Query psy673
Match_columns 512
No_of_seqs 309 out of 2529
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 1.5E-76 5.1E-81 642.7 43.3 410 31-496 31-449 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 5.8E-74 2E-78 616.2 42.9 409 31-495 35-451 (469)
3 2a6p_A Possible phosphoglycera 100.0 8.4E-35 2.9E-39 279.4 20.1 187 289-481 3-195 (208)
4 1h2e_A Phosphatase, YHFR; hydr 100.0 1.1E-34 3.7E-39 278.3 20.3 183 297-481 2-194 (207)
5 1fzt_A Phosphoglycerate mutase 100.0 9E-35 3.1E-39 279.3 17.1 184 290-474 1-199 (211)
6 3kkk_A Phosphoglycerate mutase 100.0 4.7E-33 1.6E-37 275.2 18.3 183 292-474 7-228 (258)
7 3gp3_A 2,3-bisphosphoglycerate 100.0 6.9E-33 2.3E-37 274.0 18.4 182 293-474 6-226 (257)
8 1e58_A Phosphoglycerate mutase 100.0 7.5E-33 2.6E-37 272.4 18.3 179 296-474 2-219 (249)
9 3hjg_A Putative alpha-ribazole 100.0 1.5E-32 5E-37 264.8 18.0 182 294-481 3-197 (213)
10 3d8h_A Glycolytic phosphoglyce 100.0 1.9E-32 6.6E-37 272.8 19.0 181 295-475 19-238 (267)
11 4emb_A 2,3-bisphosphoglycerate 100.0 1.4E-32 4.9E-37 274.6 18.1 181 295-475 26-245 (274)
12 2hhj_A Bisphosphoglycerate mut 100.0 1.7E-32 5.9E-37 273.1 17.9 179 295-474 2-224 (267)
13 1yfk_A Phosphoglycerate mutase 100.0 3.1E-32 1.1E-36 270.5 18.4 180 295-474 2-222 (262)
14 1qhf_A Protein (phosphoglycera 100.0 3.9E-32 1.3E-36 265.9 18.6 178 297-474 1-217 (240)
15 1rii_A 2,3-bisphosphoglycerate 100.0 2.3E-32 7.7E-37 272.2 16.9 179 296-474 4-219 (265)
16 4eo9_A 2,3-bisphosphoglycerate 100.0 3.9E-32 1.3E-36 270.6 18.4 180 295-474 26-242 (268)
17 1v37_A Phosphoglycerate mutase 100.0 2.1E-32 7.2E-37 256.3 14.1 163 297-478 1-166 (177)
18 2qni_A AGR_C_517P, uncharacter 100.0 9.7E-32 3.3E-36 260.4 18.1 176 290-473 15-198 (219)
19 3r7a_A Phosphoglycerate mutase 100.0 7.1E-31 2.4E-35 256.3 16.8 179 295-481 12-221 (237)
20 3e9c_A ZGC:56074; histidine ph 100.0 4.7E-30 1.6E-34 255.2 15.5 173 295-473 2-226 (265)
21 3dcy_A Regulator protein; OMIM 100.0 7.6E-30 2.6E-34 255.0 16.8 177 291-473 3-248 (275)
22 3f3k_A Uncharacterized protein 100.0 6.8E-30 2.3E-34 253.9 14.4 162 295-456 4-193 (265)
23 3d4i_A STS-2 protein; PGM, 2H- 100.0 1.9E-29 6.4E-34 251.5 13.6 192 292-486 5-258 (273)
24 3c7t_A Ecdysteroid-phosphate p 100.0 7.8E-29 2.7E-33 245.8 15.8 188 295-486 3-248 (263)
25 3mbk_A Ubiquitin-associated an 100.0 3.7E-29 1.3E-33 248.3 12.8 188 297-486 1-249 (264)
26 3mxo_A Serine/threonine-protei 99.9 2.1E-26 7.1E-31 219.5 15.8 165 294-480 8-186 (202)
27 3eoz_A Putative phosphoglycera 99.9 3.6E-26 1.2E-30 220.2 12.1 167 294-481 19-199 (214)
28 1ujc_A Phosphohistidine phosph 99.9 8.3E-23 2.8E-27 188.0 15.5 146 297-481 1-148 (161)
29 2rfl_A Putative phosphohistidi 99.9 2.1E-22 7.3E-27 187.4 10.3 137 296-474 8-152 (173)
30 3fjy_A Probable MUTT1 protein; 99.8 7E-19 2.4E-23 182.4 14.6 159 288-481 174-347 (364)
31 3f2i_A ALR0221 protein; alpha- 99.8 1.4E-18 4.8E-23 161.8 12.2 142 297-473 1-143 (172)
32 4hbz_A Putative phosphohistidi 99.7 2.7E-16 9.3E-21 148.1 10.6 135 295-473 18-165 (186)
33 3zvl_A Bifunctional polynucleo 99.3 2.5E-11 8.6E-16 127.8 14.1 88 172-269 309-397 (416)
34 1ly1_A Polynucleotide kinase; 99.2 5E-11 1.7E-15 109.3 11.9 122 35-221 2-126 (181)
35 2rhm_A Putative kinase; P-loop 99.1 2.3E-09 7.9E-14 99.4 15.7 122 33-221 3-125 (193)
36 3a4m_A L-seryl-tRNA(SEC) kinas 99.0 6.1E-09 2.1E-13 102.4 16.2 118 34-221 3-120 (260)
37 1ltq_A Polynucleotide kinase; 99.0 1.3E-09 4.6E-14 108.8 9.3 123 35-221 2-126 (301)
38 1tev_A UMP-CMP kinase; ploop, 98.9 2.8E-08 9.6E-13 91.8 14.4 78 171-255 85-162 (196)
39 2cdn_A Adenylate kinase; phosp 98.8 3.4E-08 1.2E-12 92.7 13.5 168 31-269 16-185 (201)
40 1gvn_B Zeta; postsegregational 98.8 8.5E-08 2.9E-12 95.8 16.4 180 32-276 30-214 (287)
41 2vli_A Antibiotic resistance p 98.8 1.1E-08 3.7E-13 94.1 7.9 53 168-221 73-125 (183)
42 2yvu_A Probable adenylyl-sulfa 98.7 4.2E-08 1.4E-12 90.9 10.6 120 33-218 11-130 (186)
43 3t61_A Gluconokinase; PSI-biol 98.7 3.8E-08 1.3E-12 92.4 10.3 48 170-221 84-131 (202)
44 2bwj_A Adenylate kinase 5; pho 98.7 1.4E-07 4.8E-12 87.6 13.7 89 171-269 90-180 (199)
45 1qf9_A UMP/CMP kinase, protein 98.7 2E-07 6.8E-12 85.9 13.5 79 171-256 82-160 (194)
46 2p5t_B PEZT; postsegregational 98.7 1.9E-07 6.3E-12 91.3 13.1 129 32-222 29-158 (253)
47 3sr0_A Adenylate kinase; phosp 98.6 7.8E-08 2.7E-12 91.6 9.5 156 36-256 1-173 (206)
48 3dl0_A Adenylate kinase; phosp 98.6 2E-07 6.8E-12 88.3 10.9 85 171-256 77-183 (216)
49 3fb4_A Adenylate kinase; psych 98.6 3.1E-07 1E-11 86.9 12.1 85 171-256 77-183 (216)
50 1qhx_A CPT, protein (chloramph 98.6 1.8E-07 6E-12 85.6 9.6 47 171-220 85-132 (178)
51 3cm0_A Adenylate kinase; ATP-b 98.5 4.2E-07 1.4E-11 83.7 11.3 73 175-255 80-154 (186)
52 3tlx_A Adenylate kinase 2; str 98.5 6.4E-07 2.2E-11 87.1 11.9 178 32-269 26-227 (243)
53 2c95_A Adenylate kinase 1; tra 98.5 1.1E-06 3.9E-11 81.2 13.0 89 171-269 87-177 (196)
54 1aky_A Adenylate kinase; ATP:A 98.5 5.6E-07 1.9E-11 85.6 11.1 98 172-270 83-204 (220)
55 3umf_A Adenylate kinase; rossm 98.5 3.9E-07 1.3E-11 87.4 9.8 157 32-256 26-182 (217)
56 1m7g_A Adenylylsulfate kinase; 98.5 4E-07 1.4E-11 86.2 9.6 120 32-217 22-148 (211)
57 3be4_A Adenylate kinase; malar 98.5 8.6E-07 2.9E-11 84.3 11.5 99 171-270 82-204 (217)
58 1x6v_B Bifunctional 3'-phospho 98.4 9E-07 3.1E-11 97.2 10.9 120 34-219 51-170 (630)
59 4eun_A Thermoresistant glucoki 98.4 6.2E-07 2.1E-11 84.1 8.4 28 34-61 28-55 (200)
60 1ukz_A Uridylate kinase; trans 98.3 7.2E-06 2.5E-10 76.6 14.6 37 33-74 13-49 (203)
61 2axn_A 6-phosphofructo-2-kinas 98.3 2E-06 6.9E-11 92.9 11.2 167 7-236 32-205 (520)
62 1knq_A Gluconate kinase; ALFA/ 98.3 5.3E-06 1.8E-10 75.6 12.1 27 35-61 8-34 (175)
63 2xb4_A Adenylate kinase; ATP-b 98.3 5E-06 1.7E-10 79.5 12.4 34 36-74 1-34 (223)
64 1m8p_A Sulfate adenylyltransfe 98.3 2.3E-06 7.8E-11 93.5 10.6 117 34-217 395-512 (573)
65 3uie_A Adenylyl-sulfate kinase 98.2 4.3E-06 1.5E-10 78.3 9.8 118 33-218 23-140 (200)
66 2pez_A Bifunctional 3'-phospho 98.2 1.1E-05 3.7E-10 73.9 11.5 47 171-218 76-122 (179)
67 3trf_A Shikimate kinase, SK; a 98.2 2.4E-06 8.1E-11 78.6 6.8 41 35-80 5-45 (185)
68 3lw7_A Adenylate kinase relate 98.1 9.3E-06 3.2E-10 72.9 10.0 46 170-220 76-121 (179)
69 4eaq_A DTMP kinase, thymidylat 98.1 8.4E-05 2.9E-09 71.5 16.7 34 32-66 23-56 (229)
70 1zd8_A GTP:AMP phosphotransfer 98.1 8.3E-06 2.8E-10 77.8 8.8 30 34-63 6-35 (227)
71 1ak2_A Adenylate kinase isoenz 98.1 1.1E-05 3.6E-10 77.5 9.6 28 34-61 15-42 (233)
72 2gks_A Bifunctional SAT/APS ki 98.1 6.3E-06 2.2E-10 89.5 8.7 117 34-218 371-487 (546)
73 2wwf_A Thymidilate kinase, put 98.0 3.8E-05 1.3E-09 71.8 12.1 36 34-69 9-44 (212)
74 1e4v_A Adenylate kinase; trans 98.0 2.9E-05 1E-09 73.3 10.1 33 37-74 2-34 (214)
75 3gmt_A Adenylate kinase; ssgci 97.9 1.7E-05 5.7E-10 76.6 8.2 156 36-256 9-187 (230)
76 3vaa_A Shikimate kinase, SK; s 97.9 7.7E-06 2.6E-10 76.5 5.6 39 34-77 24-62 (199)
77 2iyv_A Shikimate kinase, SK; t 97.9 1E-05 3.5E-10 74.3 5.3 40 36-80 3-42 (184)
78 2plr_A DTMP kinase, probable t 97.9 0.00011 3.6E-09 68.5 12.1 29 35-63 4-32 (213)
79 3kb2_A SPBC2 prophage-derived 97.8 0.00014 4.7E-09 65.4 12.1 26 36-61 2-27 (173)
80 1zak_A Adenylate kinase; ATP:A 97.8 3E-05 1E-09 73.6 7.9 31 34-64 4-34 (222)
81 1nn5_A Similar to deoxythymidy 97.8 0.00022 7.4E-09 66.6 13.0 36 34-69 8-43 (215)
82 1nks_A Adenylate kinase; therm 97.8 4E-05 1.4E-09 70.2 7.7 38 36-73 2-39 (194)
83 2z0h_A DTMP kinase, thymidylat 97.8 0.00013 4.6E-09 67.1 11.3 30 37-66 2-31 (197)
84 1bif_A 6-phosphofructo-2-kinas 97.7 0.00011 3.9E-09 78.0 10.9 164 8-234 37-207 (469)
85 2ze6_A Isopentenyl transferase 97.7 0.00011 3.7E-09 71.7 9.9 33 37-74 3-35 (253)
86 1kht_A Adenylate kinase; phosp 97.7 0.00027 9.4E-09 64.5 11.1 40 35-74 3-42 (192)
87 2pbr_A DTMP kinase, thymidylat 97.6 0.0004 1.4E-08 63.6 12.0 28 37-64 2-29 (195)
88 3v9p_A DTMP kinase, thymidylat 97.6 7.6E-05 2.6E-09 71.9 7.2 34 34-67 24-61 (227)
89 1e6c_A Shikimate kinase; phosp 97.6 0.00033 1.1E-08 63.1 10.8 39 37-80 4-42 (173)
90 2pt5_A Shikimate kinase, SK; a 97.6 3.8E-05 1.3E-09 69.1 3.9 38 37-79 2-39 (168)
91 3lv8_A DTMP kinase, thymidylat 97.6 0.00037 1.3E-08 67.4 11.1 32 34-65 26-57 (236)
92 4edh_A DTMP kinase, thymidylat 97.5 0.00083 2.8E-08 63.8 11.8 33 35-67 6-38 (213)
93 1via_A Shikimate kinase; struc 97.5 6.2E-05 2.1E-09 68.5 3.7 39 37-80 6-44 (175)
94 4tmk_A Protein (thymidylate ki 97.4 0.00086 3E-08 63.8 11.4 30 35-64 3-32 (213)
95 1zuh_A Shikimate kinase; alpha 97.4 0.00026 8.8E-09 63.8 7.4 40 36-80 8-47 (168)
96 4i1u_A Dephospho-COA kinase; s 97.3 0.0012 4E-08 62.8 11.0 38 36-79 10-47 (210)
97 2grj_A Dephospho-COA kinase; T 97.3 0.00072 2.5E-08 63.2 9.2 40 35-79 12-51 (192)
98 2jaq_A Deoxyguanosine kinase; 97.2 0.0019 6.6E-08 59.4 10.8 25 37-61 2-26 (205)
99 3cr8_A Sulfate adenylyltranfer 97.2 0.0013 4.4E-08 71.4 10.7 118 33-217 367-485 (552)
100 4gp7_A Metallophosphoesterase; 97.1 0.0016 5.5E-08 59.2 9.0 48 171-219 72-119 (171)
101 1uj2_A Uridine-cytidine kinase 97.1 0.0038 1.3E-07 60.3 12.1 43 33-75 20-67 (252)
102 2bdt_A BH3686; alpha-beta prot 97.1 0.002 6.7E-08 59.1 9.6 24 36-59 3-26 (189)
103 1gtv_A TMK, thymidylate kinase 97.0 0.00029 9.9E-09 65.8 3.1 32 37-68 2-33 (214)
104 2f6r_A COA synthase, bifunctio 96.9 0.0019 6.6E-08 63.8 8.6 39 33-77 73-111 (281)
105 3ld9_A DTMP kinase, thymidylat 96.9 0.0054 1.8E-07 58.7 11.4 36 33-68 19-55 (223)
106 1vht_A Dephospho-COA kinase; s 96.9 0.0089 3.1E-07 56.0 12.7 38 34-77 3-40 (218)
107 3iij_A Coilin-interacting nucl 96.9 0.00073 2.5E-08 61.5 4.8 36 35-75 11-46 (180)
108 2if2_A Dephospho-COA kinase; a 96.9 0.00094 3.2E-08 62.0 5.6 36 37-78 3-38 (204)
109 1kag_A SKI, shikimate kinase I 96.9 0.0069 2.4E-07 54.3 11.1 27 35-61 4-30 (173)
110 4hlc_A DTMP kinase, thymidylat 96.9 0.019 6.5E-07 54.0 14.5 25 36-60 3-27 (205)
111 1rz3_A Hypothetical protein rb 96.8 0.00041 1.4E-08 64.8 2.2 43 33-75 20-62 (201)
112 3nwj_A ATSK2; P loop, shikimat 96.7 0.0014 4.7E-08 63.9 5.2 28 35-62 48-75 (250)
113 1zp6_A Hypothetical protein AT 96.7 0.015 5.1E-07 53.0 12.0 27 33-59 7-33 (191)
114 2bbw_A Adenylate kinase 4, AK4 96.7 0.0064 2.2E-07 58.3 9.8 29 34-62 26-54 (246)
115 3hjn_A DTMP kinase, thymidylat 96.6 0.061 2.1E-06 50.0 16.0 32 36-67 1-32 (197)
116 3fdi_A Uncharacterized protein 96.5 0.021 7E-07 53.5 11.5 30 35-64 6-35 (201)
117 3foz_A TRNA delta(2)-isopenten 96.4 0.026 8.8E-07 56.7 12.4 34 34-72 9-42 (316)
118 3a8t_A Adenylate isopentenyltr 96.3 0.019 6.5E-07 58.3 10.7 34 35-73 40-73 (339)
119 3dm5_A SRP54, signal recogniti 96.2 0.008 2.7E-07 63.3 7.7 42 34-75 99-140 (443)
120 3crm_A TRNA delta(2)-isopenten 96.2 0.017 5.9E-07 58.3 9.8 27 35-61 5-31 (323)
121 3kl4_A SRP54, signal recogniti 96.0 0.024 8.3E-07 59.5 10.2 42 34-75 96-137 (433)
122 1y63_A LMAJ004144AAA protein; 95.6 0.0036 1.2E-07 57.3 1.6 28 34-61 9-37 (184)
123 3hdt_A Putative kinase; struct 95.5 0.073 2.5E-06 50.7 10.6 33 34-66 13-45 (223)
124 3tr0_A Guanylate kinase, GMP k 95.5 0.087 3E-06 48.2 10.8 27 34-60 6-32 (205)
125 3ec2_A DNA replication protein 95.1 0.073 2.5E-06 48.0 8.7 26 35-60 38-63 (180)
126 3exa_A TRNA delta(2)-isopenten 95.1 0.13 4.6E-06 51.6 11.2 33 35-72 3-35 (322)
127 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4E-07 55.2 3.2 37 35-76 5-41 (227)
128 2v54_A DTMP kinase, thymidylat 95.0 0.009 3.1E-07 55.0 2.2 26 34-59 3-28 (204)
129 1a7j_A Phosphoribulokinase; tr 95.0 0.017 6E-07 57.2 4.4 43 34-76 4-46 (290)
130 3tau_A Guanylate kinase, GMP k 94.9 0.009 3.1E-07 55.9 2.0 27 34-60 7-33 (208)
131 3r20_A Cytidylate kinase; stru 94.8 0.012 4.1E-07 56.7 2.8 40 33-77 7-46 (233)
132 1uf9_A TT1252 protein; P-loop, 94.7 0.0071 2.4E-07 55.5 0.8 37 33-75 6-42 (203)
133 4dzz_A Plasmid partitioning pr 94.4 0.17 5.9E-06 46.2 9.6 38 35-72 2-39 (206)
134 3ake_A Cytidylate kinase; CMP 94.4 0.018 6.1E-07 53.1 2.8 36 37-77 4-39 (208)
135 2qor_A Guanylate kinase; phosp 94.4 0.014 4.6E-07 54.3 1.9 29 32-60 9-37 (204)
136 1nd6_A Prostatic acid phosphat 94.2 0.044 1.5E-06 55.3 5.5 65 299-363 7-89 (354)
137 3a00_A Guanylate kinase, GMP k 94.2 0.099 3.4E-06 47.6 7.3 26 36-61 2-27 (186)
138 2v3c_C SRP54, signal recogniti 94.0 0.023 8E-07 59.6 3.1 42 34-75 98-139 (432)
139 1ye8_A Protein THEP1, hypothet 94.0 0.076 2.6E-06 48.6 6.2 24 37-60 2-25 (178)
140 1jjv_A Dephospho-COA kinase; P 94.0 0.022 7.5E-07 52.7 2.5 36 36-77 3-38 (206)
141 1vma_A Cell division protein F 93.9 0.032 1.1E-06 55.8 3.8 43 33-75 102-144 (306)
142 1g8f_A Sulfate adenylyltransfe 93.9 0.028 9.4E-07 60.3 3.3 28 34-61 394-421 (511)
143 4a1f_A DNAB helicase, replicat 93.8 0.46 1.6E-05 48.0 12.1 55 16-71 27-82 (338)
144 3h4m_A Proteasome-activating n 93.7 0.27 9.2E-06 47.5 9.9 28 33-60 49-76 (285)
145 3c8u_A Fructokinase; YP_612366 93.7 0.059 2E-06 50.1 4.8 38 33-70 20-57 (208)
146 2h92_A Cytidylate kinase; ross 93.6 0.013 4.4E-07 54.8 0.2 36 35-75 3-38 (219)
147 2j37_W Signal recognition part 93.5 0.036 1.2E-06 59.4 3.4 43 33-75 99-141 (504)
148 1xjc_A MOBB protein homolog; s 93.5 0.043 1.5E-06 50.1 3.4 37 36-72 5-41 (169)
149 3la6_A Tyrosine-protein kinase 93.4 0.22 7.6E-06 49.0 8.8 43 33-75 91-133 (286)
150 1dkq_A Phytase; histidine acid 93.3 0.1 3.5E-06 54.2 6.3 66 298-363 11-102 (410)
151 3syl_A Protein CBBX; photosynt 93.3 0.31 1.1E-05 47.6 9.6 32 33-64 65-96 (309)
152 2xxa_A Signal recognition part 93.2 0.049 1.7E-06 57.2 3.8 42 34-75 99-141 (433)
153 2qt1_A Nicotinamide riboside k 93.2 0.024 8.3E-07 52.5 1.3 29 31-59 17-45 (207)
154 4b4t_M 26S protease regulatory 93.2 0.46 1.6E-05 49.7 11.1 29 33-61 213-241 (434)
155 3d3q_A TRNA delta(2)-isopenten 93.1 0.044 1.5E-06 55.6 3.1 35 35-74 7-41 (340)
156 1q3t_A Cytidylate kinase; nucl 93.0 0.049 1.7E-06 51.7 3.2 38 34-76 15-52 (236)
157 3t15_A Ribulose bisphosphate c 93.0 0.047 1.6E-06 53.9 3.1 41 32-75 33-73 (293)
158 2j41_A Guanylate kinase; GMP, 93.0 0.036 1.2E-06 50.9 2.1 26 34-59 5-30 (207)
159 4e22_A Cytidylate kinase; P-lo 93.0 0.03 1E-06 54.1 1.5 30 34-63 26-55 (252)
160 3it3_A Acid phosphatase; HAP, 92.9 0.15 5E-06 51.7 6.7 66 298-363 11-94 (342)
161 2v1u_A Cell division control p 92.9 0.49 1.7E-05 47.3 10.6 29 33-61 42-70 (387)
162 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.2 6.8E-06 47.6 7.3 28 33-60 37-64 (262)
