 50.3 10.9 153 33-209 365-534 (592)
268 PRK07764 DNA polymerase III su 92.0 0.63 1.4E-05 54.1 9.2 28 33-60 35-62 (824)
269 PRK14960 DNA polymerase III su 92.0 1.8 4E-05 48.9 12.5 29 33-61 35-63 (702)
270 TIGR01193 bacteriocin_ABC ABC- 92.0 0.73 1.6E-05 52.7 9.8 131 35-195 500-655 (708)
271 PLN03025 replication factor C 91.9 0.91 2E-05 46.7 9.6 24 37-60 36-59 (319)
272 TIGR03796 NHPM_micro_ABC1 NHPM 91.9 0.72 1.6E-05 52.8 9.7 139 34-203 504-666 (710)
273 TIGR00017 cmk cytidylate kinas 91.9 0.09 2E-06 51.3 2.0 28 35-62 2-29 (217)
274 COG2274 SunT ABC-type bacterio 91.9 0.2 4.4E-06 57.2 5.0 147 35-205 499-663 (709)
275 PRK13657 cyclic beta-1,2-gluca 91.9 0.97 2.1E-05 50.5 10.5 146 34-205 360-525 (588)
276 cd01983 Fer4_NifH The Fer4_Nif 91.9 0.13 2.8E-06 41.7 2.7 33 38-70 2-34 (99)
277 PRK14086 dnaA chromosomal repl 91.9 2.7 5.9E-05 47.1 13.6 25 37-61 316-340 (617)
278 TIGR00150 HI0065_YjeE ATPase, 91.9 0.12 2.6E-06 46.5 2.6 32 31-62 18-49 (133)
279 PF00910 RNA_helicase: RNA hel 91.9 0.087 1.9E-06 45.2 1.6 23 38-60 1-23 (107)
280 PRK08727 hypothetical protein; 91.9 3.9 8.5E-05 40.1 13.6 35 36-70 42-76 (233)
281 PF02421 FeoB_N: Ferrous iron 91.8 0.29 6.3E-06 45.3 5.1 23 37-59 2-24 (156)
282 TIGR00750 lao LAO/AO transport 91.8 0.16 3.4E-06 52.0 3.8 44 32-75 31-74 (300)
283 TIGR00960 3a0501s02 Type II (G 91.7 1.8 3.8E-05 41.6 10.8 28 33-60 27-54 (216)
284 PRK13886 conjugal transfer pro 91.7 0.94 2E-05 44.9 8.9 40 35-74 3-42 (241)
285 cd03223 ABCD_peroxisomal_ALDP 91.6 0.78 1.7E-05 42.5 7.9 29 33-61 25-53 (166)
286 PRK10751 molybdopterin-guanine 91.6 0.15 3.3E-06 47.9 3.0 32 35-66 6-37 (173)
287 PRK06731 flhF flagellar biosyn 91.6 2.5 5.4E-05 42.7 12.0 40 36-75 76-115 (270)
288 TIGR00958 3a01208 Conjugate Tr 91.5 1.2 2.7E-05 51.0 11.0 28 34-61 506-533 (711)
289 PLN02840 tRNA dimethylallyltra 91.5 0.34 7.4E-06 51.8 6.0 28 34-61 20-47 (421)
290 PF09848 DUF2075: Uncharacteri 91.5 0.74 1.6E-05 48.1 8.5 25 35-59 1-25 (352)
291 PRK14955 DNA polymerase III su 91.5 2.5 5.5E-05 44.9 12.7 29 33-61 36-64 (397)
292 TIGR03598 GTPase_YsxC ribosome 91.5 1.1 2.5E-05 41.5 9.0 25 33-57 16-40 (179)
293 smart00763 AAA_PrkA PrkA AAA d 91.5 0.13 2.9E-06 53.7 2.8 28 34-61 77-104 (361)
294 cd01895 EngA2 EngA2 subfamily. 91.5 0.53 1.1E-05 42.4 6.5 40 171-211 86-125 (174)
295 PRK09376 rho transcription ter 91.4 0.78 1.7E-05 48.7 8.4 33 30-62 164-196 (416)
296 PLN02748 tRNA dimethylallyltra 91.4 0.48 1E-05 51.4 7.1 35 33-72 20-54 (468)
297 PLN03046 D-glycerate 3-kinase; 91.4 0.15 3.2E-06 54.4 3.1 39 34-72 211-249 (460)
298 cd00009 AAA The AAA+ (ATPases 91.4 0.19 4.1E-06 43.7 3.3 27 34-60 18-44 (151)
299 PLN02348 phosphoribulokinase 91.3 0.18 4E-06 53.3 3.6 30 32-61 46-75 (395)
300 COG1936 Predicted nucleotide k 91.3 0.12 2.6E-06 48.4 2.0 25 36-61 1-25 (180)
301 PRK12727 flagellar biosynthesi 91.2 1.6 3.4E-05 48.2 10.8 45 31-75 346-392 (559)
302 PRK14956 DNA polymerase III su 91.2 2.1 4.6E-05 46.6 11.7 28 34-61 39-66 (484)
303 PRK09361 radB DNA repair and r 91.2 1.1 2.3E-05 43.5 8.8 26 34-59 22-47 (225)
304 PRK08903 DnaA regulatory inact 91.2 0.2 4.4E-06 48.7 3.6 39 33-71 40-78 (227)
305 PRK14959 DNA polymerase III su 91.2 2.5 5.5E-05 47.5 12.5 29 33-61 36-64 (624)
306 PF03796 DnaB_C: DnaB-like hel 91.1 0.89 1.9E-05 45.2 8.3 39 34-72 18-57 (259)
307 smart00178 SAR Sar1p-like memb 91.1 0.42 9.2E-06 44.8 5.6 24 34-57 16-39 (184)
308 PRK08099 bifunctional DNA-bind 91.1 0.35 7.6E-06 51.6 5.6 28 34-61 218-245 (399)
309 COG5324 Uncharacterized conser 91.1 1.7 3.7E-05 46.7 10.4 91 166-257 423-514 (758)
310 PRK14949 DNA polymerase III su 91.1 2.2 4.8E-05 49.7 12.2 29 33-61 36-64 (944)
311 TIGR02204 MsbA_rel ABC transpo 91.1 1.3 2.8E-05 49.3 10.3 29 33-61 364-392 (576)
312 PHA02544 44 clamp loader, smal 91.0 3.8 8.3E-05 41.7 13.0 29 32-60 40-68 (316)
313 PRK11519 tyrosine kinase; Prov 91.0 1 2.2E-05 51.8 9.6 157 34-222 526-683 (719)
314 PRK14088 dnaA chromosomal repl 91.0 5.5 0.00012 43.1 14.7 27 37-63 132-158 (440)
315 PF13481 AAA_25: AAA domain; P 91.0 1.2 2.5E-05 41.8 8.5 29 31-59 28-56 (193)
316 PRK10522 multidrug transporter 91.0 0.56 1.2E-05 52.0 7.3 27 34-60 348-374 (547)
317 PF03266 NTPase_1: NTPase; In 91.0 0.15 3.2E-06 47.8 2.3 27 37-63 1-27 (168)
318 PRK00149 dnaA chromosomal repl 90.9 4.1 8.8E-05 44.1 13.8 26 37-62 150-175 (450)
319 KOG1534|consensus 90.9 1.5 3.2E-05 42.6 8.9 41 35-75 3-43 (273)
320 cd03114 ArgK-like The function 90.9 0.16 3.5E-06 46.4 2.5 38 38-75 2-39 (148)
321 PRK09087 hypothetical protein; 90.9 1.1 2.4E-05 43.9 8.5 24 36-59 45-68 (226)
322 KOG0058|consensus 90.9 0.3 6.6E-06 54.8 5.0 56 35-91 494-556 (716)
323 COG4988 CydD ABC-type transpor 90.9 1.6 3.4E-05 48.1 10.3 57 33-90 345-408 (559)
324 PF13173 AAA_14: AAA domain 90.9 1.3 2.9E-05 38.9 8.3 25 36-60 3-27 (128)
325 PRK12723 flagellar biosynthesi 90.9 0.19 4E-06 53.4 3.3 42 34-75 173-218 (388)
326 PRK07994 DNA polymerase III su 90.8 2.3 5E-05 48.1 11.9 28 34-61 37-64 (647)
327 PRK07004 replicative DNA helic 90.8 2.3 4.9E-05 46.3 11.6 55 17-72 195-251 (460)
328 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.17 3.7E-06 48.8 2.7 33 31-63 34-66 (226)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.7 1 2.2E-05 40.7 7.5 28 33-60 24-51 (144)
330 COG3839 MalK ABC-type sugar tr 90.7 1.6 3.4E-05 45.5 9.7 28 34-61 28-55 (338)
331 PRK06921 hypothetical protein; 90.6 1.4 3E-05 44.3 9.2 27 35-61 117-143 (266)
332 PRK04296 thymidine kinase; Pro 90.6 0.81 1.8E-05 43.5 7.1 35 36-70 3-37 (190)
333 cd00879 Sar1 Sar1 subfamily. 90.5 0.4 8.6E-06 44.8 4.9 24 34-57 18-41 (190)
334 PTZ00454 26S protease regulato 90.5 2.4 5.3E-05 45.2 11.3 28 33-60 177-204 (398)
335 PRK06645 DNA polymerase III su 90.5 2 4.4E-05 47.2 10.9 29 33-61 41-69 (507)
336 cd03258 ABC_MetN_methionine_tr 90.4 3.4 7.4E-05 40.1 11.5 30 33-62 29-58 (233)
337 cd03224 ABC_TM1139_LivF_branch 90.4 2 4.2E-05 41.4 9.7 29 33-61 24-52 (222)
338 TIGR02203 MsbA_lipidA lipid A 90.4 1.6 3.5E-05 48.4 10.3 134 33-196 356-514 (571)
339 PRK14493 putative bifunctional 90.4 0.28 6.1E-06 49.6 3.9 52 37-101 3-54 (274)
340 TIGR03709 PPK2_rel_1 polyphosp 90.3 4.3 9.4E-05 40.8 12.2 38 32-69 53-90 (264)
341 cd03269 ABC_putative_ATPase Th 90.2 3.8 8.2E-05 39.1 11.5 29 33-61 24-52 (210)
342 PRK07952 DNA replication prote 90.2 0.19 4.2E-06 49.9 2.6 35 36-70 100-134 (244)
343 TIGR02881 spore_V_K stage V sp 90.2 0.23 5E-06 49.6 3.1 30 34-63 41-70 (261)
344 TIGR00362 DnaA chromosomal rep 90.2 4.5 9.8E-05 43.0 13.1 26 36-61 137-162 (405)
345 TIGR03877 thermo_KaiC_1 KaiC d 90.2 4.6 0.0001 39.6 12.3 37 33-70 19-56 (237)
346 PRK10172 phosphoanhydride phos 90.2 1.7 3.7E-05 46.8 9.7 45 318-362 70-127 (436)
347 COG1855 ATPase (PilT family) [ 90.1 0.2 4.4E-06 53.3 2.7 30 35-64 263-292 (604)
348 TIGR01846 type_I_sec_HlyB type 90.1 1.7 3.7E-05 49.6 10.5 135 34-197 482-638 (694)
349 PF13191 AAA_16: AAA ATPase do 90.1 0.17 3.7E-06 46.8 2.0 32 31-62 20-51 (185)
350 PF03205 MobB: Molybdopterin g 90.1 0.25 5.5E-06 44.7 3.0 31 37-67 2-32 (140)
351 KOG3308|consensus 90.0 0.28 6.1E-06 47.0 3.3 42 36-95 5-46 (225)
352 PRK13409 putative ATPase RIL; 90.0 2.9 6.3E-05 47.0 11.9 49 12-60 65-124 (590)
353 PRK14494 putative molybdopteri 90.0 0.28 6E-06 48.3 3.3 33 37-69 3-35 (229)
354 TIGR02315 ABC_phnC phosphonate 90.0 3 6.4E-05 40.8 10.8 29 33-61 26-54 (243)
355 COG4615 PvdE ABC-type sideroph 89.9 1.2 2.5E-05 47.2 7.9 24 36-59 350-373 (546)
356 PRK05642 DNA replication initi 89.9 3.3 7.2E-05 40.7 11.0 32 36-67 46-77 (234)
357 TIGR01194 cyc_pep_trnsptr cycl 89.9 1.1 2.4E-05 49.8 8.5 28 34-61 367-394 (555)
358 KOG0055|consensus 89.9 0.77 1.7E-05 54.7 7.4 123 35-179 1016-1152(1228)
359 COG1136 SalX ABC-type antimicr 89.9 2.5 5.3E-05 41.6 9.8 29 33-61 29-57 (226)
360 PRK05973 replicative DNA helic 89.8 0.18 4E-06 49.8 2.0 40 33-72 62-101 (237)
361 COG4608 AppF ABC-type oligopep 89.8 1.3 2.8E-05 44.4 8.0 28 34-61 38-65 (268)
362 cd00071 GMPK Guanosine monopho 89.8 0.15 3.2E-06 45.9 1.3 24 37-60 1-24 (137)
363 cd00984 DnaB_C DnaB helicase C 89.8 1.1 2.5E-05 43.6 7.6 38 34-71 12-50 (242)
364 TIGR01650 PD_CobS cobaltochela 89.8 0.14 3E-06 53.0 1.1 34 30-63 59-92 (327)
365 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.7 3.3 7.1E-05 39.8 10.7 29 33-61 28-56 (218)
366 PRK15079 oligopeptide ABC tran 89.7 2.8 6.1E-05 43.5 10.8 28 33-60 45-72 (331)
367 COG0283 Cmk Cytidylate kinase 89.7 0.22 4.7E-06 48.3 2.3 32 36-67 5-36 (222)
368 cd03256 ABC_PhnC_transporter A 89.7 3.5 7.5E-05 40.2 11.0 28 33-60 25-52 (241)
369 PRK10247 putative ABC transpor 89.7 2.9 6.2E-05 40.6 10.3 28 33-60 31-58 (225)
370 PRK05896 DNA polymerase III su 89.6 5.1 0.00011 45.0 13.2 28 33-60 36-63 (605)
371 cd03233 ABC_PDR_domain1 The pl 89.6 1.6 3.5E-05 41.7 8.4 29 32-60 30-58 (202)
372 cd03261 ABC_Org_Solvent_Resist 89.6 3.6 7.9E-05 40.0 11.0 29 33-61 24-52 (235)
373 TIGR02673 FtsE cell division A 89.6 3.3 7.2E-05 39.6 10.6 29 33-61 26-54 (214)
374 PRK11022 dppD dipeptide transp 89.6 3.7 8E-05 42.5 11.5 29 32-60 30-58 (326)
375 cd03297 ABC_ModC_molybdenum_tr 89.6 4.7 0.0001 38.6 11.6 25 36-60 24-48 (214)
376 COG1222 RPT1 ATP-dependent 26S 89.6 0.35 7.6E-06 50.2 3.8 29 33-61 183-211 (406)
377 PRK05636 replicative DNA helic 89.5 1.9 4.1E-05 47.5 9.7 55 16-71 246-302 (505)
378 CHL00181 cbbX CbbX; Provisiona 89.5 0.3 6.5E-06 49.7 3.3 30 35-64 59-88 (287)
379 TIGR03608 L_ocin_972_ABC putat 89.5 3.6 7.8E-05 39.0 10.6 27 34-60 23-49 (206)
380 PRK05707 DNA polymerase III su 89.5 3.1 6.7E-05 43.2 10.8 65 170-237 105-170 (328)
381 CHL00195 ycf46 Ycf46; Provisio 89.4 0.78 1.7E-05 50.2 6.6 29 33-61 257-285 (489)
382 PF13521 AAA_28: AAA domain; P 89.4 0.16 3.5E-06 46.7 1.2 22 37-58 1-22 (163)
383 PRK13539 cytochrome c biogenes 89.4 5 0.00011 38.4 11.6 28 33-60 26-53 (207)
384 KOG1532|consensus 89.4 0.42 9E-06 48.0 4.1 44 32-75 16-59 (366)
385 cd04171 SelB SelB subfamily. 89.4 1 2.2E-05 40.3 6.5 22 36-57 1-22 (164)
386 cd03222 ABC_RNaseL_inhibitor T 89.4 1.4 3.1E-05 41.5 7.6 30 32-61 22-51 (177)
387 PRK14963 DNA polymerase III su 89.3 2 4.3E-05 47.3 9.8 29 33-61 34-62 (504)
388 PRK08116 hypothetical protein; 89.3 0.3 6.4E-06 49.2 3.1 39 34-72 113-151 (268)
389 KOG3078|consensus 89.3 3.7 7.9E-05 40.5 10.5 81 171-256 92-194 (235)
390 PRK06851 hypothetical protein; 89.3 0.39 8.5E-06 50.5 4.0 38 32-69 27-64 (367)
391 PRK14962 DNA polymerase III su 89.2 2.2 4.8E-05 46.5 10.0 27 34-60 35-61 (472)
392 PRK06620 hypothetical protein; 89.2 2.7 5.8E-05 40.8 9.6 25 36-60 45-69 (214)
393 PLN02772 guanylate kinase 89.2 1.9 4E-05 45.8 8.9 26 34-59 134-159 (398)
394 cd01891 TypA_BipA TypA (tyrosi 89.2 1.6 3.4E-05 41.2 7.8 21 37-57 4-24 (194)
395 PRK10419 nikE nickel transport 89.1 4.2 9.1E-05 40.7 11.3 28 33-60 36-63 (268)
396 PRK08760 replicative DNA helic 89.1 2.7 5.9E-05 45.9 10.6 56 16-72 210-267 (476)
397 TIGR00767 rho transcription te 89.1 1.4 2.9E-05 47.0 7.9 31 32-62 165-195 (415)
398 PRK14954 DNA polymerase III su 89.1 4.5 9.7E-05 45.7 12.5 29 33-61 36-64 (620)
399 cd03246 ABCC_Protease_Secretio 89.1 1.5 3.2E-05 40.7 7.5 28 33-60 26-53 (173)
400 COG0489 Mrp ATPases involved i 89.1 1.9 4.1E-05 43.4 8.7 43 33-75 56-98 (265)
401 TIGR03707 PPK2_P_aer polyphosp 89.1 8.3 0.00018 38.0 12.9 38 32-69 28-65 (230)
402 PRK14269 phosphate ABC transpo 89.1 4.3 9.3E-05 39.9 11.1 28 33-60 26-53 (246)
403 PRK11629 lolD lipoprotein tran 89.0 4.1 8.8E-05 39.7 10.9 28 33-60 33-60 (233)
404 KOG0055|consensus 89.0 1.6 3.4E-05 52.2 9.0 122 31-179 375-515 (1228)
405 PRK12323 DNA polymerase III su 89.0 4.4 9.6E-05 45.8 12.1 29 33-61 36-64 (700)
406 PRK10173 glucose-1-phosphatase 89.0 0.77 1.7E-05 49.2 6.1 45 318-362 68-125 (413)
407 cd03289 ABCC_CFTR2 The CFTR su 89.0 2.5 5.3E-05 42.8 9.5 29 32-60 27-55 (275)
408 PF07724 AAA_2: AAA domain (Cd 89.0 0.39 8.5E-06 45.0 3.5 41 35-75 3-44 (171)
409 cd03266 ABC_NatA_sodium_export 89.0 5.5 0.00012 38.2 11.6 28 33-60 29-56 (218)
410 cd03259 ABC_Carb_Solutes_like 89.0 4.6 0.0001 38.6 11.1 29 33-61 24-52 (213)
411 PRK14250 phosphate ABC transpo 88.9 2 4.2E-05 42.2 8.6 28 33-60 27-54 (241)
412 cd03264 ABC_drug_resistance_li 88.9 4.3 9.2E-05 38.8 10.7 24 37-60 27-50 (211)
413 cd04155 Arl3 Arl3 subfamily. 88.9 0.23 5E-06 45.4 1.8 33 26-58 5-37 (173)
414 TIGR03029 EpsG chain length de 88.8 1.9 4E-05 43.2 8.5 44 32-75 101-144 (274)
415 KOG0781|consensus 88.7 2 4.3E-05 46.3 8.7 33 32-64 375-407 (587)
416 cd03295 ABC_OpuCA_Osmoprotecti 88.7 5.5 0.00012 39.0 11.6 29 33-61 25-53 (242)
417 COG1118 CysA ABC-type sulfate/ 88.6 3.2 6.9E-05 42.6 9.8 29 33-61 26-54 (345)
418 PRK10584 putative ABC transpor 88.6 5.9 0.00013 38.3 11.6 29 33-61 34-62 (228)
419 KOG1384|consensus 88.6 3.2 6.9E-05 42.8 9.8 34 35-73 7-40 (348)
420 TIGR02880 cbbX_cfxQ probable R 88.5 0.29 6.3E-06 49.7 2.4 29 36-64 59-87 (284)
421 COG1100 GTPase SAR1 and relate 88.5 1.2 2.7E-05 42.4 6.7 25 36-60 6-30 (219)
422 PRK10908 cell division protein 88.5 6.1 0.00013 38.1 11.6 28 33-60 26-53 (222)
423 cd03226 ABC_cobalt_CbiO_domain 88.5 3.6 7.8E-05 39.1 9.9 29 33-61 24-52 (205)
424 TIGR00390 hslU ATP-dependent p 88.5 0.26 5.6E-06 52.6 2.1 30 34-63 46-75 (441)
425 cd03216 ABC_Carb_Monos_I This 88.5 1.6 3.5E-05 40.2 7.2 28 33-60 24-51 (163)
426 PRK11300 livG leucine/isoleuci 88.4 4.8 0.0001 39.7 11.1 29 33-61 29-57 (255)
427 TIGR01166 cbiO cobalt transpor 88.4 5.2 0.00011 37.5 10.8 29 33-61 16-44 (190)
428 COG0194 Gmk Guanylate kinase [ 88.4 3.4 7.3E-05 39.4 9.2 54 34-92 3-56 (191)
429 cd03225 ABC_cobalt_CbiO_domain 88.4 5.3 0.00011 38.1 11.0 29 33-61 25-53 (211)
430 TIGR03708 poly_P_AMP_trns poly 88.4 6.1 0.00013 43.3 12.5 40 32-71 37-76 (493)
431 PRK05595 replicative DNA helic 88.4 3.6 7.9E-05 44.5 10.9 56 16-72 182-239 (444)
432 cd03296 ABC_CysA_sulfate_impor 88.4 3.8 8.2E-05 40.0 10.2 29 33-61 26-54 (239)
433 KOG0737|consensus 88.3 0.97 2.1E-05 47.2 6.0 47 15-61 107-153 (386)
434 PRK10646 ADP-binding protein; 88.3 0.4 8.7E-06 44.2 2.9 31 31-61 24-54 (153)
435 PRK14723 flhF flagellar biosyn 88.3 6.9 0.00015 45.1 13.3 41 35-75 185-227 (767)
436 COG4136 ABC-type uncharacteriz 88.3 4.6 0.0001 37.4 9.6 35 171-206 152-192 (213)
437 PF03668 ATP_bind_2: P-loop AT 88.2 6.1 0.00013 40.1 11.5 18 37-54 3-20 (284)
438 TIGR00954 3a01203 Peroxysomal 88.2 4.1 8.8E-05 46.4 11.6 50 147-205 584-635 (659)
439 cd03293 ABC_NrtD_SsuB_transpor 88.2 5.9 0.00013 38.1 11.3 29 33-61 28-56 (220)
440 TIGR03880 KaiC_arch_3 KaiC dom 88.2 12 0.00025 36.2 13.4 25 35-59 16-40 (224)
441 PRK07003 DNA polymerase III su 88.2 3.3 7.1E-05 47.5 10.5 29 33-61 36-64 (830)
442 TIGR01188 drrA daunorubicin re 88.1 5.1 0.00011 40.8 11.3 29 33-61 17-45 (302)
443 TIGR01241 FtsH_fam ATP-depende 88.1 6 0.00013 43.4 12.5 28 33-60 86-113 (495)
444 COG2256 MGS1 ATPase related to 88.1 2.5 5.3E-05 44.8 8.9 30 32-61 45-74 (436)
445 PF07726 AAA_3: ATPase family 88.1 0.17 3.7E-06 45.3 0.4 24 38-61 2-25 (131)
446 TIGR01186 proV glycine betaine 88.1 5.4 0.00012 42.1 11.6 29 33-61 17-45 (363)
447 cd03234 ABCG_White The White s 88.1 7.1 0.00015 37.8 11.8 28 33-60 31-58 (226)
448 PRK14965 DNA polymerase III su 88.1 5.8 0.00013 44.4 12.5 29 33-61 36-64 (576)
449 PRK14729 miaA tRNA delta(2)-is 88.1 1.7 3.6E-05 44.6 7.6 37 34-76 3-42 (300)
450 PRK12608 transcription termina 87.9 1.7 3.7E-05 45.9 7.7 32 31-62 129-160 (380)
451 PRK13536 nodulation factor exp 87.9 6.1 0.00013 41.2 11.9 30 33-62 65-94 (340)
452 PRK11153 metN DL-methionine tr 87.9 5.4 0.00012 41.6 11.5 29 33-61 29-57 (343)
453 PRK07471 DNA polymerase III su 87.9 2.7 5.9E-05 44.3 9.3 32 29-60 35-66 (365)
454 TIGR03410 urea_trans_UrtE urea 87.9 2.8 6.1E-05 40.6 8.8 29 33-61 24-52 (230)
455 PRK15177 Vi polysaccharide exp 87.9 3.6 7.9E-05 39.6 9.6 29 33-61 11-39 (213)
456 PRK00089 era GTPase Era; Revie 87.9 2.2 4.8E-05 43.1 8.4 22 36-57 6-27 (292)
457 TIGR03864 PQQ_ABC_ATP ABC tran 87.8 7.5 0.00016 37.8 11.9 29 33-61 25-53 (236)
458 cd03292 ABC_FtsE_transporter F 87.8 5.9 0.00013 37.8 10.9 29 33-61 25-53 (214)
459 TIGR02211 LolD_lipo_ex lipopro 87.8 5.4 0.00012 38.4 10.7 28 33-60 29-56 (221)
460 COG1116 TauB ABC-type nitrate/ 87.7 3 6.4E-05 41.4 8.8 51 146-205 131-187 (248)
461 PTZ00265 multidrug resistance 87.7 2.9 6.2E-05 52.0 10.7 29 33-61 1192-1220(1466)
462 PRK11231 fecE iron-dicitrate t 87.7 5.8 0.00013 39.2 11.1 30 33-62 26-55 (255)
463 TIGR01192 chvA glucan exporter 87.7 3.1 6.8E-05 46.6 10.2 30 33-62 359-388 (585)
464 COG0470 HolB ATPase involved i 87.7 3 6.5E-05 42.3 9.3 30 31-60 20-49 (325)
465 PRK03003 GTP-binding protein D 87.7 1.1 2.4E-05 48.8 6.4 41 170-211 118-158 (472)
466 PRK14722 flhF flagellar biosyn 87.7 0.51 1.1E-05 49.8 3.7 45 31-75 133-179 (374)
467 PRK10789 putative multidrug tr 87.6 2.8 6.2E-05 46.7 9.8 29 33-61 339-367 (569)
468 TIGR03771 anch_rpt_ABC anchore 87.6 8.8 0.00019 37.1 12.1 28 35-62 6-33 (223)
469 cd03218 ABC_YhbG The ABC trans 87.6 8.1 0.00018 37.4 11.9 29 33-61 24-52 (232)
470 PTZ00361 26 proteosome regulat 87.5 15 0.00033 39.7 14.9 29 33-61 215-243 (438)
471 PRK09841 cryptic autophosphory 87.5 3.8 8.1E-05 47.3 10.9 43 33-75 530-572 (726)
472 PHA02575 1 deoxynucleoside mon 87.5 0.33 7.2E-06 47.5 2.0 22 36-57 1-22 (227)
473 TIGR02397 dnaX_nterm DNA polym 87.5 5.5 0.00012 41.1 11.3 28 33-60 34-61 (355)
474 PRK09518 bifunctional cytidyla 87.5 0.32 7E-06 55.7 2.2 28 37-64 3-30 (712)
475 cd03262 ABC_HisP_GlnQ_permease 87.5 8.7 0.00019 36.6 11.9 29 33-61 24-52 (213)
476 cd03267 ABC_NatA_like Similar 87.4 6.5 0.00014 38.4 11.2 29 33-61 45-73 (236)
477 PRK10575 iron-hydroxamate tran 87.4 5.2 0.00011 39.9 10.7 29 33-61 35-63 (265)
478 PRK06851 hypothetical protein; 87.4 0.54 1.2E-05 49.5 3.6 41 32-72 211-251 (367)
479 cd03260 ABC_PstB_phosphate_tra 87.4 9.5 0.00021 36.8 12.2 27 33-59 24-50 (227)
480 PF13245 AAA_19: Part of AAA d 87.4 0.44 9.5E-06 38.5 2.3 24 36-59 11-34 (76)
481 PF08477 Miro: Miro-like prote 87.4 0.37 8.1E-06 41.2 2.1 22 37-58 1-22 (119)
482 COG2326 Uncharacterized conser 87.4 12 0.00026 37.3 12.6 151 29-265 68-244 (270)
483 KOG0733|consensus 87.3 2.1 4.5E-05 47.6 8.0 27 34-60 222-248 (802)
484 PRK15455 PrkA family serine pr 87.3 0.43 9.4E-06 52.9 2.9 31 32-62 100-130 (644)
485 TIGR03878 thermo_KaiC_2 KaiC d 87.3 7.5 0.00016 38.8 11.7 26 34-59 35-60 (259)
486 TIGR00968 3a0106s01 sulfate AB 87.3 5.6 0.00012 38.9 10.6 30 33-62 24-53 (237)
487 cd03229 ABC_Class3 This class 87.3 3.2 6.9E-05 38.7 8.5 28 33-60 24-51 (178)
488 PRK15093 antimicrobial peptide 87.2 6.6 0.00014 40.7 11.6 28 33-60 31-58 (330)
489 PF13401 AAA_22: AAA domain; P 87.2 0.35 7.7E-06 42.1 1.8 28 34-61 3-30 (131)
490 PRK13538 cytochrome c biogenes 87.2 5.5 0.00012 37.9 10.3 29 33-61 25-53 (204)
491 cd03294 ABC_Pro_Gly_Bertaine T 87.1 5.8 0.00013 39.7 10.8 29 33-61 48-76 (269)
492 PRK10851 sulfate/thiosulfate t 87.1 6.1 0.00013 41.4 11.3 29 33-61 26-54 (353)
493 KOG2170|consensus 87.0 2.2 4.7E-05 43.6 7.4 36 32-67 107-142 (344)
494 cd04136 Rap_like Rap-like subf 87.0 0.42 9E-06 43.0 2.3 22 36-57 2-23 (163)
495 cd03110 Fer4_NifH_child This p 87.0 5 0.00011 37.2 9.7 35 37-75 2-36 (179)
496 TIGR02655 circ_KaiC circadian 86.9 5.7 0.00012 43.5 11.5 40 33-72 261-300 (484)
497 cd03247 ABCC_cytochrome_bd The 86.9 3.2 6.9E-05 38.7 8.3 29 33-61 26-54 (178)
498 PRK09493 glnQ glutamine ABC tr 86.9 7.8 0.00017 37.8 11.4 29 33-61 25-53 (240)
499 cd04138 H_N_K_Ras_like H-Ras/N 86.8 0.41 8.8E-06 42.8 2.1 22 36-57 2-23 (162)
500 PRK04328 hypothetical protein; 86.8 3.5 7.6E-05 40.9 8.9 37 34-71 22-59 (249)
No 1
>KOG0234|consensus
Probab=100.00 E-value=2.2e-84 Score=665.22 Aligned_cols=410 Identities=44% Similarity=0.764 Sum_probs=381.6
Q ss_pred CCCCccccccccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHH
Q psy673 19 PAREFSKMAFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALS 98 (512)
Q Consensus 19 par~~~~~~~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~ 98 (512)
|+..+++-+ -...+.|++|+||||||||||+++.+|.|||+|+|++|+.||+|++||......
T Consensus 13 ~~~~~~~~~-~~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~---------------- 75 (438)
T KOG0234|consen 13 PGLKYSTRS-NLFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKV---------------- 75 (438)
T ss_pred CCcceeccc-ccccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccc----------------
Confidence 555555544 125789999999999999999999999999999999999999999999877621
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCcEEEE
Q psy673 99 IRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGQVAFF 177 (512)
Q Consensus 99 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l-~~~g~~~i~ 177 (512)
..+.||.|.|..+.+.|.+++..++.|+..|| +.+|+++|+
T Consensus 76 --------------------------------------~s~~ff~p~n~~~~~lr~~~a~~~l~D~~~~l~~~~g~vai~ 117 (438)
T KOG0234|consen 76 --------------------------------------DSEPFFLPDNAEASKLRKQLALLALNDLLHFLIKENGQVAIF 117 (438)
T ss_pred --------------------------------------ccccccccCChhhhhhhHHHHHHHhhhHHHHhhccCCceEEe
Confidence 12447788888888888888888899999888 788999999
Q ss_pred cCCChhHHHHHHHHHHHHh-hcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 178 DATNSTQARRNTIHHKIVE-ERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 178 Datn~~~~~R~~~~~~~~~-~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
||||+|+++|++|++ +++ +.+++|+|||+.|+|++++.+||+.++..+|||.+.+.+.|.+||++||+.|++.||||+
T Consensus 118 Datnttr~rrk~i~~-~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl~ri~~ye~~YePld 196 (438)
T KOG0234|consen 118 DATNTTRERRKRIID-FAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFLKRIRNYEKYYEPLD 196 (438)
T ss_pred cCCCCCHHHHHHHHH-HHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHHHHHHhhhhccCcCC
Confidence 999999999999999 896 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ---cCCcceEEEEecCceeEeccCCCccccchhhhccccCcCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhh
Q psy673 257 ---EDHLSYMQIYNVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLS 333 (512)
Q Consensus 257 ---~~e~~yik~~n~g~~~~~~~~~g~l~s~i~~fLmn~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~ 333 (512)
+++++|||++|+|++++++++.||++|+|||||||+|..+++|||+|||||++|..++.+||++|++.|.++|+.++
T Consensus 197 ~~~d~~lsyik~in~g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~griggds~ls~~g~~ya~~l~ 276 (438)
T KOG0234|consen 197 RARDKDLSYIKIINVGEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGRIGGDSPLSERGSQYAKSLI 276 (438)
T ss_pred hhhccccceEEEecccceEEEecccceehhhhhhhhhccccCCceEEEEecCCCccccccccCCcccccHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcEEEeCcHHHHHHHHhHcccCc--ccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCC
Q psy673 334 DFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSH--KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGE 411 (512)
Q Consensus 334 ~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~--~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gE 411 (512)
+++.++......||||++.||+|||+.+..+. ..|..|+|++.|.|+|+|++++...||+++..+..|+++||||+||
T Consensus 277 ~f~~~~~~~dl~vwts~~~rti~ta~~l~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gE 356 (438)
T KOG0234|consen 277 KFVEEQSSSDLDVWTSQRKRTIQTAEGLKLDYSVEQWKALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGE 356 (438)
T ss_pred HHHhhhcccCceeccchHHHHhhhHhhcCcchhhhhHhhcCcccccccccccHHHHHHhCchhhhhccCCcceeecCCCC
Confidence 99998887778999999999999999776655 7899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe--CCEEEEEe-ccCC
Q psy673 412 CYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR--NMTLELIF-PHHS 485 (512)
Q Consensus 412 S~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~--~~~~~~i~-~~~~ 485 (512)
||.|+.+|++|+|.+|+++.+ |+|+||..+|+||++||++.+++..+. .+|.++|++|+|. ++.|+.+. +..+
T Consensus 357 Sy~D~v~RlePvImElEr~~~-Vlvi~Hqavircll~Yf~~~~~~e~p~l~~plhtv~~l~~~~y~~~~e~~~~~~~a 433 (438)
T KOG0234|consen 357 SYSDLVQRLEPVIMELERQEN-VLVITHQAVIRCLLAYFLNCSPVELPYLTVPLHTVIKLTPDAYGTTVESIRLNDTA 433 (438)
T ss_pred CHHHHHHhhhhHhHhhhhccc-EEEEecHHHHHHHHHHHhcCCHhhcccccccceeEEEEeeccccceeEEeeccccc
Confidence 999999999999999999865 999999999999999999999999999 9999999999998 89999988 4444
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=8.4e-72 Score=621.96 Aligned_cols=377 Identities=29% Similarity=0.511 Sum_probs=340.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+++|+|||||||||||+|++|++||+|.|+++++|+.+.+||.+.+ .
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~-~------------------------------- 261 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLER-R------------------------------- 261 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhcc-C-------------------------------
Confidence 46899999999999999999999999999999999999999988763 1
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
...++++.|.+ ....+++..+++++.+|+.+.|.++|+||||.|..+|+.+++
T Consensus 262 ------------------------~~~~~~~~~~~--~~e~~~~~~~~~d~~~~v~~~GgvaI~DatN~t~~rR~~~~~- 314 (664)
T PTZ00322 262 ------------------------GGAVSSPTGAA--EVEFRIAKAIAHDMTTFICKTDGVAVLDGTNTTHARRMALLR- 314 (664)
T ss_pred ------------------------CCCcCCCCCHH--HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHH-
Confidence 12256677766 334557788888999999777889999999999999999999
Q ss_pred HHhhcCc----eEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc---cCCcceEEEE
Q psy673 194 IVEERQY----MLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT---EDHLSYMQIY 266 (512)
Q Consensus 194 ~~~~~~~----~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~---~~e~~yik~~ 266 (512)
.+++.+. +|+|||++|+|++.+++|+.+.+..+|| +++++..+|++|++.|+..|||++ +++++|||++
T Consensus 315 ~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~----~~e~~~~~~~~~~~~~~~~Ye~~~~~~d~~~~~ik~~ 390 (664)
T PTZ00322 315 AIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG----APEDFVDRYYEVIEQLEAVYKSLNPVTDCDLTYIRIE 390 (664)
T ss_pred HHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHhhcccCCccccCCCceEEEe
Confidence 6887764 8999999999999999999988887776 688999999999999999999987 4579999975
Q ss_pred ecCceeEeccCCCccccchhhhccccCcCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhc-CCCCcE
Q psy673 267 NVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEK-NLSDLR 345 (512)
Q Consensus 267 n~g~~~~~~~~~g~l~s~i~~fLmn~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~-~~~~~~ 345 (512)
| |++|.+|+++|||++||+|||||+|+.+|+||||||||+.+|..++++||+|||+.|++||+.++++|... ..+++.
T Consensus 391 ~-g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~Gd~pLt~~G~~qA~~l~~~l~~~~~~~~~~ 469 (664)
T PTZ00322 391 D-TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIGGNSRLTERGRAYSRALFEYFQKEISTTSFT 469 (664)
T ss_pred c-CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccCCCCccCHHHHHHHHHHHHHHHhccCCCCcE
Confidence 5 99999999999999999999999999999999999999999999999999999999999999999999865 344569
Q ss_pred EEeCcHHHHHHHHhHccc---------------------CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCC
Q psy673 346 IWTSSKEAAKQTVAQCPG---------------------SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFY 404 (512)
Q Consensus 346 V~tSpl~RaiqTA~~i~~---------------------~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~ 404 (512)
|||||++||+|||+.+.. ++..++.|+|+++|.|||++++++.+.||+.|..|..|++.
T Consensus 470 V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~ 549 (664)
T PTZ00322 470 VMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYY 549 (664)
T ss_pred EEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhCCCc
Confidence 999999999999988853 35678999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHH-HHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhCC-----Cchhhcc-cCCCceEEEEEEeC
Q psy673 405 NRWPQGECYKDVL-TRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEE-----PPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 405 ~~~p~gES~~d~~-~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g~-----~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
+++|+|||+.|+. .|+++++.++.+..++|||||||++|+++++|++|. +++..+. .+|++++++|++.+
T Consensus 550 ~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 626 (664)
T PTZ00322 550 TAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIKIRMVG 626 (664)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHhcCCccccCcccCceeeccCCcEEEEEEec
Confidence 9999999999976 799999999987778999999999999999999995 6777778 99999999999874
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=5.4e-63 Score=477.88 Aligned_cols=211 Identities=52% Similarity=0.937 Sum_probs=172.0
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
+...|++|+|||||||||||||++|+|||+|+|++|++||+|++||++.+ .
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~-~---------------------------- 58 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSG-A---------------------------- 58 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS-S----------------------------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccc-c----------------------------
Confidence 56789999999999999999999999999999999999999999999887 2
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCcEEEEcCCChhHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l-~~~g~~~i~Datn~~~~~R~~ 189 (512)
..+++||||.|+++.+.|+++|..+++||.+|| +++|+|||+||||+|++||+.
T Consensus 59 -------------------------~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~ 113 (222)
T PF01591_consen 59 -------------------------PQDAEFFDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKM 113 (222)
T ss_dssp --------------------------S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHH
T ss_pred -------------------------ccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHH
Confidence 445679999999999999999999999999999 599999999999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc---cCCcceEEEE
Q psy673 190 IHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT---EDHLSYMQIY 266 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~---~~e~~yik~~ 266 (512)
|++ .+++.+++++||||+|+|++++++||++.+..+|||.++++++|++||++||++|+++|||++ +++++|||++
T Consensus 114 l~~-~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKii 192 (222)
T PF01591_consen 114 LVE-RFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKII 192 (222)
T ss_dssp HHH-HHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEE
T ss_pred HHH-HHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHhhcccccccccccccCceEEEEE
Confidence 999 799999999999999999999999999988888999999999999999999999999999999 6789999999
Q ss_pred ecCceeEeccCCCccccchhhhccccCcCC
Q psy673 267 NVGKRIVVHNETGPVQKRIVRFLMHLNITP 296 (512)
Q Consensus 267 n~g~~~~~~~~~g~l~s~i~~fLmn~~~~~ 296 (512)
|+|+++++|+++|||+|||||||||+|++|
T Consensus 193 n~g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 193 NVGEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp TTTTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred cCCceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999875
No 4
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=4.8e-35 Score=286.66 Aligned_cols=179 Identities=21% Similarity=0.177 Sum_probs=158.0
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++|||||||||.+|..++++| |.|||+.|++||+.+++.|+..+.+++.|||||+.||+|||+.+.. ++.
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~~~ 80 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESDQLWIPET 80 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCcCCCCcc
Confidence 4789999999999999999999 9999999999999999999875556679999999999999999842 466
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHH-HHHHhcC------------------------CCCCCCCCCCCHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD------------------------KFYNRWPQGECYKDVLTRLE 421 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d------------------------~~~~~~p~gES~~d~~~Rv~ 421 (512)
.++.|+|+++|.|||++++++.+.+|+. +..|..+ ...+.+|+|||+.++.+|+.
T Consensus 81 ~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv~ 160 (228)
T PRK14116 81 KTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVI 160 (228)
T ss_pred cCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999986 5555543 11346899999999999999
Q ss_pred HHHHHhH-h---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 422 LIILKIE-H---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 422 ~~i~el~-~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
+++.++. . .+++|||||||++|++++++++|.+.+.++. .+++|+++.++++.
T Consensus 161 ~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T PRK14116 161 PFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDE 218 (228)
T ss_pred HHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECC
Confidence 9999863 1 3689999999999999999999999999998 99999999998873
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=9.1e-35 Score=279.85 Aligned_cols=182 Identities=24% Similarity=0.247 Sum_probs=164.6
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Cccccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYK 369 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~ 369 (512)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|....+ +.|||||+.||+|||+.+.. ++.+++
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~~~~~--~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 79 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKDLSI--HAIYSSPSERTLHTAELIKGERDIPIIADE 79 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhcCCCC--CEEEECCcHHHHHHHHHHHhcCCCCceECc
Confidence 4789999999999999999988 999999999999999999987554 59999999999999999865 678899
Q ss_pred ccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHH
Q psy673 370 ALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLL 447 (512)
Q Consensus 370 ~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll 447 (512)
.|+|+++|.|+|++..++.+.||+.+..|..++..+.+|+|||+.++..|+..++.++.. .+++|||||||++|++++
T Consensus 80 ~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~~ 159 (203)
T PRK13463 80 HFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLV 159 (203)
T ss_pred CceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999843 357899999999999999
Q ss_pred HHhhCCCchhhcc--cCCCceEEEEEEeCCEEEE
Q psy673 448 GYFQEEPPDRFAY--KVRKKTHFLLSSRNMTLEL 479 (512)
Q Consensus 448 ~~l~g~~~~~~~~--~ip~~sv~~l~~~~~~~~~ 479 (512)
++++|.+.+..+. .++++++..+++.+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 193 (203)
T PRK13463 160 GHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEV 193 (203)
T ss_pred HHHhCCCHHHHhhccCccCceEEEEEEeCCcEEE
Confidence 9999999998876 3688998888887544443
No 6
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=1.9e-34 Score=276.62 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=163.9
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccccccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYKA 370 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~~ 370 (512)
|+||||||||+.+|..++++| |+|||+.|++||+.+++.|....+ +.|||||+.||+|||+.+.. ++.+++.
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~~~~~--~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 78 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLRDVPF--DLVLCSELERAQHTARLVLSDRQLPVHIIPE 78 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHhCCCC--CEEEECchHHHHHHHHHHHhcCCCCceeChh
Confidence 579999999999999999888 999999999999999999986554 49999999999999999965 6788999
Q ss_pred cccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHHH
Q psy673 371 LDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLLG 448 (512)
Q Consensus 371 L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll~ 448 (512)
|+|+++|.|+|++..++...+|+.|..|..++..+.+|+|||+.|+..|+..+++++.+ .+++|||||||++|+++++
T Consensus 79 L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l~~ 158 (199)
T PRK15004 79 LNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLIA 158 (199)
T ss_pred heeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHHHH
Confidence 99999999999999999999999999999888888889999999999999999999965 3578999999999999999
Q ss_pred HhhCCCchhhcc-cCCCceEEEEEEeCCEE
Q psy673 449 YFQEEPPDRFAY-KVRKKTHFLLSSRNMTL 477 (512)
Q Consensus 449 ~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~ 477 (512)
+++|.+.+..+. .+++|++..++.++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (199)
T PRK15004 159 RLLGMPAEAMWHFRVEQGCWSAIDINQGFA 188 (199)
T ss_pred HHhCCCHHHHhccccCCceEEEEEecCCcE
Confidence 999999998888 99999999998875433
No 7
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.8e-34 Score=282.68 Aligned_cols=180 Identities=18% Similarity=0.178 Sum_probs=157.8
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++|||||||||.+|..++++| |.|||+.|++||+.++++|...+.+++.|||||++||+|||+.+.. ++.
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~~~ 80 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVY 80 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCccHHHHHHHHHHHHhcccCCCCee
Confidence 4689999999999999999998 9999999999999999999876556779999999999999999853 567
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCC------------------------CCCCCCCCCHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKDVLTRLE 421 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~~~p~gES~~d~~~Rv~ 421 (512)
.+++|+|+++|.|||++.+++.+++|+. +..|..+.. ...+|+|||+.++..|+.
T Consensus 81 ~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~ 160 (228)
T PRK14119 81 KSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVI 160 (228)
T ss_pred ECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999986 445554321 123689999999999999
Q ss_pred HHHHHhH-h---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 422 LIILKIE-H---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 422 ~~i~el~-~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
+++.++. . .+++|||||||++|++++++++|.+.+..+. .+++|++..++.+..
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK14119 161 PFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDD 219 (228)
T ss_pred HHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCC
Confidence 9999973 2 3578999999999999999999999999888 999999999988744
No 8
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=2e-34 Score=282.12 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=164.7
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----------
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG---------- 363 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~---------- 363 (512)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|.... ++.|||||+.||+|||+.+..
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~~~~--~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~ 78 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKDLP--IDCIFTSTLVRSLMTALLAMTNHSSGKIPYI 78 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhhcCC--CCEEEEcCcHHHHHHHHHHHHhhcccccccc
Confidence 4789999999999999999998 99999999999999999998754 559999999999999998751
Q ss_pred -----------------------CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Q psy673 364 -----------------------SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRL 420 (512)
Q Consensus 364 -----------------------~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv 420 (512)
++...+.|+|+++|.|+|++++++.+++|+.+..++.+++.+++|+|||+.|+..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~Rv 158 (228)
T PRK01112 79 VHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRT 158 (228)
T ss_pred cccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHHHH
Confidence 355678999999999999999999999998887777778888999999999999999
Q ss_pred HHHHHHh-Hh---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCCEEEEE
Q psy673 421 ELIILKI-EH---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNMTLELI 480 (512)
Q Consensus 421 ~~~i~el-~~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~~~i 480 (512)
.+++.++ .+ .+++|+|||||++|+++++++++.+.+..+. .+++|++..++.++..++..
T Consensus 159 ~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK01112 159 LPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKH 223 (228)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcccc
Confidence 9999975 22 4579999999999999999999999999999 99999999999987776654
No 9
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=5.4e-34 Score=279.60 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=157.6
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++|||||||||.+|..++++| |.|||+.|++||+.+++.|.....+++.|||||++||+|||+++.. ++.
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~ 80 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASDQLWVPVE 80 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHcCCCCCEEEECCcHHHHHHHHHHHHhcccCCCCce
Confidence 4789999999999999999999 9999999999999999999865556679999999999999998741 567
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHH-HHHHhcC------------------------CCCCCCCCCCCHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD------------------------KFYNRWPQGECYKDVLTRLE 421 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d------------------------~~~~~~p~gES~~d~~~Rv~ 421 (512)
+++.|+|+++|.|||++++++.+++|+. +..|..+ ...+++|+|||+.++.+|+.
T Consensus 81 ~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~ 160 (230)
T PRK14117 81 KSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERAL 160 (230)
T ss_pred eCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999987 4445432 12346789999999999999
Q ss_pred HHHHHhH--h--CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 422 LIILKIE--H--SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 422 ~~i~el~--~--~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
+++.++. . .+++|||||||++|++++++++|.+.+..+. .++++++..|+.++.
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~ 219 (230)
T PRK14117 161 PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEK 219 (230)
T ss_pred HHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCC
Confidence 9999973 2 2478999999999999999999999999888 999999999988744
No 10
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=8.8e-34 Score=277.59 Aligned_cols=179 Identities=18% Similarity=0.108 Sum_probs=156.1
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHKE 367 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~~ 367 (512)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|.+...+++.|||||+.||+|||+.+.. ++..
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~~ 80 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVK 80 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCeec
Confidence 579999999999999999998 9999999999999999999875555679999999999999999953 4567
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCC------------------------CCCCCCCCCHHHHHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKDVLTRLEL 422 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~~~p~gES~~d~~~Rv~~ 422 (512)
++.|+|+++|.|||++.+++.+.+|+. +..|..+.. ...+|+|||+.++.+|+.+
T Consensus 81 ~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~ 160 (227)
T PRK14118 81 NWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLP 160 (227)
T ss_pred CCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHHHH
Confidence 889999999999999999999999976 444543211 2457899999999999999
Q ss_pred HHHHhHh----CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 423 IILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 423 ~i~el~~----~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
++.++.. .+++|||||||++|++++++++|.+.+..+. .+++|+++.++.++.
T Consensus 161 ~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 161 FWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 9998642 3578999999999999999999999999888 999999999988743
No 11
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1e-33 Score=273.12 Aligned_cols=179 Identities=20% Similarity=0.213 Sum_probs=157.3
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
++++||||||||+.+|..++++| |.|||+.|++||+.+++.|.+...+++.|||||+.||+|||+.+.. ++
T Consensus 1 ~~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 80 (206)
T PRK01295 1 MSRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLET 80 (206)
T ss_pred CCceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCCe
Confidence 35789999999999999999988 9999999999999999999876666779999999999999999854 46
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHH-HHhHh---CCCeEEEEeChH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELII-LKIEH---SKSNLLIVSHPA 441 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i-~el~~---~~~~vlIVsH~~ 441 (512)
.+++.|+|+++|.|+|++.+++.+.+|+.+..++.+++.+++|+|||+.|+..|+.+++ ..+.. .+++|||||||+
T Consensus 81 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~ 160 (206)
T PRK01295 81 IRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGN 160 (206)
T ss_pred EECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChH
Confidence 67899999999999999999999999987766566666789999999999999999974 55632 457999999999
Q ss_pred HHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 442 VLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 442 vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
+|+++++++++.+.+.++. .+.+++.+.+..+
T Consensus 161 ~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (206)
T PRK01295 161 SLRALVMVLDGLTPEQILKLELATGVPIVYRLN 193 (206)
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEec
Confidence 9999999999999999888 8888866555544
No 12
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-33 Score=278.74 Aligned_cols=180 Identities=22% Similarity=0.236 Sum_probs=158.6
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
+|++||||||||+.+|..++++| |.|||+.|++||+.+++.|...+..+..|||||+.||+|||+.+.. ++
T Consensus 3 ~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~~~i 82 (249)
T PRK14120 3 MTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAADRLWIPV 82 (249)
T ss_pred CCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEecChHHHHHHHHHHHHhcccCCCCe
Confidence 56899999999999999999988 9999999999999999999876555679999999999999999842 56
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCCCC----------------------CCCCCCCHHHHHHHHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKFYN----------------------RWPQGECYKDVLTRLEL 422 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~----------------------~~p~gES~~d~~~Rv~~ 422 (512)
..++.|+|+++|.|||++.+++.+++|+. +..|..+.... .+|+|||+.++..|+..
T Consensus 83 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv~~ 162 (249)
T PRK14120 83 RRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLP 162 (249)
T ss_pred EECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHHHHH
Confidence 78899999999999999999999999974 76676543221 14899999999999999
Q ss_pred HHHHh--H--hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 423 IILKI--E--HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 423 ~i~el--~--~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
++.++ . ..+++|||||||++|++++++++|++.+..+. .+++|+++.|+.++
T Consensus 163 ~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (249)
T PRK14120 163 YWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDE 219 (249)
T ss_pred HHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECC
Confidence 99984 2 24578999999999999999999999999999 99999999999873
No 13
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=4.4e-33 Score=268.09 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=157.4
Q ss_pred CcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCc-cccc
Q psy673 293 NITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSH-KEYK 369 (512)
Q Consensus 293 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~-~~~~ 369 (512)
...+++||||||||+++|..++++| |.|||+.|++||+.+++.|....++...|||||+.||+|||+.+..+. ..++
T Consensus 2 ~~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 81 (203)
T PRK13462 2 GVRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKLAGLTVDEVSG 81 (203)
T ss_pred CccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECchHHHHHHHHHhcCcccccCc
Confidence 3567899999999999999999888 899999999999999999987766555799999999999999985544 6789
Q ss_pred ccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHH
Q psy673 370 ALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLL 447 (512)
Q Consensus 370 ~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll 447 (512)
.|+|+++|.|+|++..++.+.+|+ +..|. ..+|+|||+.++..|+..++.++.. .+++|||||||++|++++
T Consensus 82 ~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ll 155 (203)
T PRK13462 82 LLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAVI 155 (203)
T ss_pred cccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHH
Confidence 999999999999999999999987 33332 3458999999999999999999854 357899999999999999
Q ss_pred HHhhCCCchhhcc-cCCCceEEEEEEeCCEEE
Q psy673 448 GYFQEEPPDRFAY-KVRKKTHFLLSSRNMTLE 478 (512)
Q Consensus 448 ~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~~ 478 (512)
++++|.+++..+. .++++++..+++.+....
T Consensus 156 ~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~ 187 (203)
T PRK13462 156 TRWVELPLAEGSRFAMPTASIAICGFEHGVRQ 187 (203)
T ss_pred HHHhCCCHHHhhhcccCCceEEEEEeeCCceE
Confidence 9999999988888 999999999988754333
No 14
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=4e-33 Score=268.79 Aligned_cols=182 Identities=26% Similarity=0.321 Sum_probs=168.2
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccccc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEY 368 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~ 368 (512)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|.....+++.|||||+.||+|||+++.. ++..+
T Consensus 1 ~~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~~ 80 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELGLPLEVD 80 (208)
T ss_pred CceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCEEEECchHHHHHHHHHHHHhcCCCceec
Confidence 36899999999999999999988 9999999999999999999976666779999999999999999986 56789
Q ss_pred cccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC--CCeEEEEeChHHHHHH
Q psy673 369 KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS--KSNLLIVSHPAVLRCL 446 (512)
Q Consensus 369 ~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~--~~~vlIVsH~~vir~l 446 (512)
+.|+|+++|.|||++..++.+.+|..+..|..+++.+.+|+|||+.++..|+.+++.++.+. +++|+|||||++|++|
T Consensus 81 ~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~l 160 (208)
T COG0406 81 DRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRAL 160 (208)
T ss_pred CCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999764 2369999999999999
Q ss_pred HHHhhCCCchhhcc-cCCCceEEEEEEeCCE
Q psy673 447 LGYFQEEPPDRFAY-KVRKKTHFLLSSRNMT 476 (512)
Q Consensus 447 l~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~ 476 (512)
+++++|.+....+. .++++++..+++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 161 LAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHhcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 99999999886666 9999999999998554
No 15
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=6.5e-33 Score=260.39 Aligned_cols=168 Identities=23% Similarity=0.288 Sum_probs=153.2
Q ss_pred EEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccccccccc
Q psy673 299 VYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYKALD 372 (512)
Q Consensus 299 I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~~L~ 372 (512)
||||||||+.+|..+++ | |+|||+.|++||+.+++.|.... ++.|||||+.||+|||+.+.. ++.+++.|+
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~L~ 77 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLADVP--FDAVYSSPLSRCRELAEILAERRGLPIIKDPRLR 77 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhcCCC--CCEEEECchHHHHHHHHHHHhhcCCCceECCccc
Confidence 68999999999998887 5 99999999999999999997544 459999999999999999975 678899999
Q ss_pred cccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHHHHh
Q psy673 373 DIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLLGYF 450 (512)
Q Consensus 373 E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll~~l 450 (512)
|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++..|+..++.++.+ .+++|||||||++|+++++++
T Consensus 78 E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~~~ 156 (177)
T TIGR03162 78 EMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHL 156 (177)
T ss_pred cccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 99999999999999999999 677888888888999999999999999999999964 357899999999999999999
Q ss_pred hCCCchhhcc-cCCCceEEEE
Q psy673 451 QEEPPDRFAY-KVRKKTHFLL 470 (512)
Q Consensus 451 ~g~~~~~~~~-~ip~~sv~~l 470 (512)
+|.+++..+. .+++++|..|
T Consensus 157 ~~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 157 LGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred hCCCHHHHhccccCCeeEEeC
Confidence 9999998888 8889888754
No 16
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=1.7e-32 Score=263.95 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=158.0
Q ss_pred EEEEecccccccccccccCC---CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccccccc
Q psy673 298 TVYLTRPGESINNVQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYKA 370 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~~ 370 (512)
+||||||||+.+|..++++| |.|||+.|++||+.++++|.... ++.|||||+.||+|||+.+.. ++.+++.
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 78 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLADLP--IAAIVSSPLERCRETAEPIAEARGLPPRVDER 78 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHhcCC--CCEEEeCcHHHHHHHHHHHHHhcCCCceECcc
Confidence 48999999999999998887 48999999999999999998644 559999999999999999865 7889999
Q ss_pred cccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh-------CCCeEEEEeChHHH
Q psy673 371 LDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-------SKSNLLIVSHPAVL 443 (512)
Q Consensus 371 L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~-------~~~~vlIVsH~~vi 443 (512)
|+|+++|.|+|++.+++.+. ..|..|..++..+.+|+|||+.++..|+.+++.++.. .+++|||||||++|
T Consensus 79 L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~i 156 (204)
T TIGR03848 79 LGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVI 156 (204)
T ss_pred cccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHH
Confidence 99999999999999998754 3566677788888899999999999999999998742 34689999999999
Q ss_pred HHHHHHhhCCCchhhcc-cCCCceEEEEEEeCCEEEEE
Q psy673 444 RCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNMTLELI 480 (512)
Q Consensus 444 r~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~~~i 480 (512)
++++++++|.+.+..+. .+++++++.|+..++.+...
T Consensus 157 r~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~ 194 (204)
T TIGR03848 157 KSVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVL 194 (204)
T ss_pred HHHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEE
Confidence 99999999999998888 99999999999886555443
No 17
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=100.00 E-value=1.7e-32 Score=271.12 Aligned_cols=178 Identities=21% Similarity=0.172 Sum_probs=155.2
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHKE 367 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~~ 367 (512)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|...+++++.|||||++||+|||+++.. ++..
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i~~ 80 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQLWIPVKK 80 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCeee
Confidence 579999999999999999988 9999999999999999999876666779999999999999999964 4566
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCC------------------CC------CCCCCCCHHHHHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------YN------RWPQGECYKDVLTRLEL 422 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------~~------~~p~gES~~d~~~Rv~~ 422 (512)
++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .| .+|+|||+.++..|+..
T Consensus 81 ~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv~~ 160 (245)
T TIGR01258 81 SWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLP 160 (245)
T ss_pred CcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHHHH
Confidence 889999999999999999999999976 444543211 12 37899999999999999
Q ss_pred HHHHhH-h---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 423 IILKIE-H---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 423 ~i~el~-~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
+++++. . .+++|||||||++|++++++++|++.+..+. .+++|+++.++.++
T Consensus 161 ~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (245)
T TIGR01258 161 YWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDE 217 (245)
T ss_pred HHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECC
Confidence 999973 2 4578999999999999999999999999888 99999999888763
No 18
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=3e-32 Score=264.45 Aligned_cols=177 Identities=20% Similarity=0.234 Sum_probs=153.4
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Cccccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYK 369 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~ 369 (512)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|....++ .|||||+.||+|||+.+.. ++.+++
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~~~~~~--~I~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 78 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGIT--HIISSDLGRTRRTAEIIAQACGCDIIFDP 78 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHhcCCCC--EEEECCcHHHHHHHHHHHHhcCCCeeECh
Confidence 4789999999999999888877 9999999999999999999876554 9999999999999999865 677899
Q ss_pred ccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHH
Q psy673 370 ALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLL 447 (512)
Q Consensus 370 ~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll 447 (512)
.|+|+++|.|+|++.+++...++.....+...+..+.+|+|||+.++..|+..++.++.. .+++|||||||++|++++
T Consensus 79 ~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~l~ 158 (215)
T PRK03482 79 RLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGCLV 158 (215)
T ss_pred hccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHH
Confidence 999999999999999988765443222233345567789999999999999999999854 346899999999999999
Q ss_pred HHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 448 GYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 448 ~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
++++|.+.+.... .++++++..|++.+
T Consensus 159 ~~l~~~~~~~~~~~~~~n~sis~~~~~~ 186 (215)
T PRK03482 159 STILGLPAWAERRLRLRNCSISRVDYQE 186 (215)
T ss_pred HHHhCCChhhhhccCCCCcEEEEEEEeC
Confidence 9999999988777 89999999998864
No 19
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.7e-32 Score=270.05 Aligned_cols=179 Identities=20% Similarity=0.189 Sum_probs=156.5
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHKE 367 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~~ 367 (512)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|...+++++.|||||++||+|||+.+.. ++..
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~~~ 80 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPVEK 80 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCceE
Confidence 579999999999999999988 9999999999999999999877666779999999999999999853 4567
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCC------------------------CCCCCCCCCHHHHHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKDVLTRLEL 422 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~~~p~gES~~d~~~Rv~~ 422 (512)
++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. ...+|+|||+.++..|+..
T Consensus 81 ~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~ 160 (247)
T PRK14115 81 SWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLP 160 (247)
T ss_pred CccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHHHH
Confidence 899999999999999999999999986 444543210 2347899999999999999
Q ss_pred HHHHhH----hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 423 IILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 423 ~i~el~----~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
+++++. ..+++|||||||++|+++++++++.+.+..+. .+++++++.|+.+..
T Consensus 161 ~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (247)
T PRK14115 161 YWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDEN 218 (247)
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCC
Confidence 998863 24578999999999999999999999998888 999999999998743
No 20
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.97 E-value=1.3e-30 Score=273.23 Aligned_cols=179 Identities=20% Similarity=0.207 Sum_probs=162.3
Q ss_pred CcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccc
Q psy673 293 NITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHK 366 (512)
Q Consensus 293 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~ 366 (512)
+.++++||||||||+.+|..++++| |.|||+.|++||+.+++.|.... +++.|||||+.||+|||+.+.. ++.
T Consensus 168 ~~~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~~-~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 246 (372)
T PRK07238 168 RGTPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRARDTAAAAAKALGLDVT 246 (372)
T ss_pred CCCceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhccC-CCCEEEECChHHHHHHHHHHHHhcCCCcE
Confidence 4567899999999999999988877 99999999999999999998762 3459999999999999999865 677
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLR 444 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir 444 (512)
+++.|+|+++|.|+|++.+++.+.+|+.+..|..++ .+.+|+|||+.++..|+..++.+|.. .+++|||||||++|+
T Consensus 247 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir 325 (372)
T PRK07238 247 VDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIK 325 (372)
T ss_pred ECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHH
Confidence 899999999999999999999999999999998887 57789999999999999999999964 357899999999999
Q ss_pred HHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 445 CLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 445 ~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
+++++++|.+.+.... .++++++..+++.
T Consensus 326 ~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~ 355 (372)
T PRK07238 326 TLLRLALDAGPGVLYRLHLDLASLSIAEFY 355 (372)
T ss_pred HHHHHHhCCCHHHhhhcccCCceEEEEEEE
Confidence 9999999999998888 8999998888875
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.96 E-value=4.1e-29 Score=228.38 Aligned_cols=149 Identities=28% Similarity=0.413 Sum_probs=135.3
Q ss_pred EEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Cccccccc
Q psy673 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYKAL 371 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~~L 371 (512)
+||||||||+.+|..++.++ |+|||+.|+.||+.+++.|.+....+..|||||+.||+|||+.+.. ++..++.|
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~~l 80 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAERDIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDPRL 80 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHTTSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEGGG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhcccccccccCceEEecCCcchhhhhhchhhccccccccccccc
Confidence 69999999999998888877 6689999999999999999966666779999999999999999876 68889999
Q ss_pred ccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhH---hCCCeEEEEeChHHHHHH
Q psy673 372 DDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIE---HSKSNLLIVSHPAVLRCL 446 (512)
Q Consensus 372 ~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~---~~~~~vlIVsH~~vir~l 446 (512)
+|+++|.|+|++..++.+.+|..+..|..++..+.+|++||+.++..|+..++.+|. ..+++|+|||||++|++|
T Consensus 81 ~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 81 REIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp SCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999997 457899999999999986
No 22
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.95 E-value=3.2e-28 Score=223.82 Aligned_cols=145 Identities=30% Similarity=0.316 Sum_probs=126.2
Q ss_pred EEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhc-CCCCcEEEeCcHHHHHHHHhHccc---Cccccccc
Q psy673 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEK-NLSDLRIWTSSKEAAKQTVAQCPG---SHKEYKAL 371 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~-~~~~~~V~tSpl~RaiqTA~~i~~---~~~~~~~L 371 (512)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|... ...+..|||||+.||+|||+.+.. .....+.|
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~L 80 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIALGLGEVDPRL 80 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCEEEeCchHHHHHHHHHHHHhcCCCCCChhh
Confidence 58999999999998777664 9999999999999999999865 345669999999999999999975 23478899
Q ss_pred ccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh----CCCeEEEEeChHHHHHH
Q psy673 372 DDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----SKSNLLIVSHPAVLRCL 446 (512)
Q Consensus 372 ~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~----~~~~vlIVsH~~vir~l 446 (512)
+|+++|.|+|++..++.+.+|+.+. +++.+.+|+|||+.++..|+..++.++.+ ..++|||||||++|+++
T Consensus 81 ~E~~~G~~~g~~~~~~~~~~~~~~~----~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 81 RERDYGAWEGLTKEEERAKAWTRPA----DWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred hhcccceecCCcHHHHHHHHHHHHh----ccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 9999999999999999888887654 33677889999999999999999999964 35789999999999864
No 23
>KOG0235|consensus
Probab=99.95 E-value=1.1e-27 Score=228.52 Aligned_cols=179 Identities=25% Similarity=0.233 Sum_probs=159.7
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
...+++|||||||+||.+++++| |.+||+.|.+||+.+++.|...+++++.+|||++.||.|||+.+.+ ++
T Consensus 4 ~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~~~~~~~pv 83 (214)
T KOG0235|consen 4 NTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEELKQKKVPV 83 (214)
T ss_pred cceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhcCCcccEEecCHHHHHHHHHHHHHHhhccCCcce
Confidence 35799999999999999999999 8899999999999999999999998889999999999999999976 67
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH--HHHHhcCC-CCCCCCCCCCHHHHHHHHHHHHHHhH----hCCCeEEEEe
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ--YIDTRADK-FYNRWPQGECYKDVLTRLELIILKIE----HSKSNLLIVS 438 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~--~~~~~~d~-~~~~~p~gES~~d~~~Rv~~~i~el~----~~~~~vlIVs 438 (512)
....+|+|+++|.++|+...|+.++++++ +..+.... ..-..|.+||..++..|+.+++++.. .++.+|+||+
T Consensus 84 ~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~a 163 (214)
T KOG0235|consen 84 LYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVA 163 (214)
T ss_pred EechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEc
Confidence 78899999999999999999999999987 44544433 34457789999999999999999863 3478999999
Q ss_pred ChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 439 HPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 439 H~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
||..+|.++.++.|.+.+.... ++|.+..+.++.+
T Consensus 164 HGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld 199 (214)
T KOG0235|consen 164 HGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELD 199 (214)
T ss_pred CcHHHHHHHHHHhcCCHhhhhheecccCCceEEEcc
Confidence 9999999999999999999888 9999877777665
No 24
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.95 E-value=3.9e-27 Score=231.97 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=143.4
Q ss_pred cccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------CcccccccccccCCcC
Q psy673 309 NNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHKEYKALDDIHAGIC 379 (512)
Q Consensus 309 ~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~~~~~L~E~~~G~~ 379 (512)
+|..++++| |+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++..++.|+|+++|.|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G~~ 80 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYGAL 80 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccccc
Confidence 466778888 9999999999999999999876667779999999999999999963 4567899999999999
Q ss_pred CCCCHHHHHHhchHHHHHHhcCCC-------------------------CCCCCCCCCHHHHHHHHHHHHHHhH----hC
Q psy673 380 EGQTYTEIYTNHCAQYIDTRADKF-------------------------YNRWPQGECYKDVLTRLELIILKIE----HS 430 (512)
Q Consensus 380 eg~t~~ei~~~~p~~~~~~~~d~~-------------------------~~~~p~gES~~d~~~Rv~~~i~el~----~~ 430 (512)
||++.+++.+.+|+.+..++.+.+ .+++|+|||+.++..|+.+++.++. ..
T Consensus 81 EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~ 160 (236)
T PTZ00123 81 QGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILA 160 (236)
T ss_pred cCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999987444333221 2345899999999999999999852 24
Q ss_pred CCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 431 KSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 431 ~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
+++|||||||++|+++++++++.+++..+. .++++++..+++.+.
T Consensus 161 ~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~ 206 (236)
T PTZ00123 161 GKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDEN 206 (236)
T ss_pred CCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCC
Confidence 578999999999999999999999999888 999999999988744
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.5e-27 Score=218.13 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=158.4
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++++|+|||||+||..+++.| |.+||++|..+|...|+.|++.++.++.+|||-+.||++|++++.. ++.
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~ 80 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVI 80 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchh
Confidence 5789999999999999999999 9999999999999999999999999999999999999999999876 566
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCC-------------------------CCCCHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWP-------------------------QGECYKDVLTRLE 421 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p-------------------------~gES~~d~~~Rv~ 421 (512)
...+|+|.++|.+.|++..+..++|.++....+...+...+| ..||..++..|+.
T Consensus 81 kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~ 160 (230)
T COG0588 81 KSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVL 160 (230)
T ss_pred hHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhh
Confidence 778999999999999999999999998765544444444444 3499999999999
Q ss_pred HHHHHh----HhCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 422 LIILKI----EHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 422 ~~i~el----~~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
|++.+. ..++++||||+||..+|+|+.|+.|++-+++.. ++|+|.-+.++.+
T Consensus 161 Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld 217 (230)
T COG0588 161 PYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELD 217 (230)
T ss_pred HHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEEC
Confidence 999886 246899999999999999999999999999999 9999976666665
No 26
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.88 E-value=7.3e-22 Score=180.59 Aligned_cols=133 Identities=27% Similarity=0.316 Sum_probs=113.7
Q ss_pred EEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-----Ccccccc
Q psy673 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-----SHKEYKA 370 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-----~~~~~~~ 370 (512)
+|||||||++.++......+ |.|||+.|++||+.++++|.....++..|||||+.||+|||+.+.. ++...+.
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~~~ 80 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVDPR 80 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeCcc
Confidence 58999999999987665444 9999999999999999999987666779999999999999999964 2333444
Q ss_pred cccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHHH
Q psy673 371 LDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLLG 448 (512)
Q Consensus 371 L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll~ 448 (512)
|+| .|+..++.++.+ .+++|+||||+++|+.+++
T Consensus 81 L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~~~ 116 (153)
T cd07067 81 LRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGGVLRALLA 116 (153)
T ss_pred chH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHH
Confidence 444 788999999865 3689999999999999999
Q ss_pred HhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 449 YFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 449 ~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
++++.+...++. .+++++++.+++.+
T Consensus 117 ~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 117 YLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred HHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 999999988877 99999999999874
No 27
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.87 E-value=2e-21 Score=197.26 Aligned_cols=160 Identities=21% Similarity=0.180 Sum_probs=121.4
Q ss_pred cEEEEecccccccccccccCCCC---CCCHHHHHHHHHhhhhhhhcC------CCCcEEEeCcHHHHHHHHhHccc----
Q psy673 297 RTVYLTRPGESINNVQAILGGDS---DLTAGGQEYSKCLSDFVSEKN------LSDLRIWTSSKEAAKQTVAQCPG---- 363 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~gD~---pLTe~G~~qA~~l~~~L~~~~------~~~~~V~tSpl~RaiqTA~~i~~---- 363 (512)
++||||||||+..+ + ..|. +||+.|++||+.++++|.+.. .+++.|||||+.||+|||+.+..
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 89999999996543 2 2344 499999999999999998741 14569999999999999999864
Q ss_pred -CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC-----CCeEEEE
Q psy673 364 -SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS-----KSNLLIV 437 (512)
Q Consensus 364 -~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~-----~~~vlIV 437 (512)
++..++.|+|. ++..+. | ....+.++++|+ .++..|+..++.++... ++.+|||
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 56778888882 222110 1 011234455555 67799999999998431 3568999
Q ss_pred eChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe-CCEEEEE
Q psy673 438 SHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR-NMTLELI 480 (512)
Q Consensus 438 sH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~-~~~~~~i 480 (512)
|||++|++++++++|.+.+.... .+++++|..++.. ++.+.+.
T Consensus 239 sHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~g~~~l~ 283 (299)
T PTZ00122 239 CHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVSLS 283 (299)
T ss_pred eCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCCCcEEEE
Confidence 99999999999999999998887 8999999999886 3444443
No 28
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.87 E-value=2.8e-22 Score=194.30 Aligned_cols=168 Identities=27% Similarity=0.385 Sum_probs=113.0
Q ss_pred cCCCCCeEEEEeCCCCCCccccc-----cccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 5 QRTVTPQVVAMVGLPAREFSKMA-----FYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 5 ~~~~~~~~~~~~glpar~~~~~~-----~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.....++|||||||||||||+++ |++|+|.++.||++|-+ .+... +. ..
T Consensus 7 ~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~y--------------RR~~~--------~~----~~ 60 (222)
T PF01591_consen 7 LFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDY--------------RRKLS--------GA----PQ 60 (222)
T ss_dssp ------EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH--------------HHHHH--------SS-----S
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccc--------------eeccc--------cc----cc
Confidence 34567999999999999999755 67899999999999943 33221 11 12
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHH
Q psy673 80 SISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII-KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIAL 158 (512)
Q Consensus 80 ~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~ 158 (512)
+ ++||+++|.++..+|+++|..+++||.+||. ++|+|| |||++|++ .++|+.+.