163 4b4t_K 26S protease regulatory 92.9 0.91 3.1E-05 47.4 12.8 29 33-61 204-232 (428)
164 2ocp_A DGK, deoxyguanosine kin 92.8 0.04 1.4E-06 52.4 2.2 26 35-60 2-27 (241)
165 3bos_A Putative DNA replicatio 92.6 0.084 2.9E-06 49.2 4.1 42 33-74 50-91 (242)
166 1p5z_B DCK, deoxycytidine kina 92.6 0.035 1.2E-06 53.6 1.5 28 33-60 22-49 (263)
167 3e70_C DPA, signal recognition 92.6 0.069 2.3E-06 53.9 3.7 42 33-74 127-168 (328)
168 3eph_A TRNA isopentenyltransfe 92.6 0.14 4.8E-06 53.2 6.0 34 35-73 2-35 (409)
169 1odf_A YGR205W, hypothetical 3 92.5 0.073 2.5E-06 52.7 3.6 31 32-62 28-58 (290)
170 2w58_A DNAI, primosome compone 92.5 0.064 2.2E-06 49.2 3.0 36 36-71 55-90 (202)
171 1yrb_A ATP(GTP)binding protein 92.4 0.075 2.6E-06 50.8 3.6 39 34-73 13-51 (262)
172 3lnc_A Guanylate kinase, GMP k 92.4 0.94 3.2E-05 42.4 11.3 26 35-60 27-53 (231)
173 3nh6_A ATP-binding cassette SU 92.2 0.33 1.1E-05 48.4 8.1 28 33-60 78-105 (306)
174 3b9q_A Chloroplast SRP recepto 92.1 0.09 3.1E-06 52.4 3.9 40 33-72 98-137 (302)
175 3tif_A Uncharacterized ABC tra 92.1 0.61 2.1E-05 44.4 9.6 30 32-61 28-57 (235)
176 1rj9_A FTSY, signal recognitio 92.1 0.085 2.9E-06 52.6 3.6 39 34-72 101-139 (304)
177 2px0_A Flagellar biosynthesis 92.0 0.09 3.1E-06 52.2 3.7 43 33-75 103-146 (296)
178 2kjq_A DNAA-related protein; s 92.0 0.12 4E-06 45.8 4.1 31 34-64 35-65 (149)
179 1j8m_F SRP54, signal recogniti 92.0 0.11 3.8E-06 51.6 4.4 41 35-75 98-138 (297)
180 2og2_A Putative signal recogni 92.0 0.095 3.2E-06 53.6 3.9 41 33-73 155-195 (359)
181 1zu4_A FTSY; GTPase, signal re 91.9 0.098 3.4E-06 52.6 3.9 43 33-75 103-145 (320)
182 4b4t_L 26S protease subunit RP 91.8 0.54 1.8E-05 49.3 9.5 30 32-61 212-241 (437)
183 2yhs_A FTSY, cell division pro 91.8 0.11 3.7E-06 55.4 4.2 40 33-72 291-330 (503)
184 1jbk_A CLPB protein; beta barr 91.4 0.088 3E-06 46.8 2.6 29 33-61 41-69 (195)
185 2wnh_A 3-phytase; histidine ac 91.3 0.18 6.2E-06 52.4 5.3 46 318-363 53-110 (418)
186 2ixe_A Antigen peptide transpo 91.3 0.96 3.3E-05 44.0 10.2 29 33-61 43-71 (271)
187 2dyk_A GTP-binding protein; GT 91.2 0.054 1.9E-06 47.0 1.0 42 170-212 80-121 (161)
188 2ffh_A Protein (FFH); SRP54, s 91.2 0.11 3.8E-06 54.3 3.5 42 34-75 97-138 (425)
189 4b4t_H 26S protease regulatory 91.2 0.46 1.6E-05 50.1 8.1 29 33-61 241-269 (467)
190 3eie_A Vacuolar protein sortin 91.0 0.27 9.2E-06 48.9 5.9 27 34-60 50-76 (322)
191 1fnn_A CDC6P, cell division co 90.9 1.7 5.7E-05 43.5 11.9 26 37-62 46-71 (389)
192 4b4t_J 26S protease regulatory 90.9 0.37 1.3E-05 50.0 7.0 29 33-61 180-208 (405)
193 3asz_A Uridine kinase; cytidin 90.8 0.11 3.8E-06 47.9 2.8 27 34-60 5-31 (211)
194 3p32_A Probable GTPase RV1496/ 90.8 0.15 5.2E-06 51.7 4.0 44 32-75 76-119 (355)
195 3b9p_A CG5977-PA, isoform A; A 90.8 0.33 1.1E-05 47.3 6.3 27 34-60 53-79 (297)
196 2z4s_A Chromosomal replication 90.8 1.1 3.7E-05 46.8 10.7 27 35-61 130-156 (440)
197 1svi_A GTP-binding protein YSX 90.8 0.45 1.5E-05 42.7 6.8 39 172-211 108-146 (195)
198 3ch4_B Pmkase, phosphomevalona 90.5 0.15 5.2E-06 47.8 3.4 42 33-76 9-50 (202)
199 1np6_A Molybdopterin-guanine d 90.4 0.15 5.2E-06 46.5 3.2 35 36-70 7-41 (174)
200 1u94_A RECA protein, recombina 90.4 1.1 3.7E-05 45.6 9.9 37 34-70 62-98 (356)
201 1kgd_A CASK, peripheral plasma 90.4 0.1 3.5E-06 47.3 2.0 25 36-60 6-30 (180)
202 1sq5_A Pantothenate kinase; P- 90.4 0.18 6.1E-06 50.1 4.0 40 33-72 78-119 (308)
203 3bh0_A DNAB-like replicative h 90.2 2 6.7E-05 42.6 11.5 32 32-63 65-96 (315)
204 3czp_A Putative polyphosphate 90.1 1 3.5E-05 47.9 9.8 40 32-71 40-79 (500)
205 3tqc_A Pantothenate kinase; bi 90.1 0.21 7.1E-06 50.3 4.2 30 32-61 89-118 (321)
206 3n70_A Transport activator; si 90.1 0.12 4E-06 45.2 2.0 29 33-61 22-50 (145)
207 2p65_A Hypothetical protein PF 90.0 0.11 3.8E-06 46.1 1.9 29 33-61 41-69 (187)
208 2ff7_A Alpha-hemolysin translo 90.0 0.9 3.1E-05 43.6 8.5 29 33-61 33-61 (247)
209 4g1u_C Hemin import ATP-bindin 90.0 0.92 3.1E-05 44.1 8.7 29 33-61 35-63 (266)
210 3ntl_A Acid glucose-1-phosphat 89.9 0.39 1.3E-05 49.7 6.3 66 298-363 10-102 (398)
211 3d8b_A Fidgetin-like protein 1 89.8 0.55 1.9E-05 47.5 7.2 28 33-60 115-142 (357)
212 2q6t_A DNAB replication FORK h 89.8 1.6 5.5E-05 45.5 11.0 54 16-70 181-236 (444)
213 2chg_A Replication factor C sm 89.8 0.16 5.3E-06 46.3 2.8 25 38-62 41-65 (226)
214 1lv7_A FTSH; alpha/beta domain 89.8 0.15 5.1E-06 48.7 2.7 27 34-60 44-70 (257)
215 2zts_A Putative uncharacterize 89.7 1.6 5.3E-05 40.7 9.9 25 34-58 29-53 (251)
216 1qwo_A Phytase; alpha barrel, 89.7 0.3 1E-05 51.1 5.2 46 318-363 101-151 (442)
217 2f1r_A Molybdopterin-guanine d 89.7 0.11 3.6E-06 47.4 1.5 33 37-69 4-36 (171)
218 4fcw_A Chaperone protein CLPB; 89.6 0.19 6.6E-06 49.1 3.5 37 36-72 48-84 (311)
219 3lxx_A GTPase IMAP family memb 89.6 0.32 1.1E-05 45.9 4.9 25 33-57 27-51 (239)
220 2ghi_A Transport protein; mult 89.6 1.2 4E-05 43.1 9.1 28 33-60 44-71 (260)
221 4b4t_I 26S protease regulatory 89.6 0.57 2E-05 48.9 7.1 29 33-61 214-242 (437)
222 3tmk_A Thymidylate kinase; pho 89.5 0.15 5E-06 48.3 2.4 28 34-61 4-31 (216)
223 3gfo_A Cobalt import ATP-bindi 89.5 1.9 6.5E-05 42.1 10.5 29 33-61 32-60 (275)
224 2yl4_A ATP-binding cassette SU 89.5 1.5 5.2E-05 47.5 10.8 28 33-60 368-395 (595)
225 3i8s_A Ferrous iron transport 89.4 0.44 1.5E-05 46.4 5.8 24 35-58 3-26 (274)
226 4dcu_A GTP-binding protein ENG 89.4 0.33 1.1E-05 50.9 5.2 41 171-212 104-144 (456)
227 2r8r_A Sensor protein; KDPD, P 89.3 0.26 9E-06 47.0 4.0 40 34-73 5-44 (228)
228 2fh5_B SR-beta, signal recogni 89.2 0.37 1.3E-05 44.1 4.9 24 34-57 6-29 (214)
229 3iby_A Ferrous iron transport 89.2 0.4 1.4E-05 46.3 5.3 22 37-58 3-24 (256)
230 2ga8_A Hypothetical 39.9 kDa p 89.1 0.19 6.6E-06 51.2 3.1 30 32-61 21-50 (359)
231 1ls1_A Signal recognition part 89.0 0.23 7.9E-06 49.1 3.6 41 34-74 97-137 (295)
232 3tui_C Methionine import ATP-b 88.8 2.7 9.1E-05 42.9 11.4 29 33-61 52-80 (366)
233 2r6a_A DNAB helicase, replicat 88.8 2.8 9.5E-05 43.7 11.9 39 32-70 200-239 (454)
234 2zr9_A Protein RECA, recombina 88.8 1.2 4E-05 45.1 8.7 36 34-69 60-95 (349)
235 2qgz_A Helicase loader, putati 88.7 0.2 6.7E-06 49.9 2.8 37 35-71 152-189 (308)
236 1ex7_A Guanylate kinase; subst 88.6 0.56 1.9E-05 43.2 5.7 22 38-59 4-25 (186)
237 1cr0_A DNA primase/helicase; R 88.5 5.8 0.0002 38.4 13.4 53 17-69 16-70 (296)
238 1iqp_A RFCS; clamp loader, ext 88.5 0.54 1.8E-05 45.9 5.8 24 37-60 48-71 (327)
239 2olj_A Amino acid ABC transpor 88.5 2.4 8.2E-05 41.1 10.4 28 33-60 48-75 (263)
240 2pcj_A ABC transporter, lipopr 88.4 2.4 8.1E-05 39.9 10.1 29 33-61 28-56 (224)
241 3b5x_A Lipid A export ATP-bind 88.4 0.85 2.9E-05 49.4 7.8 28 34-61 368-395 (582)
242 2bjv_A PSP operon transcriptio 88.3 0.2 6.8E-06 48.1 2.5 39 34-72 28-66 (265)
243 1oix_A RAS-related protein RAB 88.3 0.17 5.7E-06 46.1 1.8 25 35-59 29-53 (191)
244 1l8q_A Chromosomal replication 88.3 0.21 7.3E-06 49.4 2.7 36 35-70 37-72 (324)
245 1njg_A DNA polymerase III subu 88.2 0.2 6.8E-06 46.0 2.3 28 34-61 44-71 (250)
246 3b60_A Lipid A export ATP-bind 88.1 1.9 6.3E-05 46.7 10.3 28 33-60 367-394 (582)
247 3u61_B DNA polymerase accessor 88.1 1.2 4.2E-05 43.8 8.2 28 33-60 46-73 (324)
248 1b0u_A Histidine permease; ABC 88.1 2.5 8.7E-05 40.7 10.3 30 32-61 29-58 (262)
249 3pqc_A Probable GTP-binding pr 88.1 0.92 3.1E-05 40.3 6.7 38 172-210 107-144 (195)
250 4dhe_A Probable GTP-binding pr 88.0 1.4 4.8E-05 40.3 8.1 37 173-210 119-155 (223)
251 3qf4_A ABC transporter, ATP-bi 87.9 1.1 3.7E-05 48.7 8.3 28 33-60 367-394 (587)
252 4a82_A Cystic fibrosis transme 87.8 1 3.6E-05 48.6 8.0 29 33-61 365-393 (578)
253 3aez_A Pantothenate kinase; tr 87.8 0.27 9.3E-06 49.1 3.1 30 32-61 87-116 (312)
254 2nq2_C Hypothetical ABC transp 87.7 2.6 8.9E-05 40.4 10.1 29 33-61 29-57 (253)
255 3rlf_A Maltose/maltodextrin im 87.6 3.1 0.00011 42.6 11.0 29 33-61 27-55 (381)
256 1ixz_A ATP-dependent metallopr 87.5 0.2 6.9E-06 47.7 1.9 26 35-60 49-74 (254)
257 1ofh_A ATP-dependent HSL prote 87.5 0.21 7.2E-06 48.6 2.1 27 34-60 49-75 (310)
258 1tue_A Replication protein E1; 87.5 0.21 7.2E-06 47.1 2.0 27 34-60 57-83 (212)
259 2onk_A Molybdate/tungstate ABC 87.4 2.1 7.3E-05 40.8 9.2 26 36-61 25-50 (240)
260 3cf0_A Transitional endoplasmi 87.4 0.25 8.6E-06 48.7 2.6 28 33-60 47-74 (301)
261 3k4q_A 3-phytase A; PHYA, 3-ph 87.4 0.59 2E-05 49.0 5.5 46 318-363 102-152 (444)
262 1d2n_A N-ethylmaleimide-sensit 87.2 0.26 8.8E-06 47.5 2.5 29 32-60 61-89 (272)
263 2jeo_A Uridine-cytidine kinase 87.2 0.3 1E-05 46.5 3.0 30 32-61 22-51 (245)
264 1wf3_A GTP-binding protein; GT 87.0 0.63 2.1E-05 46.1 5.3 21 37-57 9-29 (301)
265 2w0m_A SSO2452; RECA, SSPF, un 86.9 0.37 1.3E-05 44.5 3.3 36 34-69 22-57 (235)
266 3czp_A Putative polyphosphate 86.7 1.7 5.8E-05 46.2 8.7 41 32-72 297-337 (500)
267 2qi9_C Vitamin B12 import ATP- 86.7 4.8 0.00017 38.5 11.3 30 33-62 24-53 (249)
268 3czq_A Putative polyphosphate 86.5 0.99 3.4E-05 44.9 6.3 38 32-69 83-120 (304)
269 1vpl_A ABC transporter, ATP-bi 86.4 3.2 0.00011 39.9 9.9 30 32-61 38-67 (256)
270 2d2e_A SUFC protein; ABC-ATPas 86.4 7.3 0.00025 37.1 12.4 26 33-58 27-52 (250)
271 2www_A Methylmalonic aciduria 86.3 0.46 1.6E-05 48.1 4.0 40 35-74 74-113 (349)
272 2hjg_A GTP-binding protein ENG 86.3 0.74 2.5E-05 47.9 5.6 41 171-212 84-124 (436)
273 1lvg_A Guanylate kinase, GMP k 86.3 0.25 8.5E-06 45.6 1.8 26 35-60 4-29 (198)
274 1ji0_A ABC transporter; ATP bi 86.2 1.9 6.6E-05 40.9 8.1 29 33-61 30-58 (240)
275 3qf4_B Uncharacterized ABC tra 86.0 0.45 1.5E-05 51.8 3.9 28 33-60 379-406 (598)
276 3iev_A GTP-binding protein ERA 86.0 1.4 4.9E-05 43.4 7.3 39 171-210 94-133 (308)
277 2x8a_A Nuclear valosin-contain 85.9 0.27 9.3E-06 48.0 1.9 24 37-60 46-69 (274)
278 3co5_A Putative two-component 85.9 0.15 5.1E-06 44.5 -0.0 27 34-60 26-52 (143)
279 2ce7_A Cell division protein F 85.9 1.4 4.8E-05 46.6 7.5 27 34-60 48-74 (476)
280 2r62_A Cell division protease 85.7 0.18 6E-06 48.4 0.4 27 35-61 44-70 (268)
281 3hws_A ATP-dependent CLP prote 85.7 0.28 9.5E-06 49.6 1.9 27 34-60 50-76 (363)
282 1iy2_A ATP-dependent metallopr 85.7 0.28 9.7E-06 47.5 1.9 26 35-60 73-98 (278)
283 1g41_A Heat shock protein HSLU 85.6 0.27 9.3E-06 51.6 1.8 27 35-61 50-76 (444)
284 2nzj_A GTP-binding protein REM 85.5 0.34 1.1E-05 42.4 2.1 24 34-57 3-26 (175)
285 2p67_A LAO/AO transport system 85.4 0.52 1.8E-05 47.4 3.8 41 33-73 54-94 (341)
286 3fvq_A Fe(3+) IONS import ATP- 85.3 3.7 0.00013 41.7 10.1 29 33-61 28-56 (359)
287 3bgw_A DNAB-like replicative h 85.3 3.6 0.00012 43.0 10.3 39 33-71 195-233 (444)
288 1xwi_A SKD1 protein; VPS4B, AA 85.2 0.38 1.3E-05 48.0 2.6 26 34-59 44-69 (322)
289 3cf2_A TER ATPase, transitiona 85.1 0.66 2.3E-05 52.3 4.8 28 34-61 237-264 (806)
290 1um8_A ATP-dependent CLP prote 85.1 0.31 1.1E-05 49.5 1.9 26 35-60 72-97 (376)
291 2i3b_A HCR-ntpase, human cance 85.1 0.32 1.1E-05 44.8 1.9 27 37-63 3-29 (189)
292 2woo_A ATPase GET3; tail-ancho 85.1 0.48 1.6E-05 47.5 3.3 42 33-74 17-58 (329)
293 1z2a_A RAS-related protein RAB 85.0 0.37 1.3E-05 41.8 2.2 24 34-57 4-27 (168)
294 2yz2_A Putative ABC transporte 85.0 1.8 6.1E-05 41.9 7.3 30 32-61 30-59 (266)
295 3ney_A 55 kDa erythrocyte memb 84.9 0.36 1.2E-05 45.0 2.1 27 34-60 18-44 (197)
296 1sgw_A Putative ABC transporte 84.9 1.5 5.1E-05 41.2 6.5 28 34-61 34-61 (214)
297 2wsm_A Hydrogenase expression/ 84.9 0.48 1.6E-05 43.7 3.0 27 34-60 29-55 (221)
298 1in4_A RUVB, holliday junction 84.9 0.34 1.2E-05 48.5 2.1 25 36-60 52-76 (334)
299 2hf9_A Probable hydrogenase ni 84.7 0.46 1.6E-05 44.0 2.8 27 33-59 36-62 (226)
300 2qp9_X Vacuolar protein sortin 84.7 0.35 1.2E-05 49.0 2.1 26 35-60 84-109 (355)
301 3uk6_A RUVB-like 2; hexameric 84.5 0.33 1.1E-05 48.7 1.8 25 36-60 71-95 (368)
302 3pfi_A Holliday junction ATP-d 84.4 0.34 1.2E-05 48.1 1.8 27 35-61 55-81 (338)
303 1kao_A RAP2A; GTP-binding prot 84.3 0.39 1.3E-05 41.4 2.0 23 35-57 3-25 (167)
304 2erx_A GTP-binding protein DI- 84.3 0.39 1.3E-05 41.7 2.0 23 35-57 3-25 (172)
305 1g8p_A Magnesium-chelatase 38 84.3 0.35 1.2E-05 48.0 1.8 23 38-60 48-70 (350)
306 1upt_A ARL1, ADP-ribosylation 84.3 0.5 1.7E-05 41.1 2.7 25 33-57 5-29 (171)
307 2gj8_A MNME, tRNA modification 84.1 0.4 1.4E-05 42.6 2.0 24 35-58 4-27 (172)
308 1q57_A DNA primase/helicase; d 84.1 2.9 0.0001 44.1 9.1 38 33-70 240-278 (503)
309 1g29_1 MALK, maltose transport 84.0 6.2 0.00021 40.2 11.2 28 33-60 27-54 (372)
310 2qby_B CDC6 homolog 3, cell di 84.0 0.52 1.8E-05 47.3 3.1 29 33-61 43-71 (384)
311 2ce2_X GTPase HRAS; signaling 83.9 0.4 1.4E-05 41.2 1.9 23 35-57 3-25 (166)
312 3ug7_A Arsenical pump-driving 83.9 0.69 2.4E-05 46.7 3.9 42 32-73 23-64 (349)
313 2pjz_A Hypothetical protein ST 83.9 2.9 9.8E-05 40.5 8.2 25 35-59 30-54 (263)
314 2qmh_A HPR kinase/phosphorylas 83.9 0.57 2E-05 43.9 3.0 25 35-59 34-58 (205)
315 1u8z_A RAS-related protein RAL 83.9 0.48 1.6E-05 40.8 2.4 23 35-57 4-26 (168)
316 3zq6_A Putative arsenical pump 83.8 0.78 2.7E-05 45.7 4.2 39 35-73 14-52 (324)
317 2wji_A Ferrous iron transport 83.8 0.4 1.4E-05 42.1 1.9 23 35-57 3-25 (165)
318 2zej_A Dardarin, leucine-rich 83.8 0.36 1.2E-05 43.3 1.6 23 36-58 3-25 (184)
319 1ojl_A Transcriptional regulat 83.7 0.46 1.6E-05 47.0 2.4 40 33-72 23-62 (304)
320 2it1_A 362AA long hypothetical 83.6 6 0.0002 40.2 10.8 29 33-61 27-55 (362)
321 2ged_A SR-beta, signal recogni 83.6 0.5 1.7E-05 42.3 2.5 25 33-57 46-70 (193)
322 1c1y_A RAS-related protein RAP 83.5 0.44 1.5E-05 41.2 2.0 23 35-57 3-25 (167)
323 2c9o_A RUVB-like 1; hexameric 83.2 0.45 1.6E-05 49.8 2.3 27 35-61 63-89 (456)
324 3con_A GTPase NRAS; structural 83.2 0.46 1.6E-05 42.5 2.0 23 35-57 21-43 (190)
325 2qm8_A GTPase/ATPase; G protei 83.1 0.79 2.7E-05 46.1 3.9 41 32-72 52-92 (337)
326 3q85_A GTP-binding protein REM 83.1 0.49 1.7E-05 41.2 2.1 22 36-57 3-24 (169)
327 2ihy_A ABC transporter, ATP-bi 83.1 1.6 5.4E-05 42.7 6.0 29 33-61 45-73 (279)
328 2hxs_A RAB-26, RAS-related pro 83.0 0.51 1.7E-05 41.4 2.2 24 34-57 5-28 (178)
329 1z47_A CYSA, putative ABC-tran 83.0 4.9 0.00017 40.7 9.8 29 33-61 39-67 (355)
330 1ek0_A Protein (GTP-binding pr 83.0 0.48 1.6E-05 41.0 2.0 23 35-57 3-25 (170)
331 2h17_A ADP-ribosylation factor 83.0 0.43 1.5E-05 42.5 1.7 27 31-57 17-43 (181)
332 1g16_A RAS-related protein SEC 83.0 0.48 1.6E-05 41.1 2.0 23 35-57 3-25 (170)
333 1r2q_A RAS-related protein RAB 82.8 0.49 1.7E-05 41.0 2.0 23 35-57 6-28 (170)
334 2wjg_A FEOB, ferrous iron tran 82.8 0.46 1.6E-05 42.3 1.9 23 35-57 7-29 (188)
335 1oxx_K GLCV, glucose, ABC tran 82.6 3 0.0001 42.3 8.0 29 33-61 29-57 (353)
336 1znw_A Guanylate kinase, GMP k 82.5 0.5 1.7E-05 43.6 2.1 28 33-60 18-45 (207)
337 2r44_A Uncharacterized protein 82.5 0.32 1.1E-05 48.2 0.7 26 36-61 47-72 (331)
338 2v9p_A Replication protein E1; 82.4 0.61 2.1E-05 46.5 2.7 28 32-59 123-150 (305)
339 1dek_A Deoxynucleoside monopho 82.3 0.69 2.3E-05 44.5 3.0 24 36-59 2-25 (241)
340 2dr3_A UPF0273 protein PH0284; 82.3 0.77 2.6E-05 42.8 3.3 36 34-69 22-57 (247)
341 1sxj_D Activator 1 41 kDa subu 82.3 0.53 1.8E-05 46.7 2.2 23 38-60 61-83 (353)
342 2orw_A Thymidine kinase; TMTK, 82.2 0.73 2.5E-05 42.0 3.0 34 36-69 4-37 (184)
343 2yyz_A Sugar ABC transporter, 82.1 6.1 0.00021 40.1 10.2 29 33-61 27-55 (359)
344 1hqc_A RUVB; extended AAA-ATPa 82.1 0.5 1.7E-05 46.4 1.9 27 34-60 37-63 (324)
345 3g5u_A MCG1178, multidrug resi 82.1 3.2 0.00011 49.3 9.1 28 33-60 414-441 (1284)
346 4f4c_A Multidrug resistance pr 82.0 2.6 8.8E-05 50.2 8.3 57 34-91 1104-1167(1321)
347 1sxj_A Activator 1 95 kDa subu 81.9 0.67 2.3E-05 49.3 3.1 27 35-61 77-103 (516)
348 1z08_A RAS-related protein RAB 81.9 0.54 1.9E-05 40.8 2.0 23 35-57 6-28 (170)
349 2qby_A CDC6 homolog 1, cell di 81.9 0.6 2E-05 46.6 2.5 29 33-61 43-71 (386)
350 2lkc_A Translation initiation 81.9 0.61 2.1E-05 40.9 2.3 25 33-57 6-30 (178)
351 1mky_A Probable GTP-binding pr 81.8 1.1 3.7E-05 46.7 4.5 42 171-213 83-124 (439)
352 4dsu_A GTPase KRAS, isoform 2B 81.7 0.56 1.9E-05 41.5 2.0 23 35-57 4-26 (189)
353 3clv_A RAB5 protein, putative; 81.7 0.69 2.4E-05 41.2 2.6 25 34-58 6-30 (208)
354 3bc1_A RAS-related protein RAB 81.7 0.56 1.9E-05 41.6 2.0 23 35-57 11-33 (195)
355 1nrj_B SR-beta, signal recogni 81.7 0.65 2.2E-05 42.6 2.5 26 33-58 10-35 (218)
356 4f4c_A Multidrug resistance pr 81.6 1.8 6.3E-05 51.5 6.9 124 34-182 443-583 (1321)
357 1z6g_A Guanylate kinase; struc 81.6 0.47 1.6E-05 44.4 1.5 26 34-59 22-47 (218)
358 3q72_A GTP-binding protein RAD 81.6 0.51 1.7E-05 40.9 1.6 21 36-56 3-23 (166)
359 2vp4_A Deoxynucleoside kinase; 81.6 0.56 1.9E-05 44.1 2.1 26 33-58 18-43 (230)
360 1m7b_A RND3/RHOE small GTP-bin 81.5 0.58 2E-05 41.8 2.0 24 34-57 6-29 (184)
361 3te6_A Regulatory protein SIR3 81.5 0.47 1.6E-05 47.5 1.6 29 32-60 42-70 (318)
362 1ky3_A GTP-binding protein YPT 81.5 0.61 2.1E-05 40.9 2.1 24 34-57 7-30 (182)
363 1u0j_A DNA replication protein 81.5 0.54 1.9E-05 45.9 1.9 28 35-62 104-131 (267)
364 2cvh_A DNA repair and recombin 81.5 0.67 2.3E-05 42.5 2.5 25 33-57 18-42 (220)
365 3umf_A Adenylate kinase; rossm 81.4 1.4 4.8E-05 41.5 4.7 55 146-201 163-217 (217)
366 1wms_A RAB-9, RAB9, RAS-relate 81.4 0.59 2E-05 41.0 2.0 23 35-57 7-29 (177)
367 2f9l_A RAB11B, member RAS onco 81.3 0.63 2.2E-05 42.2 2.3 24 35-58 5-28 (199)
368 1m2o_B GTP-binding protein SAR 81.3 0.57 2E-05 42.3 1.9 25 33-57 21-45 (190)
369 2b6h_A ADP-ribosylation factor 81.3 0.73 2.5E-05 41.6 2.7 24 33-56 27-50 (192)
370 2g6b_A RAS-related protein RAB 81.3 0.6 2E-05 41.1 2.0 24 34-57 9-32 (180)
371 1r8s_A ADP-ribosylation factor 81.2 0.62 2.1E-05 40.2 2.1 21 37-57 2-22 (164)
372 2fn4_A P23, RAS-related protei 81.2 0.63 2.1E-05 40.8 2.1 25 34-58 8-32 (181)
373 1z0j_A RAB-22, RAS-related pro 81.1 0.66 2.3E-05 40.2 2.2 23 35-57 6-28 (170)
374 1svm_A Large T antigen; AAA+ f 81.0 0.74 2.5E-05 47.3 2.8 29 32-60 166-194 (377)
375 1sxj_C Activator 1 40 kDa subu 81.0 0.6 2.1E-05 46.6 2.1 23 38-60 49-71 (340)
376 1z0f_A RAB14, member RAS oncog 80.9 0.69 2.3E-05 40.4 2.3 23 35-57 15-37 (179)
377 4gzl_A RAS-related C3 botulinu 80.9 0.67 2.3E-05 42.3 2.2 26 32-57 27-52 (204)
378 3cwq_A Para family chromosome 80.9 0.97 3.3E-05 41.9 3.4 37 36-73 2-38 (209)
379 2y8e_A RAB-protein 6, GH09086P 80.9 0.58 2E-05 41.0 1.7 23 35-57 14-36 (179)
380 1htw_A HI0065; nucleotide-bind 80.8 0.68 2.3E-05 41.3 2.2 27 33-59 31-57 (158)
381 1g3q_A MIND ATPase, cell divis 80.8 0.96 3.3E-05 42.1 3.4 40 35-74 3-42 (237)
382 3vfd_A Spastin; ATPase, microt 80.8 0.55 1.9E-05 47.9 1.8 27 34-60 147-173 (389)
383 4a74_A DNA repair and recombin 80.6 0.64 2.2E-05 42.9 2.1 26 34-59 24-49 (231)
384 3ice_A Transcription terminati 80.6 3.2 0.00011 42.9 7.4 35 32-66 171-205 (422)
385 2oil_A CATX-8, RAS-related pro 80.6 0.64 2.2E-05 41.7 2.0 24 34-57 24-47 (193)
386 1zj6_A ADP-ribosylation factor 80.6 0.72 2.5E-05 41.1 2.3 25 33-57 14-38 (187)
387 2cjw_A GTP-binding protein GEM 80.6 0.67 2.3E-05 42.0 2.1 23 35-57 6-28 (192)
388 2efe_B Small GTP-binding prote 80.6 0.64 2.2E-05 40.9 2.0 23 35-57 12-34 (181)
389 3end_A Light-independent proto 80.4 0.96 3.3E-05 44.3 3.3 38 35-73 42-79 (307)
390 2iwr_A Centaurin gamma 1; ANK 80.4 0.52 1.8E-05 41.5 1.3 24 34-57 6-29 (178)
391 3ihw_A Centg3; RAS, centaurin, 80.3 0.73 2.5E-05 41.4 2.3 25 33-57 18-42 (184)
392 2gf0_A GTP-binding protein DI- 80.3 0.8 2.7E-05 41.0 2.5 24 34-57 7-30 (199)
393 3k9g_A PF-32 protein; ssgcid, 80.2 0.82 2.8E-05 43.7 2.7 41 33-74 26-66 (267)
394 3c5c_A RAS-like protein 12; GD 80.2 0.71 2.4E-05 41.5 2.1 25 33-57 19-43 (187)
395 3iqw_A Tail-anchored protein t 80.2 1.1 3.7E-05 45.2 3.7 40 33-72 14-53 (334)
396 3kjh_A CO dehydrogenase/acetyl 80.1 0.65 2.2E-05 43.4 1.9 36 38-73 3-38 (254)
397 2a9k_A RAS-related protein RAL 80.0 0.67 2.3E-05 40.9 1.9 23 35-57 18-40 (187)
398 2atv_A RERG, RAS-like estrogen 80.0 0.78 2.7E-05 41.3 2.3 25 33-57 26-50 (196)
399 1fzq_A ADP-ribosylation factor 80.0 0.67 2.3E-05 41.4 1.9 25 33-57 14-38 (181)
400 3cbq_A GTP-binding protein REM 79.9 0.59 2E-05 42.5 1.5 23 34-56 22-44 (195)
401 2eyu_A Twitching motility prot 79.9 0.78 2.7E-05 44.4 2.4 31 32-62 22-52 (261)
402 3q9l_A Septum site-determining 79.9 1 3.5E-05 42.6 3.2 39 35-73 3-41 (260)
403 1mh1_A RAC1; GTP-binding, GTPa 79.8 0.72 2.5E-05 40.7 2.0 23 35-57 5-27 (186)
404 3nbx_X ATPase RAVA; AAA+ ATPas 79.7 0.54 1.8E-05 50.2 1.3 25 36-60 42-66 (500)
405 2bme_A RAB4A, RAS-related prot 79.7 0.69 2.4E-05 40.9 1.9 23 35-57 10-32 (186)
406 3bwd_D RAC-like GTP-binding pr 79.7 0.82 2.8E-05 40.2 2.3 24 34-57 7-30 (182)
407 3t5g_A GTP-binding protein RHE 79.6 0.66 2.3E-05 40.9 1.7 22 35-56 6-27 (181)
408 1pui_A ENGB, probable GTP-bind 79.6 0.58 2E-05 42.6 1.3 26 33-58 24-49 (210)
409 1ksh_A ARF-like protein 2; sma 79.5 0.75 2.6E-05 40.8 2.1 25 33-57 16-40 (186)
410 1zd9_A ADP-ribosylation factor 79.4 0.74 2.5E-05 41.2 2.0 25 33-57 20-44 (188)
411 3pvs_A Replication-associated 79.4 0.68 2.3E-05 48.5 2.0 25 36-60 51-75 (447)
412 1x3s_A RAS-related protein RAB 79.3 0.75 2.6E-05 41.0 2.0 23 35-57 15-37 (195)
413 2r2a_A Uncharacterized protein 79.2 0.76 2.6E-05 42.7 2.0 23 35-57 5-27 (199)
414 3tw8_B RAS-related protein RAB 79.1 0.75 2.6E-05 40.3 1.9 24 34-57 8-31 (181)
415 2zan_A Vacuolar protein sortin 79.1 0.79 2.7E-05 47.9 2.4 26 34-59 166-191 (444)
416 3kkq_A RAS-related protein M-R 79.1 0.82 2.8E-05 40.4 2.2 24 34-57 17-40 (183)
417 3reg_A RHO-like small GTPase; 79.0 0.77 2.6E-05 41.2 2.0 24 34-57 22-45 (194)
418 3lxw_A GTPase IMAP family memb 79.0 0.75 2.6E-05 43.9 2.0 25 33-57 19-43 (247)
419 3g5u_A MCG1178, multidrug resi 79.0 6.3 0.00022 46.8 10.3 27 34-60 1058-1084(1284)
420 2fu5_C RAS-related protein RAB 78.9 0.75 2.6E-05 40.7 1.9 23 35-57 8-30 (183)
421 1z06_A RAS-related protein RAB 78.9 0.78 2.7E-05 41.0 2.0 24 34-57 19-42 (189)
422 2ph1_A Nucleotide-binding prot 78.9 1.2 4.3E-05 42.5 3.5 42 34-75 18-59 (262)
423 1moz_A ARL1, ADP-ribosylation 78.9 0.65 2.2E-05 41.0 1.4 24 33-56 16-39 (183)
424 3tkl_A RAS-related protein RAB 78.8 0.79 2.7E-05 40.9 2.0 24 34-57 15-38 (196)
425 3pxg_A Negative regulator of g 78.8 1 3.4E-05 47.4 3.1 28 33-60 199-226 (468)
426 3d31_A Sulfate/molybdate ABC t 78.8 6.4 0.00022 39.7 8.9 29 33-61 24-52 (348)
427 2atx_A Small GTP binding prote 78.7 0.65 2.2E-05 41.6 1.4 25 34-58 17-41 (194)
428 2ehv_A Hypothetical protein PH 78.7 0.76 2.6E-05 43.0 1.9 26 33-58 28-53 (251)
429 3t1o_A Gliding protein MGLA; G 78.7 0.88 3E-05 40.5 2.3 23 35-57 14-36 (198)
430 2b8t_A Thymidine kinase; deoxy 78.7 1.3 4.4E-05 42.0 3.5 38 35-72 12-49 (223)
431 3oes_A GTPase rhebl1; small GT 78.5 0.78 2.7E-05 41.6 1.9 24 34-57 23-46 (201)
432 1jr3_A DNA polymerase III subu 78.5 0.8 2.7E-05 45.7 2.1 29 33-61 36-64 (373)
433 3ea0_A ATPase, para family; al 78.4 1.3 4.4E-05 41.4 3.5 41 34-74 4-45 (245)
434 2p5s_A RAS and EF-hand domain 78.4 0.94 3.2E-05 41.0 2.4 25 33-57 26-50 (199)
435 3pxi_A Negative regulator of g 78.3 1.1 3.6E-05 50.1 3.3 39 37-75 523-561 (758)
436 2gf9_A RAS-related protein RAB 78.3 0.92 3.2E-05 40.5 2.3 23 35-57 22-44 (189)
437 3m6a_A ATP-dependent protease 78.2 0.86 2.9E-05 49.0 2.4 27 35-61 108-134 (543)
438 3bk7_A ABC transporter ATP-bin 78.2 8.1 0.00028 42.0 10.1 27 35-61 382-408 (607)
439 2fv8_A H6, RHO-related GTP-bin 78.2 0.8 2.7E-05 41.8 1.8 25 33-57 23-47 (207)
440 1gwn_A RHO-related GTP-binding 78.1 0.86 2.9E-05 41.9 2.0 24 34-57 27-50 (205)
441 1f6b_A SAR1; gtpases, N-termin 78.1 0.66 2.3E-05 42.2 1.2 25 33-57 23-47 (198)
442 2cxx_A Probable GTP-binding pr 78.0 0.79 2.7E-05 40.6 1.7 21 37-57 3-23 (190)
443 1vg8_A RAS-related protein RAB 78.0 0.91 3.1E-05 41.0 2.1 24 34-57 7-30 (207)
444 1zbd_A Rabphilin-3A; G protein 77.9 0.91 3.1E-05 41.0 2.1 23 35-57 8-30 (203)
445 1hyq_A MIND, cell division inh 77.9 1.3 4.4E-05 42.1 3.3 40 35-74 3-42 (263)
446 1sxj_E Activator 1 40 kDa subu 77.8 0.94 3.2E-05 45.0 2.4 25 34-59 36-60 (354)
447 3bfv_A CAPA1, CAPB2, membrane 77.8 1.5 5.2E-05 42.5 3.8 42 34-75 82-123 (271)
448 2fg5_A RAB-22B, RAS-related pr 77.7 0.85 2.9E-05 41.0 1.8 24 34-57 22-45 (192)
449 3zvl_A Bifunctional polynucleo 77.7 3.8 0.00013 42.3 7.0 38 32-69 255-292 (416)
450 3dz8_A RAS-related protein RAB 77.7 0.97 3.3E-05 40.5 2.2 24 34-57 22-45 (191)
451 2a5j_A RAS-related protein RAB 77.6 0.9 3.1E-05 40.7 2.0 23 35-57 21-43 (191)
452 2bov_A RAla, RAS-related prote 77.6 0.9 3.1E-05 40.9 2.0 24 34-57 13-36 (206)
453 1n0w_A DNA repair protein RAD5 77.6 0.86 3E-05 42.4 1.9 26 33-58 22-47 (243)
454 2q3h_A RAS homolog gene family 77.5 0.98 3.4E-05 40.7 2.2 25 33-57 18-42 (201)
455 2woj_A ATPase GET3; tail-ancho 77.5 1.3 4.6E-05 44.8 3.4 41 33-73 16-58 (354)
456 2il1_A RAB12; G-protein, GDP, 77.4 0.84 2.9E-05 41.1 1.7 23 35-57 26-48 (192)
457 1s96_A Guanylate kinase, GMP k 77.4 0.99 3.4E-05 42.5 2.3 29 32-60 13-41 (219)
458 4bas_A ADP-ribosylation factor 77.4 0.78 2.7E-05 41.1 1.5 25 33-57 15-39 (199)
459 1lw7_A Transcriptional regulat 77.3 0.77 2.6E-05 46.5 1.6 26 35-60 170-195 (365)
460 1g5t_A COB(I)alamin adenosyltr 77.2 12 0.00042 34.5 9.6 64 153-216 101-169 (196)
461 2hup_A RAS-related protein RAB 77.2 0.97 3.3E-05 41.1 2.1 23 35-57 29-51 (201)
462 3rhf_A Putative polyphosphate 77.2 2.6 9E-05 41.4 5.3 37 34-70 74-110 (289)
463 3cph_A RAS-related protein SEC 77.1 1.1 3.7E-05 40.7 2.4 24 34-57 19-42 (213)
464 3ozx_A RNAse L inhibitor; ATP 77.1 4.4 0.00015 43.4 7.5 27 35-61 294-320 (538)
465 2ew1_A RAS-related protein RAB 77.1 0.99 3.4E-05 41.3 2.1 23 35-57 26-48 (201)
466 2g3y_A GTP-binding protein GEM 77.0 0.98 3.3E-05 42.1 2.1 22 35-56 37-58 (211)
467 2chq_A Replication factor C sm 77.0 0.96 3.3E-05 43.9 2.1 23 38-60 41-63 (319)
468 3q3j_B RHO-related GTP-binding 77.0 1.1 3.7E-05 41.4 2.4 25 33-57 25-49 (214)
469 3gd7_A Fusion complex of cysti 76.8 3.9 0.00013 42.0 6.8 28 33-60 45-72 (390)
470 2dhr_A FTSH; AAA+ protein, hex 76.7 0.9 3.1E-05 48.4 2.0 26 35-60 64-89 (499)
471 2qu8_A Putative nucleolar GTP- 76.5 1.1 3.6E-05 41.8 2.2 24 34-57 28-51 (228)
472 2gco_A H9, RHO-related GTP-bin 76.5 0.96 3.3E-05 41.0 1.9 24 34-57 24-47 (201)
473 2j1l_A RHO-related GTP-binding 76.4 0.92 3.1E-05 41.7 1.7 24 34-57 33-56 (214)
474 2h57_A ADP-ribosylation factor 76.2 0.82 2.8E-05 40.9 1.3 26 33-58 19-44 (190)
475 2f7s_A C25KG, RAS-related prot 76.1 1.1 3.7E-05 41.0 2.1 24 34-57 24-47 (217)
476 2o52_A RAS-related protein RAB 76.1 0.96 3.3E-05 41.1 1.7 25 33-57 23-47 (200)
477 2bcg_Y Protein YP2, GTP-bindin 76.1 1.1 3.7E-05 40.6 2.1 23 35-57 8-30 (206)
478 2afh_E Nitrogenase iron protei 76.0 1.4 4.9E-05 42.6 3.1 39 35-74 3-41 (289)
479 2ewv_A Twitching motility prot 76.0 1.2 3.9E-05 45.6 2.5 30 33-62 134-163 (372)
480 3b1v_A Ferrous iron uptake tra 75.9 1.1 3.8E-05 43.6 2.2 23 35-57 3-25 (272)
481 2c78_A Elongation factor TU-A; 75.9 7.3 0.00025 39.8 8.6 27 34-60 10-36 (405)
482 1byi_A Dethiobiotin synthase; 75.9 1.6 5.6E-05 40.2 3.3 35 35-69 2-36 (224)
483 1sxj_B Activator 1 37 kDa subu 75.9 1.1 3.7E-05 43.6 2.1 25 35-60 43-67 (323)
484 1c9k_A COBU, adenosylcobinamid 75.8 0.83 2.8E-05 41.9 1.2 21 38-58 2-22 (180)
485 2oze_A ORF delta'; para, walke 75.8 1.7 5.8E-05 42.2 3.5 43 33-75 33-77 (298)
486 3j16_B RLI1P; ribosome recycli 75.8 19 0.00064 39.2 12.1 157 13-206 70-278 (608)
487 3cio_A ETK, tyrosine-protein k 75.8 1.9 6.6E-05 42.4 4.0 42 34-75 104-145 (299)
488 2j0v_A RAC-like GTP-binding pr 75.3 1.2 4.1E-05 40.6 2.2 24 34-57 8-31 (212)
489 1wcv_1 SOJ, segregation protei 75.1 1.2 4.2E-05 42.3 2.3 40 34-73 6-45 (257)
490 2xtp_A GTPase IMAP family memb 75.0 1.2 4.1E-05 42.3 2.2 25 33-57 20-44 (260)
491 3l0i_B RAS-related protein RAB 74.9 1 3.5E-05 40.7 1.6 23 34-56 32-54 (199)
492 3io3_A DEHA2D07832P; chaperone 74.8 1.8 6.2E-05 43.8 3.5 40 33-72 16-57 (348)
493 2x77_A ADP-ribosylation factor 74.8 1 3.4E-05 40.2 1.5 24 33-56 20-43 (189)
494 1w5s_A Origin recognition comp 74.7 1.3 4.5E-05 44.7 2.5 28 34-61 49-78 (412)
495 2dy1_A Elongation factor G; tr 74.6 3.7 0.00013 45.2 6.3 40 170-210 98-137 (665)
496 3pxi_A Negative regulator of g 74.6 1.3 4.3E-05 49.5 2.5 28 33-60 199-226 (758)
497 4dcu_A GTP-binding protein ENG 74.6 2.2 7.4E-05 44.6 4.2 40 170-210 278-317 (456)
498 1nlf_A Regulatory protein REPA 74.6 1.3 4.3E-05 42.9 2.2 27 34-60 29-55 (279)
499 3b85_A Phosphate starvation-in 74.5 1.5 5.2E-05 40.9 2.7 28 34-62 21-48 (208)
500 3hu3_A Transitional endoplasmi 74.4 1.3 4.6E-05 46.9 2.5 28 33-60 236-263 (489)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=1.5e-76 Score=642.70 Aligned_cols=410 Identities=42% Similarity=0.777 Sum_probs=381.0
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
....|.+|+|+|+||+||||+|++|+++|+|.++++.+|+.|.+|+.+.+.