T Consensus 61 --~---~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VA------------------I~DATN~T-~~RR~~l~- 115 (222)
T PF01591_consen 61 --D---AEFFDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQVA------------------IFDATNST-RERRKMLV- 115 (222)
T ss_dssp ------GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEE------------------EEES---S-HHHHHHHH-
T ss_pred --c---cccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEE------------------EEeCCCCC-HHHHHHHH-
Confidence 2 6899999999999999999999999999995 899999 99999998 35555554
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCChhHH-HHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChh
Q psy673 159 QALEDLDDWIIKGGQVAFFDATNSTQA-RRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPD 235 (512)
Q Consensus 159 ~~l~~~~~~l~~~g~~~i~Datn~~~~-~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~ 235 (512)
+.+.+. +.+++++...+..++ -+..|.++...+.+|. ..+.++.+++..+|.+.+-+-|.+++.+
T Consensus 116 ~~~~~~------~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~------~~~~e~A~~Df~~RI~~Ye~~YEpl~~e 181 (222)
T PF01591_consen 116 ERFKEH------GIKVLFIESICDDPEIIERNIREKKQNSPDYK------GMDPEEAIEDFKKRIEHYEKVYEPLDEE 181 (222)
T ss_dssp HHHHHT------T-EEEEEEEE---HHHHHHHHHHHHTTSGGGT------TS-HHHHHHHHHHHHHHHHTT-----TT
T ss_pred HHHHHc------CCcEEEEEEEeCCHHHHHHHHHHHHcCCcccc------cCCHHHHHHHHHHHHHhhcccccccccc
Confidence 444442 468999999888887 4456777444447888 7888999999999999999999998833
No 29
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.79 E-value=9.2e-19 Score=159.12 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=109.5
Q ss_pred EEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCccccccccccc
Q psy673 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIH 375 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~ 375 (512)
.|||||||++.++..+.+++ |.|||+.|++||+.++++|.+...++..|||||+.||+|||+.+.........+..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~~-- 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV-- 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHHHHHHhcCCCCeEE--
Confidence 48999999999987765444 99999999999999999999875556799999999999999998642210000000
Q ss_pred CCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh----CCCeEEEEeChHHHHHHHHHhh
Q psy673 376 AGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQ 451 (512)
Q Consensus 376 ~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~----~~~~vlIVsH~~vir~ll~~l~ 451 (512)
.+. .|+.+++.++.+ ..++++||||+++|+.++++++
T Consensus 79 ---------------~~~------------------------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~ 119 (153)
T cd07040 79 ---------------DPR------------------------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALL 119 (153)
T ss_pred ---------------CHH------------------------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 000 788888888855 3689999999999999999999
Q ss_pred CCCchhhcc-cCCCceEEEEEEeCC
Q psy673 452 EEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 452 g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
+.+....+. .++++++..++...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 120 GLSDEEILSLNLPNGSILVLELDEC 144 (153)
T ss_pred CcCHHHhccccCCCCceEEEEEcCC
Confidence 999888777 899999999988754
No 30
>PRK06193 hypothetical protein; Provisional
Probab=99.76 E-value=8.3e-18 Score=161.25 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=115.1
Q ss_pred CCcEEEEecccccccccccccCC-------CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCccc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG-------DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKE 367 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g-------D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~ 367 (512)
....|||||||++++|..+.+.+ |.|||+.|++||+.++++|.+.++.++.|||||+.||+|||+.+......
T Consensus 41 ~~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~~~~~d~V~sSpl~Ra~qTA~il~~~~~~ 120 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHEK 120 (206)
T ss_pred cCCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhccccc
Confidence 45799999999999887766555 36999999999999999999877777899999999999999998642211
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLL 447 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll 447 (512)
...+++. ....|.+|++..+..|+..+|.++....++|+||+|+..++.+.
T Consensus 121 ~~~l~~~-----------------------------~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~l~ 171 (206)
T PRK06193 121 EIRLNFL-----------------------------NSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEAAT 171 (206)
T ss_pred Ccccccc-----------------------------cccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHHHh
Confidence 1111110 01122457888888999999999987778999999999999988
Q ss_pred HHhhCCCchhhcccCCCceEEEEEEe-CCEEEEEeccCCCCC
Q psy673 448 GYFQEEPPDRFAYKVRKKTHFLLSSR-NMTLELIFPHHSTGT 488 (512)
Q Consensus 448 ~~l~g~~~~~~~~~ip~~sv~~l~~~-~~~~~~i~~~~~~~~ 488 (512)
+++.+ +.|+.+.+.+. ++..+.+..+.+-+|
T Consensus 172 g~~~~----------~~g~~~~~~~~~~g~~~~~~~~~~~~~ 203 (206)
T PRK06193 172 GIYPE----------PEGEAAVFEPLGGEGFKLLGNLPPEDW 203 (206)
T ss_pred CCCCc----------cCccEEEEEeCCCCCceEeeecCHHHh
Confidence 86555 24555555654 444666665555444
No 31
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.72 E-value=1.2e-16 Score=147.12 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=100.3
Q ss_pred cEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCcccccccccccC
Q psy673 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHA 376 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~~ 376 (512)
|+|||||||+++++.. ...|.|||+.|++||+.++++|.+.+..++.|||||+.||+|||+.+....... ...
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~-----~~~ 73 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLNLP-----SSA 73 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHHcCCC-----cce
Confidence 5899999999998754 234889999999999999999998777777999999999999999986522110 011
Q ss_pred CcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh-CCCeEEEEeChHHHHHHHHHhhCCCc
Q psy673 377 GICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCLLGYFQEEPP 455 (512)
Q Consensus 377 G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~-~~~~vlIVsH~~vir~ll~~l~g~~~ 455 (512)
..++++ +|+ ++..+ +..++.++.. ..++++||+|+..+..++.++++.+.
T Consensus 74 ~~~~~l------------------------~p~-~~~~~----~~~~l~~~~~~~~~~vliVgH~P~i~~l~~~l~~~~~ 124 (152)
T TIGR00249 74 EVLEGL------------------------TPC-GDIGL----VSDYLEALTNEGVASVLLVSHLPLVGYLVAELCPGEN 124 (152)
T ss_pred EEccCc------------------------CCC-CCHHH----HHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhCCCC
Confidence 111111 122 33333 3334444433 35799999999999999999998532
Q ss_pred hhhcccCCCceEEEEEEe
Q psy673 456 DRFAYKVRKKTHFLLSSR 473 (512)
Q Consensus 456 ~~~~~~ip~~sv~~l~~~ 473 (512)
. ..+|.+++..|+.+
T Consensus 125 ~---~~~~~~~~~~l~~~ 139 (152)
T TIGR00249 125 P---IMFTTGAIASLLWD 139 (152)
T ss_pred C---CcCcceeEEEEEEe
Confidence 1 16789999999987
No 32
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.67 E-value=4.6e-16 Score=143.27 Aligned_cols=142 Identities=17% Similarity=0.188 Sum_probs=105.1
Q ss_pred CcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCccccccccccc
Q psy673 296 PRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIH 375 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~ 375 (512)
||+|||+|||++++...+.-+.|.|||+.|+++|+.+|++|++.+..++.|+|||..||+|||+.+....- |-.
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~------~~~ 74 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLG------EKK 74 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhC------ccc
Confidence 58999999999999876655669999999999999999999999998899999999999999999875221 111
Q ss_pred CCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhCCCc
Q psy673 376 AGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPP 455 (512)
Q Consensus 376 ~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g~~~ 455 (512)
...+++.+ |++.. .-+...++++.....+++||+|...+..+...+.+.
T Consensus 75 ~~~~~~l~------------------------p~~d~-----~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~~~-- 123 (163)
T COG2062 75 VEVFEELL------------------------PNGDP-----GTVLDYLEALGDGVGSVLLVGHNPLLEELALLLAGG-- 123 (163)
T ss_pred ceeccccC------------------------CCCCH-----HHHHHHHHHhcccCceEEEECCCccHHHHHHHHccc--
Confidence 11122222 11111 011223333333447899999999999999999985
Q ss_pred hhhcccCCCceEEEEEEeC
Q psy673 456 DRFAYKVRKKTHFLLSSRN 474 (512)
Q Consensus 456 ~~~~~~ip~~sv~~l~~~~ 474 (512)
...+..+|.++|..|++++
T Consensus 124 ~~~~~~fptsgia~l~~~~ 142 (163)
T COG2062 124 ARLPVKFPTSGIAVLEFDG 142 (163)
T ss_pred cccccCCCcccEEEEEecc
Confidence 2222288999999999883
No 33
>KOG4754|consensus
Probab=99.66 E-value=6.4e-16 Score=144.80 Aligned_cols=157 Identities=22% Similarity=0.221 Sum_probs=119.9
Q ss_pred CcEEEEecccccccccccccC---------CCCCCCHHHHHHHHHhhhhhhhcCCC--CcEEEeCcHHHHHHHHhHccc-
Q psy673 296 PRTVYLTRPGESINNVQAILG---------GDSDLTAGGQEYSKCLSDFVSEKNLS--DLRIWTSSKEAAKQTVAQCPG- 363 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~---------gD~pLTe~G~~qA~~l~~~L~~~~~~--~~~V~tSpl~RaiqTA~~i~~- 363 (512)
.++||||||||..+|..+.-. -|+-||+.|++|+..|+..+....+. +..|++|||+||+||+.....
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 689999999999999865321 19999999999999999988776655 779999999999999998754
Q ss_pred ----------Cccccccc----cc-ccCCcCC-CCCHHHHHHhchHHHHH-HhcC-CCCCCCCCCCCHHHHHHHHHHHHH
Q psy673 364 ----------SHKEYKAL----DD-IHAGICE-GQTYTEIYTNHCAQYID-TRAD-KFYNRWPQGECYKDVLTRLELIIL 425 (512)
Q Consensus 364 ----------~~~~~~~L----~E-~~~G~~e-g~t~~ei~~~~p~~~~~-~~~d-~~~~~~p~gES~~d~~~Rv~~~i~ 425 (512)
++.+.|.+ +| +.--.|+ +.+..+..+.||..-.. -..| .+.+.+--.|++.+...|-..++.
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 44555666 66 4444454 45678888888854222 2222 123333457999999999999999
Q ss_pred HhHh-CCCeEEEEeChHHHHHHHHHhhC
Q psy673 426 KIEH-SKSNLLIVSHPAVLRCLLGYFQE 452 (512)
Q Consensus 426 el~~-~~~~vlIVsH~~vir~ll~~l~g 452 (512)
++.. ..+.|.||+|++.|+.++..+..
T Consensus 174 ~l~~r~ek~iavvths~fl~~llk~i~k 201 (248)
T KOG4754|consen 174 WLAKRPEKEIAVVTHSGFLRSLLKKIQK 201 (248)
T ss_pred HHHhCccceEEEEEehHHHHHHHHHhcc
Confidence 9964 45679999999999999887755
No 34
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.65 E-value=2.1e-15 Score=139.80 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=95.0
Q ss_pred cEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCccccc---cccc
Q psy673 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYK---ALDD 373 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~---~L~E 373 (512)
|+|||||||++.++.. ...|.|||+.|++||+.++++|...+..++.|||||+.||+|||+.+........ ...+
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~~~~~~ 78 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEVVGECLNLPASAEVLPE 78 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCHHHHHHHHHHHHHHhCCCCceEEccC
Confidence 5799999999988742 2227799999999999999999987777789999999999999999864211000 0111
Q ss_pred ccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh-CCCeEEEEeChHHHHHHHHHhhC
Q psy673 374 IHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCLLGYFQE 452 (512)
Q Consensus 374 ~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~-~~~~vlIVsH~~vir~ll~~l~g 452 (512)
+ +|++ +.. .+..++..+.. ..++|+||+|...+..+..++++
T Consensus 79 l--------------------------------~~~~-~~~----~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~L~~ 121 (159)
T PRK10848 79 L--------------------------------TPCG-DVG----LVSAYLQALANEGVASVLVISHLPLVGYLVAELCP 121 (159)
T ss_pred C--------------------------------CCCC-CHH----HHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHHHhC
Confidence 1 1111 111 22333333322 24699999999999999999987
Q ss_pred CCchhhcccCCCceEEEEEEe
Q psy673 453 EPPDRFAYKVRKKTHFLLSSR 473 (512)
Q Consensus 453 ~~~~~~~~~ip~~sv~~l~~~ 473 (512)
..... .+|++++..++.+
T Consensus 122 ~~~~~---~~~t~~i~~l~~~ 139 (159)
T PRK10848 122 GETPP---MFTTSAIACVTLD 139 (159)
T ss_pred CCCCC---CcCCceEEEEEec
Confidence 43211 4789999999887
No 35
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.57 E-value=2.5e-14 Score=136.25 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=80.8
Q ss_pred cCCcEEEEecccccccccccccC-CCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc--Ccccccc
Q psy673 294 ITPRTVYLTRPGESINNVQAILG-GDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG--SHKEYKA 370 (512)
Q Consensus 294 ~~~~~I~LVRHGes~~n~~~~~~-gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~--~~~~~~~ 370 (512)
...++||||||||+.....+... ++.|||+.|++||+.++++|.+.... +.|||||+.||+|||+.+.. ++..++.
T Consensus 52 ~~~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~~~~-d~I~sSpa~Ra~qTAe~ia~~~~v~~~~~ 130 (201)
T PRK15416 52 KQHPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSADIPD-YDLYSSNTVRTIQSATWFSAGKKLTVDKR 130 (201)
T ss_pred cCCCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-CEEEECCCHHHHHHHHHHhcCCCcEecHH
Confidence 34568999999998322112111 13689999999999999999865443 59999999999999999864 3333333
Q ss_pred cccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHh
Q psy673 371 LDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYF 450 (512)
Q Consensus 371 L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l 450 (512)
|.|++.+ ....+..++.+. .+++||||+|...+..|....
T Consensus 131 Lye~~~~--------------------------------------~~~~i~~~i~~~--~~~tVLIVGHnp~i~~La~~~ 170 (201)
T PRK15416 131 LSDCGNG--------------------------------------IYSAIKDLQRKS--PDKNIVIFTHNHCLTYIAKDK 170 (201)
T ss_pred HhhcCch--------------------------------------hHHHHHHHHHhC--CCCEEEEEeCchhHHHHHHHh
Confidence 3333211 111222233332 237899999999999999876
Q ss_pred hCC
Q psy673 451 QEE 453 (512)
Q Consensus 451 ~g~ 453 (512)
.+.
T Consensus 171 ~~~ 173 (201)
T PRK15416 171 RGV 173 (201)
T ss_pred cCC
Confidence 653
No 36
>KOG3734|consensus
Probab=99.57 E-value=1.9e-14 Score=141.72 Aligned_cols=161 Identities=20% Similarity=0.193 Sum_probs=115.2
Q ss_pred CcCCcEEEEecccccccccccc------------c---------------CC------CCCCCHHHHHHHHHhhhhhhhc
Q psy673 293 NITPRTVYLTRPGESINNVQAI------------L---------------GG------DSDLTAGGQEYSKCLSDFVSEK 339 (512)
Q Consensus 293 ~~~~~~I~LVRHGes~~n~~~~------------~---------------~g------D~pLTe~G~~qA~~l~~~L~~~ 339 (512)
+...+.|++|||||+.++..+. + .+ |+|||..|.-||+..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 4567899999999998744221 1 11 8999999999999999999999
Q ss_pred CCCCcEEEeCcHHHHHHHHhHccc--------CcccccccccccC----CcCCC-CCHHHHHHhchHHHHHHhcCCC-CC
Q psy673 340 NLSDLRIWTSSKEAAKQTVAQCPG--------SHKEYKALDDIHA----GICEG-QTYTEIYTNHCAQYIDTRADKF-YN 405 (512)
Q Consensus 340 ~~~~~~V~tSpl~RaiqTA~~i~~--------~~~~~~~L~E~~~----G~~eg-~t~~ei~~~~p~~~~~~~~d~~-~~ 405 (512)
++.++.||+||..||+|||..+.. .+.+.|.|-|... |.++. .+..++....+.. .-..+|. .+
T Consensus 89 ~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~V--D~~y~P~~~~ 166 (272)
T KOG3734|consen 89 GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPV--DLNYDPVYKE 166 (272)
T ss_pred CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCc--ccccchhhhh
Confidence 988889999999999999999876 3455666666421 11111 1233333221110 0001111 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHhC--CCeEEEEeChHHHHHHHHHhhCCCc
Q psy673 406 RWPQGECYKDVLTRLELIILKIEHS--KSNLLIVSHPAVLRCLLGYFQEEPP 455 (512)
Q Consensus 406 ~~p~gES~~d~~~Rv~~~i~el~~~--~~~vlIVsH~~vir~ll~~l~g~~~ 455 (512)
.+-.+||++++..|...++.+|... .+++|||+||..+....+.+.|.+.
T Consensus 167 ~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~ 218 (272)
T KOG3734|consen 167 TPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPV 218 (272)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCc
Confidence 2336899999999999999999653 5679999999999999999988654
No 37
>COG0645 Predicted kinase [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=130.69 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=121.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWI 115 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~ 115 (512)
.+++++|+||+||||+|+.|++-| +...+.+|..|+.++|.+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p--------------------------------- 43 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVP--------------------------------- 43 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCc---------------------------------
Confidence 578999999999999999999999 556778889999999822
Q ss_pred hcCCCCCCCcccccccCCCCCCCCCcccCCC-HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHH
Q psy673 116 IKGGHFPQLGDYRRRHASGSRATHDFFRSDN-EYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKI 194 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n-~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~ 194 (512)
.-...+.++|++.+ ...|......+..++.. |..+|+||||..+.+|+.+.. +
T Consensus 44 -----------------~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~--------G~~VVlDa~~~r~~~R~~~~~-~ 97 (170)
T COG0645 44 -----------------EETRGPAGLYSPAATAAVYDELLGRAELLLSS--------GHSVVLDATFDRPQERALARA-L 97 (170)
T ss_pred -----------------ccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC--------CCcEEEecccCCHHHHHHHHH-H
Confidence 01144577999985 44666667777777777 999999999999999999999 8
Q ss_pred HhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecccCCcceEE
Q psy673 195 VEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDHLSYMQ 264 (512)
Q Consensus 195 ~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~~e~~yik 264 (512)
++..|++++.|.|.|+. ++++..+..+ .+|.+|++.+. +..+..-++|.++-+..++.
T Consensus 98 A~~~gv~~~li~~~ap~-~v~~~rl~aR---~~d~sDA~~~i--------l~~q~~~~~~~~~~~~~~~~ 155 (170)
T COG0645 98 ARDVGVAFVLIRLEAPE-EVLRGRLAAR---KGDASDATFDI--------LRVQLAEDEPWTEWETADTD 155 (170)
T ss_pred HhccCCceEEEEcCCcH-HHHHHHHHHh---CCCcccchHHH--------HHHHHhhhCCcccccchhhc
Confidence 99999999999999998 5555555433 35777777777 78888889999876655544
No 38
>KOG0234|consensus
Probab=99.52 E-value=9.3e-15 Score=151.59 Aligned_cols=164 Identities=25% Similarity=0.288 Sum_probs=121.5
Q ss_pred cCCCCCeEEEEeCCCCCCccccc-----cccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 5 QRTVTPQVVAMVGLPAREFSKMA-----FYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 5 ~~~~~~~~~~~~glpar~~~~~~-----~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.....|++|+||||||||||+++ |++|++.++..|++|-+.|-. . + ..+.
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~--------------~---~--~~~s------ 77 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREA--------------V---K--KVDS------ 77 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHH--------------h---c--cccc------
Confidence 35678999999999999999744 678999999999999443331 0 0 0111
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHH
Q psy673 80 SISSATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIAL 158 (512)
Q Consensus 80 ~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~ 158 (512)
. .||.++|+++..+|.++|..+++|+.+|+ +.+|+++ +|||+|++ .++|..+..
T Consensus 78 --~----~ff~p~n~~~~~lr~~~a~~~l~D~~~~l~~~~g~va------------------i~Datntt-r~rrk~i~~ 132 (438)
T KOG0234|consen 78 --E----PFFLPDNAEASKLRKQLALLALNDLLHFLIKENGQVA------------------IFDATNTT-RERRKRIID 132 (438)
T ss_pred --c----cccccCChhhhhhhHHHHHHHhhhHHHHhhccCCceE------------------EecCCCCC-HHHHHHHHH
Confidence 1 38999999999999999999999999999 6899998 99999988 355555544
Q ss_pred HHHHHHHHHHHcCCcEE----EEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCC
Q psy673 159 QALEDLDDWIIKGGQVA----FFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFE 233 (512)
Q Consensus 159 ~~l~~~~~~l~~~g~~~----i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~ 233 (512)
.+-+. .+-.+. +++..+... +.|.+....+.+++ .++-+++++..+++...+..-|+..|
T Consensus 133 ~~~~~------~~~kv~FiEs~c~D~~ii~---~NI~~~~~~spdy~------~~~~e~a~~dfl~ri~~ye~~YePld 196 (438)
T KOG0234|consen 133 FAERE------AGFKVFFIESVCNDPNLIN---NNIREVKHVSPDYK------GKDQEEALKDFLKRIRNYEKYYEPLD 196 (438)
T ss_pred HHhhc------CCceEEEEEeecCCchhHH---hhhhhhhhcCCCcC------CCCHHHHHHHHHHHHHhhhhccCcCC
Confidence 43312 112333 445555554 45665445556677 77888999999999888888898888
No 39
>KOG4609|consensus
Probab=99.49 E-value=1.6e-13 Score=128.70 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=109.5
Q ss_pred CCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCc------ccc
Q psy673 295 TPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSH------KEY 368 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~------~~~ 368 (512)
..+.|+||||||-... +.-..|||.|++||+.+|+.|.+.+++++.|..|+|.||.|||.+|...+ +..
T Consensus 93 atRhI~LiRHgeY~~~-----g~~~hLTelGReQAE~tGkRL~elglk~d~vv~StM~RA~ETadIIlk~l~d~lk~~s~ 167 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD-----GSLEHLTELGREQAELTGKRLAELGLKFDKVVASTMVRATETADIILKHLPDDLKRVSC 167 (284)
T ss_pred hhceEEEEeccceecc-----CchhhcchhhHHHHHHHhHHHHHcCCchhhhhhhhhhhhHHHHHHHHHhCCCccceecc
Confidence 4589999999985422 22237999999999999999999999999999999999999999998632 233
Q ss_pred cccccccCCcCCCCCHHHHHHhchHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhH------h-CCCeEEEEeC
Q psy673 369 KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKF--YNRWPQGECYKDVLTRLELIILKIE------H-SKSNLLIVSH 439 (512)
Q Consensus 369 ~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~--~~~~p~gES~~d~~~Rv~~~i~el~------~-~~~~vlIVsH 439 (512)
+.|+| |-++ |. ||. ++++ -.--|..=-.|++.++.+.- + ++..-|||+|
T Consensus 168 ~ll~E-------GaP~-------pp-------dPp~k~wrp-~~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~H 225 (284)
T KOG4609|consen 168 PLLRE-------GAPY-------PP-------DPPVKHWRP-LDPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCH 225 (284)
T ss_pred ccccc-------CCCC-------CC-------CCCcccCCc-cChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEee
Confidence 44444 2221 10 000 1111 11112222367777777762 1 2456799999
Q ss_pred hHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 440 PAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 440 ~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
+.|||.+++..+..|++.... ++.+++|+-|+..
T Consensus 226 aNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~ 260 (284)
T KOG4609|consen 226 ANVIRYFICRALQFPPEGWLRMNLNHCSITWLTIS 260 (284)
T ss_pred cchhhhhhhhhhcCCcchhheecccCcceEEEEEc
Confidence 999999999999999999888 9999988877655
No 40
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.46 E-value=2.1e-13 Score=122.91 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=79.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|+|+|+||+||||+|+.|++.+. ..+++.+..+..+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~---------------------------------- 41 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGED---------------------------------- 41 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSS----------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccc----------------------------------
Confidence 689999999999999999999885 55667777776665411
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHcCCcEEEEcCCChhHHHHHHHHHHHH
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLD-DWIIKGGQVAFFDATNSTQARRNTIHHKIV 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~-~~l~~~g~~~i~Datn~~~~~R~~~~~~~~ 195 (512)
.+... .... .... +...+.++. ..+. .|..+|+|.||...+.|+.+.+ ++
T Consensus 42 --------------------~~~~~---~~~~---~~~~-~~~~~~~~~~~~l~-~g~~~vvd~~~~~~~~r~~~~~-~~ 92 (143)
T PF13671_consen 42 --------------------PPSPS---DYIE---AEER-AYQILNAAIRKALR-NGNSVVVDNTNLSREERARLRE-LA 92 (143)
T ss_dssp --------------------SGCCC---CCHH---HHHH-HHHHHHHHHHHHHH-TT-EEEEESS--SHHHHHHHHH-HH
T ss_pred --------------------cccch---hHHH---HHHH-HHHHHHHHHHHHHH-cCCCceeccCcCCHHHHHHHHH-HH
Confidence 00000 1111 1111 222332222 3333 4788999999999999999999 89
Q ss_pred hhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 196 EERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 196 ~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
++.|+++.+|.+.|+++.+.+|+..|
T Consensus 93 ~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 93 RKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp HHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred HHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 99999999999999997777776554
No 41
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.38 E-value=5.1e-12 Score=136.94 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=63.2
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCCh-hHHHHHHHHHHHHhhH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEP-DKAYEDFMYRIGHYEK 250 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~-~~a~~df~~R~~~~~~ 250 (512)
|..+|+||||.+++.|+.+++ +|+++|+++.++.+.++.+.++++|..| .. .+-++.+. +.+ +..+.+
T Consensus 420 G~sVVIDaTn~~~~~R~~~i~-lAk~~gv~v~~i~~~~p~e~~~~Rn~~R-~~--~~~s~~~vp~~v-------~~~~~k 488 (526)
T TIGR01663 420 GKRCAIDNTNPDAASRAKFLQ-CARAAGIPCRCFLFNAPLAQAKHNIAFR-EL--SDSAHIKIKDMV-------FNGMKK 488 (526)
T ss_pred CCcEEEECCCCCHHHHHHHHH-HHHHcCCeEEEEEeCCCHHHHHHHHHhh-cc--CCcccCCCCHHH-------HHHHHh
Confidence 899999999999999999999 9999999999999999987777777655 33 23344433 222 556666
Q ss_pred hceeccc-CCcceEEEEec
Q psy673 251 QYQTLTE-DHLSYMQIYNV 268 (512)
Q Consensus 251 ~yepl~~-~e~~yik~~n~ 268 (512)
.|||.+. |...-|..||+
T Consensus 489 ~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 489 KFEAPALAEGFIAIHEINF 507 (526)
T ss_pred hCCCCCcccCceEEEEEeC
Confidence 7887774 33444544554
No 42
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.28 E-value=6.5e-11 Score=120.38 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=95.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh-hhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL-RWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l-~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
+.+|+++|.||+||||+|++|++.+ ++ ..++.|..|+.+.+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~-----~~l~~D~~r~~~~~~~------------------------------- 45 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKA-----VNVNRDDLRQSLFGHG------------------------------- 45 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCC-----EEEeccHHHHHhcCCC-------------------------------
Confidence 5789999999999999999999988 44 4456667776654311
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHH-HHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALED-LDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~-~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
......|.+.+.. .. .....+ +...+. .|..+|+|+||.+.+.|+.+.+
T Consensus 46 ----------------------~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~-~g~~vIid~~~~~~~~~~~~~~ 95 (300)
T PHA02530 46 ----------------------EWGEYKFTKEKED--LV-----TKAQEAAALAALK-SGKSVIISDTNLNPERRRKWKE 95 (300)
T ss_pred ----------------------cccccccChHHHH--HH-----HHHHHHHHHHHHH-cCCeEEEeCCCCCHHHHHHHHH
Confidence 0000012221111 11 111111 122222 3788999999999999999988
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceec
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTL 255 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl 255 (512)
+++++++.+.+|.+.|+.+++.+|+.+| .. ...+++.+....+|++.|...-.|+
T Consensus 96 -la~~~~~~~~~v~l~~~~e~~~~R~~~R-~~------~~~~~~~i~~~~~~~~~~~~~~~p~ 150 (300)
T PHA02530 96 -LAKELGAEFEEKVFDVPVEELVKRNRKR-GE------RAVPEDVLRSMFKQMKEYRGLVWPV 150 (300)
T ss_pred -HHHHcCCeEEEEEeCCCHHHHHHHHHcc-Cc------CCCCHHHHHHHHHHHHHhcCCCCce
Confidence 8999999988888889877777777654 11 1235666677777888776543343
No 43
>PRK06762 hypothetical protein; Provisional
Probab=99.20 E-value=1.3e-10 Score=107.96 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=81.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDW 114 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~ 114 (512)
|.+|+++|+||+||||+|+.|++.+ +.++.+++.+..|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~~l~~~~-------------------------------- 46 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRRDMLRVK-------------------------------- 46 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHHHhcccc--------------------------------
Confidence 6789999999999999999999988 33566667777775544300
Q ss_pred HhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHH
Q psy673 115 IIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKI 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~ 194 (512)
. .+. ....+...+++..++ +.|.++|+|+++.....|..+.. +
T Consensus 47 ---------------------~------~~~-~~~~~~~~~~~~~~~--------~~g~~vild~~~~~~~~~~~~~~-l 89 (166)
T PRK06762 47 ---------------------D------GPG-NLSIDLIEQLVRYGL--------GHCEFVILEGILNSDRYGPMLKE-L 89 (166)
T ss_pred ---------------------C------CCC-CcCHHHHHHHHHHHH--------hCCCEEEEchhhccHhHHHHHHH-H
Confidence 0 000 011122222222222 24899999999998888887777 8
Q ss_pred HhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 195 VEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 195 ~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
++..++++.+|-+.++.+..++|+..|
T Consensus 90 ~~~~~~~~~~v~Ldap~e~~~~R~~~R 116 (166)
T PRK06762 90 IHLFRGNAYTYYFDLSFEETLRRHSTR 116 (166)
T ss_pred HHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence 888888888888899988888887765
No 44
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.19 E-value=9.5e-11 Score=107.43 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=82.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|+++|+||+||||+|+.|++.+.+.+.++-.++.+..|+.+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~---------------------------------- 46 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDL---------------------------------- 46 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhcc----------------------------------
Confidence 4789999999999999999999988777777777777775433200
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHh
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVE 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~ 196 (512)
-|++.+.. +..+.+ ......|.+.|.++|+|++|..++.|..+.+ +++
T Consensus 47 ------------------------~~~~~~~~--~~~~~~-----~~~a~~l~~~G~~VIid~~~~~~~~R~~~~~-l~~ 94 (149)
T cd02027 47 ------------------------GFSREDRE--ENIRRI-----AEVAKLLADAGLIVIAAFISPYREDREAARK-IIG 94 (149)
T ss_pred ------------------------CCCcchHH--HHHHHH-----HHHHHHHHhCCCEEEEccCCCCHHHHHHHHH-hcC
Confidence 12222111 111111 1223334446999999999999999998888 676
Q ss_pred hcCceEEEEEEEeCCHHHHHHHHH
Q psy673 197 ERQYMLFFVESLCDDPDILDRNIK 220 (512)
Q Consensus 197 ~~~~~~~~~e~~~~d~~~~~~n~~ 220 (512)
++++.++.+.|+.+++.+|+++
T Consensus 95 --~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 95 --GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred --CCCEEEEEEeCCHHHHHHhCch
Confidence 7899999999998877777654
No 45
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.19 E-value=1.3e-10 Score=106.02 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=54.2
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|..+|+|+++..++.|+.+.+ ++ .+..+.+|.+.|+.+.+.+|+.+| .. +.. +.+. ++.+.+
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~-~~--~~~~~~~v~l~~~~~~~~~R~~~R-~~---~~~--~~~~--------~~~~~~ 133 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRG-GA--ANPRVRFVHLDGPREVLAERLAAR-KG---HFM--PADL--------LDSQFE 133 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHh-cC--CCCCEEEEEEECCHHHHHHHHHhc-cc---CCC--CHHH--------HHHHHH
Confidence 5888999999999999998888 67 788899999999987666655444 32 222 2444 777777
Q ss_pred hceecccCCc
Q psy673 251 QYQTLTEDHL 260 (512)
Q Consensus 251 ~yepl~~~e~ 260 (512)
.|||.++++.
T Consensus 134 ~~~~p~~~~~ 143 (150)
T cd02021 134 TLEPPGEDEE 143 (150)
T ss_pred HhcCCCCCCC
Confidence 8999886443
No 46
>COG4639 Predicted kinase [General function prediction only]
Probab=99.14 E-value=4.1e-10 Score=102.03 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=45.0
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNI 219 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~ 219 (512)
|...|+||||..++.|+.+++ +++++|+...+|+..-+-+...+||-
T Consensus 69 Gk~tiidAtn~rr~~r~~l~~-La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 69 GKFTIIDATNLRREDRRKLID-LAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred CCeEEEEcccCCHHHHHHHHH-HHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 999999999999999999999 99999999999999999998888883
No 47
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.09 E-value=1.6e-09 Score=111.74 Aligned_cols=189 Identities=18% Similarity=0.097 Sum_probs=107.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh-hcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR-WLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWI 115 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~-~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~ 115 (512)
+++++|+||+||||+++.|+..|. ..|+.+.++..|+.-...+- + ...=.+..+.....| +.+...++.+.--+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~-~---~~~~~~~~~~~k~~R-~~i~~~le~~v~a~ 75 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAF-E---LDQSREIPSQWKQFR-QELLKYLEHFLVAV 75 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccch-h---hhcCCCcHHHHHHHH-HHHHHHHHHHHHHh
Confidence 478999999999999999999997 57888888888765421110 0 000011233445556 44445555322111
Q ss_pred hcCCCCCC--CcccccccCCC----CCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHH
Q psy673 116 IKGGHFPQ--LGDYRRRHASG----SRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 116 ~~~~~~~~--~~~~~~~~~~~----~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~ 189 (512)
-||.+-. .|+++..-+.. ...+.-+|-..... ..-..++..++ +.+.++|+||+|..+..|..
T Consensus 76 -~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e--~~~~rLi~~~L--------srpllvilDd~fy~ks~Rye 144 (340)
T TIGR03575 76 -INGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEA--QGCHSLTKPAV--------SRPLCLVLDDNFYYQSMRYE 144 (340)
T ss_pred -cCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHH--HHHHHHhHHHH--------hCCCCceecCCCCCHHHHHH
Confidence 1332210 00000000000 00000011110000 11112222222 23778999999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceeccc
Q psy673 190 IHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTE 257 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~ 257 (512)
+.. +++.++.++..|.+.|+.+..+++|.+| . .+|++ +. ++.+...||+.+.
T Consensus 145 l~~-LAr~~~~~~~~V~ld~ple~~l~RN~~R-~---~~v~d---ev--------ie~m~~r~E~P~~ 196 (340)
T TIGR03575 145 VYQ-LARKYSLGFCQLFLDCPVESCLLRNKQR-P---VPLPD---ET--------IQLMGRKIEKPNP 196 (340)
T ss_pred HHH-HHHHhCCCEEEEEEeCCHHHHHHHHhcC-C---CCCCH---HH--------HHHHHHHhcCCCC
Confidence 999 9999999999999999999999999765 2 23332 33 5555567887764
No 48
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.09 E-value=6.5e-10 Score=110.37 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=81.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|+++|+||+||||+|+.|++++.+.+.+..+++.+..|..+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~------------------------------------ 44 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV------------------------------------ 44 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH------------------------------------
Confidence 58999999999999999999999887777777766655522110
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHh
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVE 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~ 196 (512)
|+..... ..|+.. ...+...++ .|..+|+|++|..+..|..+.. +++
T Consensus 45 -------------------------~~~~~e~--~~~~~~----~~~i~~~l~-~~~~VI~D~~~~~~~~r~~l~~-~ak 91 (249)
T TIGR03574 45 -------------------------WKEKYEE--FIRDST----LYLIKTALK-NKYSVIVDDTNYYNSMRRDLIN-IAK 91 (249)
T ss_pred -------------------------hhHHhHH--HHHHHH----HHHHHHHHh-CCCeEEEeccchHHHHHHHHHH-HHH
Confidence 0010000 111111 111222222 3788999999999999999999 899
Q ss_pred hcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 197 ERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 197 ~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
..+++++.|.+.|+.+.+++||..|
T Consensus 92 ~~~~~~~~I~l~~p~e~~~~Rn~~R 116 (249)
T TIGR03574 92 EYNKNYIIIYLKAPLDTLLRRNIER 116 (249)
T ss_pred hCCCCEEEEEecCCHHHHHHHHHhC
Confidence 9999999999999998888888754
No 49
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.06 E-value=1.7e-09 Score=108.58 Aligned_cols=148 Identities=16% Similarity=0.241 Sum_probs=86.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|+++|+||+||||+|+.|+.++.-.+....+++.+..+- .
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~-----~---------------------------------- 43 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI-----D---------------------------------- 43 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------T----------------------------------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc-----c----------------------------------
Confidence 7899999999999999999999988777777666444430 0
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHH
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFF-RSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIV 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~f-d~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~ 195 (512)
.. .| |+.+.. ..|..+-. ++...|. ...++|+|++|=.+..|-.+.. ++
T Consensus 44 --------------------~~--~y~~~~~Ek--~~R~~l~s----~v~r~ls-~~~iVI~Dd~nYiKg~RYelyc-lA 93 (270)
T PF08433_consen 44 --------------------RN--DYADSKKEK--EARGSLKS----AVERALS-KDTIVILDDNNYIKGMRYELYC-LA 93 (270)
T ss_dssp --------------------TS--SS--GGGHH--HHHHHHHH----HHHHHHT-T-SEEEE-S---SHHHHHHHHH-HH
T ss_pred --------------------hh--hhhchhhhH--HHHHHHHH----HHHHhhc-cCeEEEEeCCchHHHHHHHHHH-HH
Confidence 00 13 222222 34433322 2222332 3699999999999999999999 89
Q ss_pred hhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecccC---CcceEEEE
Q psy673 196 EERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTED---HLSYMQIY 266 (512)
Q Consensus 196 ~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~~---e~~yik~~ 266 (512)
+..+.....|-|.|+.+..+++|..|... . ..+.+. |+..-..||+.+.. |.+.+.+.
T Consensus 94 r~~~~~~c~i~~~~~~e~~~~~N~~R~~~--~---~~~~e~--------i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 94 RAYGTTFCVIYCDCPLETCLQRNSKRPEP--E---RYPEET--------IDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp HHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHH--------HHHHHHH---TTSS-GGGS-SEEEE
T ss_pred HHcCCCEEEEEECCCHHHHHHhhhccCCC--C---CCCHHH--------HHHHHHHhcCCCCCCCccCCeEEEe
Confidence 99999999999999999999999765211 1 134454 55566678877642 34455543
No 50
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.03 E-value=2.1e-09 Score=100.05 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
+|.++|+ +||..+..|+ ++.+.++++.||.+.|+++.+.+| ++.++. |+ ++++. +..|.+
T Consensus 67 ~~~~viv-~s~~~~~~r~-----~~~~~~~~~~~v~l~a~~~~l~~R-l~~R~~---~~--a~~~v--------l~~Q~~ 126 (163)
T PRK11545 67 NKVSLIV-CSALKKHYRD-----LLREGNPNLSFIYLKGDFDVIESR-LKARKG---HF--FKTQM--------LVTQFE 126 (163)
T ss_pred CCceEEE-EecchHHHHH-----HHHccCCCEEEEEEECCHHHHHHH-HHhccC---CC--CCHHH--------HHHHHH
Confidence 4666666 9999887775 344478899999999999655555 444432 44 47777 888888
Q ss_pred hceecccCCcceEEEEecCc
Q psy673 251 QYQTLTEDHLSYMQIYNVGK 270 (512)
Q Consensus 251 ~yepl~~~e~~yik~~n~g~ 270 (512)
.+||++++| ..+..+|...