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~----------------------------- 81 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQ----------------------------- 81 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSC-----------------------------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccC-----------------------------
Confidence 356789999999999999999999999999999999999999999887761
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCcEEEEcCCChhHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l-~~~g~~~i~Datn~~~~~R~~ 189 (512)
....++|++.+..+...|++++..++.++..+| ++.|.++|+||||.++++|+.
T Consensus 82 -------------------------~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~ 136 (520)
T 2axn_A 82 -------------------------YSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHM 136 (520)
T ss_dssp -------------------------CCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHH
T ss_pred -------------------------CccccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHH
Confidence 123468998888888888999999999999999 578999999999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecccC----CcceEEE
Q psy673 190 IHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTED----HLSYMQI 265 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~~----e~~yik~ 265 (512)
+.+ ++++.|++++|||+.|+|++++++|+++++...|+|.+.+++++.++|.+|++.|++.|||++++ +++|||+
T Consensus 137 ~~~-~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~Yepi~~ee~~~dl~yik~ 215 (520)
T 2axn_A 137 ILH-FAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKV 215 (520)
T ss_dssp HHH-HHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHHHHHHTTCCCCCTTTTTTTSEEEEE
T ss_pred HHH-HHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHHHHhhhhhhcccChhhcccCcceEEE
Confidence 999 89999999999999999999999999877878899999999999999999999999999999943 4999999
Q ss_pred EecCceeEeccCCCccccchhhhccccCcCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcE
Q psy673 266 YNVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLR 345 (512)
Q Consensus 266 ~n~g~~~~~~~~~g~l~s~i~~fLmn~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~ 345 (512)
+|+|+++++|+++|||+++|||||||+|+++++||||||||+++|..++++||+|||+.|++||+.++++|...+++++.
T Consensus 216 id~g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~gD~pLt~~G~~qA~~l~~~L~~~~~~~~~ 295 (520)
T 2axn_A 216 IDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLR 295 (520)
T ss_dssp ETTTTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCSSCCCBCHHHHHHHHHHHHHHHHHCCSCCE
T ss_pred EcCccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccCCCcccCHHHHHHHHHHHHHHHhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877789
Q ss_pred EEeCcHHHHHHHHhHcccCcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy673 346 IWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIIL 425 (512)
Q Consensus 346 V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~ 425 (512)
|||||+.||+|||+.+..++..++.|+|+++|.|+|++++++.+.||+.|..|..|++.+++|+|||+.++..|+.+++.
T Consensus 296 v~sSpl~Ra~qTA~~i~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~ 375 (520)
T 2axn_A 296 VWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIM 375 (520)
T ss_dssp EEECSSHHHHHHHHTTTSCEEECGGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCTTTCCCTTSCCHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHhCCCcEEccccccccCCcccCCcHHHHHHHCHHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999996688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe--CCEEEEEe-ccCCCCCcccCCCCC
Q psy673 426 KIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR--NMTLELIF-PHHSTGTLRPQPFGH 496 (512)
Q Consensus 426 el~~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~--~~~~~~i~-~~~~~~~~~~~p~~~ 496 (512)
++.+. ++||||||+++|++++++++|.+.+.++. .+|+++|++|.+. |+.++++. +.+++++|+++|...
T Consensus 376 ~l~~~-~~vlvVsH~~~ir~ll~~ll~~~~~~~~~l~~p~~sv~~l~~~~~g~~~~~~~ln~~~~~~~~~~~~~~ 449 (520)
T 2axn_A 376 ELERQ-ENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDA 449 (520)
T ss_dssp HHHHC-SSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEEETTEEEEEEEECSCCCCCCCCCCC---
T ss_pred HHhCC-CcEEEEEChHHHHHHHHHHhCCCHHHhhccCCCCCeEEEEEEcCCCceEEEEECCCccccccCCCcccc
Confidence 99876 78999999999999999999999999999 9999999999986 77888888 999999999999743
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=5.8e-74 Score=616.19 Aligned_cols=409 Identities=42% Similarity=0.738 Sum_probs=379.6
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
....|.+|+|+|+||+||||++++|+++|+|.+++++.|+.+.+|+.+.+.
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~----------------------------- 85 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT----------------------------- 85 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCS-----------------------------
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccC-----------------------------
Confidence 346688999999999999999999999999999999999999999876651
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCcEEEEcCCChhHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l-~~~g~~~i~Datn~~~~~R~~ 189 (512)
....++||..+..+.+.|+..+..++.++..++ ..+|.++|+|+||.++++|+.
T Consensus 86 -------------------------~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~ 140 (469)
T 1bif_A 86 -------------------------YKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAM 140 (469)
T ss_dssp -------------------------CCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHH
T ss_pred -------------------------CCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHH
Confidence 233458999888777889898888998888888 678999999999999999999
Q ss_pred HHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceeccc---CCcceEEEE
Q psy673 190 IHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTE---DHLSYMQIY 266 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~---~e~~yik~~ 266 (512)
+++ ++++.++.++|||+.|++++++.+|+.+++...|||.+.+++++..+|.+|+..|++.|||+++ ++++|||++
T Consensus 141 ~~~-~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~~~R~~~y~~~ye~l~~~~~~~~~~ik~~ 219 (469)
T 1bif_A 141 IFN-FGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIM 219 (469)
T ss_dssp HHH-HHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHHHHHHHHHHTTCCCCCTTTTTTSCEEEEE
T ss_pred HHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHhccEeEECCccccCCcceEEEE
Confidence 999 7999999999999999999999999988777789999999999999999999999999999984 579999999
Q ss_pred ecCceeEeccCCCccccchhhhccccCcCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEE
Q psy673 267 NVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRI 346 (512)
Q Consensus 267 n~g~~~~~~~~~g~l~s~i~~fLmn~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V 346 (512)
|+|+++++|+++|||+++|||||||+|+++++||||||||+++|..++++||+|||+.|++||+.++++|...+++++.|
T Consensus 220 d~~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~gD~~Lt~~G~~qA~~l~~~l~~~~~~~~~v 299 (469)
T 1bif_A 220 DVGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKV 299 (469)
T ss_dssp TTTTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSSCCCBCHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred cCccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777899
Q ss_pred EeCcHHHHHHHHhHcccCcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy673 347 WTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILK 426 (512)
Q Consensus 347 ~tSpl~RaiqTA~~i~~~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~e 426 (512)
||||+.||+|||+.+..++..++.|+|+++|.|+|++++++.+.+|+.+..|..|++.+++|+|||+.++..|+.+++.+
T Consensus 300 ~sSpl~Ra~qTA~~l~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~ 379 (469)
T 1bif_A 300 FTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIME 379 (469)
T ss_dssp EECSSHHHHHHHTTSSSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCTTTCCCTTCCCHHHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHhCCCceECcccccccCCccCCCCHHHHHHHCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999866888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe--CCEEEEEe-ccCCCCCcccCCCC
Q psy673 427 IEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR--NMTLELIF-PHHSTGTLRPQPFG 495 (512)
Q Consensus 427 l~~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~--~~~~~~i~-~~~~~~~~~~~p~~ 495 (512)
+.+. ++|||||||++|++++++++|.+.+.++. ++|+++|++|++. ++.++.++ .++.++++++.|++
T Consensus 380 l~~~-~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 451 (469)
T 1bif_A 380 LERQ-ENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAVNTHRDRPQN 451 (469)
T ss_dssp HHHC-SSEEEEECHHHHHHHHHHHTTCCTTTGGGCCCCTTEEEEEEECSSSEEEEEEECSCCCCCCCCCCCSC
T ss_pred HHcC-CeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCEEEEEEEeCCCCceEEEecCchhhhhhccCCcc
Confidence 9764 68999999999999999999999999999 9999999999998 67888888 77999999999973
No 3
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.4e-35 Score=279.44 Aligned_cols=187 Identities=18% Similarity=0.178 Sum_probs=164.5
Q ss_pred ccccCcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCc-
Q psy673 289 LMHLNITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSH- 365 (512)
Q Consensus 289 Lmn~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~- 365 (512)
|||++..+++||||||||+.+|..++++| |+|||+.|++||+.++++|...++.++.|||||+.||+|||+.+..++
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~~~~~~~ 82 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSPRRRTLDTAKLAGLTVN 82 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTTCCSSCEEEECSSHHHHHHHHHTTCCCS
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHhCCCce
Confidence 57777778899999999999999888877 999999999999999999998877567999999999999999965577
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVL 443 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vi 443 (512)
..++.|+|+++|.|+|++.+++.+.+|+ |..|..++ |+|||+.++..|+..++.++.. .+++|||||||++|
T Consensus 83 ~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i 156 (208)
T 2a6p_A 83 EVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHGHFS 156 (208)
T ss_dssp EECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECHHHH
T ss_pred eeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCHHHH
Confidence 8899999999999999999999999998 77787764 8999999999999999999964 46799999999999
Q ss_pred HHHHHHhhCCCchhhcc-cCCCceEEEEEEeCCEEEEEe
Q psy673 444 RCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNMTLELIF 481 (512)
Q Consensus 444 r~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~~~i~ 481 (512)
++++++++|.+....+. .+++++++.|++++..+.+..
T Consensus 157 ~~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~~~~l~~ 195 (208)
T 2a6p_A 157 RAVITRWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAV 195 (208)
T ss_dssp HHHHHHHTTCCGGGGGGBCCCTTEEEEEEEETTEEEEEE
T ss_pred HHHHHHHhCCCHHHhhhccCCCCEEEEEEEeCCceEEEE
Confidence 99999999999888887 999999999999976665443
No 4
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=100.00 E-value=1.1e-34 Score=278.27 Aligned_cols=183 Identities=26% Similarity=0.302 Sum_probs=167.6
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Ccccccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKEYKA 370 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~~~~ 370 (512)
|+||||||||+.+|..++++| |+|||+.|++||+.+++.|.... ++.|||||+.||+|||+.+.. ++.+++.
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 79 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVE--LAAIYTSTSGRALETAEIVRGGRLIPIYQDER 79 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTTTSC--CSEEEECSSHHHHHHHHHHHTTCSCCEEECGG
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHcCCC--CCEEEECccHHHHHHHHHHHhcCCCCeEECcc
Confidence 589999999999999888888 99999999999999999998754 459999999999999999975 6778899
Q ss_pred cccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh--CCCeEEEEeChHHHHHHHH
Q psy673 371 LDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH--SKSNLLIVSHPAVLRCLLG 448 (512)
Q Consensus 371 L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~--~~~~vlIVsH~~vir~ll~ 448 (512)
|+|+++|.|+|++.+++.+.+|+.|..|..++..+.+|+|||+.++..|+..++.++.. .+++|||||||++|+++++
T Consensus 80 L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i~~l~~ 159 (207)
T 1h2e_A 80 LREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMA 159 (207)
T ss_dssp GSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred cccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999964 3579999999999999999
Q ss_pred HhhCCCchhhcc-c-CCCceEEEEEEeCCEEEEEe
Q psy673 449 YFQEEPPDRFAY-K-VRKKTHFLLSSRNMTLELIF 481 (512)
Q Consensus 449 ~l~g~~~~~~~~-~-ip~~sv~~l~~~~~~~~~i~ 481 (512)
+++|.+....+. . +++++++.++..++.|.+..
T Consensus 160 ~l~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~l~~ 194 (207)
T 1h2e_A 160 AFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAV 194 (207)
T ss_dssp HHTTCCGGGTTCSCCCCTTCEEEEEEETTEEEEEE
T ss_pred HHhCCCHHHhhhccCCCCCEEEEEEEECCEEEEEE
Confidence 999999888877 7 99999999999876665544
No 5
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=100.00 E-value=9e-35 Score=279.35 Aligned_cols=184 Identities=20% Similarity=0.162 Sum_probs=166.1
Q ss_pred cccCcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----
Q psy673 290 MHLNITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG---- 363 (512)
Q Consensus 290 mn~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~---- 363 (512)
||.+.++++||||||||+.+|..++++| |+|||+.|++||+.++++|...+.+++.|||||+.||+|||+.+..
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~ 80 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGE 80 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHHTCCCSEEEEESSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHhcCC
Confidence 7888999999999999999999888887 9999999999999999999987666779999999999999999864
Q ss_pred ---CcccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh----CCCeEE
Q psy673 364 ---SHKEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----SKSNLL 435 (512)
Q Consensus 364 ---~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~----~~~~vl 435 (512)
++..++.|+|+++|.|+|++.+++.+.+|.. +..|..++ .+.+|+|||+.++..|+..++.++.. .+++||
T Consensus 81 ~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vl 159 (211)
T 1fzt_A 81 PNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVL 159 (211)
T ss_dssp TTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHTTHHHHTCCEE
T ss_pred CCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHhhhhcCCCeEE
Confidence 4667999999999999999999999999975 66676665 78899999999999999999999842 467999
Q ss_pred EEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 436 IVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 436 IVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
|||||++|++++++++|.+....+. .+++++++.+++++
T Consensus 160 vVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~i~~l~~~~ 199 (211)
T 1fzt_A 160 IAAHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDK 199 (211)
T ss_dssp EESCHHHHHHHHHHHHTCCTTTSSSCCCCBSSCEEEEBCS
T ss_pred EEeChHHHHHHHHHHhCCCHHHHHhcCCCCCcEEEEEEcC
Confidence 9999999999999999999888877 99999999998764
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=100.00 E-value=4.7e-33 Score=275.16 Aligned_cols=183 Identities=20% Similarity=0.211 Sum_probs=160.8
Q ss_pred cCcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc------
Q psy673 292 LNITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG------ 363 (512)
Q Consensus 292 ~~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~------ 363 (512)
-++.+++||||||||+.+|..++++| |+|||+.|++||+.++++|.+.+..++.|||||+.||+|||+.+..
T Consensus 7 ~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 86 (258)
T 3kkk_A 7 HHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLH 86 (258)
T ss_dssp ---CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred cccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECchHHHHHHHHHHHHhcCCCC
Confidence 35678999999999999999999988 9999999999999999999987777789999999999999999864
Q ss_pred -CcccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcC-------------------CC-----CCCCCCCCCHHHHH
Q psy673 364 -SHKEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD-------------------KF-----YNRWPQGECYKDVL 417 (512)
Q Consensus 364 -~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d-------------------~~-----~~~~p~gES~~d~~ 417 (512)
++..++.|+|+++|.|+|++.+++.+.||+. +..|..+ +. .+++|+|||+.++.
T Consensus 87 ~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~ 166 (258)
T 3kkk_A 87 VPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTV 166 (258)
T ss_dssp SCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHHHHH
T ss_pred CCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHHHHH
Confidence 5778899999999999999999999999986 4445432 11 12478999999999
Q ss_pred HHHHHHHHHh-H---hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 418 TRLELIILKI-E---HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 418 ~Rv~~~i~el-~---~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
.|+..++.++ . ..+++|||||||++|++++++++|.+.+.++. .+++|+++.|++++
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 228 (258)
T 3kkk_A 167 ERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYELDE 228 (258)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHhhhccCCCEEEEEcCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECC
Confidence 9999999996 2 35789999999999999999999999999888 99999999999984
No 7
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=100.00 E-value=6.9e-33 Score=273.98 Aligned_cols=182 Identities=20% Similarity=0.210 Sum_probs=160.6
Q ss_pred CcCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------
Q psy673 293 NITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG------- 363 (512)
Q Consensus 293 ~~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~------- 363 (512)
|..|.+.||||||||++|..++++| |+|||+.|++||+.++++|...+.+++.|||||+.||+|||+.+..
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 85 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYV 85 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHHTCTTS
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeCChHHHHHHHHHHHHhcCCCCC
Confidence 4457899999999999999999998 9999999999999999999987777779999999999999999864
Q ss_pred CcccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCC------------------------CCCCCCCCCHHHHHH
Q psy673 364 SHKEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKF------------------------YNRWPQGECYKDVLT 418 (512)
Q Consensus 364 ~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~------------------------~~~~p~gES~~d~~~ 418 (512)
++.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .+++|+|||+.++..
T Consensus 86 ~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 165 (257)
T 3gp3_A 86 PVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVA 165 (257)
T ss_dssp CEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHHHH
T ss_pred ceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 5778899999999999999999999999986 455554311 135789999999999
Q ss_pred HHHHHHHHhH----hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 419 RLELIILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 419 Rv~~~i~el~----~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
|+..++.++. ..+++|||||||++|++++++++|.+.+..+. .+++++++.|++++
T Consensus 166 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~ 226 (257)
T 3gp3_A 166 RVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDE 226 (257)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCTTGGGGCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCcHHHHHHHHHHhCCCHHHHhhccCCCCeeEEEEECC
Confidence 9999999984 35789999999999999999999999999988 99999999999983
No 8
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=100.00 E-value=7.5e-33 Score=272.44 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=157.9
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++||||||||+.+|..++++| |+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++.
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 81 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVE 81 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHHTCTTSCEE
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhcCCCCcEEEECCcHHHHHHHHHHHHhcCCCCCCee
Confidence 5799999999999999998888 9999999999999999999987667779999999999999999864 566
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCC-------------------C-----CCCCCCCCCHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADK-------------------F-----YNRWPQGECYKDVLTRLE 421 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~-------------------~-----~~~~p~gES~~d~~~Rv~ 421 (512)
.++.|+|+++|.|+|++.+++.+.+|.. +..|..+. . ...+|+|||+.++..|+.
T Consensus 82 ~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~ 161 (249)
T 1e58_A 82 KSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVI 161 (249)
T ss_dssp ECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHHHH
T ss_pred eCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999875 45554321 1 135689999999999999
Q ss_pred HHHHH-hHh---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 422 LIILK-IEH---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 422 ~~i~e-l~~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
.++.+ |.. .+++|||||||++|++++++++|.+.+.++. .+++++++.+++++
T Consensus 162 ~~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~n~~~~~l~~~~ 219 (249)
T 1e58_A 162 PYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDE 219 (249)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCTTCCEEEEECT
T ss_pred HHHHHHHHhhccCCCEEEEEcChHHHHHHHHHHhCCCHHHHhhccCCCceeEEEEECC
Confidence 99999 642 5679999999999999999999999988888 99999999999874
No 9
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.5e-32 Score=264.77 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=157.2
Q ss_pred cCCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Cccc
Q psy673 294 ITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SHKE 367 (512)
Q Consensus 294 ~~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~~~ 367 (512)
+++++||||||||+.+| ++++| |+|||+.|++||+.+++.|. .+++.|||||+.||+|||+.+.. ++.+
T Consensus 3 m~~~~i~lvRHGet~~n--~~~~g~~D~pLt~~G~~QA~~~~~~l~---~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (213)
T 3hjg_A 3 LKTLNIYLMRHGKVDAA--PGLHGQTDLKVKEAEQQQIAMAWKTKG---YDVAGIISSPLSRCHDLAQILAEQQLLPMTT 77 (213)
T ss_dssp -CEEEEEEEECCCCSSC--SBCCSSSCCCCCHHHHHHHHHHHHHTT---CCCSCEEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CceeEEEEECCCCcCCC--CcccCCCCCCCCHHHHHHHHHHHHhcC---CCCCEEEECChHHHHHHHHHHHhccCCCcEE
Confidence 46789999999999987 45555 99999999999999999882 45669999999999999999975 7889
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh-CCCeEEEEeChHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCL 446 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~-~~~~vlIVsH~~vir~l 446 (512)
++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+.+|+|||+.++..|+..++.++.. ..++|||||||++|+++
T Consensus 78 ~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~vlvVsHg~~i~~l 156 (213)
T 3hjg_A 78 EDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIRII 156 (213)
T ss_dssp CGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHCCSCEEEEECHHHHHHH
T ss_pred ccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHHH
Confidence 99999999999999999999988664 45566788889999999999999999999999954 34899999999999999
Q ss_pred HHHhhCCC---chhhcc-cCCCceEEEEEEe--CCEEEEEe
Q psy673 447 LGYFQEEP---PDRFAY-KVRKKTHFLLSSR--NMTLELIF 481 (512)
Q Consensus 447 l~~l~g~~---~~~~~~-~ip~~sv~~l~~~--~~~~~~i~ 481 (512)
+++++|.+ ...... .+++++|+.|+.. +..|..++
T Consensus 157 ~~~l~g~~~~~~~~~~~~~~~n~si~~l~~~~~~~~~~~l~ 197 (213)
T 3hjg_A 157 LAHVLGVDWRNPQWYSTLAIGNASVTHITITIDDQIYASVR 197 (213)
T ss_dssp HHHHTTCCTTCTHHHHHBCCCTTEEEEEEEEESSSEEEEEC
T ss_pred HHHHhCCCccccchhcccccCCCEEEEEEEeCCCCceEEEE
Confidence 99999988 344445 8999999999886 56676666
No 10
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=100.00 E-value=1.9e-32 Score=272.78 Aligned_cols=181 Identities=21% Similarity=0.215 Sum_probs=158.4
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
.|++||||||||+.+|..++++| |+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++
T Consensus 19 ~M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~i 98 (267)
T 3d8h_A 19 STYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPI 98 (267)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHHTCTTSCE
T ss_pred cceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCe
Confidence 35799999999999999999888 9999999999999999999987677779999999999999999864 56
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCC-------------------C-----CCCCCCCCCHHHHHHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADK-------------------F-----YNRWPQGECYKDVLTRL 420 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~-------------------~-----~~~~p~gES~~d~~~Rv 420 (512)
.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. . .+.+|+|||+.++..|+
T Consensus 99 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv 178 (267)
T 3d8h_A 99 INHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERV 178 (267)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHHH
T ss_pred eECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHHH
Confidence 77899999999999999999999999975 45554321 0 13568999999999999
Q ss_pred HHHHHH-hHh---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 421 ELIILK-IEH---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 421 ~~~i~e-l~~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
..++.+ |.. .+++|||||||++|++++++++|.+...++. .+++++++.|++++.
T Consensus 179 ~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~~v~~l~~~~~ 238 (267)
T 3d8h_A 179 KPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDY 238 (267)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHTTCCCCTTCCEEEEECTT
T ss_pred HHHHHHHHHhhccCCCeEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeEEEEEECCC
Confidence 999999 542 5679999999999999999999999988888 999999999998844
No 11
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=100.00 E-value=1.4e-32 Score=274.57 Aligned_cols=181 Identities=19% Similarity=0.187 Sum_probs=160.8
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
+|++||||||||+.+|..++++| |+|||+.|++||+.+++.|.+.+.+++.|||||+.||+|||+.+.. ++
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~ 105 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISV 105 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHTTCTTSEE
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCe
Confidence 57899999999999999999988 9999999999999999999987777789999999999999999864 46
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCC-------------------C-----CCCCCCCCCHHHHHHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADK-------------------F-----YNRWPQGECYKDVLTRL 420 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~-------------------~-----~~~~p~gES~~d~~~Rv 420 (512)
..++.|+|+++|.|+|++.+++.+.||+. +..|..+. . .+++|+|||+.++..|+
T Consensus 106 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~Rv 185 (274)
T 4emb_A 106 KKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVARV 185 (274)
T ss_dssp EECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHHHH
T ss_pred eECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHHHH
Confidence 78899999999999999999999999976 44554421 1 13578999999999999
Q ss_pred HHHHHHhH----hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCC
Q psy673 421 ELIILKIE----HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNM 475 (512)
Q Consensus 421 ~~~i~el~----~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~ 475 (512)
..++.++. ..+++|||||||++|++++++++|.+.+.++. .+++++++.|++++.