T Consensus 127 ~~ep~~~~e-~~~~~id~~~ 145 (163)
T PRK11545 127 TLQEPGADE-TDVLVVDIDQ 145 (163)
T ss_pred HcCCCCCCC-CCEEEEeCCC
Confidence 999998766 4556667654
No 51
>PRK14532 adenylate kinase; Provisional
Probab=98.99 E-value=3.2e-09 Score=100.60 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=93.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
.|+++|.||+||||+|++|+..+++. .+++|+.-|.... . ..+.+ +.+..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~-----~is~~d~lr~~~~-~---------~~~~~------------~~~~~~~~ 54 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV-----QLSTGDMLRAAIA-S---------GSELG------------QRVKGIMD 54 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe-----EEeCcHHHHHHHH-c---------CCHHH------------HHHHHHHH
Confidence 58999999999999999999998654 4455544433211 0 00011 11233444
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHh
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVE 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~ 196 (512)
.|+-+| + +.-.++....+.. .+.|..+|+|+...+.++++.+.+ ++.
T Consensus 55 ~g~~~~--------------------~-------~~~~~~~~~~~~~-----~~~~~g~vldg~pr~~~q~~~~~~-~l~ 101 (188)
T PRK14532 55 RGELVS--------------------D-------EIVIALIEERLPE-----AEAAGGAIFDGFPRTVAQAEALDK-MLA 101 (188)
T ss_pred CCCccC--------------------H-------HHHHHHHHHHHhC-----cCccCcEEEeCCCCCHHHHHHHHH-HHH
Confidence 443332 1 1111222222211 234678999999999999998888 788
Q ss_pred hcCceE-EEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceec
Q psy673 197 ERQYML-FFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTL 255 (512)
Q Consensus 197 ~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl 255 (512)
..|..+ ++|.+.|+++.+++|...|... .+ .+++...+|.+|++.|.+.-.|+
T Consensus 102 ~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~--~~----r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 102 SRGQKIDVVIRLKVDDEALIERIVKRFEE--QG----RPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred hcCCCCCEEEEEECCHHHHHHHHHcCcCc--CC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 888765 7888999997777766544211 11 22333457888888887766664
No 52
>PRK14531 adenylate kinase; Provisional
Probab=98.98 E-value=6e-09 Score=98.68 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=53.1
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
+..+|+|+.+.+.++++.+.+ ++...+.++ ++|.+.|+++.+++|...| .. + ++-...+.+|++.|++
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~-~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R-~r--~-------dD~~e~i~~Rl~~y~~ 147 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEP-LLEELKQPIEAVVLLELDDAVLIERLLAR-GR--A-------DDNEAVIRNRLEVYRE 147 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHH-HHHHcCCCCCeEEEEECCHHHHHHHhhcC-CC--C-------CCCHHHHHHHHHHHHH
Confidence 455788999999999998877 788777654 4788899987666665543 21 1 1123467889999988
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
..+|+-
T Consensus 148 ~~~pv~ 153 (183)
T PRK14531 148 KTAPLI 153 (183)
T ss_pred HHHHHH
Confidence 888864
No 53
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.91 E-value=1.1e-08 Score=96.22 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=57.9
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHh
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQ 251 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~ 251 (512)
++.+|+|+.+.+.+++..+.+ ++....-+-++|.+.|+++.+++|...|... .+ ..++....+.+|++.|.+.
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~-~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~--~~----r~dd~~e~~~~r~~~y~~~ 148 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEK-LMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS--SG----RVDDNIESIKKRFRTYNEQ 148 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHhcCCcc--CC----CCCCCHHHHHHHHHHHHHH
Confidence 678999999999999888877 5543222334778889997777776654221 11 1222345678889888887
Q ss_pred ceeccc--CCcceEEEEecC
Q psy673 252 YQTLTE--DHLSYMQIYNVG 269 (512)
Q Consensus 252 yepl~~--~e~~yik~~n~g 269 (512)
..|+-+ .+...+..||+-
T Consensus 149 ~~~i~~~~~~~~~~~~Id~~ 168 (183)
T TIGR01359 149 TLPVIEHYENKGKVKEINAE 168 (183)
T ss_pred HHHHHHHHHhCCCEEEEECC
Confidence 777542 222234455653
No 54
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.88 E-value=1e-08 Score=96.88 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..+.+|+++|+||+||||+|+.|+..+.-.|..+..++.+..|+.+.+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~------------------------------ 65 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDL------------------------------ 65 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcccc------------------------------
Confidence 45789999999999999999999999975555566666666665443200
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
.|.+.+. .+..+. +.++...+...|.++|+|+++..++.|+.+.+
T Consensus 66 ----------------------------~~~~~~~--~~~~~~-----~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~ 110 (184)
T TIGR00455 66 ----------------------------GFSEEDR--KENIRR-----IGEVAKLFVRNGIIVITSFISPYRADRQMVRE 110 (184)
T ss_pred ----------------------------CCCHHHH--HHHHHH-----HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHH
Confidence 1222111 111111 22233334446999999999999999998888
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNI 219 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~ 219 (512)
++... ++++|.+.|+.+.+.+|+.
T Consensus 111 -~~~~~--~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 111 -LIEKG--EFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred -hCcCC--CeEEEEEeCCHHHHHHhCc
Confidence 66644 6778888999887777743
No 55
>PRK14527 adenylate kinase; Provisional
Probab=98.87 E-value=2.7e-08 Score=94.71 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=62.7
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
+..+|+|+...+.++++.+.+ +++..|.++ +++.+.|+++.+++|...|.... + ..++-..-+.+|++.|.+
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~-~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~--~----r~dd~~~~~~~R~~~y~~ 155 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDR-LLEELGARLLAVVLLEVPDEELIRRIVERARQE--G----RSDDNEETVRRRQQVYRE 155 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC--C----CCCCCHHHHHHHHHHHHH
Confidence 456999998888888887777 788888776 46889999988888877664321 1 112234567889999998
Q ss_pred hceeccc--CCcceEEEEecCc
Q psy673 251 QYQTLTE--DHLSYMQIYNVGK 270 (512)
Q Consensus 251 ~yepl~~--~e~~yik~~n~g~ 270 (512)
..+|+-+ .+..-+..||+.+
T Consensus 156 ~~~~v~~~y~~~~~~~~id~~~ 177 (191)
T PRK14527 156 QTQPLVDYYEARGHLKRVDGLG 177 (191)
T ss_pred HhHHHHHHHHhcCCEEEEECCC
Confidence 8888652 1222345556543
No 56
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.87 E-value=2.4e-08 Score=91.93 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=80.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDW 114 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~ 114 (512)
+.+|.+.||||+||||||+.|.+.|...|.++.++..+..|..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~---------------------------------- 47 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA---------------------------------- 47 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT----------------------------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC----------------------------------
Confidence 5789999999999999999999999999999999999888855432
Q ss_pred HhcCCCCCCCcccccccCCCCCCCCCc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 115 IIKGGHFPQLGDYRRRHASGSRATHDF-FRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
++ |+. +-|..-+ ..+.++...|.+.|.++|+++....++.|+.+.+
T Consensus 48 -------------------------dl~fs~------~dR~e~~-rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~- 94 (156)
T PF01583_consen 48 -------------------------DLGFSK------EDREENI-RRIAEVAKLLADQGIIVIVAFISPYREDREWARE- 94 (156)
T ss_dssp -------------------------T--SSH------HHHHHHH-HHHHHHHHHHHHTTSEEEEE----SHHHHHHHHH-
T ss_pred -------------------------CCCCCH------HHHHHHH-HHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHH-
Confidence 01 111 2222222 2334555666667999999999999999999888
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
++... +++.|-+.|+-+..++|.
T Consensus 95 ~~~~~--~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 95 LIPNE--RFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHTT--EEEEEEEES-HHHHHHHT
T ss_pred hCCcC--ceEEEEeCCCHHHHHHhC
Confidence 56544 677777788877666663
No 57
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.85 E-value=2.1e-08 Score=92.76 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=33.7
Q ss_pred HHHcCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 167 WIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 167 ~l~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
.+.. |..+|+|+|+.+++.|+.+. .++..+.++-+.|+.+.+.+|...|
T Consensus 66 ~l~~-~~~~Vi~~t~~~~~~r~~~~-----~~~~~~~~i~l~~~~e~~~~R~~~R 114 (163)
T TIGR01313 66 AAAK-NKVGIITCSALKRHYRDILR-----EAEPNLHFIYLSGDKDVILERMKAR 114 (163)
T ss_pred HHhc-CCCEEEEecccHHHHHHHHH-----hcCCCEEEEEEeCCHHHHHHHHHhc
Confidence 3343 45569999998887776443 4677787888889987666655443
No 58
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.84 E-value=1.7e-08 Score=94.76 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCh-hHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 171 GGQVAFFDATNS-TQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 171 ~g~~~i~Datn~-~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
.|..+|+|+++. ..+.|+.+.. + .+.++++|++.|+++++.+|+.+|
T Consensus 84 ~G~~VIvD~~~~~~~~~r~~~~~-~---~~~~~~~v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 84 AGANVIADDVFLGRAALQDCWRS-F---VGLDVLWVGVRCPGEVAEGRETAR 131 (175)
T ss_pred CCCcEEEeeeccCCHHHHHHHHH-h---cCCCEEEEEEECCHHHHHHHHHhc
Confidence 499999999998 5666665544 3 357899999999997777777654
No 59
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.80 E-value=1.8e-08 Score=113.11 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=83.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+.+|+++|+||+||||+|+.|++.|.+.|..+..++.|..|+.+.+ .
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~-~------------------------------- 506 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR-D------------------------------- 506 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC-C-------------------------------
Confidence 48999999999999999999999999988888888889888864432 0
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
..|++ +.|....... .++...+.+.|.++|+||++..++.|+.+.+
T Consensus 507 --------------------------~~~~~------~~r~~~~~~l-~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~- 552 (632)
T PRK05506 507 --------------------------LGFSD------ADRVENIRRV-AEVARLMADAGLIVLVSFISPFREERELARA- 552 (632)
T ss_pred --------------------------CCCCH------HHHHHHHHHH-HHHHHHHHhCCCEEEEECCCCCHHHHHHHHH-
Confidence 01222 1122221211 1222223345899999999999999998877
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
++.+. ++++|.+.|+.+.+.+|+
T Consensus 553 l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 553 LHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred hcccC--CeEEEEECCCHHHHHhhC
Confidence 56544 677888899987777764
No 60
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.77 E-value=3.7e-08 Score=108.72 Aligned_cols=120 Identities=23% Similarity=0.181 Sum_probs=83.6
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALE 109 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~ 109 (512)
....+..|+++|+||+||||+|+.|+..|++ .|..+..+..+..|+.+.+ . .
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g-e----~---------------------- 440 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS-E----L---------------------- 440 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC-C----C----------------------
Confidence 5667889999999999999999999999998 6666777778888765554 1 0
Q ss_pred HHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHH
Q psy673 110 DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~ 189 (512)
.|+.. .|+..... +..+...+.+.|.++|+|+++..++.|+.
T Consensus 441 -------------------------------~f~~~------er~~~~~~-l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~ 482 (568)
T PRK05537 441 -------------------------------GFSKE------DRDLNILR-IGFVASEITKNGGIAICAPIAPYRATRRE 482 (568)
T ss_pred -------------------------------CCCHH------HHHHHHHH-HHHHHHHHHhCCCEEEEEeCCchHHHHHH
Confidence 22221 11111111 11122223335899999999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeCCHHHHHH
Q psy673 190 IHHKIVEERQYMLFFVESLCDDPDILDR 217 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~e~~~~d~~~~~~ 217 (512)
+.+ ++++.+ .+++|.+.++.+.+.+|
T Consensus 483 nr~-llk~~g-~fivV~L~~p~e~l~~R 508 (568)
T PRK05537 483 VRE-MIEAYG-GFIEVHVATPLEVCEQR 508 (568)
T ss_pred HHH-HHhhcC-CEEEEEEcCCHHHHHHh
Confidence 999 787766 45667778887655555
No 61
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.76 E-value=8.8e-08 Score=90.33 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=53.8
Q ss_pred cEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhc
Q psy673 173 QVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQY 252 (512)
Q Consensus 173 ~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~y 252 (512)
...|+ ||+..+..|+. +++.+.++.||.+.|+.+.+.+|..+| .. ++ ++++. ++.|.+.+
T Consensus 77 ~g~iv-~s~~~~~~R~~-----~r~~~~~~~~v~l~a~~~~l~~Rl~~R-~~---~~--~~~~v--------l~~Q~~~~ 136 (176)
T PRK09825 77 TGFIV-CSSLKKQYRDI-----LRKSSPNVHFLWLDGDYETILARMQRR-AG---HF--MPPDL--------LQSQFDAL 136 (176)
T ss_pred CEEEE-EEecCHHHHHH-----HHhhCCCEEEEEEeCCHHHHHHHHhcc-cC---CC--CCHHH--------HHHHHHHc
Confidence 33355 99998888774 455788999999999996655555443 32 33 47777 88888899
Q ss_pred eecccCCcceEEEEecCc
Q psy673 253 QTLTEDHLSYMQIYNVGK 270 (512)
Q Consensus 253 epl~~~e~~yik~~n~g~ 270 (512)
||.+.+|..++. +|+..
T Consensus 137 e~~~~~e~~~~~-~d~~~ 153 (176)
T PRK09825 137 ERPCADEHDIAR-IDVNH 153 (176)
T ss_pred CCCCCCcCCeEE-EECCC
Confidence 988766655555 45554
No 62
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.72 E-value=8.9e-08 Score=91.81 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=80.8
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
+...+.+|+++|++|+||||+|+.|++.|...|.++..++.+..|+.+.+ .
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~-~---------------------------- 70 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS-D---------------------------- 70 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh-c----------------------------
Confidence 34567899999999999999999999999777777777776666643222 0
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTI 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~ 190 (512)
+ -|.+.... +..+. +.++...+.+.|.++|.+..+..++.|+.+
T Consensus 71 ----------~-------------------~~~~~~~~--~~~~~-----l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~ 114 (198)
T PRK03846 71 ----------L-------------------GFSDADRK--ENIRR-----VGEVAKLMVDAGLVVLTAFISPHRAERQMV 114 (198)
T ss_pred ----------C-------------------CcCcccHH--HHHHH-----HHHHHHHHhhCCCEEEEEeCCCCHHHHHHH
Confidence 0 12232211 11111 222233343348899988888889999999
Q ss_pred HHHHHhhcCceEEEEEEEeCCHHHHHH
Q psy673 191 HHKIVEERQYMLFFVESLCDDPDILDR 217 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~e~~~~d~~~~~~ 217 (512)
.+ ++... ++++|.+.|+.+.+.+|
T Consensus 115 r~-~l~~~--~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 115 RE-RLGEG--EFIEVFVDTPLAICEAR 138 (198)
T ss_pred HH-HcccC--CEEEEEEcCCHHHHHhc
Confidence 99 67665 46678889998776666
No 63
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.70 E-value=1.1e-07 Score=89.03 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=74.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDW 114 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~ 114 (512)
..+|+++|+||+||||+|+.|+..+...|.++.+++.+..|+.+.. .
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~-~-------------------------------- 50 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK-G-------------------------------- 50 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc-C--------------------------------
Confidence 4589999999999999999999999877767777777766644331 0
Q ss_pred HhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHH
Q psy673 115 IIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKI 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~ 194 (512)
+ -|.+.+.. +..+.++ .+...+...|.++|+|+++..++.|+.+.+ +
T Consensus 51 ------~-------------------~~~~~~r~--~~~~~~~-----~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~-~ 97 (175)
T PRK00889 51 ------L-------------------GFSKEDRD--TNIRRIG-----FVANLLTRHGVIVLVSAISPYRETREEVRA-N 97 (175)
T ss_pred ------C-------------------CCChhhHH--HHHHHHH-----HHHHHHHhCCCEEEEecCCCCHHHHHHHHh-h
Confidence 0 12222111 1111221 111222335889999999887777776665 3
Q ss_pred HhhcCceEEEEEEEeCCHHHHHHH
Q psy673 195 VEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 195 ~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
. .++++|.+.|+.+++.+|+
T Consensus 98 ~----~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 98 I----GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred c----CCeEEEEEcCCHHHHHHhC
Confidence 3 3567888899988777775
No 64
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.69 E-value=3.2e-07 Score=87.02 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=92.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|++.|+||+||||.|+.|++.|+.-+.++..+.. +|++...-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k-dy~~~i~~------------------------------------ 45 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK-DYLRGILW------------------------------------ 45 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch-hhhhheec------------------------------------
Confidence 68899999999999999999999765544443322 23322111
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccC-CCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHH
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRS-DNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIV 195 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~-~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~ 195 (512)
|. .+..-...|+-.-+.+...+.+-++ ...||+|+||--...|..+.- .+
T Consensus 46 --------------------------DEslpi~ke~yres~~ks~~rlldSalk--n~~VIvDdtNYyksmRrqL~c-ea 96 (261)
T COG4088 46 --------------------------DESLPILKEVYRESFLKSVERLLDSALK--NYLVIVDDTNYYKSMRRQLAC-EA 96 (261)
T ss_pred --------------------------ccccchHHHHHHHHHHHHHHHHHHHHhc--ceEEEEecccHHHHHHHHHHH-HH
Confidence 11 1212122333333333332222232 579999999999998888888 79
Q ss_pred hhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 196 EERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 196 ~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
+++....-+|-..|+-+..+++|..+ . ..+..|. +......||+..
T Consensus 97 k~~~tt~ciIyl~~plDtc~rrN~er-g------epip~Ev--------l~qly~RfEePn 142 (261)
T COG4088 97 KERKTTWCIIYLRTPLDTCLRRNRER-G------EPIPEEV--------LRQLYDRFEEPN 142 (261)
T ss_pred HhcCCceEEEEEccCHHHHHHhhccC-C------CCCCHHH--------HHHHHHhhcCCC
Confidence 99999999999999999999999643 1 1456566 555555677665
No 65
>PLN02200 adenylate kinase family protein
Probab=98.68 E-value=1.9e-07 Score=92.02 Aligned_cols=165 Identities=17% Similarity=0.229 Sum_probs=94.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh-hhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY-RRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
.|.+|+++|.||+||||+|++|++.+++. .++.|+. |+...+.+ +.. ..+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~s-----------~~~------------~~i~ 93 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASNS-----------EHG------------AMIL 93 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhccC-----------hhH------------HHHH
Confidence 56899999999999999999999998553 4555544 33332200 001 1223
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
+.+..|.-+| . +.-..+....+.. ..++..|+|+...+.+++..+.+
T Consensus 94 ~~~~~G~~vp----------------------~-----e~~~~~l~~~l~~------~~~~~~ILDG~Prt~~q~~~l~~ 140 (234)
T PLN02200 94 NTIKEGKIVP----------------------S-----EVTVKLIQKEMES------SDNNKFLIDGFPRTEENRIAFER 140 (234)
T ss_pred HHHHcCCCCc----------------------H-----HHHHHHHHHHHhc------CCCCeEEecCCcccHHHHHHHHH
Confidence 3333333332 1 1111111222221 12456899999999888877666
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceeccc--CCcceEEEEecCc
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTE--DHLSYMQIYNVGK 270 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~--~e~~yik~~n~g~ 270 (512)
++.. .+-+++.+.|+++.+++|...|. .. ..++...-+.+|++.|.+..+|+-+ ++..-+..+|+.+
T Consensus 141 -~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~-~~-------r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~ 209 (234)
T PLN02200 141 -IIGA--EPNVVLFFDCPEEEMVKRVLNRN-QG-------RVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVG 209 (234)
T ss_pred -Hhcc--CCCEEEEEECCHHHHHHHHHcCc-CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 4421 23367778899977777665442 11 1122345677899999988887542 2222344456543
No 66
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.62 E-value=1e-06 Score=84.67 Aligned_cols=72 Identities=6% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHH
Q psy673 158 LQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKA 237 (512)
Q Consensus 158 ~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a 237 (512)
...+..+...+...|.++|+|+++.....|+.. ...++ +++.+.++|++.+++++..+.. +-++.++.+-
T Consensus 83 ~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~-----~~~~v--~~i~l~v~d~e~lr~Rl~~R~~---~~~~~~p~~~ 152 (197)
T PRK12339 83 MPGINRVIRRALLNGEDLVIESLYFHPPMIDEN-----RTNNI--RAFYLYIRDAELHRSRLADRIN---YTHKNSPGKR 152 (197)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH-----HhcCe--EEEEEEeCCHHHHHHHHHHHhh---cccCCCcHHH
Confidence 445566666554459999999999999887532 22333 4555566677777666665443 3444566653
Q ss_pred HH
Q psy673 238 YE 239 (512)
Q Consensus 238 ~~ 239 (512)
+.
T Consensus 153 ~~ 154 (197)
T PRK12339 153 LA 154 (197)
T ss_pred HH
Confidence 33
No 67
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.62 E-value=2.6e-07 Score=88.63 Aligned_cols=135 Identities=14% Similarity=0.215 Sum_probs=77.3
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
....|.++++.|-||+|||+++..+...+. +.+..+++.|..|+.+.... ++..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---------------~~~~--------- 64 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---------------ELLK--------- 64 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---------------HHHH---------
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---------------hhhh---------
Confidence 346799999999999999999999988775 55778889999986653200 0000
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTI 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~ 190 (512)
.+ +...+...+..+....++ +.+...+.|..+|+|.|++..+.-..+
T Consensus 65 ------~~-------------------~~~~~~~~~~~a~~~~~~--------~~~~a~~~~~nii~E~tl~~~~~~~~~ 111 (199)
T PF06414_consen 65 ------AD-------------------PDEASELTQKEASRLAEK--------LIEYAIENRYNIIFEGTLSNPSKLRKL 111 (199)
T ss_dssp ------HH-------------------CCCTHHHHHHHHHHHHHH--------HHHHHHHCT--EEEE--TTSSHHHHHH
T ss_pred ------hh-------------------hhhhHHHHHHHHHHHHHH--------HHHHHHHcCCCEEEecCCCChhHHHHH
Confidence 00 000111112222233333 333333348999999999998877778
Q ss_pred HHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhc
Q psy673 191 HHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLT 225 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~ 225 (512)
++ .+++.|+.+.++=+.|+.+..+.+...|....
T Consensus 112 ~~-~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 112 IR-EAKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp HH-HHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred HH-HHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 88 69999999877777788777777766665444
No 68
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.60 E-value=4.1e-07 Score=88.27 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=58.7
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhc--CCCC----C--------------
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLT--GPDY----Q-------------- 230 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~--~~dy----~-------------- 230 (512)
+..+|+|+...+.++...+.+ .+...+..+ ++|.+.|+++.+++|...|..+. +..| .
T Consensus 78 ~~g~VlDGfPr~~~qa~~l~~-~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ 156 (215)
T PRK00279 78 KNGFLLDGFPRTIPQAEALDE-MLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEE 156 (215)
T ss_pred cCCEEEecCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCc
Confidence 346899998888888777777 567777655 78999999988777776654211 0011 0
Q ss_pred -CCChhHHHHHHHHHHHHhhHhceecc
Q psy673 231 -GFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 231 -~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
....++...-+.+|+..|.+..+|+-
T Consensus 157 l~~r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 157 LIQRADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 01234556778999999999988875
No 69
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.54 E-value=6.1e-07 Score=81.63 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
|+++|+||+||||+|+.|+..|+|..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 789999999999999999999976444
No 70
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.54 E-value=1.2e-06 Score=82.96 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=62.8
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHh--cCCCCC-----------CCChhHHH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKL--TGPDYQ-----------GFEPDKAY 238 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~--~~~dy~-----------~~~~~~a~ 238 (512)
++..|+|+...+.++++.+.+ .....+.+.++|.+.|+++.+++|...|... .+..|. ....++..
T Consensus 77 ~~~~vldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~ 155 (194)
T cd01428 77 KKGFILDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNE 155 (194)
T ss_pred cCCEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCH
Confidence 567899998888888887777 5654556777888899998877877665321 011221 11223334
Q ss_pred HHHHHHHHHhhHhceeccc--CCcceEEEEecC
Q psy673 239 EDFMYRIGHYEKQYQTLTE--DHLSYMQIYNVG 269 (512)
Q Consensus 239 ~df~~R~~~~~~~yepl~~--~e~~yik~~n~g 269 (512)
.-+.+|+..|....+|+-+ .+...+..+|+.
T Consensus 156 ~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~ 188 (194)
T cd01428 156 ETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGS 188 (194)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECC
Confidence 6789999999998888762 222333445554
No 71
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.53 E-value=1.5e-06 Score=92.51 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=92.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..|.+|+++|.||+||||+|.+||..+++ ..+++.|.+|..+.+.- +.+++.. +-.++ -.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR~~lr~~i--~~e~~P~-----------Lh~St---y~ 312 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVREVLRAMV--SKDLLPT-----------LHAST---FN 312 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHHHHHHhhc--chhhccc-----------hhhch---hh
Confidence 46899999999999999999999999976 23667888887666511 0000000 00000 00
Q ss_pred HHHh-cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 113 DWII-KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
.|-. ..+.. .....-|+..-..+++.--+.+..+++.+.+.....|.++|+|+++.....++
T Consensus 313 A~~~~~~~~~--------------~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~--- 375 (475)
T PRK12337 313 AWRALLPPGE--------------GLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR--- 375 (475)
T ss_pred HHhhccCccc--------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---
Confidence 1110 00000 00000111111233333333444456666655544599999999999996543
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHh
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDRNIKEVKL 224 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~ 224 (512)
.....+..++.+++.|+|++.+++++..+..
T Consensus 376 --~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 376 --HPYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred --HHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 3556788999999999999999988876554
No 72
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.47 E-value=8e-07 Score=100.31 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=101.5
Q ss_pred CCeEEEEeCCCCCCccccc-----cccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCC
Q psy673 9 TPQVVAMVGLPAREFSKMA-----FYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISS 83 (512)
Q Consensus 9 ~~~~~~~~glpar~~~~~~-----~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~ 83 (512)
.+.+|+||||||+|||.++ |+.|.+.++.+|++|-.++--. + .. +.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~-------~---------~~----------~~--- 264 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE-------R---------RG----------GA--- 264 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhc-------c---------CC----------CC---
Confidence 3568999999999999755 5679999999999997666410 0 00 11
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHH
Q psy673 84 ATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALED 163 (512)
Q Consensus 84 ~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~ 163 (512)
+|.+.|.. ..+.+.+...++|+.+|+.+.|.++ +||++|.+ ..+|..+++ .+.+
T Consensus 265 ----~~~~~~~~--~~e~~~~~~~~~d~~~~v~~~Ggva------------------I~DatN~t-~~rR~~~~~-~~~~ 318 (664)
T PTZ00322 265 ----VSSPTGAA--EVEFRIAKAIAHDMTTFICKTDGVA------------------VLDGTNTT-HARRMALLR-AIRE 318 (664)
T ss_pred ----cCCCCCHH--HHHHHHHHHHHHHHHHHHhcCCCEE------------------EEeCCCCC-HHHHHHHHH-HHHH
Confidence 12233333 3335568888899999998766677 99999988 244444433 3333
Q ss_pred HHHHHHcCCcEEEEcCCChhHHHHHHHH-HHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChh
Q psy673 164 LDDWIIKGGQVAFFDATNSTQARRNTIH-HKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPD 235 (512)
Q Consensus 164 ~~~~l~~~g~~~i~Datn~~~~~R~~~~-~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~ 235 (512)
.. ...+..+++++..++..++-+.-+ ..+....+ +.+++.++..++.+.+.+-|..++++
T Consensus 319 ~~--~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~----------~~e~~~~~~~~~~~~~~~~Ye~~~~~ 379 (664)
T PTZ00322 319 TG--LIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG----------APEDFVDRYYEVIEQLEAVYKSLNPV 379 (664)
T ss_pred cC--CCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 10 011237999999888876543222 21111112 24566777777777777888876643
No 73
>PRK13808 adenylate kinase; Provisional
Probab=98.43 E-value=1.6e-06 Score=89.24 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=92.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
.||++|-||+||||++..|+..++..++ +.|+.-|...... ... -..+.+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i-----s~gdlLR~~i~~~----------s~~------------g~~~~~~~~ 54 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL-----STGDMLRAAVAAG----------TPV------------GLKAKDIMA 54 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee-----cccHHHHHHhhcC----------Chh------------hHHHHHHHH
Confidence 5889999999999999999999866444 4443322211100 000 012334445
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHh
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVE 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~ 196 (512)
+|+-|| + +.-..+..+.+.. .+...-.|+|.--.+.++-+.+.+ +..
T Consensus 55 ~G~lVP----------------------d-----eiv~~li~e~l~~-----~~~~~G~ILDGFPRt~~QA~~L~~-ll~ 101 (333)
T PRK13808 55 SGGLVP----------------------D-----EVVVGIISDRIEQ-----PDAANGFILDGFPRTVPQAEALDA-LLK 101 (333)
T ss_pred cCCCCC----------------------H-----HHHHHHHHHHHhc-----ccccCCEEEeCCCCCHHHHHHHHH-HHH
Confidence 665554 1 1111122222211 112345899997777777776666 666
Q ss_pred hcCce-EEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 197 ERQYM-LFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 197 ~~~~~-~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
..++. -++|++.|+++.+++|...|+......-.....|+....|.+|++.|...-+|+-
T Consensus 102 ~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl 162 (333)
T PRK13808 102 DKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLV 162 (333)
T ss_pred hcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 66654 3688889999888777765532110000011233345679999999998877765
No 74
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.42 E-value=1.4e-06 Score=81.60 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=35.1
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
|...+.+|+++|+||+||||+|+.|++.|.-.+.++..++.+..|
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 566788999999999999999999999997544445555444554
No 75
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.42 E-value=2.6e-06 Score=80.16 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=45.5
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|..+|+|+...+..+.+.+. .....+.++|.+.|+.+.+++|..+|.. .++ ..+.....|.+|++.|.+
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~----~~~~~~~~vi~l~~~~~~~~~Rl~~R~~--~~~----r~d~~~~~~~~r~~~~~~ 150 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFE----RRIGPPTLVLYFDCSEDTMVKRLLKRAE--TSG----RVDDNEKTIKKRLETYYK 150 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcccc--cCC----CCCCCHHHHHHHHHHHHH
Confidence 378889999877664444332 2234466788889998776666654421 122 223334568888887765
Q ss_pred hceec
Q psy673 251 QYQTL 255 (512)
Q Consensus 251 ~yepl 255 (512)
.-.|+
T Consensus 151 ~~~~~ 155 (188)
T TIGR01360 151 ATEPV 155 (188)
T ss_pred hhHHH
Confidence 54554
No 76
>PLN02674 adenylate kinase
Probab=98.37 E-value=3.9e-06 Score=83.07 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=100.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..+..|++.|-||+||||+|+.|++.+++.++. .|+.-|.... + .... -..+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his-----~GdllR~~i~-~---------~s~~------------g~~i~ 81 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA-----TGDMLRAAVA-A---------KTPL------------GIKAK 81 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEc-----hhHHHHHHHh-c---------cChh------------hHHHH
Confidence 345789999999999999999999999776553 3433322111 0 0000 02334
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
+++.+|.-|| | +.--.+..+.+.. .+.+..+|+|.---|.++-+.+.+
T Consensus 82 ~~~~~G~lvp--------------------d-------~iv~~lv~~~l~~-----~~~~~g~ilDGfPRt~~Qa~~l~~ 129 (244)
T PLN02674 82 EAMDKGELVS--------------------D-------DLVVGIIDEAMKK-----PSCQKGFILDGFPRTVVQAQKLDE 129 (244)
T ss_pred HHHHcCCccC--------------------H-------HHHHHHHHHHHhC-----cCcCCcEEEeCCCCCHHHHHHHHH
Confidence 4555555554 1 1111222222221 123567999998888888777766
Q ss_pred HHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhc--CCCC----C-----C----------CChhHHHHHHHHHHHHhhH
Q psy673 193 KIVEERQYML-FFVESLCDDPDILDRNIKEVKLT--GPDY----Q-----G----------FEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 193 ~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~--~~dy----~-----~----------~~~~~a~~df~~R~~~~~~ 250 (512)
+....|+.+ .+|+..|+++.+++|...|+.+. +.-| . + ...|+...-+++|++.|.+
T Consensus 130 -~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~ 208 (244)
T PLN02674 130 -MLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHK 208 (244)
T ss_pred -HHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHH
Confidence 566566443 57788899988888888775431 1111 0 0 1345566789999999998
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
.-.|+-
T Consensus 209 ~t~pv~ 214 (244)
T PLN02674 209 QTEPVI 214 (244)
T ss_pred HhHHHH
Confidence 888875
No 77
>PRK01184 hypothetical protein; Provisional
Probab=98.35 E-value=3.3e-06 Score=79.68 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=41.6
Q ss_pred HcCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHh
Q psy673 169 IKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHY 248 (512)
Q Consensus 169 ~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~ 248 (512)
..++.++|+|++. +..+++.+.+ .+ +..++.|.+.|+++..++|...| .. ++ |. ....++.+|++.+
T Consensus 77 ~~~~~~vvidg~r-~~~e~~~~~~-~~---~~~~~~i~v~~~~~~~~~Rl~~R-~~--~~----d~-~~~~~~~~r~~~q 143 (184)
T PRK01184 77 EKGDEVVVIDGVR-GDAEVEYFRK-EF---PEDFILIAIHAPPEVRFERLKKR-GR--SD----DP-KSWEELEERDERE 143 (184)
T ss_pred hcCCCcEEEeCCC-CHHHHHHHHH-hC---CcccEEEEEECCHHHHHHHHHHc-CC--CC----Ch-hhHHHHHHHHHHH
Confidence 3468899999984 5555555555 33 34556788899998777776543 21 21 11 1255777777664
No 78
>PRK14529 adenylate kinase; Provisional
Probab=98.34 E-value=7e-06 Score=80.26 Aligned_cols=156 Identities=16% Similarity=0.210 Sum_probs=93.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
.|++.|.||+||||+|+.|+..++..+++ .|..-|.... .....+. .+..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is-----~gdllr~~i~----------~~t~lg~------------~i~~~i~ 54 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE-----SGAIFREHIG----------GGTELGK------------KAKEYID 54 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc-----cchhhhhhcc----------CCChHHH------------HHHHHHh
Confidence 58899999999999999999999765543 3333222111 0111222 2334554
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHh
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVE 196 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~ 196 (512)
+|.-+| + +.--.+....+.. ...+-.|+|.---|.++-+.+.+ +..
T Consensus 55 ~G~lvp----------------------d-----ei~~~lv~~~l~~------~~~~g~iLDGfPRt~~Qa~~l~~-~l~ 100 (223)
T PRK14529 55 RGDLVP----------------------D-----DITIPMILETLKQ------DGKNGWLLDGFPRNKVQAEKLWE-ALQ 100 (223)
T ss_pred ccCcch----------------------H-----HHHHHHHHHHHhc------cCCCcEEEeCCCCCHHHHHHHHH-HHH
Confidence 554443 1 1111111222211 12466999999999988777776 565
Q ss_pred hcCceE-EEEEEEeCCHHHHHHHHHHHHhcC------------CCCCC-----------CChhHH-HHHHHHHHHHhhHh
Q psy673 197 ERQYML-FFVESLCDDPDILDRNIKEVKLTG------------PDYQG-----------FEPDKA-YEDFMYRIGHYEKQ 251 (512)
Q Consensus 197 ~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~------------~dy~~-----------~~~~~a-~~df~~R~~~~~~~ 251 (512)
..++.+ .+|+..|+|+.+++|...|+.+.. |...+ ...|+. .+-+++|++.|.+.
T Consensus 101 ~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~ 180 (223)
T PRK14529 101 KEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDT 180 (223)
T ss_pred hcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHc
Confidence 555443 588889999988888887765432 11111 133442 45788999999875
Q ss_pred ce
Q psy673 252 YQ 253 (512)
Q Consensus 252 ye 253 (512)
-+
T Consensus 181 ~~ 182 (223)
T PRK14529 181 ET 182 (223)
T ss_pred cc
Confidence 44
No 79
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.33 E-value=4.3e-06 Score=80.83 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=53.9
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhc--CCCC---------------CC---
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLT--GPDY---------------QG--- 231 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~--~~dy---------------~~--- 231 (512)
+...|+|+...+.++++.+.+ .... ...++|.+.|+++.+++|...|+.+. +..| .+
T Consensus 78 ~~~~ilDGfPrt~~Qa~~l~~-~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l 154 (210)
T TIGR01351 78 ENGFILDGFPRTLSQAEALDA-LLKE--KIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELL 154 (210)
T ss_pred CCcEEEeCCCCCHHHHHHHHH-Hhcc--CCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcc
Confidence 567999998888888777666 3432 34578888999987777776653211 0111 00
Q ss_pred -CChhHHHHHHHHHHHHhhHhceecc
Q psy673 232 -FEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 232 -~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
...++-..-+++|++.|.+...|+-
T Consensus 155 ~~R~dD~~e~i~~Rl~~y~~~~~~v~ 180 (210)
T TIGR01351 155 IQREDDTEEVVKKRLEVYKEQTEPLI 180 (210)
T ss_pred ccCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 1223345578999999998888875
No 80
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.29 E-value=9.2e-06 Score=79.86 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=96.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
+..|+.|+++|-||+||||+|+.|+..+++.. ++.|..=|.... . .+..+ +.+
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~-----is~gdllr~~~~-~---------~t~lg------------~~i 55 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKH-----INMGNILREEIK-A---------KTTIG------------KEI 55 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCcE-----EECChHHHHHhh-c---------CChHH------------HHH
Confidence 34567899999999999999999999996544 445544333221 0 00111 123
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
..++.+|.-+| .. .--++....+.. .+.+.+...|+|+---+.+++..+.
T Consensus 56 ~~~~~~G~lvp----------------------d~-----iv~~lv~~~l~~---~~~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 56 QKVVTSGNLVP----------------------DN-----LVIAIVKDEIAK---VTDDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred HHHHHcCCcCC----------------------HH-----HHHHHHHHHHHh---hccccCceEEEecCCCCHHHHHHHH
Confidence 33444443333 11 111122222211 1123467799999777887776654
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcC--CC----------C-------------CC------CChhHHHHH
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTG--PD----------Y-------------QG------FEPDKAYED 240 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~--~d----------y-------------~~------~~~~~a~~d 240 (512)
+ . +-..++|...++++.+++|...|+.+.. .. | .+ ...++...-
T Consensus 106 ~-~----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~ 180 (229)
T PTZ00088 106 K-I----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEI 180 (229)
T ss_pred h-c----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHH
Confidence 4 2 2344677888999888888887753211 00 1 00 244555668
Q ss_pred HHHHHHHhhHhceecc
Q psy673 241 FMYRIGHYEKQYQTLT 256 (512)
Q Consensus 241 f~~R~~~~~~~yepl~ 256 (512)
+++|++.|++.-+|+-
T Consensus 181 i~~Rl~~Y~~~t~pl~ 196 (229)
T PTZ00088 181 VAHRLNTYESTNSPII 196 (229)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 8999999998888875
No 81
>PRK14528 adenylate kinase; Provisional
Probab=98.28 E-value=1.3e-05 Score=76.27 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=53.7
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCc-eEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQY-MLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~-~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
....|+|.--.+.++-+.+.+ +....+. .-++|...|+++.+++|...|.... ...++...-+.+|++.|.+
T Consensus 79 ~~g~viDG~Pr~~~qa~~l~~-~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~------gr~dd~~e~i~~Rl~~y~~ 151 (186)
T PRK14528 79 KNGFLLDGFPRTVEQADALDA-LLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE------GRADDNEATIKNRLDNYNK 151 (186)
T ss_pred cCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc------CCCCCCHHHHHHHHHHHHH
Confidence 355899996566666555666 5554443 3468889999988888887764332 1223345569999999999
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
.-.|+-
T Consensus 152 ~~~pv~ 157 (186)
T PRK14528 152 KTLPLL 157 (186)
T ss_pred HhHHHH
Confidence 988875
No 82
>PRK14530 adenylate kinase; Provisional
Probab=98.28 E-value=5.9e-06 Score=80.17 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=48.9
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCC--CCC-------------------
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGP--DYQ------------------- 230 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~--dy~------------------- 230 (512)
....|+|.-..+.+.++.+.+ +. + .-++|...|+++.+++|..+|...... .|.
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~-~~---~-~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl 156 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLES-IT---D-LDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL 156 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHH-hc---C-CCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence 445899997777777665544 22 2 335677789987777666554322110 010
Q ss_pred CCChhHHHHHHHHHHHHhhHhceecc
Q psy673 231 GFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 231 ~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
....++...-+++|+..|.+.-.|+-
T Consensus 157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~ 182 (215)
T PRK14530 157 IQRDDDTEETVRERLDVFEENTEPVI 182 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 01233455679999999999888764
No 83
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.26 E-value=2.7e-06 Score=79.96 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHcCCcEEEEcCCChhHHH-HHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 168 IIKGGQVAFFDATNSTQAR-RNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 168 l~~~g~~~i~Datn~~~~~-R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
+.+.|.-+|+|..+..... .+.+.+ ++ .|++|+||.+.|+.+.+.+|...|
T Consensus 79 ~a~aG~~VIvD~v~~~~~~l~d~l~~-~L--~~~~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 79 MARAGNNVIVDDVFLGPRWLQDCLRR-LL--AGLPVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp HHHTT-EEEEEE--TTTHHHHHHHHH-HH--TTS-EEEEEEE--HHHHHHHHHHH
T ss_pred HHhCCCCEEEecCccCcHHHHHHHHH-Hh--CCCceEEEEEECCHHHHHHHHHhc
Confidence 3456999999999888754 333323 22 389999999999987555554443
No 84
>PRK02496 adk adenylate kinase; Provisional
Probab=98.20 E-value=9e-06 Score=76.75 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcC-ceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQ-YMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~-~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
....|+|..-.+.++...+.+ ++...+ .+.++|.+.|+++.+++|...| . .+| | ...-+.+|++.|++
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~-~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R-~--~~d----d---~~~~~~~r~~~y~~ 147 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDE-LLQEIGQSGERVVNLDVPDDVVVERLLAR-G--RKD----D---TEEVIRRRLEVYRE 147 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHhcC-C--CCC----C---CHHHHHHHHHHHHH
Confidence 346899998777777655555 565554 3456777888876665554433 1 122 1 22356778998888
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
.-+|+-
T Consensus 148 ~~~~v~ 153 (184)
T PRK02496 148 QTAPLI 153 (184)
T ss_pred HHHHHH
Confidence 655553
No 85
>PRK13946 shikimate kinase; Provisional
Probab=98.20 E-value=1.1e-05 Score=76.51 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.+..|+++|+||+||||+++.|+..|++.- +..+.......+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~-----id~D~~~~~~~g 50 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPF-----LDADTEIERAAR 50 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCe-----ECcCHHHHHHhC
Confidence 356799999999999999999999996543 344444444443
No 86
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.19 E-value=1e-05 Score=75.35 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=79.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
...+.+|-+.||+|+||||||.+|.+.|...|..+-++.=|..|..+..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~------------------------------- 68 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR------------------------------- 68 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC-------------------------------
Confidence 4457899999999999999999999999999999999988888855442
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
+-+|=+.+..+ ..| ++ .++...|.+.|-++|+-.-..-++.|++..
T Consensus 69 --------------------------dLgFs~edR~e--niR-Rv-----aevAkll~daG~iviva~ISP~r~~R~~aR 114 (197)
T COG0529 69 --------------------------DLGFSREDRIE--NIR-RV-----AEVAKLLADAGLIVIVAFISPYREDRQMAR 114 (197)
T ss_pred --------------------------CCCCChHHHHH--HHH-HH-----HHHHHHHHHCCeEEEEEeeCccHHHHHHHH
Confidence 00111111111 111 22 234445556799999988888899999888
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHH
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILD 216 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~ 216 (512)
+ +...- .++-|-+.|+-+...+
T Consensus 115 ~-~~~~~--~FiEVyV~~pl~vce~ 136 (197)
T COG0529 115 E-LLGEG--EFIEVYVDTPLEVCER 136 (197)
T ss_pred H-HhCcC--ceEEEEeCCCHHHHHh
Confidence 8 45433 4444445666544433
No 87
>PRK13948 shikimate kinase; Provisional
Probab=98.17 E-value=2.4e-05 Score=74.23 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=35.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
...+..|+++|++|+||||+++.|+..|+| ..+..|.++++..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~-----~~iD~D~~ie~~~g 50 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALML-----HFIDTDRYIERVTG 50 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCC-----CEEECCHHHHHHHh
Confidence 345789999999999999999999999955 44566666666655
No 88
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.17 E-value=1.9e-05 Score=72.10 Aligned_cols=141 Identities=19% Similarity=0.304 Sum_probs=81.0
Q ss_pred EecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy673 40 MVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGG 119 (512)
Q Consensus 40 ~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 119 (512)
++|-||+||||+|++|+..++. ..+++++.=|.... . .... -+.+.+.+.+|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-----~~is~~~llr~~~~-~---------~s~~------------g~~i~~~l~~g~ 53 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-----VHISVGDLLREEIK-S---------DSEL------------GKQIQEYLDNGE 53 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-----EEEEHHHHHHHHHH-T---------TSHH------------HHHHHHHHHTTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc-----ceechHHHHHHHHh-h---------hhHH------------HHHHHHHHHhhc
Confidence 4799999999999999998854 34455443322111 0 0011 123445566666
Q ss_pred CCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHhhcC
Q psy673 120 HFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQ 199 (512)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~ 199 (512)
.+| . +.--.+....+.. ....+..|+|.--.|.++-+.+.+ .....+
T Consensus 54 ~vp-------------------------~--~~v~~ll~~~l~~-----~~~~~g~ildGfPrt~~Qa~~l~~-~~~~~~ 100 (151)
T PF00406_consen 54 LVP-------------------------D--ELVIELLKERLEQ-----PPCNRGFILDGFPRTLEQAEALEE-ILEEEG 100 (151)
T ss_dssp S---------------------------H--HHHHHHHHHHHHS-----GGTTTEEEEESB-SSHHHHHHHHH-HHHHTT
T ss_pred cch-------------------------H--HHHHHHHHHHHhh-----hcccceeeeeeccccHHHHHHHHH-HHhhcc
Confidence 555 1 1111222222221 124678999997777766665665 444455
Q ss_pred ceE-EEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceec
Q psy673 200 YML-FFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTL 255 (512)
Q Consensus 200 ~~~-~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl 255 (512)
..+ .+|...|+++.+++|... +...-+.+|++.|.+.-+|+
T Consensus 101 ~~~~~vi~L~~~~~~~~~R~~~---------------d~~~~i~~Rl~~y~~~~~~i 142 (151)
T PF00406_consen 101 IPPDLVIFLDCPDETLIERLSQ---------------DNEEVIKKRLEEYRENTEPI 142 (151)
T ss_dssp SEESEEEEEE--HHHHHHHHHT---------------GSHHHHHHHHHHHHHHHHHH
T ss_pred cchheeeccccchhhhhhhccc---------------CCHHHHHHHHHHHHHHHHHH
Confidence 554 788999999777766543 23345888999998877765
No 89
>PRK14526 adenylate kinase; Provisional
Probab=98.15 E-value=2.7e-05 Score=75.66 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=88.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh-hhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY-RRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWI 115 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~ 115 (512)
.|+++|-||+||||+|+.|+..+++..+ ++|.. |+.....+ . .-+.+..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i-----s~G~llr~~~~~~t-----------~------------~g~~i~~~~ 53 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI-----STGDLFRENILNST-----------P------------LGKEIKQIV 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee-----ecChHHHHhcccCC-----------h------------hhHHHHHHH
Confidence 4788999999999999999998865443 44444 32221100 0 112234445
Q ss_pred hcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHH
Q psy673 116 IKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIV 195 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~ 195 (512)
.+|.-+| +... -++....+.. .+.....|+|.---+.++-..+.+ ..
T Consensus 54 ~~g~lvp----------------------d~~~-----~~lv~~~l~~-----~~~~~g~ilDGfPR~~~Qa~~l~~-~~ 100 (211)
T PRK14526 54 ENGQLVP----------------------DSIT-----IKIVEDKINT-----IKNNDNFILDGFPRNINQAKALDK-FL 100 (211)
T ss_pred HcCccCC----------------------hHHH-----HHHHHHHHhc-----ccccCcEEEECCCCCHHHHHHHHH-hc
Confidence 4443333 1111 1222222221 112456788987777766554443 22
Q ss_pred hhcCceEEEEEEEeCCHHHHHHHHHHHHhcC--CCC---------C----------CCChhHHHHHHHHHHHHhhHhcee
Q psy673 196 EERQYMLFFVESLCDDPDILDRNIKEVKLTG--PDY---------Q----------GFEPDKAYEDFMYRIGHYEKQYQT 254 (512)
Q Consensus 196 ~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~--~dy---------~----------~~~~~~a~~df~~R~~~~~~~yep 254 (512)
. .+.+|++.|+++.+++|...|+.+.. ..| . -...++..+-+++|++.|.+.-.|
T Consensus 101 ~----~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~p 176 (211)
T PRK14526 101 P----NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKP 176 (211)
T ss_pred C----CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhH
Confidence 1 13467777899888888776653321 111 0 024566677899999999998888
Q ss_pred cc
Q psy673 255 LT 256 (512)
Q Consensus 255 l~ 256 (512)
+-
T Consensus 177 v~ 178 (211)
T PRK14526 177 LI 178 (211)
T ss_pred HH
Confidence 75
No 90
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.11 E-value=1.2e-05 Score=75.04 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.-||++|++|+|||||.+.||+.|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 45899999999999999999999943
No 91
>PRK12338 hypothetical protein; Provisional
Probab=98.10 E-value=0.00015 Score=74.35 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.|.+|++.|.||+||||+|+.||+.+++.. +...|..|+.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcC
Confidence 578999999999999999999999997632 3356677776665
No 92
>KOG3062|consensus
Probab=98.08 E-value=1.6e-05 Score=76.36 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|.+||+|+-|..+-.|=++.- +++..+...-.|-+.|+.+...+.|- ...+|+-.+.+++. ++.+-.
T Consensus 73 k~~iVI~DslNyIKGfRYeLyC-~ak~~~tt~Cvv~t~vp~e~~r~~Ns---~~~~p~e~gy~~e~--------le~L~~ 140 (281)
T KOG3062|consen 73 KGDIVIVDSLNYIKGFRYELYC-EAKAARTTYCVVHTAVPQELCREWNS---EREDPGEDGYDDEL--------LEALVQ 140 (281)
T ss_pred cCcEEEEecccccccceeeeee-ehhccceeEEEEEecCCHHHHHHhcc---cCCCCCCCCCCHHH--------HHHHHH
Confidence 5999999999999999988888 78888877777888899887777773 23456666667665 444455
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
.||..+
T Consensus 141 RyEeP~ 146 (281)
T KOG3062|consen 141 RYEEPN 146 (281)
T ss_pred HhhCCC
Confidence 555333
No 93
>KOG3354|consensus
Probab=98.01 E-value=0.0001 Score=67.23 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=92.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
...|-+|+..|-.|+||||+++.|+.-|+|--++.+-|....-|+++...-
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gi----------------------------- 59 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGI----------------------------- 59 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCC-----------------------------
Confidence 456778999999999999999999999988655555555544444433200
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHH-HHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEY-ALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTI 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~-~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~ 190 (512)
|.|.. .--....++..+..++. .|+-+|+-+.-..+..|+-+
T Consensus 60 --------------------------------pLnD~DR~pWL~~i~~~~~~~l~-----~~q~vVlACSaLKk~YRdIL 102 (191)
T KOG3354|consen 60 --------------------------------PLNDDDRWPWLKKIAVELRKALA-----SGQGVVLACSALKKKYRDIL 102 (191)
T ss_pred --------------------------------CCCcccccHHHHHHHHHHHHHhh-----cCCeEEEEhHHHHHHHHHHH
Confidence 11111 11233344444444433 38999999999999999966
Q ss_pred HHHHHh------hcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecccCCcceEE
Q psy673 191 HHKIVE------ERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDHLSYMQ 264 (512)
Q Consensus 191 ~~~~~~------~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~~e~~yik 264 (512)
.. -.+ ....++.||-...+-+.++.|.-.| +. -|. .++. ++.|-+.-|+.+.+|...|+
T Consensus 103 r~-sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R-~g---HFM--p~~l--------leSQf~~LE~p~~~e~div~ 167 (191)
T KOG3354|consen 103 RH-SLKDGKPGKCPESQLHFILLSASFEVILKRLKKR-KG---HFM--PADL--------LESQFATLEAPDADEEDIVT 167 (191)
T ss_pred Hh-hcccCCccCCccceEEEeeeeccHHHHHHHHhhc-cc---ccC--CHHH--------HHHHHHhccCCCCCccceEE
Confidence 55 222 1235566666666665555555444 33 343 3344 55555556666655555555
Q ss_pred E
Q psy673 265 I 265 (512)
Q Consensus 265 ~ 265 (512)
+
T Consensus 168 i 168 (191)
T KOG3354|consen 168 I 168 (191)
T ss_pred E
Confidence 3
No 94
>PRK06696 uridine kinase; Validated
Probab=98.00 E-value=4.4e-05 Score=74.57 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=32.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
.+.+.+|.+.|.+|+||||+|++|++.|+..|...-+++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~ 58 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASI 58 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecc
Confidence 5678999999999999999999999999765544444333
No 95
>PRK13947 shikimate kinase; Provisional
Probab=98.00 E-value=3.6e-05 Score=71.47 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=30.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
-|+++|.||+||||+|+.|+..|+|.- +..+...+...|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~-----id~d~~~~~~~g 41 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF-----IDTDKEIEKMTG 41 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE-----EECchhhhhhcC
Confidence 389999999999999999999997643 445555555444
No 96
>PRK00625 shikimate kinase; Provisional
Probab=97.98 E-value=3.2e-05 Score=72.78 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
.|+++|+||+||||+++.|+..|++..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~i 29 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFF 29 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999999965433
No 97
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.94 E-value=3.8e-05 Score=71.07 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
..+..|+++|+||+||||+|+.|++.|++ ..++.+...+...|
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~-----~~~d~d~~~~~~~g 44 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY-----DFIDTDHLIEARAG 44 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHHcC
Confidence 45779999999999999999999999954 44455555544443
No 98
>PLN02459 probable adenylate kinase
Probab=97.91 E-value=0.0001 Score=73.51 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh-hcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR-HASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~-~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
.++.|+++|-||+||||+|+.|+..+++.++ +.|..-|. ....+ ..+ +.+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~i-----s~gdllR~ei~~~t-----------~lg------------~~i~ 79 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHI-----ATGDLVREEIKSSG-----------PLG------------AQLK 79 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEE-----eCcHHHHHHHhccc-----------hhH------------HHHH
Confidence 4577888999999999999999999976544 44433222 11100 000 2344
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
.++.+|.-|| + +.--.+....+... ...+.+..|+|.---|.++-..+.+
T Consensus 80 ~~~~~G~lVP----------------------d-----eiv~~ll~~~l~~~---~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 80 EIVNQGKLVP----------------------D-----EIIFSLLSKRLEAG---EEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred HHHHcCCccC----------------------H-----HHHHHHHHHHHhcc---cccCCceEEEeCCCCCHHHHHHHHh
Confidence 5555665565 1 22222323222221 1123467999998888877655544
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcC--CCCCC------------------------------CChhHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTG--PDYQG------------------------------FEPDKAYED 240 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~--~dy~~------------------------------~~~~~a~~d 240 (512)
+ ..+ -++|+..|+++.+++|...|+.+.. ..|.- ...++...-
T Consensus 130 -~---~~i-d~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~ 204 (261)
T PLN02459 130 -V---TDI-DLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEV 204 (261)
T ss_pred -c---CCC-CEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHH
Confidence 2 222 3578888999888888877653321 01100 234555667
Q ss_pred HHHHHHHhhHhceecc
Q psy673 241 FMYRIGHYEKQYQTLT 256 (512)
Q Consensus 241 f~~R~~~~~~~yepl~ 256 (512)
+++|++.|.+.-.|+-
T Consensus 205 i~kRL~~Y~~~t~pv~ 220 (261)
T PLN02459 205 VKARLRVYKEESQPVE 220 (261)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 8999999999888875
No 99
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.0001 Score=69.64 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=49.7
Q ss_pred EEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhc
Q psy673 174 VAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQY 252 (512)
Q Consensus 174 ~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~y 252 (512)
.+|+|.--.+...=..+-. ...++|.+. ..+++.++++.++++...+.. ..++..+.+++|+..|.+.-
T Consensus 80 ~~I~dg~PR~~~qa~~l~r-~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------r~dd~~~~~~~R~~~y~~~~ 149 (178)
T COG0563 80 GFILDGFPRTLCQARALKR-LLKELGVRLDMVIELDVPEELLLERLLGRRV---------REDDNEETVKKRLKVYHEQT 149 (178)
T ss_pred eEEEeCCCCcHHHHHHHHH-HHHHcCCCcceEEeeeCCHHHHHHHHhCccc---------cccCCHHHHHHHHHHHHhcc
Confidence 7899997777665444444 677777554 568888888666666655422 33445567888999998777
Q ss_pred eecc
Q psy673 253 QTLT 256 (512)
Q Consensus 253 epl~ 256 (512)
.|+-
T Consensus 150 ~pli 153 (178)
T COG0563 150 APLI 153 (178)
T ss_pred cchh
Confidence 7764
No 100
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.86 E-value=0.0004 Score=65.42 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
++|++.|.+|+||||+++.|+.+|+..|+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 36899999999999999999999987666554
No 101
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.77 E-value=0.00026 Score=66.42 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=31.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
+..|+++|.+|+||||+++.|+..+++ ..++.+..+....|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~-----~~vd~D~~i~~~~g 44 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKRTG 44 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC-----cEEECCchHHHHhC
Confidence 567999999999999999999998843 44555555544443
No 102
>PRK13949 shikimate kinase; Provisional
Probab=97.74 E-value=0.00016 Score=67.73 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
.|+++|.||+||||+++.||..+++..++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999976544443
No 103
>PRK06217 hypothetical protein; Validated
Probab=97.74 E-value=0.00029 Score=66.58 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..|++.|.||+||||+|++|++.++. ..++.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-----~~~~~D~~~ 36 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-----PHLDTDDYF 36 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-----cEEEcCcee
Confidence 46999999999999999999998843 445555443
No 104
>PRK07667 uridine kinase; Provisional
Probab=97.72 E-value=0.0002 Score=68.41 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=36.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+...+|.+.|.||+||||+|+.|+..|+..|.++.+|..+.+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 455899999999999999999999999888888888877753
No 105
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.70 E-value=0.00016 Score=67.25 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=29.7
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
..|+++|+||+||||+|+.|++.++|.- ++.+.......+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~-----~d~D~~~~~~~g 42 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRF-----VDTDQWLQSTSN 42 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE-----EEccHHHHHHhC
Confidence 3588899999999999999999996643 444555444333
No 106
>KOG3079|consensus
Probab=97.68 E-value=0.00059 Score=64.05 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
-+.+||..|-||+||=|.+.+|+..++|.+++ +|+.-|.-.. ++.++.+.. +.+
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlS-----aGdLLR~E~~---------~~gse~g~~------------I~~ 60 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLS-----AGDLLRAEIA---------SAGSERGAL------------IKE 60 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeec-----HHHHHHHHHc---------cccChHHHH------------HHH
Confidence 46788999999999999999999999887764 3332222111 001122222 334
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
.+++|.=|| .+.-.++.+.++.+.. .+ ...++|.---..+++..+..
T Consensus 61 ~i~~G~iVP---------------------------~ei~~~LL~~am~~~~---~~--~~fLIDGyPR~~~q~~~fe~- 107 (195)
T KOG3079|consen 61 IIKNGDLVP---------------------------VEITLSLLEEAMRSSG---DS--NGFLIDGYPRNVDQLVEFER- 107 (195)
T ss_pred HHHcCCcCc---------------------------HHHHHHHHHHHHHhcC---CC--CeEEecCCCCChHHHHHHHH-
Confidence 445665555 2444455555555532 22 22899998878877776666
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
.... .+=|.+=..|+.+..+++.+.|-+..+ ..|+-....++|++.|.+.=.|+-
T Consensus 108 ~i~~--~~~fvl~fdc~ee~~l~Rll~R~q~~~------R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 108 KIQG--DPDFVLFFDCPEETMLKRLLHRGQSNS------RSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred HhcC--CCCEEEEEeCCHHHHHHHHHhhcccCC------CCCCchHHHHHHHHHHHHcchHHH
Confidence 3332 222444458999888888887644322 334456678899999988766653
No 107
>PRK04040 adenylate kinase; Provisional
Probab=97.63 E-value=0.00042 Score=66.06 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=32.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
+.+|+++|.||+||||+++.|++.|+ .+..+++.|...+..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHHHH
Confidence 56899999999999999999999985 2345567776654433
No 108
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.61 E-value=0.0005 Score=63.52 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=28.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
++|++.|.||+||||+|+.|++.|+. .+++.+...+.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~-----~~~~~~~~~~~ 37 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSL-----KLISAGDIFRE 37 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC-----ceecHHHHHHH
Confidence 37899999999999999999998843 45565544433
No 109
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.59 E-value=0.002 Score=61.42 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=26.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
..+|++.|.+|+||||+++.|+.+|+-.|.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~ 32 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGR 32 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999976553
No 110
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.57 E-value=0.00024 Score=68.09 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=30.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.|.++|.+|+||||+++.|+..+ +..++++|...+.+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHHH
Confidence 68999999999999999999987 445667776665543
No 111
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.55 E-value=0.0014 Score=60.71 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred HcCCcEEEEcCCChhHHHHHHHHHHHHhhc---------CceEEEEEEEe--CCHHHHHHHHHHHHhcCCCCCCCChhH-
Q psy673 169 IKGGQVAFFDATNSTQARRNTIHHKIVEER---------QYMLFFVESLC--DDPDILDRNIKEVKLTGPDYQGFEPDK- 236 (512)
Q Consensus 169 ~~~g~~~i~Datn~~~~~R~~~~~~~~~~~---------~~~~~~~e~~~--~d~~~~~~n~~~~~~~~~dy~~~~~~~- 236 (512)
+++..++|+|=.|.....|+.+++ .+++. +++++-|-..- +.+++.+=-..|....+..-+....+.
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~-~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~ 130 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFE-DVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSK 130 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHH-HHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCC
Confidence 356899999999999999999998 56543 44444333333 344544444445555554443322221
Q ss_pred HHHHHHHHHHHhhHhceeccc
Q psy673 237 AYEDFMYRIGHYEKQYQTLTE 257 (512)
Q Consensus 237 a~~df~~R~~~~~~~yepl~~ 257 (512)
.......=+.-..+.|||++.
T Consensus 131 ~~~~~~~Im~gFi~rfep~~~ 151 (168)
T PF08303_consen 131 DEKKVEGIMEGFIKRFEPVDP 151 (168)
T ss_pred CHHHHHHHHHHHHHhcCCCCC
Confidence 112222224445556899883
No 112
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=0.00038 Score=65.20 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.1
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.|+++|.||+||||+|++|++.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998874
No 113
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.00093 Score=70.40 Aligned_cols=44 Identities=41% Similarity=0.613 Sum_probs=40.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
...|++|.||||-|+||||.|-+||.||...+.+.-++.+|.||
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 45689999999999999999999999999888888889999998
No 114
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.47 E-value=0.0004 Score=71.32 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=35.3
Q ss_pred cccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 30 ~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
..+..+..|+++|+||+||||+++.|+..|+| ..+..+.+..+..|
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~-----~~id~D~~i~~~~G 173 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGV-----PFVELNREIEREAG 173 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCC-----CEEeHHHHHHHHhC
Confidence 35667889999999999999999999999955 34455555544444
No 115
>PRK08233 hypothetical protein; Provisional
Probab=97.47 E-value=0.0017 Score=60.53 Aligned_cols=26 Identities=15% Similarity=0.479 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.+|++.|.||+||||+|++|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46888899999999999999999884
No 116
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.45 E-value=0.00065 Score=64.19 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
+|.++|.||+||||+|++|+..++..|.++.+++.+.+-+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 4789999999999999999999988888888898887775
No 117
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0014 Score=59.63 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
+|..+|+=+.-.++..|+.+.+ -+ .+ +.||-..-+- +++.+++..++.+ |. .++- ++.|-+
T Consensus 66 ~~~~~vi~CSALKr~YRD~LR~-~~--~~--~~Fv~L~g~~-~~i~~Rm~~R~gH---FM--~~~l--------l~SQfa 126 (161)
T COG3265 66 KNKHVVIACSALKRSYRDLLRE-AN--PG--LRFVYLDGDF-DLILERMKARKGH---FM--PASL--------LDSQFA 126 (161)
T ss_pred CCCceEEecHHHHHHHHHHHhc-cC--CC--eEEEEecCCH-HHHHHHHHhcccC---CC--CHHH--------HHHHHH
Confidence 4667888899999999997666 12 23 4455555555 5555555555543 33 4444 666656
Q ss_pred hceecccCCcceEEEEecCc
Q psy673 251 QYQTLTEDHLSYMQIYNVGK 270 (512)
Q Consensus 251 ~yepl~~~e~~yik~~n~g~ 270 (512)
.-|+.+.+| .+..+|...
T Consensus 127 ~LE~P~~de--~vi~idi~~ 144 (161)
T COG3265 127 TLEEPGADE--DVLTIDIDQ 144 (161)
T ss_pred HhcCCCCCC--CEEEeeCCC
Confidence 667777666 666666654
No 118
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.41 E-value=0.004 Score=58.95 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
..+|++.|.+|+||||+++.|+..|+..|+.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 368999999999999999999999988775543
No 119
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.39 E-value=0.0017 Score=66.08 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=34.6
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
......|++|++.|.+|+||||+|++|+.+|++ . .+++.|..|..
T Consensus 86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~---~-~vi~~D~~re~ 130 (301)
T PRK04220 86 IRKSKEPIIILIGGASGVGTSTIAFELASRLGI---R-SVIGTDSIREV 130 (301)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCC---C-EEEechHHHHH
Confidence 333456899999999999999999999999954 2 35666666633
No 120
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.38 E-value=0.0003 Score=76.68 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=31.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.|+++|+||+||||+++.|+..|++ ..+..|.++.+..|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~-----~~id~D~~i~~~~g 40 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDL-----QFIDMDEEIERREG 40 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC-----eEEECcHHHHHHcC
Confidence 5899999999999999999999954 45566666655555
No 121
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.35 E-value=0.0014 Score=62.69 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.+|.++|.+|+||||+++.|+. + +..++++|..-+...
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHHHHHHh
Confidence 4799999999999999999988 5 456778877665543
No 122
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.013 Score=54.03 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=56.7
Q ss_pred HcCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHh
Q psy673 169 IKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHY 248 (512)
Q Consensus 169 ~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~ 248 (512)
-+.|...++..|.+...-++.|.. +++.|+-+...-..-+..++--++++.+...+- .+...+.-...|+++++..
T Consensus 66 I~~~~~F~~ETtLS~~s~~~~ik~--Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GG--H~IpED~Ir~RY~rsle~l 141 (187)
T COG4185 66 IDLGRPFIAETTLSGPSILELIKT--AKAAGFYIVLNYIVIDSVELAVERVKLRVAKGG--HDIPEDKIRRRYRRSLELL 141 (187)
T ss_pred HHcCCCcceEEeeccchHHHHHHH--HHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHHH
Confidence 556999999999999998886665 999997755444444555566666665544322 2445566667888888877
Q ss_pred hHhceecc
Q psy673 249 EKQYQTLT 256 (512)
Q Consensus 249 ~~~yepl~ 256 (512)
...++-.+
T Consensus 142 ~~~l~l~d 149 (187)
T COG4185 142 AQALTLAD 149 (187)
T ss_pred HHHHhhcc
Confidence 65544333
No 123
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00089 Score=62.53 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.|+++|.||+||||+|++|+..++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999843
No 124
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.0014 Score=62.66 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....|+++|.+|+||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999874
No 125
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.23 E-value=0.0019 Score=57.85 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+|+++|.||+||||+|++|++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999854
No 126
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.20 E-value=0.001 Score=63.02 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=29.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.|+++|-+|+||||+++.|+... +..++++|..-+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~~~~~ 38 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIAHQVV 38 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHHHHHH
Confidence 37899999999999999999865 345677776665544
No 127
>PRK08356 hypothetical protein; Provisional
Probab=97.19 E-value=0.0052 Score=58.64 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
..+|+++|.||+||||+|+.|.+ + |+ .++..+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~---g~--~~is~~~ 37 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K---GF--CRVSCSD 37 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C---CC--cEEeCCC
Confidence 46789999999999999999964 2 33 3555664
No 128
>PRK06547 hypothetical protein; Provisional
Probab=97.19 E-value=0.0038 Score=58.68 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+.+|++.|.+|+||||+|+.|+..++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678888889999999999999999864
No 129
>PRK13973 thymidylate kinase; Provisional
Probab=97.18 E-value=0.0036 Score=60.69 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCccee
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL 68 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~ 68 (512)
...|++-|.+|+||||.++.|+.+|...|+.+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4688889999999999999999999877765543
No 130
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.16 E-value=0.0046 Score=59.83 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
..+.+|.+.|-+|+||||+++.|.. + +..+++++..-+.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-----g~~v~d~D~i~~~~~ 43 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-----GCELFEADRVAKELQ 43 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeccHHHHHHc
Confidence 3567899999999999999999987 3 557777776665554
No 131
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.00026 Score=61.68 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+|+++|.||+||||+|+.|++.++ ..+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 589999999999999999999984 455666663
No 132
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.15 E-value=0.00047 Score=67.89 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=47.1
Q ss_pred EEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhc----------CCCCcEEEeCcHHHHHHHHhHccc
Q psy673 298 TVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEK----------NLSDLRIWTSSKEAAKQTVAQCPG 363 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~----------~~~~~~V~tSpl~RaiqTA~~i~~ 363 (512)
-++++|||+..- ..||+.|.+|+..+|++|++. ......+++|+..||+|||+.+..
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~ 71 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLA 71 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHHHH
Confidence 467899999742 459999999999999999753 224568999999999999999865
No 133
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.14 E-value=0.0019 Score=60.85 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
+|.+.|.||+||||+++.|+. + +..++++|..-+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~ 37 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKIAHEVY 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHHHHhhh
Confidence 378999999999999999998 4 456778887665543
No 134
>PRK06761 hypothetical protein; Provisional
Probab=97.14 E-value=0.00093 Score=67.61 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=31.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
+.+|++.|+||+||||+++.|++.|...|+++.++..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~ 39 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLE 39 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEec
Confidence 3579999999999999999999999887776665543
No 135
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0066 Score=56.05 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=31.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
++|...|+||+||||+|+.||++| +.+.+++|..=|.++.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~-----gl~~vsaG~iFR~~A~ 40 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL-----GLKLVSAGTIFREMAR 40 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh-----CCceeeccHHHHHHHH
Confidence 368899999999999999999999 4456677766555553
No 136
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.09 E-value=0.0016 Score=69.56 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=38.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.|.+|.+||++|+||||.+.+||.+|.-.|.++-++.+|.+|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3478999999999999999999999998778888888888888
No 137
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.09 E-value=0.0027 Score=59.30 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+|+++|.+|+||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 47899999999999999999997754
No 138
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.08 E-value=0.013 Score=56.22 Aligned_cols=41 Identities=37% Similarity=0.572 Sum_probs=35.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
|.+|++||.+|+||||.+.|||.++...+.+.-+++.|.+|
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 67899999999999999999999987668888888888888
No 139
>PRK04182 cytidylate kinase; Provisional
Probab=97.08 E-value=0.0011 Score=61.57 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
++|+++|.||+||||+|+.|+..|++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 37899999999999999999999855
No 140
>PRK10867 signal recognition particle protein; Provisional
Probab=97.06 E-value=0.0019 Score=69.22 Aligned_cols=43 Identities=40% Similarity=0.546 Sum_probs=38.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~~~~r 75 (512)
..|.+|+++|++|+||||++.+||.+|... |.++-++.+|.+|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 457999999999999999999999999877 8888888888887
No 141
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.05 E-value=0.0062 Score=58.59 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
..+.+|.++|-+|+||||+++.|++.++ +..+.+++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence 4678999999999999999999999883 22344444443
No 142
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.04 E-value=0.0025 Score=70.53 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
-..||++|+||+||||+++.||+.|+|--+++
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~ 37 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADA 37 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 35799999999999999999999997744333
No 143
>PLN02199 shikimate kinase
Probab=97.02 E-value=0.0042 Score=63.06 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
...|+++|++|+||||+++.|+..|+|.-
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f 130 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF 130 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45799999999999999999999996643
No 144
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.00 E-value=0.0028 Score=59.30 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=23.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.+++++|.||+||||+++.|+..+.+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 368999999999999999999988654
No 145
>PLN02842 nucleotide kinase
Probab=96.99 E-value=0.009 Score=64.97 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=52.5
Q ss_pred EEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhc--CCCC----C-----------CCChhHH
Q psy673 175 AFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLT--GPDY----Q-----------GFEPDKA 237 (512)
Q Consensus 175 ~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~--~~dy----~-----------~~~~~~a 237 (512)
.|+|.---+...-+.+.+ ....+-++|...|+++.+++|...|+.+. +..| . ....++.
T Consensus 79 ~ILDGfPRt~~Qa~~Le~----~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~ 154 (505)
T PLN02842 79 WLLDGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDT 154 (505)
T ss_pred EEEeCCCCcHHHHHHHHh----cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCC
Confidence 677985445433222222 12234467888999988888866553221 1111 1 0133556
Q ss_pred HHHHHHHHHHhhHhceecccCCcceEEEEecCc
Q psy673 238 YEDFMYRIGHYEKQYQTLTEDHLSYMQIYNVGK 270 (512)
Q Consensus 238 ~~df~~R~~~~~~~yepl~~~e~~yik~~n~g~ 270 (512)
..-+++|++.|++.-+|+-+.....+..+|+..
T Consensus 155 eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsq 187 (505)
T PLN02842 155 EEKVKARLQIYKKNAEAILSTYSDIMVKIDGNR 187 (505)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCC
Confidence 678999999999998887532222345566543
No 146
>KOG2134|consensus
Probab=96.97 E-value=0.0013 Score=67.87 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=42.0
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
|..+|.|-||.+.+.|+..++ .+++.++++--+|..|+.+.....|+.|
T Consensus 320 ~~sVvidnt~pd~~sr~~~~~-~a~e~~~p~rcf~~~~s~eq~~hn~~fR 368 (422)
T KOG2134|consen 320 GKSVVIDNTNPDAESRKYYLD-CATEREIPIRCFEMNSSVEQAQHNNRFR 368 (422)
T ss_pred ccEEeeCCCCcchHHHHHHhh-hHHHhCccceeeeeccHHHhhhccccch
Confidence 778888999999999999999 8999999999999999986555555444
No 147
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.97 E-value=0.0041 Score=58.89 Aligned_cols=157 Identities=13% Similarity=0.217 Sum_probs=78.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWI 115 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~ 115 (512)
++|.+.|-.|+||||+++.|.+ + +..+|++|..-+.+. .++...-..+++..-.. +|
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-----G~~vidaD~i~~~l~----------~~~~~~~~~l~~~FG~~-------il 57 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-----GFPVIDADEIAHELY----------EPGSEGYKALKERFGEE-------IL 57 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-----T-EEEEHHHHHHHCT----------SCTCHHHHHHHHHHGGG-------GB
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-----CCCEECccHHHHHHh----------hcCHHHHHHHHHHcCcc-------cc
Confidence 4788999999999999999988 5 567888887765444 33333333333322100 11
Q ss_pred hcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHH-HHHHHHHH--cCCcEEEEcCCChhHHHHHHHHH
Q psy673 116 IKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQAL-EDLDDWII--KGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l-~~~~~~l~--~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
.++|.+ ++. ....-+| .|+...+..+.+..-.. +++..++. ....++|+|++-.-.. .+..