T Consensus 186 ~~~l~~l~~~~~~~~~~vlvVsHg~~i~~ll~~l~g~~~~~~~~~~~~n~sv~~l~~~~~ 245 (274)
T 4emb_A 186 IPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKD 245 (274)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHHCCCCTTCCEEEEECTT
T ss_pred HHHHHHHHhhhhcCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEEcCC
Confidence 99999973 35789999999999999999999999999888 999999999999843
No 12
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=100.00 E-value=1.7e-32 Score=273.06 Aligned_cols=179 Identities=21% Similarity=0.193 Sum_probs=158.0
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|...+..++.|||||+.||+|||+++.. ++
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~v 81 (267)
T 2hhj_A 2 SKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPV 81 (267)
T ss_dssp CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHHTCTTSCE
T ss_pred CceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 45799999999999999999988 9999999999999999999987777789999999999999999863 56
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhc---------------------CCCCC--------CCCCCCCHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRA---------------------DKFYN--------RWPQGECYKD 415 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~---------------------d~~~~--------~~p~gES~~d 415 (512)
..++.|+|+++|.|+|++.+++.+.+|+. +..|.. |+ .| .+|+|||+.+
T Consensus 82 ~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~p~gEs~~~ 160 (267)
T 2hhj_A 82 ESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDR-RYKVCDVPLDQLPRSESLKD 160 (267)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCG-GGTSSSSCGGGSCSSCCHHH
T ss_pred eEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccc-cccccccccCCCCCCCCHHH
Confidence 78999999999999999999999999976 444532 22 22 2689999999
Q ss_pred HHHHHHHHHHH-hHh---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 416 VLTRLELIILK-IEH---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 416 ~~~Rv~~~i~e-l~~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
+..|+..++.+ |.. .+++|||||||++|++++++++|.+.+.++. .+++++++.+++++
T Consensus 161 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~n~s~~~~~~~~ 224 (267)
T 2hhj_A 161 VLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDE 224 (267)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTGGGGCCCCTTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcCcHHHHHHHHHHhCCCHHHhhccccCCCeEEEEEEcC
Confidence 99999999999 743 4689999999999999999999999988888 99999999998873
No 13
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=100.00 E-value=3.1e-32 Score=270.50 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=156.8
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
+|++||||||||+.+|..++++| |+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~v 81 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPV 81 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHHTCCCSEEEECSCHHHHHHHHHHHHHTTCTTSCE
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 36799999999999999999988 9999999999999999999976667779999999999999999864 56
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcC---------------------CCC-----CCCCCCCCHHHHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRAD---------------------KFY-----NRWPQGECYKDVLT 418 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d---------------------~~~-----~~~p~gES~~d~~~ 418 (512)
..++.|+|+++|.|+|++.+++.+.+|+. +..|..+ +.+ ..+|+|||+.++..
T Consensus 82 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~~~ 161 (262)
T 1yfk_A 82 VRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIA 161 (262)
T ss_dssp EECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHHHH
T ss_pred eeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHHHH
Confidence 67899999999999999999999999865 4445432 111 24689999999999
Q ss_pred HHHHHHHHh-H---hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 419 RLELIILKI-E---HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 419 Rv~~~i~el-~---~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
|+..++.++ . ..+++|||||||++|++++++++|.+...++. .+++|+++.+++++
T Consensus 162 Rv~~~l~~li~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (262)
T 1yfk_A 162 RALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDK 222 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCHHHHHTCCCCSSSCEEEEECT
T ss_pred HHHHHHHHHHHhhccCCCeEEEEcChHHHHHHHHHHhCCCHHHHhccCCCCCeEEEEEEcC
Confidence 999999995 2 25679999999999999999999999988888 99999999998874
No 14
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.98 E-value=3.9e-32 Score=265.87 Aligned_cols=178 Identities=22% Similarity=0.247 Sum_probs=155.8
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHKE 367 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~~ 367 (512)
|+||||||||+.+|..++++| |+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++.+
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 80 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNR 80 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhcCCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCeee
Confidence 589999999999999998888 9999999999999999999987667779999999999999999863 5678
Q ss_pred ccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCC------------C------------CCCCCCCCCHHHHHHHHHH
Q psy673 368 YKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADK------------F------------YNRWPQGECYKDVLTRLEL 422 (512)
Q Consensus 368 ~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------~------------~~~~p~gES~~d~~~Rv~~ 422 (512)
++.|+|+++|.|+|++.+++.+.+|+. +..|..+. + ...+|+|||+.++..|+..
T Consensus 81 ~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~ 160 (240)
T 1qhf_A 81 SWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLP 160 (240)
T ss_dssp CGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHHHH
T ss_pred CcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999975 44453321 1 1245899999999999999
Q ss_pred HHHH-hHh---CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 423 IILK-IEH---SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 423 ~i~e-l~~---~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
++.+ +.. .+++|||||||++|++++++++|.+.+..+. .+|+++++.+++++
T Consensus 161 ~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (240)
T 1qhf_A 161 YWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDE 217 (240)
T ss_dssp HHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHHTCCTTTGGGCCCCTTSCEEEEBCT
T ss_pred HHHHHHHhhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHhhcccCCCCeeEEEEEcC
Confidence 9999 642 4678999999999999999999999988888 99999999998873
No 15
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.98 E-value=2.3e-32 Score=272.23 Aligned_cols=179 Identities=22% Similarity=0.258 Sum_probs=157.2
Q ss_pred CcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Ccc
Q psy673 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SHK 366 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~~ 366 (512)
|++||||||||+.+|..++++| |+|||+.|++||+.+++.|.+.+++++.|||||++||+|||+.+.. ++.
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~v~ 83 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVR 83 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSCHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHHcCCCCCCee
Confidence 6799999999999999999988 9999999999999999999987777789999999999999999864 567
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCC------------C------CCC----CCCCCCHHHHHHHHHHH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADK------------F------YNR----WPQGECYKDVLTRLELI 423 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~------------~------~~~----~p~gES~~d~~~Rv~~~ 423 (512)
.++.|+|+++|.|+|++.+++.++||+. +..|..+. + .|. .|+|||+.++..|+.++
T Consensus 84 ~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~~~ 163 (265)
T 1rii_A 84 RSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPY 163 (265)
T ss_dssp ECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHHHHH
T ss_pred ECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHHHHH
Confidence 8899999999999999999999999876 44554321 0 111 18999999999999999
Q ss_pred HHH-hH---hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 424 ILK-IE---HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 424 i~e-l~---~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
+.+ |. ..+++|||||||++|++++++++|.+.+.++. ++|+|+++.+++++
T Consensus 164 l~~~i~~~~~~~~~vlvVsHg~~ir~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (265)
T 1rii_A 164 FTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDS 219 (265)
T ss_dssp HHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHHCCCCSSCCEEEEBCT
T ss_pred HHHHHHHhccCCCeEEEEeChHHHHHHHHHHcCCCHHHHhhcCCCCCeEEEEEECC
Confidence 999 64 25679999999999999999999999998888 99999999998874
No 16
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.98 E-value=3.9e-32 Score=270.64 Aligned_cols=180 Identities=23% Similarity=0.240 Sum_probs=159.4
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|.+.+.+++.|||||+.||+|||+.+.. ++
T Consensus 26 m~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 105 (268)
T 4eo9_A 26 NTATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLALDTADWLWIPV 105 (268)
T ss_dssp CCEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 45799999999999999999988 9999999999999999999976667779999999999999999863 67
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH-HHHHhcCCCCC----------------------CCCCCCCHHHHHHHHHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ-YIDTRADKFYN----------------------RWPQGECYKDVLTRLEL 422 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~-~~~~~~d~~~~----------------------~~p~gES~~d~~~Rv~~ 422 (512)
.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.... ++|+|||+.++..|+..
T Consensus 106 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~~ 185 (268)
T 4eo9_A 106 RRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFLP 185 (268)
T ss_dssp EECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHHH
T ss_pred EECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999975 55566543211 35899999999999999
Q ss_pred HHHHh-H---hCCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC
Q psy673 423 IILKI-E---HSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 423 ~i~el-~---~~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~ 474 (512)
++.++ . ..+++|||||||++|++++++++|.+.+.++. .+++|+++.|++++
T Consensus 186 ~l~~~i~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~n~~i~~l~~~~ 242 (268)
T 4eo9_A 186 YFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNVPTGIPLRYDLDA 242 (268)
T ss_dssp HHHHTHHHHHHTTCCEEEEECHHHHHHHHHHHTTCCHHHHHTCCCCSSCCEEEEECT
T ss_pred HHHHHHHHhccCCCEEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCeEEEEEECC
Confidence 99884 2 25689999999999999999999999999999 99999999999873
No 17
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.98 E-value=2.1e-32 Score=256.28 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=149.4
Q ss_pred cEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCcccccccccc
Q psy673 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDI 374 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~ 374 (512)
|+||||||||+.+|..++++| |+|||+.|++||+.+++.|...+ |||||+.||+|||+.+..++..++.|+|+
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~~~~-----i~sSpl~Ra~qTA~~l~~~~~~~~~L~E~ 75 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLP-----AFSSDLLRARRTAELAGFSPRLYPELREI 75 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSCSCC-----EEECSSHHHHHHHHHTTCCCEECGGGSCC
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhcCCC-----EEECCcHHHHHHHHHhCCCcEECccceeC
Confidence 589999999999998888877 99999999999999999997643 99999999999999976688889999999
Q ss_pred cCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhCCC
Q psy673 375 HAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEP 454 (512)
Q Consensus 375 ~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g~~ 454 (512)
++|.|+|++.+++.+.+|+.|..| ..+.+|+|||+.++..|+..++.++ . ++||||||+++|+++++++++
T Consensus 76 ~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~~i~~l~~~l~~-- 146 (177)
T 1v37_A 76 HFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL-K--APAVLFTHGGVVRAVLRALGE-- 146 (177)
T ss_dssp CCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHHHHHHHHHHTTS--
T ss_pred CCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHHHHHHHHHHHcC--
Confidence 999999999999999999998877 4678899999999999999999999 5 789999999999999999998
Q ss_pred chhhcc-cCCCceEEEEEEeCCEEE
Q psy673 455 PDRFAY-KVRKKTHFLLSSRNMTLE 478 (512)
Q Consensus 455 ~~~~~~-~ip~~sv~~l~~~~~~~~ 478 (512)
. .+++++++.++++++.|.
T Consensus 147 -----~~~~~~~~i~~~~~~~~~~~ 166 (177)
T 1v37_A 147 -----DGLVPPGSAVAVDWPRRVLV 166 (177)
T ss_dssp -----CCCCCTTCEEEEETTTEEEE
T ss_pred -----CCCCCCCEEEEEEEeCCeeE
Confidence 4 788999999998876665
No 18
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.98 E-value=9.7e-32 Score=260.36 Aligned_cols=176 Identities=14% Similarity=0.007 Sum_probs=149.3
Q ss_pred cccCcCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----Cc
Q psy673 290 MHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----SH 365 (512)
Q Consensus 290 mn~~~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~~ 365 (512)
.|++.+||+||||||||+++|..+++ .|+|||+.|++||+.+++.|....+ +.|||||+.||+|||+++.. ++
T Consensus 15 ~~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~~~--d~i~sSpl~Ra~qTA~~i~~~~~~~~ 91 (219)
T 2qni_A 15 ENLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAKAL--RRIVSSAETKAIETAHMLAETSGAAI 91 (219)
T ss_dssp ------CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHHTC--CEEEECSSHHHHHHHHHHTTTTCCEE
T ss_pred hhhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcCCC--CEEEECCcHHHHHHHHHHHHhcCCCE
Confidence 36677789999999999999987766 5999999999999999999987654 49999999999999999975 67
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC---CCeEEEEeChHH
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS---KSNLLIVSHPAV 442 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~---~~~vlIVsH~~v 442 (512)
.+++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++..|+..++.++... .++|||||||++
T Consensus 92 ~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 92 EIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp EECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred EECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 78999999999999999987754 45666777764 67899999999999999999999653 258999999999
Q ss_pred HHHHHHHhhCCCchhhcc-cCCCceEEEEEEe
Q psy673 443 LRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 443 ir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~ 473 (512)
|++++++++|.+....+. .+++++++.|+..
T Consensus 167 i~~l~~~l~~~~~~~~~~~~~~n~si~~l~~~ 198 (219)
T 2qni_A 167 GTLLKCHIEGRGISRSKDQPAGGGNLFRFSIA 198 (219)
T ss_dssp HHHHHHHHHTCCCCCC--CCTTSCEEEEEEHH
T ss_pred HHHHHHHHhCcCHHHHhhccCCCeeEEEEEec
Confidence 999999999999888777 8999999999875
No 19
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.97 E-value=7.1e-31 Score=256.30 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=152.5
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-------Cc
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------SH 365 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------~~ 365 (512)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|... +++.|||||+.||+|||+.+.. ++
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~~~--~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 89 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLKDI--HFMNAYSSDSGRAIETANLVLKYSEQSKLKL 89 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTTTS--CEEEEEECSCHHHHHHHHHHHHHTTCTTSCE
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhcCC--CCCEEEECCcHHHHHHHHHHHHhcccCCCCe
Confidence 56899999999999999999888 9999999999999999999854 4559999999999999999864 67
Q ss_pred ccccccccccCCcCCCCCHHHHHHhchHH----------------HHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q psy673 366 KEYKALDDIHAGICEGQTYTEIYTNHCAQ----------------YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH 429 (512)
Q Consensus 366 ~~~~~L~E~~~G~~eg~t~~ei~~~~p~~----------------~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~ 429 (512)
..++.|+|+++|.|+|++.+++.+.+|.. +..|..+ ...+|+|||+.++..|+..++.+|..
T Consensus 90 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gEs~~~~~~R~~~~l~~l~~ 167 (237)
T 3r7a_A 90 EQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRA--ADPTKQAEDWELFSTRIKAEIDKISE 167 (237)
T ss_dssp EECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHH--HCTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998776542 2223322 12568999999999999999999953
Q ss_pred -----CCCeEEEEeChHHHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeCCEEEEEe
Q psy673 430 -----SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRNMTLELIF 481 (512)
Q Consensus 430 -----~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~~~~~~i~ 481 (512)
.+++|||||||++|+++++++++ .... .+++++|+.|++.++.|.+..
T Consensus 168 ~~~~~~~~~vlvVsHg~~i~~l~~~l~~----~~~~~~~~n~sv~~l~~~~~~~~l~~ 221 (237)
T 3r7a_A 168 EAAKDGGGNVLVVVHGLLITTLIEMLDS----SKTKLGVENASVTKIVYQDGIYTVES 221 (237)
T ss_dssp HHHHTTCEEEEEEECHHHHHHHHHHHHG----GGCCSCCCTTCEEEEEEETTEEEECC
T ss_pred HhhcCCCCeEEEEcCHHHHHHHHHHhcc----ccccCCCCCceEEEEEEECCEEEEEE
Confidence 46899999999999999999984 2345 899999999999988776654
No 20
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.97 E-value=4.7e-30 Score=255.22 Aligned_cols=173 Identities=19% Similarity=0.206 Sum_probs=113.0
Q ss_pred CCcEEEEecccccccccccccCC---CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc--------
Q psy673 295 TPRTVYLTRPGESINNVQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-------- 363 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-------- 363 (512)
++++||||||||+.+|..++++| |+|||+.|++||+.++++|.... ++.|||||+.||+|||+.+..
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (265)
T 3e9c_A 2 LTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLKDLH--FTNVFVSNLQRAIQTAEIILGNNLHSSAT 79 (265)
T ss_dssp EEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTTTCC--CSEEEECSSHHHHHHHHHHHHTCSSCTTC
T ss_pred cccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHhcCC--CCEEEECCcHHHHHHHHHHHHhccccCCC
Confidence 35799999999999999988877 99999999999999999998654 459999999999999999853
Q ss_pred CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC-------------
Q psy673 364 SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS------------- 430 (512)
Q Consensus 364 ~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~------------- 430 (512)
++.+++.|+|+++|.|+|++.+++.+.++. |..++..+++|+|||+.++..|+..++.+|.+.
T Consensus 80 ~v~~~~~L~E~~~G~~eg~~~~ei~~~~~~----~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~e~~~~~~~~~ 155 (265)
T 3e9c_A 80 EMILDPLLRERGFGVAEGRPKEHLKNMANA----AGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVP 155 (265)
T ss_dssp CEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCSSSCC--
T ss_pred CeEECccceeCcCCCCCCCCHHHHHHHHHH----hccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 578899999999999999999999887653 445666789999999999999999999998542
Q ss_pred -------------------CCeEEEEeChHHHHHHHHHhhCC-----Cch--hhcc-cC-CCceEEEEEEe
Q psy673 431 -------------------KSNLLIVSHPAVLRCLLGYFQEE-----PPD--RFAY-KV-RKKTHFLLSSR 473 (512)
Q Consensus 431 -------------------~~~vlIVsH~~vir~ll~~l~g~-----~~~--~~~~-~i-p~~sv~~l~~~ 473 (512)
+++|||||||++|+++++++++. +.. .... .+ ++++|..+...
T Consensus 156 ~~~~~p~~~~~~e~~~~~~~~~vlvVsHg~~i~~ll~~ll~~~~~~~p~~~~~~~~~~v~~n~sit~~~~~ 226 (265)
T 3e9c_A 156 SEADQPVIAGLADDGAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRFIFT 226 (265)
T ss_dssp --CCCCCCCSSTTTTCTTCCCEEEEEECHHHHHHHHHHHHHTSCEEECTTCCHHHHTSCCCTTCEEEEEEE
T ss_pred cccccccccccccccccCCCCeEEEEeCHHHHHHHHHHHHcccccccccchhHHhcccCCCCCeeEEEEEE
Confidence 56899999999999999999953 222 1112 34 88877766644
No 21
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.96 E-value=7.6e-30 Score=255.01 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=153.4
Q ss_pred ccCcCCcEEEEecccccccccccccCC---CCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----
Q psy673 291 HLNITPRTVYLTRPGESINNVQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG---- 363 (512)
Q Consensus 291 n~~~~~~~I~LVRHGes~~n~~~~~~g---D~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~---- 363 (512)
+++..+++||||||||+.+|..++++| |+|||+.|++||+.++++|.... ++.|||||+.||+|||+.+..
T Consensus 3 ~~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~~~~--~~~v~sSpl~Ra~qTA~~i~~~~~~ 80 (275)
T 3dcy_A 3 YFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVK--FTHAFSSDLMRTKQTMHGILERSKF 80 (275)
T ss_dssp EECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTTTCC--CSEEEECSSHHHHHHHHHHHTTCSS
T ss_pred cccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhccCC--CCEEEECChHHHHHHHHHHHHhccc
Confidence 345677999999999999999888876 99999999999999999998654 459999999999999999854
Q ss_pred ----CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh----C-----
Q psy673 364 ----SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH----S----- 430 (512)
Q Consensus 364 ----~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~----~----- 430 (512)
++.+++.|+|+++|.|+|++.+++.+.+|. |..++..+++|+|||+.++..|+..++.+|.+ .
T Consensus 81 ~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~~----~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~~ 156 (275)
T 3dcy_A 81 CKDMTVKYDSRLRERKYGVVEGKALSELRAMAKA----AREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKE 156 (275)
T ss_dssp CTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHHH----TTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCeeECcccccCccCCcCCCCHHHHHHHHHH----HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 578899999999999999999999987663 55667789999999999999999999999843 1
Q ss_pred --------------------------------------CCeEEEEeChHHHHHHHHHhh---------CCCchhhcc-cC
Q psy673 431 --------------------------------------KSNLLIVSHPAVLRCLLGYFQ---------EEPPDRFAY-KV 462 (512)
Q Consensus 431 --------------------------------------~~~vlIVsH~~vir~ll~~l~---------g~~~~~~~~-~i 462 (512)
+++|||||||++|++++.+|+ |++.+++.. ++
T Consensus 157 ~~~~~~p~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~VlvVsHg~~ir~l~~~l~~~~~~~lp~~l~~~~i~~~~~ 236 (275)
T 3dcy_A 157 QFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTP 236 (275)
T ss_dssp --------CHHHHHHHTTSCC-------------CCCCSCEEEEEECHHHHHHHHHHHHHTTCCBCCTTCCHHHHHSCCC
T ss_pred ccccccchHHHHHHHHhhccccccccchhcccccccCCCceEEEEechHHHHHHHHHHHhhcCCCCCCCCCHHHhcCcCC
Confidence 468999999999999999999 999888887 77
Q ss_pred CCceE-EEEEEe
Q psy673 463 RKKTH-FLLSSR 473 (512)
Q Consensus 463 p~~sv-~~l~~~ 473 (512)
+.|-- +.+++.
T Consensus 237 ~tgi~~~~~~~~ 248 (275)
T 3dcy_A 237 NTGMSLFIINFE 248 (275)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCCCeeEEEEEc
Confidence 77733 555554
No 22
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.96 E-value=6.8e-30 Score=253.94 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=137.3
Q ss_pred CCcEEEEecccccccccccccCC--CCCCCHHHHHHHHHhhhhhhhcC-----CCCcEEEeCcHHHHHHHHhHccc----
Q psy673 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKN-----LSDLRIWTSSKEAAKQTVAQCPG---- 363 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~g--D~pLTe~G~~qA~~l~~~L~~~~-----~~~~~V~tSpl~RaiqTA~~i~~---- 363 (512)
++++||||||||+.+|..+++.| |+|||+.|++||+.++++|...+ ..++.|||||+.||+|||+.+..
T Consensus 4 ~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~ 83 (265)
T 3f3k_A 4 LTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLSD 83 (265)
T ss_dssp CCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSCH
T ss_pred CCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhccc
Confidence 56899999999999999999888 99999999999999999998743 45669999999999999999864
Q ss_pred ------CcccccccccccCCcCCCCCHHHHHHhchHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC-----
Q psy673 364 ------SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTR--ADKFYNRWPQGECYKDVLTRLELIILKIEHS----- 430 (512)
Q Consensus 364 ------~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~--~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~----- 430 (512)
++.+++.|+|+++|.|+|++.+++.+.+|+...... .+.|...+|+|||+.++..|+..++.+|.+.
T Consensus 84 ~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~ 163 (265)
T 3f3k_A 84 EQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKHQ 163 (265)
T ss_dssp HHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 467899999999999999999999999885321100 0111224789999999999999999999542
Q ss_pred ----CCeEEEEeChHHHHHHHHHhhCCCch
Q psy673 431 ----KSNLLIVSHPAVLRCLLGYFQEEPPD 456 (512)
Q Consensus 431 ----~~~vlIVsH~~vir~ll~~l~g~~~~ 456 (512)
+++|||||||++|++++++++|.+++
T Consensus 164 ~~~~~~~vliVsHg~~ir~l~~~l~g~~~~ 193 (265)
T 3f3k_A 164 SEGRASDIMVFAHGHALRYFAAIWFGLGVQ 193 (265)
T ss_dssp HTTCCCEEEEEECHHHHHHHHHHHTTCSEE
T ss_pred ccCCCCcEEEEeChHHHHHHHHHHhCCCHH
Confidence 47999999999999999999998874
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.96 E-value=1.9e-29 Score=251.48 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=157.1
Q ss_pred cCcCCcEEEEeccccccccc------------cc------------------ccCC---CCCCCHHHHHHHHHhhhhhhh
Q psy673 292 LNITPRTVYLTRPGESINNV------------QA------------------ILGG---DSDLTAGGQEYSKCLSDFVSE 338 (512)
Q Consensus 292 ~~~~~~~I~LVRHGes~~n~------------~~------------------~~~g---D~pLTe~G~~qA~~l~~~L~~ 338 (512)
...++++||||||||+.+|. .+ +++| |+|||+.|++||+.+++.|..
T Consensus 5 ~~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~ 84 (273)
T 3d4i_A 5 ATISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLD 84 (273)
T ss_dssp TTSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 34557899999999999853 22 2333 999999999999999999987
Q ss_pred cCCCCcEEEeCcHHHHHHHHhHccc--------Cccccccccc-ccCCcCCC----CCHHHHHHhchH---HHHHHhcCC
Q psy673 339 KNLSDLRIWTSSKEAAKQTVAQCPG--------SHKEYKALDD-IHAGICEG----QTYTEIYTNHCA---QYIDTRADK 402 (512)
Q Consensus 339 ~~~~~~~V~tSpl~RaiqTA~~i~~--------~~~~~~~L~E-~~~G~~eg----~t~~ei~~~~p~---~~~~~~~d~ 402 (512)
.+.+++.|||||+.||+|||+.+.. ++..++.|+| +++|.|+| ++.+++.+.+|. .|..|..+
T Consensus 85 ~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~- 163 (273)
T 3d4i_A 85 SGVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR- 163 (273)
T ss_dssp HTCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG-
T ss_pred cCCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC-
Confidence 6667779999999999999999853 4677899999 99999998 688999887764 34334332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHh----CCCeEEEEeChHHHHHHHHHhhCCCchhhcc------cCCCceEEEEEE
Q psy673 403 FYNRWPQGECYKDVLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY------KVRKKTHFLLSS 472 (512)
Q Consensus 403 ~~~~~p~gES~~d~~~Rv~~~i~el~~----~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~------~ip~~sv~~l~~ 472 (512)
..+|+|||+.++..|+..++.++.. .+++|||||||++|++++++++|.+....+. .+++++++.|+.
T Consensus 164 --~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~n~si~~l~~ 241 (273)
T 3d4i_A 164 --CSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPRECGDFAQLVRKIPSLGMCFCEE 241 (273)
T ss_dssp --GGCCTTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTTHHHHTTHHHHTCCCCCHHHHHHHHHTCCTTCEEEEEE
T ss_pred --CcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechHHHHHHHHHHcCCCcchHHHHhhhccccCcceEEEEEE
Confidence 2568999999999999999999853 3579999999999999999999998876542 589999999999
Q ss_pred eC--CEEEEEe-ccCCC
Q psy673 473 RN--MTLELIF-PHHST 486 (512)
Q Consensus 473 ~~--~~~~~i~-~~~~~ 486 (512)
++ +.|+.+. ...+.
T Consensus 242 ~~~~~~w~l~~~~~~~l 258 (273)
T 3d4i_A 242 NREDGKWDLVNPPVKTL 258 (273)
T ss_dssp CTTTCCEEEECCSSCCC
T ss_pred cCCCCceeECCCCCCCc
Confidence 85 6788877 44444
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.96 E-value=7.8e-29 Score=245.80 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=150.1
Q ss_pred CCcEEEEecccccccc----------------------------cccccCC---CCCCCHHHHHHHHHhhhhhhhcCCCC
Q psy673 295 TPRTVYLTRPGESINN----------------------------VQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSD 343 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n----------------------------~~~~~~g---D~pLTe~G~~qA~~l~~~L~~~~~~~ 343 (512)
++++||||||||+.+| ..++++| |+|||+.|++||+.+++.|...+.++
T Consensus 3 ~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~~~~~ 82 (263)
T 3c7t_A 3 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMAGVSI 82 (263)
T ss_dssp -CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHCCCCC
Confidence 5789999999999983 3444444 99999999999999999999766677
Q ss_pred cEEEeCcHHHHHHHHhHccc--------Cccccccccc-ccCCcC---CCCCHHHHHHhchHHHHHHhcCCCCCCCCCCC
Q psy673 344 LRIWTSSKEAAKQTVAQCPG--------SHKEYKALDD-IHAGIC---EGQTYTEIYTNHCAQYIDTRADKFYNRWPQGE 411 (512)
Q Consensus 344 ~~V~tSpl~RaiqTA~~i~~--------~~~~~~~L~E-~~~G~~---eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gE 411 (512)
+.|||||+.||+|||+.+.. ++..++.|+| +++|.| +|++.+++.+.+|... .+... +....|+||
T Consensus 83 d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~~-~~~~~-~~~~~p~gE 160 (263)
T 3c7t_A 83 KHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNVD-MTYKP-YVEMDASAE 160 (263)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCBC-TTCCC-SCCCCSSCC
T ss_pred CEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCcc-ccccc-cccCCCCCC
Confidence 79999999999999999853 4577899999 987544 8899999988776421 11111 122238999
Q ss_pred CHHHHHHHHHHHHHHhHh----CCCeEEEEeChHHHHHHHHHhhCCCchhhc-------c---cCCCceEEEEEEeCCEE
Q psy673 412 CYKDVLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPDRFA-------Y---KVRKKTHFLLSSRNMTL 477 (512)
Q Consensus 412 S~~d~~~Rv~~~i~el~~----~~~~vlIVsH~~vir~ll~~l~g~~~~~~~-------~---~ip~~sv~~l~~~~~~~ 477 (512)
|+.++..|+..++.++.+ .+++|||||||++|++++++++|.+....+ . .+++++|+.|+..+ |
T Consensus 161 s~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~n~si~~l~~~~--w 238 (263)
T 3c7t_A 161 TMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKP--W 238 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTCCEEEEECHHHHHHHHHHHHTTCSSCCSCCCCCTTSSSSCCCTTCEEEEEETT--T
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHHHhCCCchhhcccHHHHHHhcccCCcceehhecccC--c
Confidence 999999999999999853 357899999999999999999999887654 1 58899999999876 6
Q ss_pred EEEe-ccCCC
Q psy673 478 ELIF-PHHST 486 (512)
Q Consensus 478 ~~i~-~~~~~ 486 (512)
+.+. ..+++
T Consensus 239 ~~~~~~~~~l 248 (263)
T 3c7t_A 239 DVVSPPCPPS 248 (263)
T ss_dssp EEECCSSCCC
T ss_pred eECCCCCCCc
Confidence 6666 44444
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.96 E-value=3.7e-29 Score=248.29 Aligned_cols=188 Identities=16% Similarity=0.106 Sum_probs=158.2
Q ss_pred cEEEEeccccccccccc------------cc---------------------CCCCCCCHHHHHHHHHhhhhhhhcCCCC
Q psy673 297 RTVYLTRPGESINNVQA------------IL---------------------GGDSDLTAGGQEYSKCLSDFVSEKNLSD 343 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~------------~~---------------------~gD~pLTe~G~~qA~~l~~~L~~~~~~~ 343 (512)
++|||+||||+.+|..+ .+ ..|+|||+.|++||+.+++.|.+.+..+
T Consensus 1 r~i~l~RHge~~~~~~~~~w~~~~~~~~~~y~~~d~~~p~~~~~r~~~~~~~d~D~pLT~~G~~QA~~l~~~L~~~~~~~ 80 (264)
T 3mbk_A 1 RCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLESNTVI 80 (264)
T ss_dssp CEEEEEECCCBHHHHHCTTGGGGTBCTTSCBCCCSTTSCSCCCCCTTCGGGGTTSCCBCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CeEEEEeCCcccccccchhHHHhhcCCCCceecCCCCCCCcccCCCCchhhcCCCCCCChHHHHHHHHHHHHHHHcCCCc
Confidence 58999999998654311 11 1499999999999999999999877777
Q ss_pred cEEEeCcHHHHHHHHhHccc--------CcccccccccccCCcCCC-------CCHHHHHHhchHHHHHHhcCCCCCCCC
Q psy673 344 LRIWTSSKEAAKQTVAQCPG--------SHKEYKALDDIHAGICEG-------QTYTEIYTNHCAQYIDTRADKFYNRWP 408 (512)
Q Consensus 344 ~~V~tSpl~RaiqTA~~i~~--------~~~~~~~L~E~~~G~~eg-------~t~~ei~~~~p~~~~~~~~d~~~~~~p 408 (512)
+.|||||+.||+|||+.+.. ++..++.|+| +|.|+| ++.+++.+.+|..+..|..+...+.+|
T Consensus 81 d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~p 158 (264)
T 3mbk_A 81 DHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLA 158 (264)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCCCCCCHHHHHHTTCCBCTTCCCSSCGGGCC
T ss_pred CEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCCCCCCHHHHHHhCCCcchhhccccCcccCC
Confidence 89999999999999999854 5778999999 689998 589999998887777777776777889
Q ss_pred CCCCHHHHHHHHHHHHHHhHh----CCCeEEEEeChHHHHHHHHHhhCCCchhhcc------cCCCceEEEEEEe--CCE
Q psy673 409 QGECYKDVLTRLELIILKIEH----SKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY------KVRKKTHFLLSSR--NMT 476 (512)
Q Consensus 409 ~gES~~d~~~Rv~~~i~el~~----~~~~vlIVsH~~vir~ll~~l~g~~~~~~~~------~ip~~sv~~l~~~--~~~ 476 (512)
+|||+.++..|+..++.++.+ .+++|||||||++|++++++++|.+.+.... ++|.+++..++.. .+.
T Consensus 159 ~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i~~l~~~l~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 238 (264)
T 3mbk_A 159 ISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKDFVQMVRKIPYLGFCSCEELGETGI 238 (264)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTTHHHHTTTGGGTCCCCCHHHHHHHHTTCCTTCEEEEEECSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHHcCCCHHHHHHHHHhccCCCchHHHHhhhhccCCc
Confidence 999999999999999999954 3589999999999999999999999887654 5889988888753 667
Q ss_pred EEEEe-ccCCC
Q psy673 477 LELIF-PHHST 486 (512)
Q Consensus 477 ~~~i~-~~~~~ 486 (512)
|++++ +++++
T Consensus 239 W~l~~~~~~~l 249 (264)
T 3mbk_A 239 WQLTDPPILPL 249 (264)
T ss_dssp EEEECCSSCCC
T ss_pred EEeCCCCCCCc
Confidence 99988 56555
No 26
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.94 E-value=2.1e-26 Score=219.50 Aligned_cols=165 Identities=20% Similarity=0.194 Sum_probs=131.3
Q ss_pred cCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc-----Ccccc
Q psy673 294 ITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG-----SHKEY 368 (512)
Q Consensus 294 ~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~-----~~~~~ 368 (512)
.++++|||||||| +|..++++.|+|||+.|++||+.+++.|...+.+++.|||||+.||+|||+.+.. ++..+
T Consensus 8 ~~~~~i~lvRHGe--~n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 85 (202)
T 3mxo_A 8 KATRHIFLIRHSQ--YHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVST 85 (202)
T ss_dssp SSCEEEEEEECCC--BCTTCSSGGGCCBCHHHHHHHHHHHHHHHTTCCCCSEEEEESSHHHHHHHHHHHHTSTTCCEEEE
T ss_pred CCceEEEEEeCcc--ccCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhCCCCCeeeC
Confidence 4578999999999 4667777679999999999999999999986666779999999999999999963 57788
Q ss_pred cccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC-------CCeEEEEeChH
Q psy673 369 KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS-------KSNLLIVSHPA 441 (512)
Q Consensus 369 ~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~-------~~~vlIVsH~~ 441 (512)
+.|+| |+++++ .+| +..| .+++|++.++..|+..++.++.+. +++|||||||+
T Consensus 86 ~~L~E-------g~~~~~---~~~--~~~w--------~~~~es~~~~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~ 145 (202)
T 3mxo_A 86 DLLRE-------GAPIEP---DPP--VSHW--------KPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHAN 145 (202)
T ss_dssp GGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHH
T ss_pred ccccc-------CCccCC---CCc--HHhh--------ccCCcccccHHHHHHHHHHHHHHhhhhccCCCceEEEEeCHH
Confidence 88988 444332 111 2222 257899999999999999998542 46899999999
Q ss_pred HHHHHHHHhhCCCchhhcc-cCCCceEEEEEEe-CCEEEEE
Q psy673 442 VLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSR-NMTLELI 480 (512)
Q Consensus 442 vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~-~~~~~~i 480 (512)
+|++++++++|.+++.++. .+++++++.|++. ++.+.+.
T Consensus 146 ~ir~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~ 186 (202)
T 3mxo_A 146 VIRYIVCRALQFPPEGWLRLSLNNGSITHLVIRPNGRVALR 186 (202)
T ss_dssp HHHHHHHHHTTCCGGGGGGBCCCTTCEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHhCCCHHHHhhcccCCceEEEEEEcCCCcEEEE
Confidence 9999999999999999888 9999999999997 4444443
No 27
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.93 E-value=3.6e-26 Score=220.22 Aligned_cols=167 Identities=16% Similarity=0.061 Sum_probs=111.9
Q ss_pred cCCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhc--CCCCcEEEeCcHHHHHHHHhHccc-----Ccc
Q psy673 294 ITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEK--NLSDLRIWTSSKEAAKQTVAQCPG-----SHK 366 (512)
Q Consensus 294 ~~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~--~~~~~~V~tSpl~RaiqTA~~i~~-----~~~ 366 (512)
.++++||||||||+.+|..+ -..|+|||+.|++||+.+++.|... +.+++.|||||+.||+|||+.+.. ++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 45689999999999999764 2239999999999999999999876 345669999999999999999954 567
Q ss_pred cccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhC-----CCeEEEEeChH
Q psy673 367 EYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHS-----KSNLLIVSHPA 441 (512)
Q Consensus 367 ~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~-----~~~vlIVsH~~ 441 (512)
.++.|+| |+++.+. . .+ ....|+|||+.++..|+..++.++... +++|||||||+
T Consensus 98 ~~~~L~E-------G~~~~~~------~------~~-~~~~~~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 157 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLPD------P------LP-RHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGN 157 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSCCCSSCCEEEEEEECHH
T ss_pred eCccccC-------CCCCCCC------C------Cc-ccCCCCCccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCcH
Confidence 7888888 4443311 0 11 112368999999999999999999542 24899999999
Q ss_pred HHHHHHHHhhCCCchhhcc-cCCCceEEEEEEeC-CEEEEEe
Q psy673 442 VLRCLLGYFQEEPPDRFAY-KVRKKTHFLLSSRN-MTLELIF 481 (512)
Q Consensus 442 vir~ll~~l~g~~~~~~~~-~ip~~sv~~l~~~~-~~~~~i~ 481 (512)
+|++++++++|.+.+..+. .+++++|+.|++.+ +.|.+..
T Consensus 158 ~i~~ll~~llg~~~~~~~~~~~~n~si~~l~~~~~g~~~l~~ 199 (214)
T 3eoz_A 158 VIRYFLCRALQIPLFAWLRFSSYNCGITWLVLDDEGSVVLRE 199 (214)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTCCCSEEEEEEETTSCEEEEC
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999998888 99999999999984 4455544
No 28
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.89 E-value=8.3e-23 Score=188.01 Aligned_cols=146 Identities=12% Similarity=0.155 Sum_probs=112.6
Q ss_pred cEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCcccccccccccC
Q psy673 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHA 376 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~~ 376 (512)
|+||||||||+++|..+ ..|+|||+.|++||+.++++|...+..++.|||||+.||+|||+.+.........+
T Consensus 1 m~l~LvRHg~t~~n~~g--~~d~pLt~~G~~qA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~----- 73 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAAS--DSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGDCLNLPSSA----- 73 (161)
T ss_dssp CEEEEEECCCBCSCSSS--GGGCCBCHHHHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHHHHHHHHHSCCCSCC-----
T ss_pred CEEEEEeCCCcCCCCCC--CCcCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCchHHHHHHHHHHHHhcCCCceE-----
Confidence 48999999999998743 23999999999999999999998766677999999999999999997521111001
Q ss_pred CcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHh-CCCeEEEEeChHHHHHHHHHhhCCCc
Q psy673 377 GICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEH-SKSNLLIVSHPAVLRCLLGYFQEEPP 455 (512)
Q Consensus 377 G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~-~~~~vlIVsH~~vir~ll~~l~g~~~ 455 (512)
..|++ -+|+|| + .|+..++.++.. .+++|+||||+++|++++++++|.+.
T Consensus 74 ~~~~~------------------------l~p~ge-~----~r~~~~l~~~~~~~~~~vlvV~H~~~i~~l~~~l~~~~~ 124 (161)
T 1ujc_A 74 EVLPE------------------------LTPCGD-V----GLVSAYLQALTNEGVASVLVISHLPLVGYLVAELCPGET 124 (161)
T ss_dssp EECGG------------------------GSTTCC-H----HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHSTTCC
T ss_pred EecCC------------------------cCCCCC-H----HHHHHHHHHHhccCCCeEEEEeCHHHHHHHHHHHhCCCC
Confidence 11211 147788 4 566677777643 56899999999999999999999876
Q ss_pred hhhcccCCCceEEEEEEe-CCEEEEEe
Q psy673 456 DRFAYKVRKKTHFLLSSR-NMTLELIF 481 (512)
Q Consensus 456 ~~~~~~ip~~sv~~l~~~-~~~~~~i~ 481 (512)
. ..+++++++.++++ ++.+.+..
T Consensus 125 ~---~~~~~~~i~~l~~~~~~~~~l~~ 148 (161)
T 1ujc_A 125 P---PMFTTSAIASVTLDESGNGTFNW 148 (161)
T ss_dssp C---CCCCTTCEEEEEECTTSCEEEEE
T ss_pred c---cccCCCeEEEEEEcCCCCeEEEE
Confidence 5 36789999999987 55565544
No 29
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.1e-22 Score=187.43 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=102.5
Q ss_pred CcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc----C--ccccc
Q psy673 296 PRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG----S--HKEYK 369 (512)
Q Consensus 296 ~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~----~--~~~~~ 369 (512)
|++||||||||+++|..+.-..|.|||+.|++||+.++++|.+.+..++.|||||+.||+|||+.+.. + +..++
T Consensus 8 M~~l~LvRHg~t~~n~~~~g~~d~pLt~~G~~qa~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~ 87 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPGERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAARCRQTTQAWQRAFNEGIDIVYID 87 (173)
T ss_dssp CCEEEEEECCCBCC-----CGGGCCBCHHHHHHHHHHHHHHHHHTCCCSEEEECSSHHHHHHHHHHHHHHC--CEEEECG
T ss_pred ccEEEEEeCCCcCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCHHHHHHHHHHHHHhcCCCCCeEECH
Confidence 57999999999999975511129999999999999999999976666779999999999999999875 2 23344
Q ss_pred ccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHH
Q psy673 370 ALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGY 449 (512)
Q Consensus 370 ~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~ 449 (512)
.|.|.+ .|++.+ ++ ++...+++|+||||+++|++++++
T Consensus 88 ~l~e~~----------------------------------~e~~~~-------~l-~~~~~~~~vlvVsH~~~i~~l~~~ 125 (173)
T 2rfl_A 88 EMYNAR----------------------------------SETYLS-------LI-AAQTEVQSVMLVGHNPTMEATLEA 125 (173)
T ss_dssp GGSSCS----------------------------------SSCSHH-------HH-HTCTTCSEEEEEECTTHHHHHHHH
T ss_pred hHhcCC----------------------------------HHHHHH-------HH-hCCCCCCeEEEEeCCHHHHHHHHH
Confidence 444421 245543 33 444456899999999999999999
Q ss_pred hhCCCchhh-cc-cCCCceEEEEEEeC
Q psy673 450 FQEEPPDRF-AY-KVRKKTHFLLSSRN 474 (512)
Q Consensus 450 l~g~~~~~~-~~-~ip~~sv~~l~~~~ 474 (512)
++|.+.... +. .+++++++.+++.+
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (173)
T 2rfl_A 126 MIGEDLLHAALPSGFPTSGLAVLDQDD 152 (173)
T ss_dssp HHCHHHHHHHCTTCCCTTCEEEEEC--
T ss_pred HhCCCcchhhhhcCCCCCeEEEEEecC
Confidence 999876432 44 88999999998763
No 30
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.79 E-value=7e-19 Score=182.40 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=119.5
Q ss_pred hccccCcCCcEEEEecccccccccccccC-CCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHccc---
Q psy673 288 FLMHLNITPRTVYLTRPGESINNVQAILG-GDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPG--- 363 (512)
Q Consensus 288 fLmn~~~~~~~I~LVRHGes~~n~~~~~~-gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~--- 363 (512)
+|.+-...+++||||||||+.+|.....+ .|.|||+.|++||+.++++|... .++.|||||+.||+|||+.+..
T Consensus 174 ~l~~g~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~~~--~~d~i~sSp~~Ra~~Ta~~~~~~~~ 251 (364)
T 3fjy_A 174 RVQEGAATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELACF--NPTRLATSPWLRCQETLQVLSWQTE 251 (364)
T ss_dssp HHHTTGGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHGGG--CEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred HhccCCCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhccC--CCCEEEEcChHHHHHHHHHHHHhcC
Confidence 33333456789999999999976542111 28999999999999999999864 4569999999999999999865
Q ss_pred -CcccccccccccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHH
Q psy673 364 -SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAV 442 (512)
Q Consensus 364 -~~~~~~~L~E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~v 442 (512)
++..++.|+|..+ +++..++..|+...+.++...+++||||||+++
T Consensus 252 ~~~~~~~~l~e~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~vlvV~H~~~ 298 (364)
T 3fjy_A 252 RPMEHINTLTEDAF---------------------------------AEHPAVSWLAFREQITQTLNSRETTAICMHRPV 298 (364)
T ss_dssp CCEEECGGGSHHHH---------------------------------HHCHHHHHHHHHHHHHHHHHHTCEEEEEECHHH
T ss_pred CCeEECcccCcccc---------------------------------ccCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 4556666766422 134556777788888887666789999999999
Q ss_pred HHHHHHHhhCCCc-hhhcc-------cCCCceEEEEEEe--CCEEEEEe
Q psy673 443 LRCLLGYFQEEPP-DRFAY-------KVRKKTHFLLSSR--NMTLELIF 481 (512)
Q Consensus 443 ir~ll~~l~g~~~-~~~~~-------~ip~~sv~~l~~~--~~~~~~i~ 481 (512)
|+.|+.++.|.+. ..... .+|++++..+++. +..+.++.