T Consensus 58 ~~~g~i------dR~-----~L~~~vF--~d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~---~~~~ 121 (180)
T PF01121_consen 58 DEDGEI------DRK-----KLAEIVF--SDPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFES---GLEK 121 (180)
T ss_dssp ETTSSB-------HH-----HHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTT---TGGG
T ss_pred CCCCCC------hHH-----HHHHHHh--cCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhh---hHhh
Confidence 111111 111 0000112 23344455556655555 44555662 2237899999765442 1111
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
..+ .+++| .|+.+..++|.++|. +++.++ +..|+..|..
T Consensus 122 ----~~D-~vi~V--~a~~e~ri~Rl~~R~--------~~~~~~----~~~ri~~Q~~ 160 (180)
T PF01121_consen 122 ----LCD-EVIVV--YAPEEIRIKRLMERD--------GLSEEE----AEARIASQMP 160 (180)
T ss_dssp ----GSS-EEEEE--E--HHHHHHHHHHHH--------TSTHHH----HHHHHHTS--
T ss_pred ----hhc-eEEEE--ECCHHHHHHHHHhhC--------CCcHHH----HHHHHHhCCC
Confidence 111 34444 577766677776652 345454 5566666643
No 148
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.94 E-value=0.009 Score=64.24 Aligned_cols=43 Identities=42% Similarity=0.710 Sum_probs=38.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..|.+|+++|++|+||||++.+||.+|...|.++-++.++.+|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 4588999999999999999999999998888888888777776
No 149
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.0025 Score=60.35 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..++++|-+|+||||+++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4688999999999999999988774
No 150
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.91 E-value=0.0071 Score=58.38 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.1
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
....+..|+++|-+|+|||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456788999999999999999999764
No 151
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.89 E-value=0.0058 Score=58.78 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=28.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
+|.+.|-+|+||||+++.|+. + +..++++|..-+.+
T Consensus 3 ~igitG~igsGKst~~~~l~~-~-----g~~vid~D~i~~~~ 38 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-E-----GFLIVDADQVARDI 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCeEEeCcHHHHHH
Confidence 689999999999999999986 2 45678888665444
No 152
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.84 E-value=0.0055 Score=59.22 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
..|..|.+.|.+|+||||+++.|++.++ ..+++++..-+.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg-----~~vidaD~i~~~l 44 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN-----LNVVCADTISREI 44 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC-----CeEEeccHHHHHH
Confidence 4578899999999999999999998763 4466666555444
No 153
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0069 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+.+|+++|-+|+|||+|+++|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998765
No 154
>KOG0780|consensus
Probab=96.81 E-value=0.0069 Score=62.88 Aligned_cols=44 Identities=34% Similarity=0.531 Sum_probs=40.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
-+.|.+|.+|||-|+||||.+.+||.|+..-|+++-++-+|..|
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 46689999999999999999999999999999999888888888
No 155
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.80 E-value=0.0025 Score=67.76 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.|.+.|-+|+||||+++.|++ + ++.++++|..-+.+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~-----G~~vidaD~i~~~l~ 39 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-L-----GAVVVDADVLAREVV 39 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCeEEehHHHHHHHh
Confidence 589999999999999999998 4 466778887765544
No 156
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.69 E-value=0.02 Score=58.26 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=29.6
Q ss_pred CcEEEEcCCChh--HHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHH
Q psy673 172 GQVAFFDATNST--QARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNI 219 (512)
Q Consensus 172 g~~~i~Datn~~--~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~ 219 (512)
.-.+++|.++.. ++.++.+.. +.. .|+.+.+|-..|+++.+++|.-
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~-L~~-~g~~~~iI~L~a~~e~L~~Rl~ 104 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDE-LRE-RGIDVRVLFLDASDEVLIRRYS 104 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHH-HHH-cCCcEEEEEEECCHHHHHHHHh
Confidence 347889998763 345555444 444 4877666777888866666543
No 157
>KOG3220|consensus
Probab=96.66 E-value=0.03 Score=53.51 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=92.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
+|-+.|-.|+||||+++.+..+ ++.++++|..-|....+. .|+ -..+++-.- .++|.
T Consensus 3 iVGLTGgiatGKStVs~~f~~~------G~~vIDaD~vaR~vv~PG-~p~---------~~~ive~FG-------~eiLl 59 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFKAL------GIPVIDADVVAREVVEPG-TPA---------YRRIVEAFG-------TEILL 59 (225)
T ss_pred EEEeecccccChHHHHHHHHHc------CCcEecHHHHHHHHhcCC-ChH---------HHHHHHHhC-------ceeec
Confidence 4566788899999999888732 677888887776655411 001 011111000 11233
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHH-H--HHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEY-A--LSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~-~--~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
++|.+ +++ ....-+|+....+ . .-..=.+..+...++..++..|-.+.|+|.+ .+++
T Consensus 60 ~~G~i------nR~-----~LG~~vF~~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiP--------LLFE- 119 (225)
T KOG3220|consen 60 EDGEI------NRK-----VLGKRVFSDPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIP--------LLFE- 119 (225)
T ss_pred cCCcc------cHH-----HHhHHHhCCHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEech--------HHHH-
Confidence 34333 222 1222244332111 0 0012234455566666677889999999985 3444
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc-cCCcceEEEEecCc
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT-EDHLSYMQIYNVGK 270 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~-~~e~~yik~~n~g~ 270 (512)
. +-..+---.|=+.|+.+..++|.++|- +.+. +|-.+|+..| =|++ .-+.+-+.+-|.|+
T Consensus 120 ~-~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd--------~lse----~dAe~Rl~sQ----mp~~~k~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 120 A-KLLKICHKTVVVTCDEELQLERLVERD--------ELSE----EDAENRLQSQ----MPLEKKCELADVVIDNNGS 180 (225)
T ss_pred H-hHHhheeeEEEEEECcHHHHHHHHHhc--------cccH----HHHHHHHHhc----CCHHHHHHhhheeecCCCC
Confidence 1 111222234557999999999998762 2232 3344566655 3444 23556666656664
No 158
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.64 E-value=0.0072 Score=61.03 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=36.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+|.++|.+|+||||++.+||.++...|.+.-++..|.+|
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 457888889999999999999999998777777777777776
No 159
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.59 E-value=0.0076 Score=64.59 Aligned_cols=43 Identities=40% Similarity=0.548 Sum_probs=37.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh-hcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR-WLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~~~~~~~~~~~~r 75 (512)
+.|.+|+++|+||+||||++.+||.++. ..|.++-++.+|.+|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4578999999999999999999999986 467788888888777
No 160
>PRK03839 putative kinase; Provisional
Probab=96.50 E-value=0.0012 Score=62.10 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.1
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.|+++|.||+||||+|+.|++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 689999999999999999999996533
No 161
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.43 E-value=0.0092 Score=57.27 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=27.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
+|.++|-+|+||||+++.|+++ ++.++++|..-+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL------GAFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHH
Confidence 4788999999999999988763 46667777655443
No 162
>PLN02422 dephospho-CoA kinase
Probab=96.41 E-value=0.019 Score=56.52 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=29.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.|.+.|-+|+||||+++.|++ + ++.++++|..-+.+.
T Consensus 3 ~igltG~igsGKstv~~~l~~-~-----g~~~idaD~~~~~l~ 39 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-S-----GIPVVDADKVARDVL 39 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-----CCeEEehhHHHHHHH
Confidence 589999999999999999985 2 566778887665443
No 163
>PRK13975 thymidylate kinase; Provisional
Probab=96.41 E-value=0.059 Score=50.95 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+..|++.|++|+||||+|+.|++.|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999963
No 164
>KOG1533|consensus
Probab=96.35 E-value=0.051 Score=53.14 Aligned_cols=129 Identities=25% Similarity=0.404 Sum_probs=82.1
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~ 116 (512)
.-+.+|-||+||||-+.....+|+.+|-..-++|.+..--.+.- +.+.++|+-+ +++|+.+-+.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y-------------~~~v~I~eli---t~edvm~~~~ 67 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPY-------------ECAVDIRELI---TVEDVMEELG 67 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCC-------------CCcccHHHHc---cHHHHHHHhC
Confidence 45788999999999999999999999988888888755422211 3456667644 3344443331
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH----Hc-CCcEEEEcCC-----ChhHHH
Q psy673 117 KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWI----IK-GGQVAFFDAT-----NSTQAR 186 (512)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l----~~-~g~~~i~Dat-----n~~~~~ 186 (512)
..|+... ..+.+.+.+-++|| ++ .+.-+|||++ |.....
T Consensus 68 -------------------------LGPNg~l------~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~ 116 (290)
T KOG1533|consen 68 -------------------------LGPNGAL------KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDS 116 (290)
T ss_pred -------------------------CCCchhH------HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccch
Confidence 1133222 33455565555777 33 6788999985 233333
Q ss_pred HHHHHHHHHhhcCceEEEEEE----EeCCHH
Q psy673 187 RNTIHHKIVEERQYMLFFVES----LCDDPD 213 (512)
Q Consensus 187 R~~~~~~~~~~~~~~~~~~e~----~~~d~~ 213 (512)
-+.|++ ..++.++++..|-. -|+||.
T Consensus 117 l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~ 146 (290)
T KOG1533|consen 117 LNKIFR-KLEKLDYRLVAVNLIDSHYCSDPS 146 (290)
T ss_pred HHHHHH-HHHHcCceEEEEEeeeceeeCChH
Confidence 456788 46669988765543 377763
No 165
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.35 E-value=0.041 Score=56.82 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=35.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+|.++|.+|+||||++.+||.++.-.|.++-++..|.+|
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 467999999999999999999999998777777777666666
No 166
>PLN02924 thymidylate kinase
Probab=96.31 E-value=0.023 Score=55.51 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.+|++.|..|+||||+++.|+++|+..|+.+..+
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 457899999999999999999999999888765433
No 167
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.30 E-value=0.032 Score=51.35 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=39.3
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhh-cCceEEEEEEEeCCHHHHHHHHHHHHhcCCCC
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEE-RQYMLFFVESLCDDPDILDRNIKEVKLTGPDY 229 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~-~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy 229 (512)
++|.-+|.|+.--++ ..+.+ -+.. .|++|.||=+.|+++++.++..++ .-..|.|
T Consensus 112 d~G~~~i~Ddv~~~r---~~L~D-c~r~l~g~~v~~VGV~~p~E~~~~Re~rr-~dR~pG~ 167 (205)
T COG3896 112 DNGMNVIADDVIWTR---EWLVD-CLRVLEGCRVWMVGVHVPDEEGARRELRR-GDRHPGW 167 (205)
T ss_pred ccCcceeehhcccch---hhHHH-HHHHHhCCceEEEEeeccHHHHHHHHhhc-CCcCcch
Confidence 369999999988775 56777 3433 489999999999998777666543 3333433
No 168
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.25 E-value=0.029 Score=55.69 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=30.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.+|.+.|-.|+||||+++.|.+.+ +..++++|..-|.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~ 40 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQ 40 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHH
Confidence 368899999999999999999765 557778887665543
No 169
>PRK14974 cell division protein FtsY; Provisional
Probab=96.24 E-value=0.041 Score=57.22 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=37.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.|.+|+++|.||+||||++.+|+.+|...|.++-+++.+.+|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 3478999999999999999999999998877777777777776
No 170
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.22 E-value=0.1 Score=50.33 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
..+|-++|.||+||||+|+-++. + +..++++|..-|..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-----G~~vidaD~v~r~~ 39 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-----GFPVIDADDVAREV 39 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-----CCeEEEccHHHHHH
Confidence 46789999999999999999998 5 55677787665533
No 171
>PRK13974 thymidylate kinase; Provisional
Probab=96.22 E-value=0.099 Score=50.59 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=25.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
..+|++.|.+|+||||.++.|+.+|..-
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~ 30 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSS 30 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999643
No 172
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.15 E-value=0.044 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.|++.|.+|+||||+++.|+++++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 173
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.12 E-value=0.061 Score=51.15 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=28.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+|.++|.+|+||||+++.|+..+ .+..+.++..+.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 47899999999999999999988 23455666666544
No 174
>KOG0635|consensus
Probab=96.08 E-value=0.028 Score=51.37 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..++|-+.||+|+||||+|-+|.++|.--|.-+=++.-+..|
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR 71 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc
Confidence 458999999999999999999999997766666556555666
No 175
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.18 Score=46.86 Aligned_cols=39 Identities=41% Similarity=0.584 Sum_probs=33.1
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+++++|.||+||||++.+++..+...|.+.-+++.+.+|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 678999999999999999999987777777777777655
No 176
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.00 E-value=0.043 Score=51.77 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
..|+++|-+|+||+|+++.|+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998875
No 177
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.99 E-value=0.083 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+|.++|.+|+||||+++.|+..++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346889999999999999999999875
No 178
>KOG4238|consensus
Probab=95.95 E-value=0.037 Score=56.85 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=38.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
.+-|.+.||+|.||||++.+|-+||..+|+.|--+.-+..|..+
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl 93 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGL 93 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhh
Confidence 57888999999999999999999999999998777666777443
No 179
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.95 E-value=0.023 Score=49.79 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
|++.|.+|+|||+++..|+.++...+.++-++..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999999999997666555555444
No 180
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.94 E-value=0.0056 Score=56.41 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.3
Q ss_pred CCCCCchhhhhHHHHhhhcCCcc
Q psy673 44 PARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 44 p~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
||+||||+++.||+.|+|.-+++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~ 23 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDL 23 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CCCcHHHHHHHHHHHhCCCcccc
Confidence 79999999999999998754433
No 181
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.87 E-value=0.059 Score=52.79 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
+.+|.++|.||+||||+|+.|++.|+...+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~ 33 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYL 33 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 678999999999999999999999965333
No 182
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.86 E-value=0.012 Score=60.09 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHhhhhhhhcC---------CCCcEEEeCcHHHHHHHHhHccc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEKN---------LSDLRIWTSSKEAAKQTVAQCPG 363 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~~---------~~~~~V~tSpl~RaiqTA~~i~~ 363 (512)
...||+.|.+|...+|+++++.- .+.+.|+||...||++||+.+..
T Consensus 60 ~g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af~~ 114 (347)
T PF00328_consen 60 WGQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAFLQ 114 (347)
T ss_dssp TTSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHHHH
Confidence 33499999999999999987541 14578999999999999998754
No 183
>PTZ00301 uridine kinase; Provisional
Probab=95.77 E-value=0.12 Score=50.29 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=28.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh-cCCc-ceeeccchhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW-LGLN-VRLFNLGDYR 75 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~-~~~~~~~~~r 75 (512)
.+|-+.|-||+||||+|++|++.|+. .|.. +.++..|.|-
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 57889999999999999999988853 2322 2344445443
No 184
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.18 Score=53.87 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=34.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh-hhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL-RWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l-~~~~~~~~~~~~~~~r 75 (512)
.+.+++++|.+|+||||++.+||..+ ...|.++-++..|.+|
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 35789999999999999999999754 4556677777777777
No 185
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.043 Score=54.25 Aligned_cols=144 Identities=15% Similarity=0.223 Sum_probs=77.3
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHH--
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQAL-- 108 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~-- 108 (512)
....|++|++.|-||.||||||..||+.|+-. .++..|..|..+-+.- +.++. .++
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~----~visTD~IREvlR~ii--~~~l~----------------PtLh~ 142 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIR----SVISTDSIREVLRKII--SPELL----------------PTLHT 142 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCc----eeecchHHHHHHHHhC--CHHhc----------------chhhH
Confidence 45679999999999999999999999999531 2233444443322200 00000 000
Q ss_pred HHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHH
Q psy673 109 EDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRN 188 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~ 188 (512)
..-.+|=.- .... ..+...++|-|....= .---+.+.+.|+.+ |..+|+..+..-+ .
T Consensus 143 Ssy~Awkal----------r~~~-~~~piiaGF~dqa~~V-~~GI~~VI~RAi~e--------G~~lIIEGvHlVP---g 199 (299)
T COG2074 143 SSYDAWKAL----------RDPT-DENPIIAGFEDQASAV-MVGIEAVIERAIEE--------GEDLIIEGVHLVP---G 199 (299)
T ss_pred hHHHHHHHh----------cCCC-CCcchhhhHHHHhHHH-HHHHHHHHHHHHhc--------CcceEEEeeeecc---c
Confidence 001122210 0000 0001344454443222 12344566677777 9999999998888 3
Q ss_pred HHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHH
Q psy673 189 TIHHKIVEERQYMLFFVESLCDDPDILDRNIKEV 222 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~ 222 (512)
++-+ ... +..+++.=+...|+++.+.+.-.+
T Consensus 200 ~i~~-~~~--~~n~~~~~l~i~dee~Hr~RF~~R 230 (299)
T COG2074 200 LIKE-EAL--GNNVFMFMLYIADEELHRERFYDR 230 (299)
T ss_pred cccH-hhh--ccceEEEEEEeCCHHHHHHHHHHH
Confidence 3433 222 444555555677777777666544
No 186
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.60 E-value=0.0087 Score=47.29 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEecCCCCCCchhhhhHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
+|++.|.||+||||+++.|++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997
No 187
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.59 E-value=0.0067 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhhhHHHHh
Q psy673 38 VAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l 59 (512)
|++.|.||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 188
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.51 E-value=0.074 Score=54.66 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+.+|+++|-+|+|||++|..|++.++ ..++++|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~-----~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLN-----GEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCC-----CcEEeccc
Confidence 56899999999999999999999884 44555553
No 189
>PRK13768 GTPase; Provisional
Probab=95.48 E-value=0.18 Score=50.32 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=34.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+..+++.|.+|+||||++..++.++...|.++-+++.+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 3578899999999999999999999888888888877653
No 190
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.36 E-value=0.067 Score=58.64 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
.+.+|.+.|.+|+||||+|+.|++.|++. .++.|.+-|.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~-----~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLL-----YLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EecCCceehH
Confidence 46789999999999999999999999653 4455544444
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.36 Score=51.29 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+..|.++|.+|+||||++.+||.+|...|.+.-++.+|.+|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 457899999999999999999999887667777777887777
No 192
>KOG0739|consensus
Probab=95.20 E-value=0.079 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
-|.+.|-||+||||||+++|---
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc
Confidence 57889999999999999999754
No 193
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.14 E-value=0.017 Score=54.94 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=40.4
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
..+++|++..+.-.... +..-.+++ +||+ ++.+..+.|.+.|-.. ..+.+++++...+..+...+++
T Consensus 106 ~~~ivIvEG~~~l~~~~------l~~l~D~~-ifld--~~~~~~l~Rri~RD~~----~rG~~~~~~~~~~~~~~~~~~~ 172 (194)
T PF00485_consen 106 PSDIVIVEGIYALYDEE------LRDLFDLK-IFLD--ADEDLRLERRIQRDVA----ERGRSPEEVIAQYERVRPGYER 172 (194)
T ss_dssp S-SEEEEEETTTTSSHC------HGGG-SEE-EEEE--E-HHHHHHHHHHHHHH----HS-S-HHHHHHHHHTHHHHHHH
T ss_pred CCCEEEEcccceeeeee------ecccceeE-EEec--ccHHHHHHHHhhhhcc----ccCCcceeEEEEeecCChhhhh
Confidence 46899999988542111 22333454 5665 5555567777766322 1256788888888766666665
Q ss_pred hceec
Q psy673 251 QYQTL 255 (512)
Q Consensus 251 ~yepl 255 (512)
.-+|-
T Consensus 173 ~I~p~ 177 (194)
T PF00485_consen 173 YIEPQ 177 (194)
T ss_dssp CTGGG
T ss_pred heecc
Confidence 55554
No 194
>PRK12377 putative replication protein; Provisional
Probab=95.06 E-value=0.069 Score=53.18 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
....-+++.|-||+|||+||..|+..+.-.|..+..+++
T Consensus 99 ~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 99 TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 334578999999999999999999999655555544433
No 195
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.04 E-value=0.28 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
+|++-|.-|+||||+++.|+.+|++.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~ 26 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMK 26 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47889999999999999999999764
No 196
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.02 E-value=0.12 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.8
Q ss_pred ecCCCCCCchhhhhHHHHhhhcCCc
Q psy673 41 VGLPARGKSYMATKLCRYLRWLGLN 65 (512)
Q Consensus 41 vGlp~rGKS~~a~~l~~~l~~~~~~ 65 (512)
=|+-|+||||+++.|+++|...|++
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3899999999999999999988775
No 197
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.021 Score=52.88 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=34.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
...+.|+..|.||+||||++++|+..|+-.|++..=|-..+.|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3467899999999999999999999998877655444444444
No 198
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.27 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=23.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+|-..|-+|+||||+|++|+..++
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 7888999999999999999999997
No 199
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.97 E-value=0.013 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.5
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
|+++|.||+|||++|+.|+++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999984
No 200
>PRK13695 putative NTPase; Provisional
Probab=94.85 E-value=0.1 Score=48.56 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.8
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
+.|+++|.||+||||+++.|+..+...|.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~ 29 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGY 29 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 36889999999999999999887754343
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.73 E-value=0.18 Score=51.82 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..-+++.|-||+|||+||.+|+..+...|..+..+++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34689999999999999999999997667666555443
No 202
>PRK15453 phosphoribulokinase; Provisional
Probab=94.70 E-value=0.028 Score=56.83 Aligned_cols=43 Identities=14% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
.+.+|.+.|.||+||||+|++|+..++..+.++.++.-|.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4568899999999999999999998988777777777776654
No 203
>PRK08181 transposase; Validated
Probab=94.67 E-value=0.16 Score=51.21 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=30.6
Q ss_pred cccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 30 ~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
.|....--++++|-||+|||++|..|+..+...|..+.
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~ 138 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVL 138 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCcee
Confidence 37666677999999999999999999998865554443
No 204
>KOG3347|consensus
Probab=94.61 E-value=0.15 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.0
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.-|+..|-||.||||+|.+||.-++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC
Confidence 4578899999999999999998773
No 205
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.56 E-value=0.21 Score=44.70 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=26.2
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
+++.|-||+|||+++..++..+...+..+-.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6789999999999999999988654444444433
No 206
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.73 Score=44.60 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....+|++-|.-|.||||||+.|+..|+
T Consensus 2 ~~~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 2 NVAMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CcccEEEEecccccCHHHHHHHHHHHhC
Confidence 3567899999999999999999999995
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.11 Score=52.01 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.5
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
|....-=+++.|-||+|||+||.+|+..+.-.|.++-.+++.
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 666777899999999999999999999997556666665543
No 208
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.28 E-value=0.28 Score=49.95 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=25.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
+|+++|.+|+|||++|..|++.++ ..++++|
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~-----~~iis~D 31 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN-----AEIISVD 31 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-----CcEEEec
Confidence 479999999999999999999884 3455554
No 209
>PRK05439 pantothenate kinase; Provisional
Probab=94.18 E-value=0.044 Score=56.31 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=34.6
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc--CCcceeeccch
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL--GLNVRLFNLGD 73 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~--~~~~~~~~~~~ 73 (512)
..+.|.+|.+.|-||+||||+|+.|+..|+.. +..+.++..+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~Dd 126 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDG 126 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccc
Confidence 56788999999999999999999999988632 45566665553
No 210
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.17 E-value=0.04 Score=58.10 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=40.8
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCC-CCCChHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDF-FRSDNEYALSIRD 101 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~-f~~~~~~~~~~r~ 101 (512)
|+..+.+|-++|++|+||||++.+|.+.|+-. +++. ..+ +. .|+| |+..+..+..+|+
T Consensus 1 ~~~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~-----~ik--~~-----~~~~~~d~~~~d~~~~~~ 59 (369)
T PRK14490 1 MLFHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVG-----YYK--HG-----CHRFDIDREGKDSDLARK 59 (369)
T ss_pred CCCCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEE-----EEE--eC-----CCCCCCCcccchHHHHHh
Confidence 67788999999999999999999999998654 4333 332 11 1333 5666666666665
No 211
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.17 E-value=0.25 Score=52.13 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+++++|..|+||||++.+|+.++...|.++.++++|.+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 467899999999999999999999887667778888888887
No 212
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.13 E-value=0.44 Score=44.37 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=25.5
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
+++.|-||+|||++|.+++...-..|.++-.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6789999999999999998765444555544444
No 213
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=94.04 E-value=1.3 Score=42.81 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=34.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
++++.|-+|.||||++..++.++.-.|.++-+++.|..+
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 378999999999999999999999889899888887555
No 214
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.93 E-value=0.054 Score=54.96 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=37.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc-C-Ccceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL-G-LNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~-~~~~~~~~~~~r 75 (512)
...+.+|+++|-+|+||||++.+|+.++... | .++.++..+.+|
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3456789999999999999999999999765 4 788888888877
No 215
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.91 E-value=0.93 Score=46.80 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..|.+|.+||-.|+||||-.-+||.||...|.++-+-..|.-|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 4589999999999999999999999998888766655555555
No 216
>KOG0744|consensus
Probab=93.90 E-value=0.082 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..-+|.+.|-||+|||+++++||..|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 356899999999999999999999983
No 217
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.85 E-value=0.034 Score=53.02 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=25.0
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
+|.+.|.||+||||+|+.|+..+. ++.+++.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~D 32 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQD 32 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccc
Confidence 477889999999999999999873 24445444
No 218
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.86 Score=44.19 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=28.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
...|++=|.=|+||||.++.|.++|...|+++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v 34 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKV 34 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 46789999999999999999999998877644
No 219
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.80 E-value=0.44 Score=52.97 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHH-----
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIR----- 100 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r----- 100 (512)
.....+..||-+|+||||+++-|.+++... |.+.+-++....|+..+- .+...-.|+..=.+...+-
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~-V~Qd~~LF~~TI~~NI~~g~~~at 431 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI-VSQDPLLFSGTIRENIALGRPDAT 431 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE-EcccceeecccHHHHHhcCCCCCC
Confidence 345567799999999999999999999752 445555666677777664 2233444664212111111
Q ss_pred -HHHHHHHHH-HHHHHHhc--CCCCCCCcccccccCCCCCCCCCcccCCC-HHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy673 101 -DQIALQALE-DLDDWIIK--GGHFPQLGDYRRRHASGSRATHDFFRSDN-EYALSIRDQIALQALEDLDDWIIKGGQVA 175 (512)
Q Consensus 101 -~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fd~~n-~~~~~~r~~~a~~~l~~~~~~l~~~g~~~ 175 (512)
+++..++-. .+.+|+.+ +|=--.+| -...| +-+.++|-.+|...+++ -.+.
T Consensus 432 ~eei~~a~k~a~~~d~I~~lp~g~dt~vg----------------e~G~~LSgGQrQrlaiARall~~--------~~IL 487 (567)
T COG1132 432 DEEIEEALKLANAHEFIANLPDGYDTIVG----------------ERGVNLSGGQRQRLAIARALLRN--------PPIL 487 (567)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccceec----------------CCCccCCHHHHHHHHHHHHHhcC--------CCEE
Confidence 222222221 35677632 10000000 00111 33567777777776666 6888
Q ss_pred EEcC--CChhHHHHHHHHHHHHhhcCceEEEE
Q psy673 176 FFDA--TNSTQARRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 176 i~Da--tn~~~~~R~~~~~~~~~~~~~~~~~~ 205 (512)
|+|- .+...+.-+.|.+.+.+...-++.++
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 8886 34444444555553322222245555
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=93.72 E-value=0.6 Score=45.72 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=27.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
-.++++|-||+|||++++.++..+...+.++..+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~ 73 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYI 73 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEe
Confidence 3689999999999999999999886655544433
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.68 E-value=0.045 Score=47.06 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=28.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
+..++++|-||+|||++++.|+..+...+.....++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence 3468899999999999999999999775433333333
No 222
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.60 E-value=0.048 Score=54.76 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=34.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
+|.+.|.+|+||||++++|...++..|..+.++.-|.+.|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 3678999999999999999999988887788887777765
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.53 E-value=0.45 Score=45.50 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...++.++|-||+|||+++.+++.....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3578899999999999999999876643
No 224
>PRK13976 thymidylate kinase; Provisional
Probab=93.48 E-value=0.3 Score=47.30 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
..|++-|.-|+||||+++.|+.+|...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999754
No 225
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.48 E-value=0.068 Score=55.51 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=39.5
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+.+|-++|.||+||||++..|..+++..|.++-++..|..-
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 467789999999999999999999999999888888888877543
No 226
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.41 E-value=0.076 Score=51.98 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=32.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCccee-eccc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL-FNLG 72 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~-~~~~ 72 (512)
.+.+.+|.+.|-+|+||||+++.|+..++..+....+ +..+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 3668999999999999999999999999876554444 4433
No 227
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.27 E-value=0.18 Score=51.09 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=44.4
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
|...+.+.+|=+.|-||.||||+.-+|.+.|.-.|++.-|+.+|....+..|
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGG 96 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGG 96 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCc
Confidence 4467888999999999999999999999999999999999988876644443
No 228
>PRK06526 transposase; Provisional
Probab=93.22 E-value=0.29 Score=48.95 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=29.3
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
..|...+--++++|-||+|||++|..|+..+.-.|.
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~ 127 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGH 127 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCC
Confidence 457777778999999999999999999987744343
No 229
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.18 E-value=0.67 Score=41.18 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCC
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDD 211 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d 211 (512)
..+-+.++|+++.-......+.+ .+...+.+++||=.-|+.
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~Dl 123 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILE-LLKKSKTPVILVLNKIDL 123 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHH-HHHHhCCCEEEEEEchhc
Confidence 34678899999873333344555 456667888888777764
No 230
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.18 E-value=0.08 Score=49.32 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.+++.+|.||+||||+.+.+.+-+ +.-.++|.|..-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~M 40 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDLM 40 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHHH
Confidence 5789999999999999999988877 455677887654
No 231
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.18 E-value=0.63 Score=51.87 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+..+|-.|+||||+++-|++.+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 3457899999999999999999998864
No 232
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.17 E-value=0.06 Score=52.58 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEecCCCCCCchhhhhHHHHhhh--cCCcceeeccc
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRW--LGLNVRLFNLG 72 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~--~~~~~~~~~~~ 72 (512)
|-+.|-+|+||||+|+.|+..|+. .+..+.+++.+
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 667899999999999999999974 33445555444
No 233
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.15 E-value=0.55 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...++.+.|-||+|||++|.+++.....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3578899999999999999999987744
No 234
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.72 Score=47.81 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+.++|.+|+||||+++.|+..+..
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 34468899999999999999999998754
No 235
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.11 E-value=0.56 Score=52.38 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=76.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCC-------cceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGL-------NVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIAL 105 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~-------~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~ 105 (512)
...-.+.+||-+|+||||+++-|++.+..... +..-++....|+...- .+....+|+. ++|+++..
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~lf~~------ti~~Ni~~ 436 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV-VSQRVHLFSA------TLRDNLLL 436 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE-Ecccchhhcc------cHHHHhhc
Confidence 34568899999999999999999998864322 2222233344433222 2223344553 33333322
Q ss_pred -----------HHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCccc--CCCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy673 106 -----------QALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFR--SDNEYALSIRDQIALQALEDLDDWIIK 170 (512)
Q Consensus 106 -----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd--~~n~~~~~~r~~~a~~~l~~~~~~l~~ 170 (512)
.+++ .+.+|+.+ | . ..+..+-+ ..-+-+.++|-.+|...+.+
T Consensus 437 ~~~~~~~~~i~~al~~~~l~~~i~~----p----------~--GldT~vge~g~~LSgGqrqRialARall~~------- 493 (574)
T PRK11160 437 AAPNASDEALIEVLQQVGLEKLLED----D----------K--GLNAWLGEGGRQLSGGEQRRLGIARALLHD------- 493 (574)
T ss_pred CCCccCHHHHHHHHHHcCCHHHHcC----c----------c--ccCchhcCCCCCCCHHHHHHHHHHHHHhcC-------
Confidence 2222 23444421 0 0 01100101 11244667888888777777
Q ss_pred CCcEEEEcCC--ChhHHHHHHHHHHHHhhcCceEEEE
Q psy673 171 GGQVAFFDAT--NSTQARRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 171 ~g~~~i~Dat--n~~~~~R~~~~~~~~~~~~~~~~~~ 205 (512)
..+.|+|-. +...+.++.+.+.+.+...-+.+++
T Consensus 494 -~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 494 -APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred -CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999984 4456666777774433333344444
No 236
>KOG0738|consensus
Probab=93.02 E-value=1.6 Score=45.99 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=25.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
-|+|+|-||+|||-||++++.-- ++-.||+.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVS 277 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVS 277 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEec
Confidence 58999999999999999999877 35556654
No 237
>KOG4622|consensus
Probab=93.01 E-value=0.61 Score=44.51 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=39.7
Q ss_pred HcCCcEEEEcCCChhHHHHHHHHHHHHhhcCce--EEEEEEEeCCHHHHHHHHHH
Q psy673 169 IKGGQVAFFDATNSTQARRNTIHHKIVEERQYM--LFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 169 ~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~--~~~~e~~~~d~~~~~~n~~~ 221 (512)
++|-.+.++|+.|--+..|-.+.+ +++.+|+. .+|+-+.-+ +.+++|-.|
T Consensus 91 nsgrhiilcdD~FY~kSMR~k~~k-i~kd~GciFG~Iflas~id--e~LqaNS~R 142 (291)
T KOG4622|consen 91 NSGRHIILCDDIFYLKSMRHKFQK-IAKDHGCIFGIIFLASGID--EALQANSHR 142 (291)
T ss_pred CCCceEEEechHHHHHHhhhHHHH-HHHHcCCeeeeeehhhhHH--HHHHhcccc
Confidence 455678899999999999999999 89999954 577766554 677777654
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.01 E-value=0.076 Score=50.12 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..|...+.-+++.|-||+|||++|..++..+-..|..+..++..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 45777788899999999999999999999887677766655544
No 239
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.01 E-value=0.23 Score=51.83 Aligned_cols=150 Identities=14% Similarity=0.211 Sum_probs=79.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCC-----cceeeccchhhhhhcccCCCCCCCCCC----Ch-HHHHHHHHHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGL-----NVRLFNLGDYRRRHASISSATHDFFRS----DN-EYALSIRDQIAL 105 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~-----~~~~~~~~~~rr~~~~~~~~~~~~f~~----~~-~~~~~~r~~~~~ 105 (512)
-.+.+.|-+|+||||+-+.||-+-.-.+. +.++.++..++|...- .-....+|.+ +| ..++++|.....
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~-VFQ~YALFPHltV~~NVafGLk~~~~~~~ 110 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM-VFQSYALFPHMTVEENVAFGLKVRKKLKK 110 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce-eecCcccCCCCcHHHHhhhhhhhcCCCCH
Confidence 56789999999999999999988753222 3455556666665433 1122344666 33 333442221111
Q ss_pred H----HHHHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy673 106 Q----ALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATN 181 (512)
Q Consensus 106 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn 181 (512)
+ -.+++.+-+. ++.+..-.|.+ -+-+.++|-.+|.....+ -.+..+|-..
T Consensus 111 ~~i~~rv~e~L~lV~----L~~~~~R~p~q--------------LSGGQqQRVALARAL~~~--------P~vLLLDEPl 164 (352)
T COG3842 111 AEIKARVEEALELVG----LEGFADRKPHQ--------------LSGGQQQRVALARALVPE--------PKVLLLDEPL 164 (352)
T ss_pred HHHHHHHHHHHHHcC----chhhhhhChhh--------------hChHHHHHHHHHHHhhcC--------cchhhhcCcc
Confidence 1 1112222220 00011112222 222556777776655555 6677888765
Q ss_pred hhH------HHHHHHHHHHHhhcCceEEEEEEEeCCHHHH
Q psy673 182 STQ------ARRNTIHHKIVEERQYMLFFVESLCDDPDIL 215 (512)
Q Consensus 182 ~~~------~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~ 215 (512)
+.. +.|.++.+ +.++.|+.++|| +-|-++.+
T Consensus 165 SaLD~kLR~~mr~Elk~-lq~~~giT~i~V--THDqeEAl 201 (352)
T COG3842 165 SALDAKLREQMRKELKE-LQRELGITFVYV--THDQEEAL 201 (352)
T ss_pred cchhHHHHHHHHHHHHH-HHHhcCCeEEEE--ECCHHHHh
Confidence 543 34555555 667777776665 55554444
No 240
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.97 E-value=0.12 Score=46.55 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.1
Q ss_pred EEEecCCCCCCchhhhhHHH
Q psy673 38 VAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~ 57 (512)
|+++|.+++|||++..+++.
T Consensus 2 i~iiG~~~~GKssli~~~~~ 21 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKL 21 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999988874
No 241
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.94 E-value=0.053 Score=53.68 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=28.0
Q ss_pred EecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 40 MVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 40 ~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+|-||+||||+++.+.+|+...|.++-++|.|..-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 479999999999999999999999899999988554
No 242
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.94 E-value=0.67 Score=51.29 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+..+|-+|+||||+++.|+..+..
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4568899999999999999999998854
No 243
>PLN02165 adenylate isopentenyltransferase
Probab=92.93 E-value=0.22 Score=51.60 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+.+|+++|-+|+|||++|..|+..+++ .++++|.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~-----eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS-----EIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC-----ceecCCh
Confidence 448999999999999999999999864 4555553
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.88 E-value=2 Score=46.20 Aligned_cols=41 Identities=34% Similarity=0.414 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh--hcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR--WLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~--~~~~~~~~~~~~~~r 75 (512)
.-+++++|-+|+||||++.+||.++. .-|.++-++..+.+|
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 34889999999999999999998886 335677788887777
No 245
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.83 E-value=0.55 Score=51.71 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+..||-+|+||||+++-|++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567899999999999999999998864
No 246
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.76 E-value=0.78 Score=51.20 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcC------CcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHH-----H
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLG------LNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIR-----D 101 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~------~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r-----~ 101 (512)
.....+..||-+|+||||+++-|++++..-| .+.+-++....|+..+- .+....+|+..=.+...+- +
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~-v~Q~~~LF~~TI~eNI~~g~~~~~~ 452 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW-VGQNPQLPHGTLRDNVLLGNPDASD 452 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEE-ecCCCcCCCcCHHHHhhcCCCCCCH
Confidence 3456889999999999999999999873222 12222223344443332 2333445654222221110 0
Q ss_pred HHHHHHHH--HHHHHHhc--CCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy673 102 QIALQALE--DLDDWIIK--GGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFF 177 (512)
Q Consensus 102 ~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~ 177 (512)
+-...+++ .+.+|+.. +|---.+| --...=+-+.++|-.+|+..+.+ -.+.|+
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vg---------------e~G~~LSGGQrQRialARAll~~--------~~IliL 509 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIG---------------DQAAGLSVGQAQRLALARALLQP--------CQLLLL 509 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccc---------------cCCCCCCHHHHHHHHHHHHHhcC--------CCEEEE
Confidence 11111222 34556621 11000000 00011234667888888877777 899999
Q ss_pred cCCC--hhHHHHHHHHHHHH
Q psy673 178 DATN--STQARRNTIHHKIV 195 (512)
Q Consensus 178 Datn--~~~~~R~~~~~~~~ 195 (512)
|-.. ...+-.+.|.+.+.