T Consensus 299 i~~l~~~l~g~~~~~~~~~~~~~~~~~~pt~~~~v~~~~~~~~~~~v~~ 347 (364)
T 3fjy_A 299 IGGMYDHLRGLCARKQLAKQLIAKSPYMPTGTAMSLFIIDTPQGPSIID 347 (364)
T ss_dssp HHHHHHHHGGGSSSHHHHHHCCSSTTTSCTTCEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCchHHHHHhccccCcccCCCcEEEEEEcCCCCCCeEEE
Confidence 9999999999884 33322 2789976666654 55555544
No 31
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.77 E-value=1.4e-18 Score=161.78 Aligned_cols=142 Identities=16% Similarity=0.027 Sum_probs=103.1
Q ss_pred cEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCcccccccccccC
Q psy673 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHA 376 (512)
Q Consensus 297 ~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~~~~~~L~E~~~ 376 (512)
|+|||||||++++|..+....|+|||+.|++||+.++++|.+.+..++.|||||+.||+|||+.+... .....+.+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~-~~~~~~~~~~- 78 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS-GLSCQLEESN- 78 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT-TSCSCEEECG-
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc-CCCCCeEECc-
Confidence 58999999999998654333399999999999999999999887778899999999999999999753 1111111110
Q ss_pred CcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhCCCch
Q psy673 377 GICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 456 (512)
Q Consensus 377 G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g~~~~ 456 (512)
.+ + .+++..++..++..+. .....++++||+|..++..|++++.+.+..
T Consensus 79 ----~L------------------------~-~~~~~~~~~~~l~~~~--~~~~~~~vllVgH~P~l~~l~~~L~~~~~~ 127 (172)
T 3f2i_A 79 ----HL------------------------A-PNGNIFNWLDYWLKPK--NFPENAQIAIVGHEPCLSNWTEILLWGEAK 127 (172)
T ss_dssp ----GG------------------------S-TTCCHHHHHHHTHHHH--CCCTTCEEEEEECTTHHHHHHHHHHHSSCC
T ss_pred ----cc------------------------C-CccCHHHHHHHHHHhc--cCCCCCEEEEEeCChHHHHHHHHHhcCCcc
Confidence 00 0 1244555444443322 124467999999999999999999986653
Q ss_pred hhcc-cCCCceEEEEEEe
Q psy673 457 RFAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 457 ~~~~-~ip~~sv~~l~~~ 473 (512)
.. .+|.++++.|++.
T Consensus 128 --~~~~~~t~~i~~l~~~ 143 (172)
T 3f2i_A 128 --DSLVLKKAGMIGLKLP 143 (172)
T ss_dssp --CCBCCCTTCEEEEECC
T ss_pred --cccccCCceEEEEEeC
Confidence 23 8999999999975
No 32
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.65 E-value=2.7e-16 Score=148.10 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=99.2
Q ss_pred CCcEEEEecccccccccccccCCCCCCCHHHHHHHHHhhhhhhhcCCCCcEEEeCcHHHHHHHHhHcccCc--ccccccc
Q psy673 295 TPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSH--KEYKALD 372 (512)
Q Consensus 295 ~~~~I~LVRHGes~~n~~~~~~gD~pLTe~G~~qA~~l~~~L~~~~~~~~~V~tSpl~RaiqTA~~i~~~~--~~~~~L~ 372 (512)
.+++|||||||+++++.. +.|.|||++|++||+.++++|.+.++.++.|||||+.||+|||+.+.... ...+.|-
T Consensus 18 ~~k~L~L~RHaka~~~~~---D~dRpLt~~G~~~a~~~~~~l~~~~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ly 94 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVR---DHDRPLTPDGVRAATAAGQWLRGHLPAVDVVVCSTAARTRQTLAATGISAQVRYRDELY 94 (186)
T ss_dssp CCEEEEEEECCCBCCCSS---GGGCCBCHHHHHHHHHHHHHHHHHSCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGGGT
T ss_pred CCcEEEEEECCccCCCCC---CCCCCCCHHHHHHHHHhhhHhhhcccCCCccccCcchhHHHHHHhhccccccccccccc
Confidence 357999999999998632 23899999999999999999999988889999999999999999876422 1111110
Q ss_pred cccCCcCCCCCHHHHHHhchHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHhHhCCCeEEEEeChHHHHHHHHHhhC
Q psy673 373 DIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQE 452 (512)
Q Consensus 373 E~~~G~~eg~t~~ei~~~~p~~~~~~~~d~~~~~~p~gES~~d~~~Rv~~~i~el~~~~~~vlIVsH~~vir~ll~~l~g 452 (512)
+ .+..+ +..++.++....++++||+|...+..+..++.+
T Consensus 95 ~-------------------------------------~~~~~----~l~~i~~~~~~~~~vllvGHnP~l~~l~~~L~~ 133 (186)
T 4hbz_A 95 G-------------------------------------GGVDE----ILAEVAAVPADASTVLVVGHAPTIPATGWELVR 133 (186)
T ss_dssp T-------------------------------------CCHHH----HHHHHHTSCTTCSEEEEEECTTHHHHHHHHHHH
T ss_pred c-------------------------------------cChHH----HHHHHHhccCCCCeeeecccCCCHHHHHHHHhc
Confidence 0 01111 223444454556799999999999999999887
Q ss_pred CCchh----------hcc-cCCCceEEEEEEe
Q psy673 453 EPPDR----------FAY-KVRKKTHFLLSSR 473 (512)
Q Consensus 453 ~~~~~----------~~~-~ip~~sv~~l~~~ 473 (512)
..... ... .+|.+++..|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~fpTa~~avl~~~ 165 (186)
T 4hbz_A 134 QSLLNRDADPSSGAGDELRHFAAGTFAVLSTT 165 (186)
T ss_dssp HHHHHTTCCTTCCTTGGGGCCCTTCEEEEEES
T ss_pred cccccccchhhhhhHhhhcCCCCeEEEEEECC
Confidence 43221 112 6899999988875
No 33
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.27 E-value=2.5e-11 Score=127.84 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=67.8
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHh
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQ 251 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~ 251 (512)
|..+|+|+||.+...|..+.+ ++++.++.+.+|.+.|+.+.+++|+..|... ...-.+.+.+. +..+.+.
T Consensus 309 g~~vIiD~~~~~~~~r~~~~~-~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~-~~~~~~~~~~~--------~~~~~~~ 378 (416)
T 3zvl_A 309 GKRVVIDNTNPDVPSRARYIQ-CAKDAGVPCRCFNFCATIEQARHNNRFREMT-DPSHAPVSDMV--------MFSYRKQ 378 (416)
T ss_dssp TCCEEEESCCCSHHHHHHHHH-HHHHHTCCEEEEEECCCHHHHHHHHHHHHHH-CTTCCCCCHHH--------HHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-HHHHcCCeEEEEEEeCCHHHHHHHHHhhccc-CCCcCCCCHHH--------HHHHHHh
Confidence 889999999999999999999 8999999999999999998888888776443 22222334444 6666777
Q ss_pred ceecc-cCCcceEEEEecC
Q psy673 252 YQTLT-EDHLSYMQIYNVG 269 (512)
Q Consensus 252 yepl~-~~e~~yik~~n~g 269 (512)
|||++ ++...+|..+|.-
T Consensus 379 ~e~P~~~E~fd~v~~v~~~ 397 (416)
T 3zvl_A 379 FEPPTLAEGFLEILEIPFR 397 (416)
T ss_dssp CCCCCGGGTCSEEEEECCC
T ss_pred cCCCCcccCCcEEEEEecc
Confidence 88887 5667777776653
No 34
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.23 E-value=5e-11 Score=109.29 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=80.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH-HhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR-YLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~-~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
|.+|+++|.||+||||+|+.|++ .+++ .+++.+..|..+.+.+ .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~-----~~i~~d~~r~~~~~~~---~--------------------------- 46 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF-----YNINRDDYRQSIMAHE---E--------------------------- 46 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE-----EEECHHHHHHHHTTSC---C---------------------------
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc-----EEecHHHHHHHhhCCC---c---------------------------
Confidence 57899999999999999999998 4543 4555566665443300 0
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEcCCChhHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWII--KGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~--~~g~~~i~Datn~~~~~R~~~~ 191 (512)
.. ...|+. ........+. ...+...+. +.|..+|+|+++.+.+.|+.+.
T Consensus 47 ----------------------~~-~~~~~~---~~~~~~~~~~---~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~ 97 (181)
T 1ly1_A 47 ----------------------RD-EYKYTK---KKEGIVTGMQ---FDTAKSILYGGDSVKGVIISDTNLNPERRLAWE 97 (181)
T ss_dssp ----------------------GG-GCCCCH---HHHHHHHHHH---HHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHH
T ss_pred ----------------------cc-hhhhch---hhhhHHHHHH---HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHH
Confidence 00 011221 1111111111 122333441 5689999999999999999898
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
+ ++...|+++++|.+.|+.+.+++|+..|
T Consensus 98 ~-~~~~~~~~~~~i~l~~~~~~~~~R~~~R 126 (181)
T 1ly1_A 98 T-FAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (181)
T ss_dssp H-HHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred H-HHHHcCCCEEEEEEeCCHHHHHHHHhcc
Confidence 8 7888899888888889987777777654
No 35
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.08 E-value=2.3e-09 Score=99.37 Aligned_cols=122 Identities=13% Similarity=0.209 Sum_probs=73.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..+.+|+++|.||+||||+|+.|++.|++ .+++.+..|..+.+ .
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-----~~i~~D~~~~~~~~-~------------------------------ 46 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL-----PLLSKDAFKEVMFD-G------------------------------ 46 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHH-H------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEecHHHHHHHHHH-h------------------------------
Confidence 35689999999999999999999999854 34555555543332 0
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHH-HHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDL-DDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~-~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
+ +.............+...+.+. ...++ .|..+|+|+++....++..+.
T Consensus 47 ----------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~vi~d~~~~~~~~~~~~~ 96 (193)
T 2rhm_A 47 ----------------------------L-GWSDREWSRRVGATAIMMLYHTAATILQ-SGQSLIMESNFRVDLDTERMQ 96 (193)
T ss_dssp ----------------------------H-CCCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEECCCHHHHHHHHH
T ss_pred ----------------------------c-CccchHHHHHhhHHHHHHHHHHHHHHHh-CCCeEEEecCCCCHHHHHHHH
Confidence 0 0000000011111111222222 22333 377889999995444445555
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
+ +....+.++++|.+.|+.+.+++|..+|
T Consensus 97 ~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 97 N-LHTIAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp H-HHHHSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred H-HHHhcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 5 6666678888889999987777776654
No 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.01 E-value=6.1e-09 Score=102.44 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+.+|+++|+||+||||+|+.|+++|...|...-+++.+..|..+.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~--------------------------------- 49 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV--------------------------------- 49 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---------------------------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---------------------------------
Confidence 35789999999999999999999998776655444466666622111
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
|++.... ..+ .+.... +...+. . ..+|+|+++...+.|..+.+
T Consensus 50 ----------------------------~~~~~e~--~~~-~~~~~~---i~~~l~-~-~~vIiD~~~~~~~~~~~l~~- 92 (260)
T 3a4m_A 50 ----------------------------WKEKYEE--FIK-KSTYRL---IDSALK-N-YWVIVDDTNYYNSMRRDLIN- 92 (260)
T ss_dssp ----------------------------CCGGGHH--HHH-HHHHHH---HHHHHT-T-SEEEECSCCCSHHHHHHHHH-
T ss_pred ----------------------------hhHHHHH--HHH-HHHHHH---HHHHhh-C-CEEEEeCCcccHHHHHHHHH-
Confidence 2222111 111 111111 222233 2 88999999999999999988
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
++...+.+.++|.+.|+.+.+++|+.+|
T Consensus 93 ~a~~~~~~~~vi~l~~~~e~~~~R~~~R 120 (260)
T 3a4m_A 93 IAKKYNKNYAIIYLKASLDVLIRRNIER 120 (260)
T ss_dssp HHHHTTCEEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEEeCCHHHHHHHHHhC
Confidence 7888899888899999998877777543
No 37
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.95 E-value=1.3e-09 Score=108.76 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=80.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDW 114 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~ 114 (512)
|.+|+++|.||+||||+|+.|++.+ .+..+++.|..|..+.+.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~-------------------------------- 45 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHE-------------------------------- 45 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSC--------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCC--------------------------------
Confidence 5689999999999999999999853 1234566677775443200
Q ss_pred HhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEcCCChhHHHHHHHHH
Q psy673 115 IIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWII--KGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~--~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
.| . . +-|+ ........++. ...+...+. +.|..+|+|+++.+.+.|..+.+
T Consensus 46 ------------------~g-~-~-~~~~---~~~~~~~~~~~---~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~ 98 (301)
T 1ltq_A 46 ------------------ER-D-E-YKYT---KKKEGIVTGMQ---FDTAKSILYGGDSVKGVIISDTNLNPERRLAWET 98 (301)
T ss_dssp ------------------CC-C-----CC---HHHHHHHHHHH---HHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHH
T ss_pred ------------------cc-c-c-cccc---hhhhhHHHHHH---HHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHH
Confidence 00 0 0 0111 11111111111 122223331 56899999999999999999988
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
+++..++++++|.+.|+.+.+++|+..|
T Consensus 99 -~~~~~~~~~~~i~l~~~~e~~~~R~~~R 126 (301)
T 1ltq_A 99 -FAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (301)
T ss_dssp -HHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred -HHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence 7888899988999999887777777654
No 38
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=2.8e-08 Score=91.85 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|..+|+|+...+.+.++.+.+ .+......-++|-+.|+++.+++|...|.... +-.+.+ ...+.+|++.|.+
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~--~r~~~~----~~~~~~~~~~~~~ 157 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNK-TMDGKADVSFVLFFDCNNEICIERCLERGKSS--GRSDDN----RESLEKRIQTYLQ 157 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS--SCCSCC----HHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHH-HhcccCCCCEEEEEECCHHHHHHHHHcccccC--CCCCCC----HHHHHHHHHHHHH
Confidence 3778999999998887777766 44432223356677899888877777653321 111212 3456677877777
Q ss_pred hceec
Q psy673 251 QYQTL 255 (512)
Q Consensus 251 ~yepl 255 (512)
..+|+
T Consensus 158 ~~~~~ 162 (196)
T 1tev_A 158 STKPI 162 (196)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76664
No 39
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.83 E-value=3.4e-08 Score=92.66 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh-hcccCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR-HASISSATHDFFRSDNEYALSIRDQIALQALE 109 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~-~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~ 109 (512)
+...++.|+++|.||+||||+|+.|++.+++ .+++.|..-|. ..+.. ....
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~-----~~i~~d~~~r~~~~~~~-----------~~g~------------ 67 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGI-----PQISTGELFRRNIEEGT-----------KLGV------------ 67 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHHTTC-----------HHHH------------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----cEEehhHHHHHHHHcCC-----------hHHH------------
Confidence 4556789999999999999999999999854 34555544322 22201 1111
Q ss_pred HHHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHH
Q psy673 110 DLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNT 189 (512)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~ 189 (512)
.+.+++.+|.-+ |+ . . ....+.+...... .|..+|+|++..+...+..
T Consensus 68 ~i~~~~~~g~~~--------------------~~----~---~----~~~~~~~~~~~~~-~~~~vIldg~~~~~~~~~~ 115 (201)
T 2cdn_A 68 EAKRYLDAGDLV--------------------PS----D---L----TNELVDDRLNNPD-AANGFILDGYPRSVEQAKA 115 (201)
T ss_dssp HHHHHHHHTCCC--------------------CH----H---H----HHHHHHHHTTSGG-GTTCEEEESCCCSHHHHHH
T ss_pred HHHHHHHcCCcc--------------------cH----H---H----HHHHHHHHHhccc-CCCeEEEECCCCCHHHHHH
Confidence 122233222111 10 0 0 1111111111112 2556899998888888777
Q ss_pred HHHHHHhhcCce-EEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecccCCcceEEEEec
Q psy673 190 IHHKIVEERQYM-LFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDHLSYMQIYNV 268 (512)
Q Consensus 190 ~~~~~~~~~~~~-~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~~~e~~yik~~n~ 268 (512)
+.+ ++...+.. .++|.+.|+.+.+++|...| . .+| + ....+.+|++.|.+..+|+.+.....+.++|.
T Consensus 116 l~~-~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R-~--r~~----~---~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~ 184 (201)
T 2cdn_A 116 LHE-MLERRGTDIDAVLEFRVSEEVLLERLKGR-G--RAD----D---TDDVILNRMKVYRDETAPLLEYYRDQLKTVDA 184 (201)
T ss_dssp HHH-HHHHTTCCCCEEEEEECCHHHHHHHHHHH-C--CTT----C---SHHHHHHHHHHHHHHTTTHHHHTTTTEEEEEC
T ss_pred HHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcC-C--CCC----C---CHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeC
Confidence 777 66666643 36788889987776666543 1 122 1 22467788888877766654321223334454
Q ss_pred C
Q psy673 269 G 269 (512)
Q Consensus 269 g 269 (512)
.
T Consensus 185 ~ 185 (201)
T 2cdn_A 185 V 185 (201)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.81 E-value=8.5e-08 Score=95.82 Aligned_cols=180 Identities=13% Similarity=0.161 Sum_probs=101.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
...+.+|+++|.||+||||+|+.|+..++. ....++.|..|..+.+ ...+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~D~~R~~~~~---------------~~~~~~---------- 81 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTFKQQHPN---------------FDELVK---------- 81 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHHHTTSTT---------------HHHHHH----------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechHhHHhchh---------------hHHHHH----------
Confidence 445789999999999999999999987731 2344566677744332 000000
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
.+... ....+ ..........++..++.. |..+|+|+++.....|..+.
T Consensus 82 -~~~~~--------------------a~~~~---~~~~~~~~~~~v~~~l~~--------g~~vIld~~~~~~~~~~~~~ 129 (287)
T 1gvn_B 82 -LYEKD--------------------VVKHV---TPYSNRMTEAIISRLSDQ--------GYNLVIEGTGRTTDVPIQTA 129 (287)
T ss_dssp -HHGGG--------------------CHHHH---HHHHHHHHHHHHHHHHHH--------TCCEEECCCCCCSHHHHHHH
T ss_pred -Hccch--------------------hhhhh---hHHHHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHH
Confidence 00000 00000 000001112222333333 88899999999998888888
Q ss_pred HHHHhhcCceEEEEEEEeCCHHH----HHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc-cCCcceEEEE
Q psy673 192 HKIVEERQYMLFFVESLCDDPDI----LDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT-EDHLSYMQIY 266 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~----~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~-~~e~~yik~~ 266 (512)
+ ++++.|+++.++-+.|+.+.. ++|+..|... +.-+.-..+++......+|+..- .+.+. .....|+.+.
T Consensus 130 ~-~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~-g~l~~R~~~~e~~~~i~~rl~~a---~~el~~~~~~d~v~v~ 204 (287)
T 1gvn_B 130 T-MLQAKGYETKMYVMAVPKINSYLGTIERYETMYAD-DPMTARATPKQAHDIVVKNLPTN---LETLHKTGLFSDIRLY 204 (287)
T ss_dssp H-HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CTTTCCCCCHHHHHHHHHHHHHH---HHHHHHHTCCSCEEEE
T ss_pred H-HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHHHH---HHHHHcCCCCCeEEEE
Confidence 8 788899998788889998766 4555444332 22123334444445555555432 22232 3445677776
Q ss_pred ecCceeEecc
Q psy673 267 NVGKRIVVHN 276 (512)
Q Consensus 267 n~g~~~~~~~ 276 (512)
|-...++..+
T Consensus 205 d~~g~~ly~~ 214 (287)
T 1gvn_B 205 NREGVKLYSS 214 (287)
T ss_dssp CTTCCEEEET
T ss_pred eCCCCEeecc
Confidence 6544444444
No 41
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.77 E-value=1.1e-08 Score=94.11 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHcCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 168 IIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 168 l~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
+..+|.++|+|+++...+.+..+.+ .+.+.|+.+.+|.+.|+.+.+++|...|
T Consensus 73 l~~~g~~vi~d~~~~~~~~~~~~~~-~l~~~~~~~~~i~l~~~~e~~~~R~~~R 125 (183)
T 2vli_A 73 SREAAGPLIVPVSISDTARHRRLMS-GLKDRGLSVHHFTLIAPLNVVLERLRRD 125 (183)
T ss_dssp HHHCSSCEEEEECCCCHHHHHHHHH-HHHHTTCCCEEEEEECCHHHHHHHHHTC
T ss_pred HHhCCCcEEEeeeccCHHHHHHHHH-HHHhcCCceEEEEEeCCHHHHHHHHHhc
Confidence 3446888999999999888888888 6777777767788889887766666543
No 42
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.73 E-value=4.2e-08 Score=90.86 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=81.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..+.+|+++|.||+||||+++.|+..|+..|....+++.+..|..+.+ .
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~-~------------------------------ 59 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE-G------------------------------ 59 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTT-T------------------------------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhh-c------------------------------
Confidence 456889999999999999999999999887777666666666533221 0
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
..|++ ..|..... .+..+...+.+.|.++|+|+++.....|+.+.+
T Consensus 60 ---------------------------~~~~~------~~r~~~~~-~~~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~ 105 (186)
T 2yvu_A 60 ---------------------------AGFTR------EERLRHLK-RIAWIARLLARNGVIVICSFVSPYKQARNMVRR 105 (186)
T ss_dssp ---------------------------CCCCH------HHHHHHHH-HHHHHHHHHHTTTCEEEEECCCCCHHHHHHHHH
T ss_pred ---------------------------cCCCh------hhHHHHHH-HHHHHHHHHHhCCCEEEEeCccccHHHHHHHHH
Confidence 01111 11111111 111222223345889999999988888888888
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
++...+.+.++|-+.|+.+.+++|.
T Consensus 106 -~~~~~~~~~~~v~L~~~~e~~~~R~ 130 (186)
T 2yvu_A 106 -IVEEEGIPFLEIYVKASLEEVIRRD 130 (186)
T ss_dssp -HHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred -HhhccCCCeEEEEEeCCHHHHHHhh
Confidence 7777788888889999987777765
No 43
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.73 E-value=3.8e-08 Score=92.43 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=36.6
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHH
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKE 221 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~ 221 (512)
..|..+|+|+++...+.|+.+.+ ++ +.++++|.+.|+.+.+++|...|
T Consensus 84 ~~~~~vivd~~~~~~~~~~~l~~-~~---~~~~~vi~l~~~~e~~~~Rl~~R 131 (202)
T 3t61_A 84 ASREPVVVSCSALKRSYRDKLRE-SA---PGGLAFVFLHGSESVLAERMHHR 131 (202)
T ss_dssp TSSSCCEEECCCCSHHHHHHHHH-TS---TTCCEEEEEECCHHHHHHHHHHH
T ss_pred hcCCCEEEECCCCCHHHHHHHHH-hc---CCCeEEEEEeCCHHHHHHHHHHh
Confidence 35888999999999988887766 43 45567777889987777777654
No 44
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.72 E-value=1.4e-07 Score=87.65 Aligned_cols=89 Identities=9% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|..+|+|+...+.+.+..+.+ .....+ ++|-+.|+.+.+++|...| .. .....++...+|.+|+..|..