T Consensus 510 DE~TSaLD~~te~~i~~~l~ 529 (588)
T PRK11174 510 DEPTASLDAHSEQLVMQALN 529 (588)
T ss_pred eCCccCCCHHHHHHHHHHHH
Confidence 9844 44555556666333
No 247
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.71 E-value=0.079 Score=48.88 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=28.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
+|.++|.+|+||||++.+|...|+..|+++-++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 367899999999999999999998877766555
No 248
>PHA00729 NTP-binding motif containing protein
Probab=92.69 E-value=0.084 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.8
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.-|++.|-||+||||+|.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.68 E-value=0.083 Score=47.07 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
|+++|-||+|||++|+.|+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999983
No 250
>PLN02796 D-glycerate 3-kinase
Probab=92.67 E-value=0.093 Score=54.58 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..|++|.++|-+|+||||+++.|+..+...+..+..+..+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiD 137 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEEC
Confidence 3578999999999999999999999997655555444443
No 251
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.64 E-value=0.27 Score=46.18 Aligned_cols=66 Identities=15% Similarity=0.345 Sum_probs=39.9
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHh
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQ 251 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~ 251 (512)
|.++|+|.. ... +.. .+..+...++|=+.+++.+.+++.++++. .+..+...+|+...++.
T Consensus 93 gk~~il~~~-~~g-----~~~--L~~~~~~~~~IfI~~~s~~~l~~~l~~r~-----------~~~~~~i~~r~~~~~~~ 153 (183)
T PF00625_consen 93 GKHCILDVD-PEG-----VKQ--LKKAGFNPIVIFIKPPSPEVLKRRLRRRG-----------DESEEEIEERLERAEKE 153 (183)
T ss_dssp TTEEEEEET-HHH-----HHH--HHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------HCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcc-HHH-----HHH--HHhcccCceEEEEEccchHHHHHHHhccc-----------cccHHHHHHHHHHHHHH
Confidence 889999976 222 222 33336666666667787788887765421 12345567777777776
Q ss_pred ceecc
Q psy673 252 YQTLT 256 (512)
Q Consensus 252 yepl~ 256 (512)
++-..
T Consensus 154 ~~~~~ 158 (183)
T PF00625_consen 154 FEHYN 158 (183)
T ss_dssp HGGGG
T ss_pred HhHhh
Confidence 66443
No 252
>PRK09183 transposase/IS protein; Provisional
Probab=92.59 E-value=0.58 Score=46.88 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=30.6
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
..|......++++|-||+|||++|..|+..+...|..+..+
T Consensus 96 ~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 96 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34555666788999999999999999987765555444433
No 253
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.47 E-value=0.89 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.402 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
.|..++++|.||+||||+|+.|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 46789999999999999998885
No 254
>KOG3720|consensus
Probab=92.42 E-value=0.18 Score=53.89 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=47.3
Q ss_pred EEEEeccccccc-----ccccc-----c-CCCCCCCHHHHHHHHHhhhhhhh---c---------CCCCcEEEeCcHHHH
Q psy673 298 TVYLTRPGESIN-----NVQAI-----L-GGDSDLTAGGQEYSKCLSDFVSE---K---------NLSDLRIWTSSKEAA 354 (512)
Q Consensus 298 ~I~LVRHGes~~-----n~~~~-----~-~gD~pLTe~G~~qA~~l~~~L~~---~---------~~~~~~V~tSpl~Ra 354 (512)
.-.+-|||...- ..... + .|--.||+.|.+|+..||++|++ . +.+...+.||+..||
T Consensus 37 v~~i~RHGdRaP~~~~yp~dp~~~~~~~~~G~GqLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~nRt 116 (411)
T KOG3720|consen 37 VQVIFRHGDRAPVDTPYPLDPFKEEDFWPRGWGQLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDVNRT 116 (411)
T ss_pred EEEEeecCCCCcccCCCCCCcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHhhccccCCcccCcceEEEecCCccHH
Confidence 344669997641 11111 1 22456999999999999999987 2 123567889999999
Q ss_pred HHHHhHccc
Q psy673 355 KQTVAQCPG 363 (512)
Q Consensus 355 iqTA~~i~~ 363 (512)
+.||+....
T Consensus 117 l~SAqs~la 125 (411)
T KOG3720|consen 117 LMSAQSVLA 125 (411)
T ss_pred HHHHHHHHH
Confidence 999998754
No 255
>PF05729 NACHT: NACHT domain
Probab=92.40 E-value=0.092 Score=47.48 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+++++|-||+|||+++++++..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 5789999999999999999988754
No 256
>PRK07933 thymidylate kinase; Validated
Probab=92.38 E-value=0.11 Score=50.55 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=29.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
+.|++-|.-|+||||+++.|+.+|++.|.++...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3689999999999999999999999887655433
No 257
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.35 E-value=0.11 Score=48.09 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=29.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
+|.++|.+++||||++.+|.+.|...|++..++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 68899999999999999999999887776655543
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.34 E-value=2.2 Score=41.98 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
..-.+++.|-||+|||++++.++..+...|.++..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 335789999999999999999999876544444333
No 259
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.33 E-value=0.86 Score=50.19 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcC-------CcceeeccchhhhhhcccCCCCCCCCCCChHHHHHH-----H
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLG-------LNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSI-----R 100 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~-------~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~-----r 100 (512)
...-.+..+|-+|+||||+.+-|++.+.... .+..-++....|+..+- -+....+|+..=.+...+ -
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~-v~Q~~~lf~~ti~~Ni~~~~~~~~ 424 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW-VPQHPFLFAGTIAENIRLARPDAS 424 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE-EcCCCcccCcCHHHHHhccCCCCC
Confidence 3456889999999999999999999886432 22222233344443332 223344565422222221 1
Q ss_pred HHHHHHHHH--HHHHHHhc-CCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy673 101 DQIALQALE--DLDDWIIK-GGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFF 177 (512)
Q Consensus 101 ~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~ 177 (512)
++-...+++ .+.+|+.+ ...+- +.. | --...-+-+.++|-.+|+..+++ .++.|+
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gld----t~v----~------e~g~~LSgGq~qri~laRal~~~--------~~ilil 482 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLD----TLI----G------EGGAGLSGGQAQRLALARAFLRD--------APLLLL 482 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccc----chh----c------cccccCCHHHHHHHHHHHHHhcC--------CCEEEE
Confidence 111222222 24555521 00000 000 0 00011233667777777776666 899999
Q ss_pred cCCC--hhHHHHHHHHHHH
Q psy673 178 DATN--STQARRNTIHHKI 194 (512)
Q Consensus 178 Datn--~~~~~R~~~~~~~ 194 (512)
|-.. ...+..+.+.+.+
T Consensus 483 DE~ts~lD~~~~~~i~~~l 501 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEAL 501 (529)
T ss_pred eCcccccCHHHHHHHHHHH
Confidence 9844 4445555666633
No 260
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.24 E-value=0.57 Score=53.50 Aligned_cols=130 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHH--
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIAL-- 105 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~-- 105 (512)
.-.+.+||-+|+||||+++-|++.+... |.+.+.++....|+...- .+....+|+. ++|+++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~-v~Q~~~lf~~------TI~eNi~~~~ 563 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY-VPQDPRLFYG------TLRDNIALGA 563 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE-ECCChhhhhh------hHHHHHhCCC
Confidence 4578999999999999999999887532 233333444455555443 2222344542 33333331
Q ss_pred ---------HHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCccc-CC-CHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy673 106 ---------QALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFR-SD-NEYALSIRDQIALQALEDLDDWIIKGG 172 (512)
Q Consensus 106 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd-~~-n~~~~~~r~~~a~~~l~~~~~~l~~~g 172 (512)
.+++ .+.+|+.. +|. +....+-+ .. =+-+.++|-.+|+..+.+ .
T Consensus 564 ~~~~~~~i~~a~~~~~l~~~i~~---lp~------------gl~T~i~e~G~~LSgGQrQRlalARall~~--------p 620 (694)
T TIGR03375 564 PYADDEEILRAAELAGVTEFVRR---HPD------------GLDMQIGERGRSLSGGQRQAVALARALLRD--------P 620 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHh---Ccc------------cccceecCCCCCCCHHHHHHHHHHHHHhcC--------C
Confidence 1222 24555521 110 00000101 11 233567777777776666 8
Q ss_pred cEEEEcCC--ChhHHHHHHHHHHH
Q psy673 173 QVAFFDAT--NSTQARRNTIHHKI 194 (512)
Q Consensus 173 ~~~i~Dat--n~~~~~R~~~~~~~ 194 (512)
.+.|+|-. +...+..+.|.+.+
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHH
Confidence 99999974 55666667777743
No 261
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.23 E-value=0.85 Score=52.00 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=76.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHH-
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIA- 104 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~- 104 (512)
...-.+.+||-+|+||||+++-|++.+.-. |.+.+-++....|+..+- .+....+|+. ++|+|+.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~-v~Q~~~lf~g------TI~eNi~~ 549 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV-VLQNGRLMSG------SIFENIAG 549 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE-EccCCccCcc------cHHHHHhc
Confidence 345678999999999999999999987532 333444445556655433 2333455654 2333332
Q ss_pred ---------HHHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCccc--CCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy673 105 ---------LQALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFR--SDNEYALSIRDQIALQALEDLDDWIIKG 171 (512)
Q Consensus 105 ---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd--~~n~~~~~~r~~~a~~~l~~~~~~l~~~ 171 (512)
..+++ .+.+|+.+ .| . .....+-+ ..=+-+.++|-.+|+..+.+
T Consensus 550 ~~~~~~e~i~~al~~a~l~~~i~~---lp----------~--G~dt~ige~G~~LSGGQrQRialARAll~~-------- 606 (686)
T TIGR03797 550 GAPLTLDEAWEAARMAGLAEDIRA---MP----------M--GMHTVISEGGGTLSGGQRQRLLIARALVRK-------- 606 (686)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHh---cc----------c--cccccccCCCCCCCHHHHHHHHHHHHHhcC--------
Confidence 22232 24555521 00 0 00000001 11244667787787777776
Q ss_pred CcEEEEcCCC--hhHHHHHHHHHHHHhhcC
Q psy673 172 GQVAFFDATN--STQARRNTIHHKIVEERQ 199 (512)
Q Consensus 172 g~~~i~Datn--~~~~~R~~~~~~~~~~~~ 199 (512)
..+.|+|-.. ...+..+.+.+ ...+.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~-~L~~~~ 635 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSE-SLERLK 635 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHH-HHHHhC
Confidence 8999999844 45555566777 345455
No 262
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.17 E-value=0.15 Score=45.40 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=29.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
...|+++-+.|-||+|||++|+.||+.|=..|.+++
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~ 85 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSP 85 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCC
Confidence 456899999999999999999999998744454443
No 263
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.10 E-value=0.84 Score=45.49 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeecc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNL 71 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~ 71 (512)
...++++.|-||+|||+++.+++..+-.. |.++-.|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45688899999999999999999876433 544444443
No 264
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=92.08 E-value=0.24 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEecCCCCCCchhhhhHHH
Q psy673 38 VAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~ 57 (512)
|+++|++++|||+|.++++.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~ 21 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQG 21 (167)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988874
No 265
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=92.08 E-value=0.33 Score=44.82 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
....|+++|.+++|||++..+|.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHc
Confidence 34679999999999999988875
No 266
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.04 E-value=0.15 Score=52.04 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=31.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc--CCcceeeccc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL--GLNVRLFNLG 72 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~--~~~~~~~~~~ 72 (512)
...|.+|.+.|-+|+||||+|+.|...+... +..+.++..+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4568999999999999999999999888632 2345555544
No 267
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.00 E-value=1 Score=50.32 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcc-------eeeccchhhhhhcccCCCCCCCCCCChHHHHHH----HH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV-------RLFNLGDYRRRHASISSATHDFFRSDNEYALSI----RD 101 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~-------~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~----r~ 101 (512)
...-.+.++|-.|+||||+.+-|++.+....... .-++....|+..+- -+....+|+..=.+...+ .+
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~-v~Q~~~lF~~Ti~~NI~~~~~~~d 443 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM-VQQDPVVLADTFLANVTLGRDISE 443 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE-EccCCccccchHHHHHHhCCCCCH
Confidence 3456789999999999999999999886543222 11122233433322 233345565421111111 11
Q ss_pred HHHHHHHHH--HHHHHhc--CCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy673 102 QIALQALED--LDDWIIK--GGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFF 177 (512)
Q Consensus 102 ~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~ 177 (512)
+-+..+++. +.+|+.. +|--..+| --...-+-+.++|-.+|+..+.+ ..+.|+
T Consensus 444 ~~i~~a~~~~gl~~~i~~lp~Gldt~i~---------------e~g~~LSGGqrQRialARaLl~~--------~~illl 500 (592)
T PRK10790 444 EQVWQALETVQLAELARSLPDGLYTPLG---------------EQGNNLSVGQKQLLALARVLVQT--------PQILIL 500 (592)
T ss_pred HHHHHHHHHcCcHHHHHhcccccccccc---------------CCCCCCCHHHHHHHHHHHHHHhC--------CCEEEE
Confidence 112223322 3555521 11000000 00011233567777787777776 899999
Q ss_pred cCC--ChhHHHHHHHHHHHHhhcCceEEEEEEEe
Q psy673 178 DAT--NSTQARRNTIHHKIVEERQYMLFFVESLC 209 (512)
Q Consensus 178 Dat--n~~~~~R~~~~~~~~~~~~~~~~~~e~~~ 209 (512)
|-. +...+..+.|.+.+.+...-+.+++-+..
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr 534 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHR 534 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 984 45556666677743332233445544433
No 268
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.00 E-value=0.63 Score=54.12 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+-.+++.|-+|.|||++|+.|++.|+
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456789999999999999999999995
No 269
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.99 E-value=1.8 Score=48.86 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.++++|-||.||||+|+.||+.|++
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678899999999999999999999975
No 270
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.97 E-value=0.73 Score=52.74 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=70.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHH--
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIAL-- 105 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~-- 105 (512)
.-.+.++|-+|+||||+++-|++.+... |.+..-++....|+...- .+....+|+. ++|+|+..
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~-v~Q~~~lf~g------TI~eNi~l~~ 572 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY-LPQEPYIFSG------SILENLLLGA 572 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE-EecCceehhH------HHHHHHhccC
Confidence 4578999999999999999999987532 222333334455554332 2233345543 33333332
Q ss_pred ----------HHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCccc-CC-CHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy673 106 ----------QALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFR-SD-NEYALSIRDQIALQALEDLDDWIIKG 171 (512)
Q Consensus 106 ----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd-~~-n~~~~~~r~~~a~~~l~~~~~~l~~~ 171 (512)
.+++ .+.+++.+ +|. .....+-+ .. =+-+.++|-.+|+..+.+
T Consensus 573 ~~~~~~~~i~~a~~~a~l~~~i~~---lp~------------gldt~i~e~G~~LSgGQrQRialARall~~-------- 629 (708)
T TIGR01193 573 KENVSQDEIWAACEIAEIKDDIEN---MPL------------GYQTELSEEGSSISGGQKQRIALARALLTD-------- 629 (708)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHh---ccc------------ccCcEecCCCCCCCHHHHHHHHHHHHHhhC--------
Confidence 1121 23444421 110 00000101 11 234667777777777776
Q ss_pred CcEEEEcCC--ChhHHHHHHHHHHHH
Q psy673 172 GQVAFFDAT--NSTQARRNTIHHKIV 195 (512)
Q Consensus 172 g~~~i~Dat--n~~~~~R~~~~~~~~ 195 (512)
-.+.|+|-. +...+..+.+.+.+.
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHH
Confidence 899999973 445556666777443
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=91.94 E-value=0.91 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+++.|-||+|||++|+.+++.+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 366799999999999999999873
No 272
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.91 E-value=0.72 Score=52.81 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHH-
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIAL- 105 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~- 105 (512)
..-.+.+||-.|+||||+++-|+..+... |.+..-++....|+...- .+....+|+. ++|+++..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~-v~Q~~~lf~g------Ti~eNi~l~ 576 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM-VDQDIFLFEG------TVRDNLTLW 576 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE-EecCChhhhc------cHHHHhhCC
Confidence 34588999999999999999999987532 222222333345554432 2223344543 33333321
Q ss_pred ----------HHHH--HHHHHHhc--CCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy673 106 ----------QALE--DLDDWIIK--GGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKG 171 (512)
Q Consensus 106 ----------~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~ 171 (512)
.+++ .+.+++.+ +|---.+| . -...=+-+.++|-.+|+..+++
T Consensus 577 ~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~-------e--------~G~~LSGGQrQRiaLARall~~-------- 633 (710)
T TIGR03796 577 DPTIPDADLVRACKDAAIHDVITSRPGGYDAELA-------E--------GGANLSGGQRQRLEIARALVRN-------- 633 (710)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec-------c--------CCCCCCHHHHHHHHHHHHHhhC--------
Confidence 1222 23455521 11000000 0 0011233567777777776666
Q ss_pred CcEEEEcCCC--hhHHHHHHHHHHHHhhcCceEE
Q psy673 172 GQVAFFDATN--STQARRNTIHHKIVEERQYMLF 203 (512)
Q Consensus 172 g~~~i~Datn--~~~~~R~~~~~~~~~~~~~~~~ 203 (512)
-.+.|+|-.. ...+..+.+.+. ..+.+.-++
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~-l~~~~~T~I 666 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDN-LRRRGCTCI 666 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHhcCCEEE
Confidence 8999999744 455666777774 444454333
No 273
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.91 E-value=0.09 Score=51.26 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
+.+|.+.|.+|+||||+++.|+..+++.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999988653
No 274
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.91 E-value=0.2 Score=57.16 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=77.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHH------HH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSI------RD 101 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~------r~ 101 (512)
.-.|..||-+|+||||++|-|.+.+.- .|++..-++....||...- -+....+|+-.-.+...+ -+
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~-V~Q~~~Lf~gSI~eNi~l~~p~~~~e 577 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY-VLQDPFLFSGSIRENIALGNPEATDE 577 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE-EcccchhhcCcHHHHHhcCCCCCCHH
Confidence 456899999999999999999998753 3455555666677766543 222234454322222211 11
Q ss_pred HHHHHHHH-HHHHHHhcCCCCCCCcccccccCCCCCCCCCcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy673 102 QIALQALE-DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFF--RSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFD 178 (512)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--d~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~D 178 (512)
++..++.. .+++++.. .| +++...+- .+.=+-+.++|-.+|+..+.+ -.+.|+|
T Consensus 578 ~i~~A~~~ag~~~fI~~---lP------------~gy~t~v~E~G~~LSGGQrQrlalARaLl~~--------P~ILlLD 634 (709)
T COG2274 578 EIIEAAQLAGAHEFIEN---LP------------MGYDTPVGEGGANLSGGQRQRLALARALLSK--------PKILLLD 634 (709)
T ss_pred HHHHHHHHhCcHHHHHh---cc------------cccccccccCCCCCCHHHHHHHHHHHHhccC--------CCEEEEe
Confidence 12222221 23445521 11 01111111 122244667777777766666 8999999
Q ss_pred CC--ChhHHHHHHHHHHHHhhcCceEEEE
Q psy673 179 AT--NSTQARRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 179 at--n~~~~~R~~~~~~~~~~~~~~~~~~ 205 (512)
=. +...+.-+.+.+.+.+-.+-..+++
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~~~T~I~ 663 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQGRTVII 663 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhcCCeEEE
Confidence 53 3333333455563444333343333
No 275
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.89 E-value=0.97 Score=50.52 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCC-------cceeeccchhhhhhcccCCCCCCCCCCChHHHHHH-----HH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGL-------NVRLFNLGDYRRRHASISSATHDFFRSDNEYALSI-----RD 101 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~-------~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~-----r~ 101 (512)
..-.++.+|-+|+||||+++-|+..+..... +..-++....|+...- .+....+|+..=.+...+ .+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~lf~~Ti~~Ni~~~~~~~~d 438 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV-VFQDAGLFNRSIEDNIRVGRPDATD 438 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE-EecCcccccccHHHHHhcCCCCCCH
Confidence 3467899999999999999999988764321 1122222233433222 223334454421211111 01
Q ss_pred HHHHHHHH--HHHHHHhc--CCCCCCCcccccccCCCCCCCCCccc-C-CCHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy673 102 QIALQALE--DLDDWIIK--GGHFPQLGDYRRRHASGSRATHDFFR-S-DNEYALSIRDQIALQALEDLDDWIIKGGQVA 175 (512)
Q Consensus 102 ~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fd-~-~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~ 175 (512)
.-...+++ .+.+|+.. +| +- ..+-+ . .=+-+.++|-.+|+..+.+ ..+.
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~g-ld----------------t~i~~~g~~LSgGq~QRialARall~~--------~~il 493 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDG-YD----------------TVVGERGRQLSGGERQRLAIARALLKD--------PPIL 493 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCccc-cc----------------chhcCCCCCCCHHHHHHHHHHHHHhcC--------CCEE
Confidence 11112222 24566631 11 11 00000 1 1233667887787777676 8999
Q ss_pred EEcC--CChhHHHHHHHHHHHHhhcCceEEEE
Q psy673 176 FFDA--TNSTQARRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 176 i~Da--tn~~~~~R~~~~~~~~~~~~~~~~~~ 205 (512)
|+|- ++.+.+..+.+.+.+.+...-+.+++
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIi 525 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFI 525 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9997 55667777778774433323344443
No 276
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.89 E-value=0.13 Score=41.74 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=27.4
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
++..|.+|+||||++..|++.|...|.++-++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 678899999999999999999987666655443
No 277
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.87 E-value=2.7 Score=47.15 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
-+|+.|-+|+|||+|++.|+.++.-
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999998854
No 278
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.86 E-value=0.12 Score=46.47 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=27.7
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.+....+|++.|..|+||||+++.+++.|++.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999764
No 279
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.86 E-value=0.087 Score=45.24 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
|++.|-||.|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999884
No 280
>PRK08727 hypothetical protein; Validated
Probab=91.86 E-value=3.9 Score=40.12 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=27.7
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
-.+++.|-+|+|||++++.++..+.-.|.++..++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34999999999999999999998865555444443
No 281
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=91.81 E-value=0.29 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.|.++|.|-+||||+-.+|...-
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~ 24 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK 24 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58899999999999999987543
No 282
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.80 E-value=0.16 Score=51.97 Aligned_cols=44 Identities=30% Similarity=0.364 Sum_probs=36.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+.+|.++|.||+||||++..|+..+.-.|.++.++..+...
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45577888889999999999999999998878888888776543
No 283
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.74 E-value=1.8 Score=41.62 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456889999999999999999998775
No 284
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=91.71 E-value=0.94 Score=44.92 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+..++..|--|.|||++|..|+.|+...|.++-++..+..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 5677788999999999999999999877777766655533
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.62 E-value=0.78 Score=42.47 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44568899999999999999999988754
No 286
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.56 E-value=0.15 Score=47.95 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=27.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
+.++.++|.+|+||||++++|.+.|...|+++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~v 37 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRP 37 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence 45789999999999999999999997655543
No 287
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.55 E-value=2.5 Score=42.68 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
-.++++|.+|.||||++..|+..+...+....++..+.+|
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 6899999999999999999998886545556666666554
No 288
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=91.55 E-value=1.2 Score=51.02 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+.+||-.|+||||+++-|++.+.-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4567899999999999999999998854
No 289
>PLN02840 tRNA dimethylallyltransferase
Probab=91.54 E-value=0.34 Score=51.76 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+.+|+++|.+|+|||++|..|++.++.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 3558999999999999999999999854
No 290
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.52 E-value=0.74 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
|.++++-|-||+|||.||-.|+..|
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 5789999999999999999999988
No 291
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.50 E-value=2.5 Score=44.95 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.+++.|-||.||||+|+.+|+.+..
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999999999999965
No 292
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=91.50 E-value=1.1 Score=41.52 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++||||+..+|..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~ 40 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTN 40 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3456889999999999999998875
No 293
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.49 E-value=0.13 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+.++.++|-||+||||+|+.|++.|+-
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999998854
No 294
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=91.46 E-value=0.53 Score=42.39 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=29.2
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCC
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDD 211 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d 211 (512)
.+-+.++|+++........+.. .+...+.+++++=..|+.
T Consensus 86 d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~Dl 125 (174)
T cd01895 86 DVVLLVIDATEGITEQDLRIAG-LILEEGKALVIVVNKWDL 125 (174)
T ss_pred CeEEEEEeCCCCcchhHHHHHH-HHHhcCCCEEEEEecccc
Confidence 4778899998876665556666 566678888888777653
No 295
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.42 E-value=0.78 Score=48.69 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=26.7
Q ss_pred cccCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 30 ~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...+.-....++|-||+|||||++.|+..+...
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 344556677888999999999999999888654
No 296
>PLN02748 tRNA dimethylallyltransferase
Probab=91.41 E-value=0.48 Score=51.42 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
+.+.+|+++|-+|+|||++|..||..+ +..++|+|
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~D 54 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINAD 54 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCc
Confidence 445689999999999999999999988 46777777
No 297
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.41 E-value=0.15 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.|++|.+.|..|+||||+++.|...+...+.++.++..+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiD 249 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSID 249 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEEC
Confidence 589999999999999999999998887656555555544
No 298
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.40 E-value=0.19 Score=43.67 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....++++|-||+|||++++.+++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 456788999999999999999999884
No 299
>PLN02348 phosphoribulokinase
Probab=91.31 E-value=0.18 Score=53.26 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=27.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...+.+|-+.|-+|+||||+|++|+..|+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999999974
No 300
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.25 E-value=0.12 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.0
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.|+..|-||.||||++++|+ .|++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCC
Confidence 368999999999999999999 7755
No 301
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.24 E-value=1.6 Score=48.16 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=34.4
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc--CCcceeeccchhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL--GLNVRLFNLGDYR 75 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~--~~~~~~~~~~~~r 75 (512)
|....-+|.++|.+|+||||++.+|+.++... +.+..++..|.+|
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 55556788999999999999999999876433 3456666666666
No 302
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=2.1 Score=46.62 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+-.++++|-||+||||+|+.|++.|+-
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3556899999999999999999999964
No 303
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.19 E-value=1.1 Score=43.47 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...++.++|.||+|||++|.+++...
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.19 E-value=0.2 Score=48.67 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
...-.++++|-||+|||++|+.++..+...+..+..++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 345678999999999999999999988655555555544
No 305
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=2.5 Score=47.52 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.+++.|-||+|||++|+.|++.|+.
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34668899999999999999999999953
No 306
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.14 E-value=0.89 Score=45.19 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~~ 72 (512)
...++++.|-||.|||++|-+++...-.. +.++-.|+..
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 45689999999999999999999977654 4566656554
No 307
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=91.09 E-value=0.42 Score=44.78 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|++++|||++..++..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc
Confidence 358899999999999999888864
No 308
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.09 E-value=0.35 Score=51.58 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....|+++|-+|+|||||+++|+++++.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999998853
No 309
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=1.7 Score=46.73 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHcCCcEEEEcCCChhHHHHHHHHH-HHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH
Q psy673 166 DWIIKGGQVAFFDATNSTQARRNTIHH-KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYR 244 (512)
Q Consensus 166 ~~l~~~g~~~i~Datn~~~~~R~~~~~-~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R 244 (512)
..++.|..++|.|-.|..-..|..+.. .|+-.-|++++-+-..-.. ++.+--.+|+-..+..-+..-+++......-=
T Consensus 423 ~~~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~-ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~i 501 (758)
T COG5324 423 EEFRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTP-EVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAI 501 (758)
T ss_pred HHhccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCc-ccHHHHHHHHHhccCCccceeeccchHHHHHH
Confidence 334667889999999988888876543 2333446776666444443 34333333333334444444555555555444
Q ss_pred HHHhhHhceeccc
Q psy673 245 IGHYEKQYQTLTE 257 (512)
Q Consensus 245 ~~~~~~~yepl~~ 257 (512)
+.-..+.|.|++.
T Consensus 502 mn~f~k~ykp~~~ 514 (758)
T COG5324 502 MNTFYKQYKPFDA 514 (758)
T ss_pred HHHHHHhcCCCCC
Confidence 6666778999983
No 310
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.06 E-value=2.2 Score=49.71 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.++++|-||+||||+|+.|++.|+.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 34667899999999999999999999954
No 311
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.06 E-value=1.3 Score=49.33 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.++.+|-+|+||||+++.|+..+..
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 34568899999999999999999998753
No 312
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.99 E-value=3.8 Score=41.71 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=24.7
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...|..+++.|-||+|||++|+.+++.++
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 33567888899999999999999999873
No 313
>PRK11519 tyrosine kinase; Provisional
Probab=90.99 E-value=1 Score=51.76 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+++.|....||.||||+|..||..+.-.|.++-++.+|-.+-.+ +.+|...++.+ +.+
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~-------~~~~~~~~~~g--------------l~~ 584 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT-------HELLGTNNVNG--------------LSD 584 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcH-------HHHhCCCCCCC--------------HHH
Confidence 355666666999999999999999999888888888776554211 22233222211 222
Q ss_pred HHhcCCCCCCCcccccccCCCC-CCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGS-RATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
+|.....+. ..+.+....+- -.+++- .+.|+. +.+....+.++++.++..-+.+|+|+.-...-- ...-
T Consensus 585 ~l~~~~~l~--~~i~~~~~~~l~~lp~g~-~~~~~~-----ell~s~~~~~ll~~l~~~yD~ViiDtpP~~~v~--Da~~ 654 (719)
T PRK11519 585 ILIGQGDIT--TAAKPTSIANFDLIPRGQ-VPPNPS-----ELLMSERFAELVNWASKNYDLVLIDTPPILAVT--DAAI 654 (719)
T ss_pred HhCCCCCHH--HhecccCcCCEEEEeCCC-CCCCHH-----HHhhHHHHHHHHHHHHhcCCEEEEeCCCcccch--HHHH
Confidence 221111110 00000000000 000111 122332 123345567777788677999999997654321 1122
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKEV 222 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~ 222 (512)
++...+.-++++..-.+....+..-+++.
T Consensus 655 -l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l 683 (719)
T PRK11519 655 -VGRHVGTTLMVARYAVNTLKEVETSLSRF 683 (719)
T ss_pred -HHHHCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45556777777777777776666665543
No 314
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.98 E-value=5.5 Score=43.07 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
-+++.|-||+|||+|++.++.++...+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~ 158 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhC
Confidence 489999999999999999999886543
No 315
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.97 E-value=1.2 Score=41.83 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.0
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
+.....+++++|-||+|||+++..++-.+
T Consensus 28 ~~~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 28 LLPRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EE-TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999998765
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=90.96 E-value=0.56 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..-.+.++|-+|+||||+++-|++.+.
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446889999999999999999998774
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.96 E-value=0.15 Score=47.75 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.|++.|-||+||||+.+++.+.|...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~ 27 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG 27 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC
Confidence 379999999999999999999996433
No 318
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.94 E-value=4.1 Score=44.09 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
-+++.|-||+|||++++.++..+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 48899999999999999999988654
No 319
>KOG1534|consensus
Probab=90.93 E-value=1.5 Score=42.60 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=36.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+..++..|--|+||||....+-.+...+|-.+.++|.+..-
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 45678899999999999999999999999999999998654
No 320
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.91 E-value=0.16 Score=46.41 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
|.++|.+|+||||++..|+.++...|.+.-++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 67889999999999999999998888888777776543
No 321
>PRK09087 hypothetical protein; Validated
Probab=90.91 E-value=1.1 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
-.++++|-+|+||||+++.++...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999998765
No 322
>KOG0058|consensus
Probab=90.90 E-value=0.3 Score=54.81 Aligned_cols=56 Identities=29% Similarity=0.334 Sum_probs=40.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRS 91 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~ 91 (512)
--.+.+||-+|+||||+|.-|-|++.- .|.+.+-+|.--+|+..+- ....+-+|+-
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~-V~QEPvLFs~ 556 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGL-VGQEPVLFSG 556 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeee-eeccceeecc
Confidence 348899999999999999999999963 3556666777677755443 3333445543
No 323
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=1.6 Score=48.12 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh-------hcCCcceeeccchhhhhhcccCCCCCCCCC
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR-------WLGLNVRLFNLGDYRRRHASISSATHDFFR 90 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~-------~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~ 90 (512)
...-.+++||-+|+||||+...|+-++. |.|...+-++....|+...- -+....+|.
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~-v~Q~p~lf~ 408 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW-VSQNPYLFA 408 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee-eCCCCcccc
Confidence 4457899999999999999999998886 45666666666677776654 233334454
No 324
>PF13173 AAA_14: AAA domain
Probab=90.89 E-value=1.3 Score=38.90 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.++++.|..++||||+++++++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998773
No 325
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.88 E-value=0.19 Score=53.38 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh----cCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW----LGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~----~~~~~~~~~~~~~r 75 (512)
.|.+|+++|-+|+||||.+.+||.++.. .|.+..++..|.+|
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 4679999999999999999999998863 35677788888877
No 326
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.80 E-value=2.3 Score=48.09 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+-.+++.|-+|.||||+|+.+++.|+.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4556899999999999999999999965
No 327
>PRK07004 replicative DNA helicase; Provisional
Probab=90.78 E-value=2.3 Score=46.33 Aligned_cols=55 Identities=22% Similarity=0.449 Sum_probs=36.1
Q ss_pred CCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeeccc
Q psy673 17 GLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNLG 72 (512)
Q Consensus 17 glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~~ 72 (512)
|+| .|+..|-... -.....++++.|-||.|||++|..++.+.-. .|..+-+|+..
T Consensus 195 gi~-TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE 251 (460)
T PRK07004 195 GTP-TGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME 251 (460)
T ss_pred Ccc-CCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 555 4454444332 2334578999999999999999999987643 24444455443
No 328
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.75 E-value=0.17 Score=48.81 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.3
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
+...+..++++|-||+|||++|+.+++++.-.+
T Consensus 34 ~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~ 66 (226)
T TIGR03420 34 AGKGDRFLYLWGESGSGKSHLLQAACAAAEERG 66 (226)
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 345577899999999999999999999875433
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.73 E-value=1 Score=40.75 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|+..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4456788999999999999999988763
No 330
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=90.69 E-value=1.6 Score=45.49 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.++++|-+|+||||+-+.||-...-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3457899999999999999999987753
No 331
>PRK06921 hypothetical protein; Provisional
Probab=90.61 E-value=1.4 Score=44.32 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.--+++.|-||+|||+++.+|+..+.-
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456899999999999999999998754
No 332
>PRK04296 thymidine kinase; Provisional
Probab=90.59 E-value=0.81 Score=43.48 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
.++++.|-||+||||++.+++..+...|.++-+|+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57889999999999999999877755565655553
No 333
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.53 E-value=0.4 Score=44.80 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++.++|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356789999999999999998864
No 334
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.52 E-value=2.4 Score=45.20 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..|.-|++.|-||+|||++|+.++..++
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577889999999999999999999774
No 335
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.49 E-value=2 Score=47.24 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.+++.|-||+||||+|+.+++.|+-
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567999999999999999999999964
No 336
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.42 E-value=3.4 Score=40.13 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-.+.++|-+|+||||+.+.|+..+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 58 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456788999999999999999999988654
No 337
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=90.39 E-value=2 Score=41.40 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678999999999999999999987754
No 338
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.39 E-value=1.6 Score=48.40 Aligned_cols=134 Identities=21% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCC-------cceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHH-
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGL-------NVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIA- 104 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~-------~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~- 104 (512)
...-.++.+|-.|+||||+.+.|+..+..... +..-++...+|+..+- -+....+|+. ++|+++.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~-v~Q~~~lf~~------Ti~~Ni~~ 428 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL-VSQDVVLFND------TIANNIAY 428 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE-EccCcccccc------cHHHHHhc
Confidence 34567899999999999999999998864322 2222222234433222 2233344543 2233222
Q ss_pred -----------HHHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCccc--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy673 105 -----------LQALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFR--SDNEYALSIRDQIALQALEDLDDWII 169 (512)
Q Consensus 105 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd--~~n~~~~~~r~~~a~~~l~~~~~~l~ 169 (512)
..+++ .+.+|+.+ +| . +.+..+-+ ..-+-+.++|-.+|+..+.+
T Consensus 429 ~~~~~~~~~~i~~~l~~~~l~~~i~~---lp----------~--gldt~i~~~g~~LSgGqrQRiaLARall~~------ 487 (571)
T TIGR02203 429 GRTEQADRAEIERALAAAYAQDFVDK---LP----------L--GLDTPIGENGVLLSGGQRQRLAIARALLKD------ 487 (571)
T ss_pred CCCCCCCHHHHHHHHHHcChHHHHHh---Cc----------C--cccceecCCCCcCCHHHHHHHHHHHHHhcC------
Confidence 22232 24556632 10 0 00000111 11244667888887777776
Q ss_pred cCCcEEEEcCC--ChhHHHHHHHHHHHHh
Q psy673 170 KGGQVAFFDAT--NSTQARRNTIHHKIVE 196 (512)
Q Consensus 170 ~~g~~~i~Dat--n~~~~~R~~~~~~~~~ 196 (512)
..+.|+|-. +...+-.+.|.+.+.+
T Consensus 488 --~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 488 --APILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred --CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 899999974 4556666777774433
No 339
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=90.39 E-value=0.28 Score=49.61 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRD 101 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~ 101 (512)
+|.++|.+++|||||+.+|++.|.-.| ++-++- ..+|.||+..++++...|+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK------------hd~h~~~~~~g~Ds~~~~~ 54 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK------------HMDTERLNPDGTDTGRHFD 54 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE------------EcCCCcCCCCCCCcHHHHH
Confidence 588999999999999999999997766 433331 1224455544555555554
No 340
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=90.34 E-value=4.3 Score=40.82 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=32.0
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
...|++|++-|.-|+||..+.++|..+|+--|+++..|
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~ 90 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF 90 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC
Confidence 45799999999999999999999999997666555444
No 341
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.25 E-value=3.8 Score=39.12 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45568899999999999999999987653
No 342
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.25 E-value=0.19 Score=49.89 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
.-+++.|-||+|||++|.+|+.+|...|..+..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 47899999999999999999999976665554443
No 343
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.21 E-value=0.23 Score=49.57 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
...-+++.|-||+|||++|+.+++.+..++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345688999999999999999999885543
No 344
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.18 E-value=4.5 Score=43.03 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=22.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
--+++.|-||+|||++++.++..+.-
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35788999999999999999998854
No 345
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.17 E-value=4.6 Score=39.62 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH-hhhcCCcceeec
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY-LRWLGLNVRLFN 70 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~-l~~~~~~~~~~~ 70 (512)
.....+++.|-||+|||++|.+++.. +. .|-++-.|.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs 56 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVA 56 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEE
Confidence 34688999999999999999987653 42 244444343
No 346
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=90.16 E-value=1.7 Score=46.79 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHhhhhhhhcC-------------CCCcEEEeCcHHHHHHHHhHcc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEKN-------------LSDLRIWTSSKEAAKQTVAQCP 362 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~~-------------~~~~~V~tSpl~RaiqTA~~i~ 362 (512)
.-.||+.|..|-..+|+++++.- .+.+.|++++..||+.||+.+.
T Consensus 70 ~GqLT~~G~~~~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl 127 (436)
T PRK10172 70 LGWLTPRGGELVTLLGHYQRQRLVADGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFL 127 (436)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEeCCchHHHHHHHHHH
Confidence 45699999999999999876431 1235788999999999998764
No 347
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.15 E-value=0.2 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
.-=|+..|-||.||||.|++||+|++..|-
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 345888999999999999999999988664
No 348
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.11 E-value=1.7 Score=49.61 Aligned_cols=135 Identities=23% Similarity=0.293 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-------CCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHH-
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-------GLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIAL- 105 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-------~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~- 105 (512)
..-.+.++|-+|+||||+++-|+..+... |.+..-++....|+...- .+....+|+. ++|+++..
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~-v~q~~~lf~~------ti~eNi~~~ 554 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV-VLQENVLFSR------SIRDNIALC 554 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE-EccCCeehhh------hHHHHHhcC
Confidence 34578999999999999999999987532 223333344445544322 2222344543 33444432
Q ss_pred ----------HHHH--HHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy673 106 ----------QALE--DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQ 173 (512)
Q Consensus 106 ----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~ 173 (512)
.+++ .+.+++.+ +|. .++.. .. --...-+-+.++|-.+|...+.+ ..
T Consensus 555 ~~~~~~~~i~~a~~~~~l~~~i~~---lp~--gl~t~------i~--~~g~~LSgGq~qri~lARall~~--------~~ 613 (694)
T TIGR01846 555 NPGAPFEHVIHAAKLAGAHDFISE---LPQ--GYNTE------VG--EKGANLSGGQRQRIAIARALVGN--------PR 613 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHh---CcC--ccCcE------ec--CCCCCCCHHHHHHHHHHHHHHhC--------CC
Confidence 1111 13444421 110 00000 00 00112244667777777777776 89
Q ss_pred EEEEcCC--ChhHHHHHHHHHHHHhh
Q psy673 174 VAFFDAT--NSTQARRNTIHHKIVEE 197 (512)
Q Consensus 174 ~~i~Dat--n~~~~~R~~~~~~~~~~ 197 (512)
+.|+|-. +.+.+.++.+.+. ..+
T Consensus 614 ililDEpts~LD~~~~~~i~~~-l~~ 638 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRN-MRE 638 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHH-HHH
Confidence 9999984 4466667777774 443
No 349
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.09 E-value=0.17 Score=46.78 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=21.6
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
..+.+..++++|.+|+|||++.+.+.+.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999888643
No 350
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.05 E-value=0.25 Score=44.70 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
+|..||-.++||||+++.|.++|...|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 5788999999999999999999987776554
No 351
>KOG3308|consensus
Probab=90.03 E-value=0.28 Score=47.03 Aligned_cols=42 Identities=29% Similarity=0.554 Sum_probs=30.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEY 95 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~ 95 (512)
++|-+.|-.-+||||||+.|.+++.. +.++ +-.|||.++|+-
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~----~~lI--------------hqDDFyKp~~Ei 46 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPG----CSLI--------------HQDDFYKPENEI 46 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccC----Ceee--------------ccccccCchhhh
Confidence 45667778889999999999999953 2222 236888888763
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=89.99 E-value=2.9 Score=46.98 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=35.2
Q ss_pred EEEEeCCCCCCccc-----------cccccccCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 12 VVAMVGLPAREFSK-----------MAFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 12 ~~~~~glpar~~~~-----------~~~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.|-.|+||..--.+ |..+......-++.++|-.|+||||+.+-|+..+.
T Consensus 65 a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 65 AISIVNLPEELEEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred eEEEeeCchhhccCceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 47889999754332 22222233446889999999999999999998764
No 353
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=89.97 E-value=0.28 Score=48.31 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
+|.++|.+++||||++.+|+++|...|+++-++
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 678999999999999999999998888776655
No 354
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=89.96 E-value=3 Score=40.78 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 44568999999999999999999987753
No 355
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=89.93 E-value=1.2 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
=++|++|-.|+||||+++-|.--.
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 479999999999999999987644
No 356
>PRK05642 DNA replication initiation factor; Validated
Probab=89.92 E-value=3.3 Score=40.67 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=25.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
-.+++.|-+|+|||+|++.++.++.-.+.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~ 77 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAV 77 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 45789999999999999999987754344443
No 357
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=89.92 E-value=1.1 Score=49.83 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+.++|-+|+||||+.+-|++.+..
T Consensus 367 ~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 367 QGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4568899999999999999999997753
No 358
>KOG0055|consensus
Probab=89.91 E-value=0.77 Score=54.72 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=77.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHH------HHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALS------IRD 101 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~------~r~ 101 (512)
..-+.+||-+|+||||+..-|-||+.- .|.+.+-+|....|+.++- .+..+.+|+..=.++.. .-+
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l-VsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL-VSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce-eccCchhhcccHHHHHhccCCCCCHH
Confidence 456789999999999999999999964 2567777888888888876 45667777762222211 112
Q ss_pred HHHHHH-HHHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy673 102 QIALQA-LEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDA 179 (512)
Q Consensus 102 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Da 179 (512)
++..++ +.++++|+.+ +|+=-+|+ .+=...+-+-+.|+|-.+|+..+++ -.+.++|=
T Consensus 1095 eIi~Aak~ANaH~FI~s---LP~GyDT~----------vGerG~QLSGGQKQRIAIARAilRn--------PkILLLDE 1152 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISS---LPQGYDTR----------VGERGVQLSGGQKQRIAIARAILRN--------PKILLLDE 1152 (1228)
T ss_pred HHHHHHHHhhhHHHHhc---CcCcccCc----------cCcccCcCCchHHHHHHHHHHHHcC--------CCeeeeec
Confidence 222222 2357788842 22100000 0112223334678999998888887 78888884
No 359
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.90 E-value=2.5 Score=41.55 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.++++|-+||||||+-.-|+-..+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44568899999999999999888877654
No 360
>PRK05973 replicative DNA helicase; Provisional
Probab=89.83 E-value=0.18 Score=49.83 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
....++++.|-||+|||++|.+++..--..|.++-.|...
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3457899999999999999999998664445555555443
No 361
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.83 E-value=1.3 Score=44.45 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+.+||-+|+||||+++.|.+-+.-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p 65 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP 65 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC
Confidence 3457789999999999999999998753
No 362
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.82 E-value=0.15 Score=45.88 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+|+++|-+|+||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378899999999999999998763
No 363
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.78 E-value=1.1 Score=43.62 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeecc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNL 71 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~ 71 (512)
...++++.|-||+|||+++.+++...-.. |.++-.|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34688999999999999999998766433 444444443
No 364
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.77 E-value=0.14 Score=52.97 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.6
Q ss_pred cccCCCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 30 ~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.|+...--|++.|.||+|||++|+.||..|+|..
T Consensus 59 ~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 59 AGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred HHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3455566799999999999999999999998743
No 365
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.75 E-value=3.3 Score=39.77 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 34568899999999999999999988753
No 366
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=89.75 E-value=2.8 Score=43.54 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|.+|+||||+++.|+..+.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4456789999999999999999998775
No 367
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.72 E-value=0.22 Score=48.30 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.8
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
..|.+=|-.|+||||+|+.||+.|+|..+++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTG 36 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTG 36 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeeccc
Confidence 67888899999999999999999988766443
No 368
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.70 E-value=3.5 Score=40.19 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|.+|+||||+.+.|+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4556899999999999999999998764
No 369
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.70 E-value=2.9 Score=40.61 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|.+|+||||+.+.|+..+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456889999999999999999998764
No 370
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.63 E-value=5.1 Score=44.97 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+-.+++.|-+|.|||++|+.+|+.|+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999999995
No 371
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.63 E-value=1.6 Score=41.66 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....-.+.++|-+|+||||+.+.|+..+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 34567899999999999999999998875
No 372
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.62 E-value=3.6 Score=40.02 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45568899999999999999999988753
No 373
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=89.62 E-value=3.3 Score=39.59 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44568899999999999999999988754
No 374
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=89.61 E-value=3.7 Score=42.52 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....-++.++|-+|+||||+++.|+..+.
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34456889999999999999999999874
No 375
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.59 E-value=4.7 Score=38.63 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=23.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
-++.++|.+|+||||+.+.|+..+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 7889999999999999999998775
No 376
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=0.35 Score=50.24 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.=|++.|.||+|||-+|+++|...+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~A 211 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDA 211 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCc
Confidence 45889999999999999999999987743
No 377
>PRK05636 replicative DNA helicase; Provisional
Probab=89.48 E-value=1.9 Score=47.47 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=35.8
Q ss_pred eCCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeecc
Q psy673 16 VGLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNL 71 (512)
Q Consensus 16 ~glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~ 71 (512)
.|+|- |+..|-.+. -+...-+|++.|-||.|||++|..++....+ .|..+-+|+.
T Consensus 246 ~Gi~T-G~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl 302 (505)
T PRK05636 246 TGIPT-GFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL 302 (505)
T ss_pred Cceec-ChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 35544 455444332 2345678999999999999999999987643 2434444433
No 378
>CHL00181 cbbX CbbX; Provisional
Probab=89.48 E-value=0.3 Score=49.70 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
...+++.|-||+||||+|+.++..+...|+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 456889999999999999999998865544
No 379
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.46 E-value=3.6 Score=39.04 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..-.+.++|.+|+||||+.+.|+..+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446789999999999999999998775
No 380
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.45 E-value=3.1 Score=43.24 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=42.2
Q ss_pred cCCcEEEEcC-CChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHH
Q psy673 170 KGGQVAFFDA-TNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKA 237 (512)
Q Consensus 170 ~~g~~~i~Da-tn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a 237 (512)
.+.+|+|+|. --.+.+--+.+.+ ..++..-.++|| .++++++.+---|+-+ +..=.+...+.+++
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK-~LEEPp~~~~fi-L~t~~~~~ll~TI~SR-c~~~~~~~~~~~~~ 170 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLK-SLEEPSGDTVLL-LISHQPSRLLPTIKSR-CQQQACPLPSNEES 170 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHH-HHhCCCCCeEEE-EEECChhhCcHHHHhh-ceeeeCCCcCHHHH
Confidence 4567888864 5557777788888 688877677777 6777766666666543 33334445555553
No 381
>CHL00195 ycf46 Ycf46; Provisional
Probab=89.44 E-value=0.78 Score=50.24 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|.++|-||+|||.+|+.||..++.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45677999999999999999999998753
No 382
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.44 E-value=0.16 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEecCCCCCCchhhhhHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.|++.|=|++|||||++.|+++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 4889999999999999999988
No 383
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.42 E-value=5 Score=38.35 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|.+|+||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566889999999999999999998764
No 384
>KOG1532|consensus
Probab=89.42 E-value=0.42 Score=48.01 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=35.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
...|.+|+.+|+-|+||||..|+|..++..-.-+.=++|.+..-
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv 59 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV 59 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH
Confidence 45689999999999999999999999997655555667777443
No 385
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=89.38 E-value=1 Score=40.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.5
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
++|.++|-|++|||++..+|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 3688999999999999999874
No 386
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.37 E-value=1.4 Score=41.47 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....-++.++|-.|+||||+.+.|+..+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 345668899999999999999999987743
No 387
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.33 E-value=2 Score=47.29 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.++++|-||+||||+|+.+++.++-
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34567899999999999999999999864
No 388
>PRK08116 hypothetical protein; Validated
Probab=89.32 E-value=0.3 Score=49.22 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.+.-+++.|-||+|||+||..++.++.-.+..+..+++.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345689999999999999999999996656555444443
No 389
>KOG3078|consensus
Probab=89.30 E-value=3.7 Score=40.52 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCce-EEEEEEEeCCHHHHHHHHHHHHhcC------CCCC-------------
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYM-LFFVESLCDDPDILDRNIKEVKLTG------PDYQ------------- 230 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~-~~~~e~~~~d~~~~~~n~~~~~~~~------~dy~------------- 230 (512)
..+..|+|.--.|...=.. +..++.+ -.+|+..|+++.+++|...|+.+.. -+|.
T Consensus 92 ~~~~~ildg~Prt~~qa~~-----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitge 166 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEE-----LLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGE 166 (235)
T ss_pred cccccccCCCCcchHHHHH-----HHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccC
Confidence 3577899987776643222 2333433 4788999999777776665532210 0111
Q ss_pred --CCChhHHHHHHHHHHHHhhHhceecc
Q psy673 231 --GFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 231 --~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
-.+.++...-.+.|++.|.+.-.|+.
T Consensus 167 pL~qr~dD~~e~v~~rL~~y~~~~~pv~ 194 (235)
T KOG3078|consen 167 PLIQREDDKPEVVKKRLKAYKEQTKPVL 194 (235)
T ss_pred hhhcCccccHHHHHHHHHHHhhcchHHH
Confidence 12445566678889999988766664
No 390
>PRK06851 hypothetical protein; Provisional
Probab=89.28 E-value=0.39 Score=50.53 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=31.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.+.++++.|.||+||||+.++|+..+...|.....+
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35678899999999999999999999997667666655
No 391
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.22 E-value=2.2 Score=46.51 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+-.+++.|-||+||||+|+.+++.++
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456689999999999999999999885
No 392
>PRK06620 hypothetical protein; Validated
Probab=89.20 E-value=2.7 Score=40.83 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
-.+++.|-||+|||++++.++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 5689999999999999999887653
No 393
>PLN02772 guanylate kinase
Probab=89.18 E-value=1.9 Score=45.84 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
....|+++|-+|+|||||.++|...+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999998765
No 394
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=89.18 E-value=1.6 Score=41.17 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCchhhhhHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.|+++|.+++|||+|..+|..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 395
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=89.14 E-value=4.2 Score=40.67 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|.+|+||||+.+.|+..+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456899999999999999999998764
No 396
>PRK08760 replicative DNA helicase; Provisional
Probab=89.13 E-value=2.7 Score=45.92 Aligned_cols=56 Identities=20% Similarity=0.381 Sum_probs=36.0
Q ss_pred eCCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeeccc
Q psy673 16 VGLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNLG 72 (512)
Q Consensus 16 ~glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~~ 72 (512)
.|+| .|+..|-.+. -.....+|++.|-||.|||++|-.++...-. .|.++-+|+..
T Consensus 210 ~Gi~-TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 210 TGLP-TGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred Cccc-CCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 4444 3444433322 2344679999999999999999999987643 24444455443
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.13 E-value=1.4 Score=47.02 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.+....+.++|-||+|||++++.|++.+.-.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 4455678999999999999999999987543
No 398
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.12 E-value=4.5 Score=45.68 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.+++.|-||.||||+|+.|++.|+.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44667999999999999999999999976
No 399
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.10 E-value=1.5 Score=40.74 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3456889999999999999999998764
No 400
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.09 E-value=1.9 Score=43.41 Aligned_cols=43 Identities=28% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+.++.|.+|.||||+|..||.-+...|.++-++.++.+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~g 98 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRG 98 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCC
Confidence 4567899999999999999999999999999998888887665
No 401
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=89.09 E-value=8.3 Score=38.02 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=32.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.|++|++-|.-|+||.-+.+.|...|+--|+.+..|
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~ 65 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL 65 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC
Confidence 56799999999999999999999999997766655544
No 402
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.05 E-value=4.3 Score=39.90 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456889999999999999999998763
No 403
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=89.00 E-value=4.1 Score=39.67 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456889999999999999999998775
No 404
>KOG0055|consensus
Probab=89.00 E-value=1.6 Score=52.24 Aligned_cols=122 Identities=22% Similarity=0.245 Sum_probs=76.9
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCCChHHHH------
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYAL------ 97 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~------ 97 (512)
..+....+.+||-+|+||||+.+-|.|+++- -|.+.+.++....|....- ....+-+|+..=.+..
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl-V~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL-VSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe-eeechhhhcccHHHHHhcCCCc
Confidence 3456678999999999999999999999963 3667788888888875543 3334466776333222
Q ss_pred HHHHHHHHHHHH-HHHHHHhc-----CCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy673 98 SIRDQIALQALE-DLDDWIIK-----GGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKG 171 (512)
Q Consensus 98 ~~r~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~ 171 (512)
+-++++..++-. +..+|+.+ +..++ . =.++-+-+.|+|-.+|...+++
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vg---e---------------~g~qLSGGQKQRIAIARalv~~-------- 507 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLVG---E---------------RGVQLSGGQKQRIAIARALVRN-------- 507 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhccccc---C---------------CCCCCChHHHHHHHHHHHHHhC--------
Confidence 223333333322 23444421 11111 0 0122334678999998888887
Q ss_pred CcEEEEcC
Q psy673 172 GQVAFFDA 179 (512)
Q Consensus 172 g~~~i~Da 179 (512)
-.+.++|=
T Consensus 508 P~ILLLDE 515 (1228)
T KOG0055|consen 508 PKILLLDE 515 (1228)
T ss_pred CCEEEecC
Confidence 88999995
No 405
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.99 E-value=4.4 Score=45.82 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.++++|-+|.||||+|+.|++.|+.
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999999999999964
No 406
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=88.98 E-value=0.77 Score=49.19 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHhhhhhhhc----C---------CCCcEEEeCcHHHHHHHHhHcc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEK----N---------LSDLRIWTSSKEAAKQTVAQCP 362 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~----~---------~~~~~V~tSpl~RaiqTA~~i~ 362 (512)
...||.+|..+-..+|+++++. + .....||+++..||++||+.+.
T Consensus 68 ~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl 125 (413)
T PRK10173 68 GGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFI 125 (413)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHH
Confidence 4459999999988888866542 1 1246799999999999998774
No 407
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=88.97 E-value=2.5 Score=42.76 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....-++.++|.+|+||||+.+.|++.+.
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 34566889999999999999999999885
No 408
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.97 E-value=0.39 Score=45.01 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh-hcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR-WLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~~~~~~~~~~~~r 75 (512)
+..++++|-+|+|||++|+.|+++|. --..+..+++...+-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 45789999999999999999999996 333345555665555
No 409
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=88.96 E-value=5.5 Score=38.19 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|+..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3456789999999999999999998764
No 410
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.95 E-value=4.6 Score=38.60 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|..|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567899999999999999999987753
No 411
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.91 E-value=2 Score=42.25 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456889999999999999999998775
No 412
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.90 E-value=4.3 Score=38.79 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=22.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
++.++|.+|+||||+.+.|+..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 889999999999999999998775
No 413
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=88.86 E-value=0.23 Score=45.43 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=26.2
Q ss_pred cccccccCCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 26 MAFYQRTVTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 26 ~~~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
++.+.....+..|+++|.+|+|||++.+.|...
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 344444556788999999999999999999763
No 414
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.85 E-value=1.9 Score=43.18 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+++.|..+-+|.||||+|..||..+...|.++-++..+..+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~ 144 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRD 144 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 45678899999999999999999999998888877777665433
No 415
>KOG0781|consensus
Probab=88.74 E-value=2 Score=46.34 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
-..|.+|++||-.|.||||.-.+||-||--..+
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkf 407 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKF 407 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCc
Confidence 457999999999999999999999999965443
No 416
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.71 E-value=5.5 Score=38.98 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567899999999999999999987754
No 417
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=88.64 E-value=3.2 Score=42.55 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.+.|-+|+||||+-+-||--..-
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCC
Confidence 34567899999999999999999987753
No 418
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=88.56 E-value=5.9 Score=38.31 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 44578999999999999999999988753
No 419
>KOG1384|consensus
Probab=88.55 E-value=3.2 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
..+||..|-.|+|||-||-.||..+ +..++|++.
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf-----~~EIINsDk 40 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRF-----PGEIINSDK 40 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhC-----Cceeecccc
Confidence 4688899999999999999999876 678888873
No 420
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.53 E-value=0.29 Score=49.69 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=25.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
.-+++.|-||+|||++|+.+++.+...|.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999976554
No 421
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=88.50 E-value=1.2 Score=42.38 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..|+++|.+|+||||+..++....-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 7899999999999999999987663
No 422
>PRK10908 cell division protein FtsE; Provisional
Probab=88.49 E-value=6.1 Score=38.06 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4556889999999999999999998775
No 423
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.48 E-value=3.6 Score=39.15 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45568999999999999999999987753
No 424
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=88.47 E-value=0.26 Score=52.63 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.|.-|+++|-||+|||++|+.|+..+++..
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 357899999999999999999999997543
No 425
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=88.46 E-value=1.6 Score=40.20 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|+..+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456888999999999999999998664
No 426
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=88.44 E-value=4.8 Score=39.67 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34568999999999999999999998754
No 427
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.42 E-value=5.2 Score=37.55 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567899999999999999999987753
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.41 E-value=3.4 Score=39.35 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSD 92 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~ 92 (512)
...++++.|-+|.|||||.++|-.-.+ +.+ . -+-..|....|-.+.-+.||-+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~--S--VS~TTR~pR~gEv~G~dY~Fvs~ 56 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRF--S--VSATTRKPRPGEVDGVDYFFVTE 56 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEE--E--EEeccCCCCCCCcCCceeEeCCH
Confidence 357899999999999999999987652 221 1 12245555555334446667643
No 429
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.41 E-value=5.3 Score=38.08 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45568899999999999999999987753
No 430
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=88.39 E-value=6.1 Score=43.29 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=34.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
.+.+++|++-|.-|+||+...++|..+|+--|+++..|..
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~ 76 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR 76 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC
Confidence 6889999999999999999999999999877776655433
No 431
>PRK05595 replicative DNA helicase; Provisional
Probab=88.38 E-value=3.6 Score=44.46 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=36.9
Q ss_pred eCCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeeccc
Q psy673 16 VGLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNLG 72 (512)
Q Consensus 16 ~glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~~ 72 (512)
.|+| .|+..|-.+. -.....+++..|-||.|||++|-.++.+..+ .|.++-.|+..
T Consensus 182 ~gi~-tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 182 TGVA-SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred Cccc-CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3454 4444443332 2345678999999999999999999987643 35555555544
No 432
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.37 E-value=3.8 Score=40.05 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45578899999999999999999987753
No 433
>KOG0737|consensus
Probab=88.30 E-value=0.97 Score=47.16 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=38.9
Q ss_pred EeCCCCCCccccccccccCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 15 MVGLPAREFSKMAFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 15 ~~glpar~~~~~~~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.|-||.|+.-..++..-+..+.-|.+.|-||+|||-+|++++.....
T Consensus 107 ~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 107 LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence 46789998777666555667888999999999999999999987754
No 434
>PRK10646 ADP-binding protein; Provisional
Probab=88.27 E-value=0.4 Score=44.21 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=27.2
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+....+|++.|--|+||||++|.|++.|+.
T Consensus 24 ~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 24 ACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred hCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3455678999999999999999999999975
No 435
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.27 E-value=6.9 Score=45.11 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh-hcC-Ccceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR-WLG-LNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~-~~~~~~~~~~~r 75 (512)
+.+|.+||..|+||||.+.+|+.++. ..| .+.-++..|.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 57899999999999999999998763 333 244455555555
No 436
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=88.25 E-value=4.6 Score=37.36 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=26.1
Q ss_pred CCcEEEEcCCChhHH------HHHHHHHHHHhhcCceEEEEE
Q psy673 171 GGQVAFFDATNSTQA------RRNTIHHKIVEERQYMLFFVE 206 (512)
Q Consensus 171 ~g~~~i~Datn~~~~------~R~~~~~~~~~~~~~~~~~~e 206 (512)
.-..+.+|-+|+... .|++++. .+++.|++++.|-
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs-~~r~agiPtv~VT 192 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFS-EVRAAGIPTVQVT 192 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHH-HHHhcCCCeEEEe
Confidence 377889999988653 5666677 5778899987663
No 437
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.21 E-value=6.1 Score=40.10 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=14.6
Q ss_pred EEEEecCCCCCCchhhhh
Q psy673 37 VVAMVGLPARGKSYMATK 54 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~ 54 (512)
+|+..||+|+|||+..+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~ 20 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRA 20 (284)
T ss_pred EEEEeCCCcCCHHHHHHH
Confidence 688999999999984433
No 438
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=88.18 E-value=4.1 Score=46.41 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCC--ChhHHHHHHHHHHHHhhcCceEEEE
Q psy673 147 EYALSIRDQIALQALEDLDDWIIKGGQVAFFDAT--NSTQARRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 147 ~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Dat--n~~~~~R~~~~~~~~~~~~~~~~~~ 205 (512)
+-+.++|-.+|...+.+ -+++|+|-. +...+.++.+.+ +.++.|..++++
T Consensus 584 SgGqkQRl~iARal~~~--------p~illLDEpts~LD~~~~~~l~~-~l~~~~~tvI~i 635 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHK--------PQFAILDECTSAVSVDVEGYMYR-LCREFGITLFSV 635 (659)
T ss_pred CHHHHHHHHHHHHHHcC--------CCEEEEeCCccCCCHHHHHHHHH-HHHHcCCEEEEE
Confidence 44567777777666666 899999984 455667777888 566666555544
No 439
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.18 E-value=5.9 Score=38.11 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999987653
No 440
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.17 E-value=12 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...+.+.|-||+|||++|.+++...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~ 40 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQG 40 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678889999999999999998653
No 441
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=88.16 E-value=3.3 Score=47.55 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.++++|-+|+||||+|+.|++.|+.
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44667889999999999999999999965
No 442
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=88.13 E-value=5.1 Score=40.82 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567889999999999999999988754
No 443
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.12 E-value=6 Score=43.39 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..|.-+++.|-||+|||++|+.|+..++
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999998763
No 444
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.12 E-value=2.5 Score=44.78 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+.-.-.|+-|-||+||||+|+-|+.+.+.
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~ 74 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNA 74 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCC
Confidence 344456788999999999999999998843
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=88.10 E-value=0.17 Score=45.26 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEecCCCCCCchhhhhHHHHhhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
|++.|.||.|||++|+.||+.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 678999999999999999998853
No 446
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=88.10 E-value=5.4 Score=42.06 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-+++++|.+|+||||+.+.|++.+.-
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 45568899999999999999999998854
No 447
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=88.10 E-value=7.1 Score=37.76 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4556889999999999999999998775
No 448
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=5.8 Score=44.45 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+-.+++.|-+|.|||++|+.|+++++-
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 35667889999999999999999999953
No 449
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=88.08 E-value=1.7 Score=44.61 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc---hhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG---DYRR 76 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~---~~rr 76 (512)
.+.+|+++|-.|+|||.+|-.||+. + ..++|+| .||-
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~-----~eIIsaDS~QvYr~ 42 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-K-----AEIINVDSIQVYKE 42 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-C-----CcEEeccHHHHHCC
Confidence 3458999999999999999999988 2 3788887 4553
No 450
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.94 E-value=1.7 Score=45.85 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.1
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
..+.-..+.++|-||+|||++++.|++.+...
T Consensus 129 PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred ecCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44566788999999999999999999988653
No 451
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=87.93 E-value=6.1 Score=41.18 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-++.++|-.|+||||+.+.|+..+...
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~ 94 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTSPD 94 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 445788999999999999999999987643
No 452
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=87.92 E-value=5.4 Score=41.58 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44567889999999999999999988753
No 453
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.88 E-value=2.7 Score=44.31 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=27.2
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.....+-.+++.|-+|.||+++|..++++|.
T Consensus 35 ~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 35 YRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445577899999999999999999999994
No 454
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=87.86 E-value=2.8 Score=40.65 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+.++|.+|+||||+.+.|+..+.-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678899999999999999999988753
No 455
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=87.86 E-value=3.6 Score=39.64 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 44568899999999999999999987653
No 456
>PRK00089 era GTPase Era; Reviewed
Probab=87.86 E-value=2.2 Score=43.07 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.1
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
-.|.++|.|++||||+...|..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g 27 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVG 27 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999988864
No 457
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=87.82 E-value=7.5 Score=37.85 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 45678899999999999999999987753
No 458
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.76 E-value=5.9 Score=37.81 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45568899999999999999999998753
No 459
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=87.76 E-value=5.4 Score=38.35 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456889999999999999999998775
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.74 E-value=3 Score=41.43 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHH------HHHHHHHHHHhhcCceEEEE
Q psy673 146 NEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQA------RRNTIHHKIVEERQYMLFFV 205 (512)
Q Consensus 146 n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~------~R~~~~~~~~~~~~~~~~~~ 205 (512)
-+=+.++|-.+|...+.+ -.+.++|=.|+.-. ..+.+.+ +.++.+.-++||
T Consensus 131 LSGGMrQRVaiARAL~~~--------P~lLLlDEPFgALDalTR~~lq~~l~~-lw~~~~~TvllV 187 (248)
T COG1116 131 LSGGMRQRVAIARALATR--------PKLLLLDEPFGALDALTREELQDELLR-LWEETRKTVLLV 187 (248)
T ss_pred cChHHHHHHHHHHHHhcC--------CCEEEEcCCcchhhHHHHHHHHHHHHH-HHHhhCCEEEEE
Confidence 334667888887766666 89999999987433 3445555 677777777776
No 461
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=87.72 E-value=2.9 Score=51.98 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.....+.+||-+|+||||+++-|.+++.-
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 34568899999999999999999998864
No 462
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=87.70 E-value=5.8 Score=39.20 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-++.++|.+|+||||+.+.|+..+...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 55 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQ 55 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 445678999999999999999999877643
No 463
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=87.68 E-value=3.1 Score=46.57 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-.+..+|-+|+||||+++-|+..+...
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 388 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPT 388 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCCC
Confidence 345678999999999999999999988643
No 464
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.67 E-value=3 Score=42.30 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.2
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
|...+-.+.+.|.||.|||+.|..|++.|.
T Consensus 20 ~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 20 SGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 555666899999999999999999999884
No 465
>PRK03003 GTP-binding protein Der; Reviewed
Probab=87.66 E-value=1.1 Score=48.80 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCC
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDD 211 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d 211 (512)
..+-+.|+|+++.....-..+.+ .++..+.++++|=--|+.
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~-~l~~~~~piilV~NK~Dl 158 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVAR-VLRRSGKPVILAANKVDD 158 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHH-HHHHcCCCEEEEEECccC
Confidence 35788999999864444456777 577788999988877775
No 466
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.65 E-value=0.51 Score=49.80 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=34.4
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhh-hcC-Ccceeeccchhh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLR-WLG-LNVRLFNLGDYR 75 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~-~~~~~~~~~~~r 75 (512)
|....-+++++|-+|+||||++.+|+..+. ..| .+.-++..+.+|
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 455677999999999999999999997653 334 355666676766
No 467
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.64 E-value=2.8 Score=46.68 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+..+|-+|+||||+++-|++.+.-
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p 367 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44567889999999999999999988753
No 468
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=87.60 E-value=8.8 Score=37.14 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=23.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.-++.++|.+|+||||+.+.|+..+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 33 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPA 33 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578899999999999999999887543
No 469
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=87.60 E-value=8.1 Score=37.38 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999987753
No 470
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=87.54 E-value=15 Score=39.69 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+.-++++|-||+|||++|+.++..++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34667888999999999999999998753
No 471
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.53 E-value=3.8 Score=47.25 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=35.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.+++.|....||.||||+|..||..+...|.++-++..|-.+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~ 572 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 572 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4567777777999999999999999999888888777776544
No 472
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=87.50 E-value=0.33 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
++|+++|+||+||||+|+-+..
T Consensus 1 miI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh
Confidence 3789999999999999888865
No 473
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.48 E-value=5.5 Score=41.14 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+-.++++|-||.|||++|+.+++.|.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999999999984
No 474
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=87.46 E-value=0.32 Score=55.75 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=24.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
.|.+.|-||+||||+|+.|++.|+|..+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~ 30 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYL 30 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 6889999999999999999999977544
No 475
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=87.46 E-value=8.7 Score=36.60 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999988754
No 476
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=87.43 E-value=6.5 Score=38.40 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 44578899999999999999999987653
No 477
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=87.41 E-value=5.2 Score=39.86 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 45678899999999999999999987753
No 478
>PRK06851 hypothetical protein; Provisional
Probab=87.40 E-value=0.54 Score=49.49 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=36.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.+.+.++++.|.||+||||+.++++..+...|+++.++.++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45678899999999999999999999998888888888665
No 479
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=87.39 E-value=9.5 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...-++.++|.+|+||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455788999999999999999999987
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=87.39 E-value=0.44 Score=38.48 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=17.0
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
-++++.|-||+|||+++..++.++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999995555555544
No 481
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=87.37 E-value=0.37 Score=41.19 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEecCCCCCCchhhhhHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.|+++|-+|+|||++.++|+.-
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 482
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=12 Score=37.32 Aligned_cols=151 Identities=14% Similarity=0.178 Sum_probs=91.3
Q ss_pred ccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy673 29 YQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQAL 108 (512)
Q Consensus 29 ~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~ 108 (512)
+...+.+++|++=|.=|.||--..+++.++||--|.+.--|-.
T Consensus 68 ~~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~a------------------------------------- 110 (270)
T COG2326 68 VAETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPA------------------------------------- 110 (270)
T ss_pred HHhcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCC-------------------------------------
Confidence 3457899999999999999999999999988654433322211
Q ss_pred HHHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCC--------
Q psy673 109 EDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDAT-------- 180 (512)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Dat-------- 180 (512)
| +.+ ....-.+......|=.+|.++|||=+
T Consensus 111 -----------------------------------P-t~~------E~~qwY~qRy~~~lPa~GeiviFdRSwYnr~gVe 148 (270)
T COG2326 111 -----------------------------------P-TDR------ERGQWYFQRYVAHLPAAGEIVIFDRSWYNRAGVE 148 (270)
T ss_pred -----------------------------------C-ChH------hhccHHHHHHHHhCCCCCeEEEechhhccccCee
Confidence 1 111 11223344444455334777777642
Q ss_pred ----ChhHHHHHHH------HHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCC----CCCCCChhHHHHHHHHHHH
Q psy673 181 ----NSTQARRNTI------HHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGP----DYQGFEPDKAYEDFMYRIG 246 (512)
Q Consensus 181 ----n~~~~~R~~~------~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~----dy~~~~~~~a~~df~~R~~ 246 (512)
|.|.++=+.+ ++......|+.++-.-..-++++.++|...|+ ++| -++++|.+. +.|-+
T Consensus 149 RVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~--~dP~K~WKlSp~D~~~-----r~~Wd 221 (270)
T COG2326 149 RVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERR--NDPLKQWKLSPMDLES-----RDRWD 221 (270)
T ss_pred eccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHh--cCHHhccCCCHHHHHH-----HHhHH
Confidence 3344311111 22255567999888888889999999998874 334 334444443 33456
Q ss_pred HhhHhceec----ccCCcceEEE
Q psy673 247 HYEKQYQTL----TEDHLSYMQI 265 (512)
Q Consensus 247 ~~~~~yepl----~~~e~~yik~ 265 (512)
.|...|+.+ +.++.+|+.+
T Consensus 222 dYt~A~~em~~~T~T~~APW~vV 244 (270)
T COG2326 222 DYTKAKDEMFARTSTPEAPWYVV 244 (270)
T ss_pred HHHHHHHHHHhccCCCCCCeEEE
Confidence 666666543 3577888765
No 483
>KOG0733|consensus
Probab=87.34 E-value=2.1 Score=47.59 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.|-=|+++|-||+|||.+|++||..|.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 467789999999999999999999984
No 484
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=87.29 E-value=0.43 Score=52.85 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...+.+++++|-||.|||+||+.|++.|.-.
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3456899999999999999999999999754
No 485
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.29 E-value=7.5 Score=38.83 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...++++.|-||+|||++|.+++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999988754
No 486
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=87.27 E-value=5.6 Score=38.89 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=25.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-++.++|-+|+||||+.+.|+..+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPD 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 455688999999999999999999877543
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.26 E-value=3.2 Score=38.69 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456888999999999999999997664
No 488
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=87.19 E-value=6.6 Score=40.66 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+++.|+..+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4456789999999999999999999874
No 489
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.19 E-value=0.35 Score=42.12 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+..++++|-||+|||++++.+++.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 3567899999999999999999997753
No 490
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.16 E-value=5.5 Score=37.90 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+.++|.+|+||||+.+.|+..+.-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999988753
No 491
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.13 E-value=5.8 Score=39.69 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45578999999999999999999988754
No 492
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=87.12 E-value=6.1 Score=41.43 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p 54 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999998754
No 493
>KOG2170|consensus
Probab=87.03 E-value=2.2 Score=43.60 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.0
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
...|+++-+.|-+|+||+|+|+.||+++--.|+++.
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~ 142 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP 142 (344)
T ss_pred CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch
Confidence 456899999999999999999999999976666544
No 494
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=87.01 E-value=0.42 Score=43.05 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..|+++|.|++|||+|..+++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999888774
No 495
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=87.00 E-value=5 Score=37.16 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=27.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.|+.|-+|.||||+|..||..| .++-++..|..+
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 46788999999999999999988 355566665544
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.93 E-value=5.7 Score=43.45 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
....++++.|-||+|||+++.+++...-..|.++-.|...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 3468999999999999999999987654445555444443
No 497
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=86.89 E-value=3.2 Score=38.65 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+.++|.+|+||||+.+.|+..+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34567889999999999999999987654
No 498
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=86.86 E-value=7.8 Score=37.82 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|.+|+||||+.+.|+..+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI 53 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999988753
No 499
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=86.81 E-value=0.41 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.4
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..|+++|.|++|||++.+++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999988874
No 500
>PRK04328 hypothetical protein; Provisional
Probab=86.77 E-value=3.5 Score=40.92 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH-hhhcCCcceeecc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY-LRWLGLNVRLFNL 71 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~-l~~~~~~~~~~~~ 71 (512)
....+.+.|-||+|||++|.+++.. +.. |.++-.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 4688999999999999999997654 433 444444433
Done!