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~-~~~~~~---~~i~l~~~~~~~~~R~~~R-~~-----~~~~~~~~~~~~~~r~~~~~~ 159 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGR-RIGDPQ---LVICMDCSADTMTNRLLQM-SR-----SSLPVDDTTKTIAKRLEAYYR 159 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHH-HTCCCS---EEEEEECCHHHHHHHHHHT-CC-----CCSCHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHH-hcCCCC---EEEEEECCHHHHHHHHHcC-CC-----CCCCCCCCHHHHHHHHHHHHH
Confidence 4789999998888877766654 222223 3444457776555554432 11 112344456789999988877
Q ss_pred hceeccc--CCcceEEEEecC
Q psy673 251 QYQTLTE--DHLSYMQIYNVG 269 (512)
Q Consensus 251 ~yepl~~--~e~~yik~~n~g 269 (512)
..+|+.+ .+...+.++|..
T Consensus 160 ~~~~~~~~~~~~~~~~~id~~ 180 (199)
T 2bwj_A 160 ASIPVIAYYETKTQLHKINAE 180 (199)
T ss_dssp HHHHHHHHHHHHSEEEEEETT
T ss_pred HHHHHHHHHHhcCCEEEEECC
Confidence 7776432 122344455643
No 45
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.68 E-value=2e-07 Score=85.91 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|.++|+|+...+.+.+..+.+ .+.....+-++|-+.|+.+.+++|...| ... .+ ..++...++.+|++.|.+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~~~~vi~l~~~~e~~~~R~~~R-~~~-~~----r~~~~~~~~~~ri~~~~~ 154 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLFFDCPEEVMTQRLLKR-GES-SG----RSDDNIESIKKRFNTFNV 154 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHH-HTT-SC----CTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHH-HHhccCCCCEEEEEECCHHHHHHHHHhc-ccc-CC----CCCCCHHHHHHHHHHHHH
Confidence 5789999998888887777776 4543222234556678887777776654 221 11 122234568888888776
Q ss_pred hceecc
Q psy673 251 QYQTLT 256 (512)
Q Consensus 251 ~yepl~ 256 (512)
..+|+.
T Consensus 155 ~~~~~~ 160 (194)
T 1qf9_A 155 QTKLVI 160 (194)
T ss_dssp THHHHH
T ss_pred hHHHHH
Confidence 655543
No 46
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.65 E-value=1.9e-07 Score=91.33 Aligned_cols=129 Identities=11% Similarity=0.115 Sum_probs=78.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
...+.+|+++|.||+||||+|+.|++.++. ...+++.+..|+.+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~r~~~~~~------------------------------ 75 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSFRSQHPHY------------------------------ 75 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGGGTTSTTH------------------------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHHHHhchhH------------------------------
Confidence 445789999999999999999999998852 33445666666432210
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHH-HHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALS-IRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTI 190 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~-~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~ 190 (512)
..+.. . +........+ ...+++ ..+...+.+.|..+|+|+++.+...|..+
T Consensus 76 -~~i~~------------------~-----~g~~~~~~~~~~~~~~~----~~~~~~~~~~g~~vVid~~~~~~~~~~~~ 127 (253)
T 2p5t_B 76 -LELQQ------------------E-----YGKDSVEYTKDFAGKMV----ESLVTKLSSLGYNLLIEGTLRTVDVPKKT 127 (253)
T ss_dssp -HHHHT------------------T-----CSSTTHHHHHHHHHHHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred -HHHHH------------------H-----cCchHHHHhhHHHHHHH----HHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 00000 0 0011111001 011111 22222232347788999999998888888
Q ss_pred HHHHHhhcCceEEEEEEEeCCHHHHHHHHHHH
Q psy673 191 HHKIVEERQYMLFFVESLCDDPDILDRNIKEV 222 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~ 222 (512)
.+ ++++.|+.+.++-+.|+.+..++|...|.
T Consensus 128 ~~-~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 128 AQ-LLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HH-HHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HH-HHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 88 78889998877777887766666665553
No 47
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.64 E-value=7.8e-08 Score=91.58 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHH--HHHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQA--LEDLDD 113 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~--~~~~~~ 113 (512)
+.|++.|-||+||+|.|+.|++.+++.++ +.|+.-|. .+...+ -+.+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~i-----stGdllR~------------------------~i~~~t~lg~~~~~ 51 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHI-----STGDILRE------------------------AVQKGTPLGKKAKE 51 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHH------------------------HHHHTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEE-----cHHHHHHH------------------------HHHhcChhhhhHHH
Confidence 46899999999999999999999966544 44433222 111100 012344
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
++.+|.-|| . +.--.+. .+.|.+ .+..|+|.--.|.++-+.+.+
T Consensus 52 ~~~~G~lvp-------------------------d--~iv~~lv-------~~~l~~-~~~~ilDGfPRt~~Qa~~l~~- 95 (206)
T 3sr0_A 52 YMERGELVP-------------------------D--DLIIALI-------EEVFPK-HGNVIFDGFPRTVKQAEALDE- 95 (206)
T ss_dssp HHHHTCCCC-------------------------H--HHHHHHH-------HHHCCS-SSCEEEESCCCSHHHHHHHHH-
T ss_pred HHhcCCcCC-------------------------H--HHHHHHH-------HHhhcc-CCceEecCCchhHHHHHHHHh-
Confidence 555565554 0 1111221 222311 345899998888888777766
Q ss_pred HHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhcCC--CC------------CCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 194 IVEERQYML-FFVESLCDDPDILDRNIKEVKLTGP--DY------------QGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 194 ~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~~~--dy------------~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
.....+.++ .+|+..|+++.+++|...|+.+... .| .-...++...-+++|++.|.+...|+-
T Consensus 96 ~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 96 MLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp HHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred hHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677777654 6788899999888888766432110 00 012445556678999999999988875
No 48
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.59 E-value=2e-07 Score=88.30 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhc----------C-CCCCC-------
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLT----------G-PDYQG------- 231 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~----------~-~dy~~------- 231 (512)
.|..+|+|+...+.+.+..+.+ .+...+..+ ++|.+.|+++.+++|...|+.+. + |...+
T Consensus 77 ~~~~~ildg~p~~~~~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3dl0_A 77 CERGFLLDGFPRTVAQAEALEE-ILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155 (216)
T ss_dssp GTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCEEEeCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence 3778999998888888887877 677677654 67888999988777776552110 0 00000
Q ss_pred ---CChhHHHHHHHHHHHHhhHhceecc
Q psy673 232 ---FEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 232 ---~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
...++....+.+|++.|.+..+|+.
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3dl0_A 156 ELYQRADDNEETVTKRLEVNMKQTAPLL 183 (216)
T ss_dssp BEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0123344578889999988888875
No 49
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.59 E-value=3.1e-07 Score=86.88 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHh------cCCCC-----CC-------
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKL------TGPDY-----QG------- 231 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~------~~~dy-----~~------- 231 (512)
.|..+|+|+...+.+.+..+.+ .+...+..+ ++|-+.|+++.+++|...|+.+ ++..| .+
T Consensus 77 ~~~~~ildg~p~~~~~~~~l~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3fb4_A 77 CQKGFLLDGFPRTVAQADALDS-LLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG 155 (216)
T ss_dssp GTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence 3778999998888888887777 677677654 6777889987777777654211 00011 00
Q ss_pred ---CChhHHHHHHHHHHHHhhHhceecc
Q psy673 232 ---FEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 232 ---~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
...++....+.+|++.|.+..+|+.
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 156 ELYQRIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp BEECCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 1134455678899999998888875
No 50
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.57 E-value=1.8e-07 Score=85.61 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCh-hHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHH
Q psy673 171 GGQVAFFDATNS-TQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIK 220 (512)
Q Consensus 171 ~g~~~i~Datn~-~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~ 220 (512)
.|..+|+|+++. ....|+.+.+ .+. +.++++|.+.|+.+++++|...
T Consensus 85 ~g~~vi~~~~~~~~~~~~~~~~~-~~~--~~~~~~v~l~~~~e~l~~R~~~ 132 (178)
T 1qhx_A 85 AGARIIIDDVFLGGAAAQERWRS-FVG--DLDVLWVGVRCDGAVAEGRETA 132 (178)
T ss_dssp TTCEEEEEECCTTTHHHHHHHHH-HHT--TCCEEEEEEECCHHHHHHHHHH
T ss_pred cCCeEEEEeccccChHHHHHHHH-Hhc--CCcEEEEEEECCHHHHHHHHHh
Confidence 478899999986 4455666777 453 4566777788987766666543
No 51
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.54 E-value=4.2e-07 Score=83.67 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=46.0
Q ss_pred EEEcCCChhHHHHHHHHHHHHhhcCce-EEEEEEEeCCHHHHHHHHHHHHh-cCCCCCCCChhHHHHHHHHHHHHhhHhc
Q psy673 175 AFFDATNSTQARRNTIHHKIVEERQYM-LFFVESLCDDPDILDRNIKEVKL-TGPDYQGFEPDKAYEDFMYRIGHYEKQY 252 (512)
Q Consensus 175 ~i~Datn~~~~~R~~~~~~~~~~~~~~-~~~~e~~~~d~~~~~~n~~~~~~-~~~dy~~~~~~~a~~df~~R~~~~~~~y 252 (512)
+|+|+...+.+.+..+.+ ++.+.|.. -++|-+.|+.+.+++|...|... ..++ .+ ...|.+|++.|.+..
T Consensus 80 ~i~dg~~~~~~~~~~l~~-~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~---~~----~~~~~~r~~~~~~~~ 151 (186)
T 3cm0_A 80 VIFDGFPRTLAQAEALDR-LLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSD---DN----EETVRRRLEVYREKT 151 (186)
T ss_dssp EEEESCCCSHHHHHHHHH-HHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSS---CC----HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCC---CC----HHHHHHHHHHHHHHH
Confidence 899998888777766665 66666653 36777889987777776655321 1111 12 235677777766554
Q ss_pred eec
Q psy673 253 QTL 255 (512)
Q Consensus 253 epl 255 (512)
.|+
T Consensus 152 ~~l 154 (186)
T 3cm0_A 152 EPL 154 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 52
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.50 E-value=6.4e-07 Score=87.06 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=102.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
...+.+|++.|.||+||||+|+.|++.++. .++++|..-|.... . ..... +.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~-----~~is~~~~~r~~~~-~---------~~~~g------------~~i 78 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY-----CHLSTGDLLREAAE-K---------KTELG------------LKI 78 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHTT-S---------SSHHH------------HHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCC-----eEEecHHHHHHHHh-c---------cchHH------------HHH
Confidence 457889999999999999999999998844 44555544333211 0 11111 123
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
..++.+|.-++ . +.-..+....+.. .+.+..+|+|+...+.++...+.
T Consensus 79 ~~~~~~g~~~~----------------------~-----~~~~~~~~~~l~~-----~~~~~~~ildg~p~~~~q~~~l~ 126 (243)
T 3tlx_A 79 KNIINEGKLVD----------------------D-----QMVLSLVDEKLKT-----PQCKKGFILDGYPRNVKQAEDLN 126 (243)
T ss_dssp HHHHHTTCCCC----------------------H-----HHHHHHHHHHTTS-----GGGSSEEEEESCCCSHHHHHHHH
T ss_pred HHHHhcCCCCc----------------------H-----HHHHHHHHHHHhc-----ccccCCEEecCCCCcHHHHHHHH
Confidence 34444432222 1 1111111111111 23477899999777877777777
Q ss_pred HHHHhhcCce-EEEEEEEeCCHHHHHHHHHHHHhc----------CC-------CCCC----CChhHHHHHHHHHHHHhh
Q psy673 192 HKIVEERQYM-LFFVESLCDDPDILDRNIKEVKLT----------GP-------DYQG----FEPDKAYEDFMYRIGHYE 249 (512)
Q Consensus 192 ~~~~~~~~~~-~~~~e~~~~d~~~~~~n~~~~~~~----------~~-------dy~~----~~~~~a~~df~~R~~~~~ 249 (512)
+ ++...+.. -.+|-+.|+++.+++|...|..+. +| |-.+ ...++....+.+|++.|.
T Consensus 127 ~-~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~ 205 (243)
T 3tlx_A 127 K-LLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFK 205 (243)
T ss_dssp H-HHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred H-HHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHH
Confidence 6 56655543 366778999977777776553210 00 0000 133455678999999999
Q ss_pred Hhceeccc--CCcceEEEEecC
Q psy673 250 KQYQTLTE--DHLSYMQIYNVG 269 (512)
Q Consensus 250 ~~yepl~~--~e~~yik~~n~g 269 (512)
+..+|+.+ .+...+..+|..
T Consensus 206 ~~~~~l~~~y~~~~~~~~id~~ 227 (243)
T 3tlx_A 206 SETSPLISYYKNKNLLINLDAT 227 (243)
T ss_dssp HHTTHHHHHHHHTTCEEEEETT
T ss_pred HHHHHHHHHHHhcCcEEEEECC
Confidence 98888753 122234445543
No 53
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.49 E-value=1.1e-06 Score=81.21 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEK 250 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~ 250 (512)
.|..+|+|+...+.+.++.+.. .+.. +-++|-+.|+.+.+++|...| ....+ ..+....+|.+|++.|.+
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~-~~~~---~~~vi~l~~~~e~~~~R~~~R-~~~~~-----~~~~~~~~~~~r~~~~~~ 156 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFER-RIGQ---PTLLLYVDAGPETMTQRLLKR-GETSG-----RVDDNEETIKKRLETYYK 156 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHH-HTCC---CSEEEEEECCHHHHHHHHHHH-HTSSS-----CGGGSHHHHHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHH-hcCC---CCEEEEEECCHHHHHHHHHcc-CCcCC-----CCCCCHHHHHHHHHHHHH
Confidence 4788999997777666665555 3322 224455578876666665544 22111 223345577888888877
Q ss_pred hceeccc--CCcceEEEEecC
Q psy673 251 QYQTLTE--DHLSYMQIYNVG 269 (512)
Q Consensus 251 ~yepl~~--~e~~yik~~n~g 269 (512)
..+|+-+ ++..++.++|..
T Consensus 157 ~~~~~~~~~~~~~~~~~Id~~ 177 (196)
T 2c95_A 157 ATEPVIAFYEKRGIVRKVNAE 177 (196)
T ss_dssp HTHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHhcCcEEEEECC
Confidence 7666521 112344455543
No 54
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.49 E-value=5.6e-07 Score=85.56 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceE-EEEEEEeCCHHHHHHHHHHHHhc----------CC-CC------CC--
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYML-FFVESLCDDPDILDRNIKEVKLT----------GP-DY------QG-- 231 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~-~~~e~~~~d~~~~~~n~~~~~~~----------~~-dy------~~-- 231 (512)
|..+|+|+...+.+.++.+.+ ++...+..+ ++|.+.|+++.+++|...|.... +| .- .+
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~ 161 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQ-MLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 161 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred CCCeEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence 556889986556666666666 566666544 67777899877777765442110 00 00 00
Q ss_pred --CChhHHHHHHHHHHHHhhHhceeccc--CCcceEEEEecCc
Q psy673 232 --FEPDKAYEDFMYRIGHYEKQYQTLTE--DHLSYMQIYNVGK 270 (512)
Q Consensus 232 --~~~~~a~~df~~R~~~~~~~yepl~~--~e~~yik~~n~g~ 270 (512)
...++-...|.+|++.|.+..+|+-+ ++...+..+|+..
T Consensus 162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~ 204 (220)
T 1aky_A 162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ 204 (220)
T ss_dssp CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 01222345688889888877666421 1112345566543
No 55
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.48 E-value=3.9e-07 Score=87.44 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=91.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
+..+.+||+.|-||+||+|+|+.|++.+++.++ +.|+.-|.... . ....+ +.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI-----stGdllR~~i~-~---------~t~lg------------~~~ 78 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL-----SSGDLLRAEVQ-S---------GSPKG------------KEL 78 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE-----CHHHHHHHHHT-T---------CCHHH------------HHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE-----cHHHHHHHHHH-c---------CCchH------------HHH
Confidence 345568889999999999999999999966544 44443332221 0 01111 223
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
..++..|.-|| . +.--.+....+.. ..+...-.|+|.---|.++-..+.
T Consensus 79 ~~~~~~G~lVp-------------------------d--e~~~~lv~~~l~~----~~~~~~g~ilDGfPRt~~Qa~~l~ 127 (217)
T 3umf_A 79 KAMMERGELVP-------------------------L--EVVLALLKEAMIK----LVDKNCHFLIDGYPRELDQGIKFE 127 (217)
T ss_dssp HHHHHHTCCCC-------------------------H--HHHHHHHHHHHHH----HTTTCSEEEEETBCSSHHHHHHHH
T ss_pred HHHHhcCCCCC-------------------------H--HHHHHHHHHHHhh----ccccccCcccccCCCcHHHHHHHH
Confidence 44555665555 1 2222222222222 122356689999666665544433
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHhhHhceecc
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLT 256 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~a~~df~~R~~~~~~~yepl~ 256 (512)
+ .. .-..++|...|+++.+++|...|..+. ...++..+-+++|++.|.+.-+|+-
T Consensus 128 ~-~~---~~~~~vi~l~v~~e~~~~Rl~~R~~~~------~R~DD~~e~i~~Rl~~Y~~~t~pl~ 182 (217)
T 3umf_A 128 K-EV---CPCLCVINFDVSEEVMRKRLLKRAETS------NRVDDNEETIVKRFRTFNELTKPVI 182 (217)
T ss_dssp H-HT---CCCSEEEEEECCHHHHHHHHSCC------------CHHHHHHHHHHHHHHHHHTHHHH
T ss_pred H-hC---CccCEEEeccCCHHHHHHHHhcccccC------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 12 223356778899988888777664432 2445666778999999998888874
No 56
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.48 E-value=4e-07 Score=86.17 Aligned_cols=120 Identities=17% Similarity=0.042 Sum_probs=73.7
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh-hcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR-WLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALED 110 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 110 (512)
...+.+|+++|.||+||||+++.|+++|+ ..|+....++.+..|..+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~------------------------------ 71 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK------------------------------ 71 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc------------------------------
Confidence 34567899999999999999999999997 55655555554455422211
Q ss_pred HHHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHH
Q psy673 111 LDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTI 190 (512)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~ 190 (512)
...++. .......+.+.. .+...+. .|.++|+|.++..+..|+.+
T Consensus 72 ---------------------------~~~~~~---~~r~~~~~~~~~----~~~~~l~-~g~~VI~d~~~~~~~~~~~l 116 (211)
T 1m7g_A 72 ---------------------------DLGFSE---ADRNENIRRIAE----VAKLFAD-SNSIAITSFISPYRKDRDTA 116 (211)
T ss_dssp ---------------------------TCCSSH---HHHHHHHHHHHH----HHHHHHH-TTCEEEEECCCCCHHHHHHH
T ss_pred ---------------------------ccCCCH---HHHHHHHHHHHH----HHHHHHH-CCCEEEEecCCccHHHHHHH
Confidence 001111 111111122211 1112222 48899999765445667777
Q ss_pred HHHHHh------hcCceEEEEEEEeCCHHHHHH
Q psy673 191 HHKIVE------ERQYMLFFVESLCDDPDILDR 217 (512)
Q Consensus 191 ~~~~~~------~~~~~~~~~e~~~~d~~~~~~ 217 (512)
.+ ++. ..+.+.++|-+.|+.+.+++|
T Consensus 117 ~~-l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R 148 (211)
T 1m7g_A 117 RQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQR 148 (211)
T ss_dssp HH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTS
T ss_pred HH-HhhhcccccccCCCeEEEEEeCCHHHHHHh
Confidence 77 665 445778888899998777666
No 57
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.46 E-value=8.6e-07 Score=84.32 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCc-eEEEEEEEeCCHHHHHHHHHHHHhc----------C-CCCC--------
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQY-MLFFVESLCDDPDILDRNIKEVKLT----------G-PDYQ-------- 230 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~-~~~~~e~~~~d~~~~~~n~~~~~~~----------~-~dy~-------- 230 (512)
.|..+|+|+...+.+..+.+.+ ++...+. +.++|.+.|+++.+++|...|..+. + |.-.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 160 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAK-ILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE 160 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence 3677899986666666666655 4555553 3367778899877777665432110 0 0000
Q ss_pred --CCChhHHHHHHHHHHHHhhHhceeccc--CCcceEEEEecCc
Q psy673 231 --GFEPDKAYEDFMYRIGHYEKQYQTLTE--DHLSYMQIYNVGK 270 (512)
Q Consensus 231 --~~~~~~a~~df~~R~~~~~~~yepl~~--~e~~yik~~n~g~ 270 (512)
....++....+++|+..|.+..+|+-+ .+...+..+|+..
T Consensus 161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~ 204 (217)
T 3be4_A 161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKL 204 (217)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 012233455677888888777777521 1122345566643
No 58
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.39 E-value=9e-07 Score=97.25 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+.+|+++|+||+||||+|+.|++.|...|..+-.+..+..|..+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~--------------------------------- 97 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK--------------------------------- 97 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT---------------------------------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc---------------------------------
Confidence 57899999999999999999999999655545444444445532211
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
...|++. ...+..++++ ++...+.+.|.++|.|.++..+..|+.+.+
T Consensus 98 -------------------------~~~fs~~--dree~~r~i~-----eva~~~l~~G~iVI~d~~s~~~~~r~~~r~- 144 (630)
T 1x6v_B 98 -------------------------NLGFSPE--DREENVRRIA-----EVAKLFADAGLVCITSFISPYTQDRNNARQ- 144 (630)
T ss_dssp -------------------------TCCSSHH--HHHHHHHHHH-----HHHHHHHHTTCEEEEECCCCCHHHHHHHHH-
T ss_pred -------------------------cccCChh--hhHHHHHHHH-----HHHHHHHhCCCEEEEeCchhhHHHHHHHHH-
Confidence 0123321 1111111221 222223335899999977766677888888
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHHH
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRNI 219 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n~ 219 (512)
++...+.++++|-+.|+.+.+.+|..
T Consensus 145 ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 145 IHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred HHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 78888888999999999977766643
No 59
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.39 E-value=6.2e-07 Score=84.12 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+.+|+++|.+|+||||+++.|+..+++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4578999999999999999999998844
No 60
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.35 E-value=7.2e-06 Score=76.56 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
..+.+|+++|.||+||||+|+.|++.+++ .+++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHH
Confidence 34578999999999999999999998854 44555543
No 61
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.31 E-value=2e-06 Score=92.88 Aligned_cols=167 Identities=30% Similarity=0.472 Sum_probs=107.6
Q ss_pred CCCCeEEEEeCCCCCCccccc-----cccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhccc
Q psy673 7 TVTPQVVAMVGLPAREFSKMA-----FYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASI 81 (512)
Q Consensus 7 ~~~~~~~~~~glpar~~~~~~-----~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~ 81 (512)
...+.+|+|||+||+|||.++ ++.|.+.++.+|..|...+. + .+.. ..
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~--------------~--------~~~~----~~- 84 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE--------------A--------VKQY----SS- 84 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH--------------H--------HSCC----CC-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH--------------h--------ccCC----cc-
Confidence 446789999999999999754 46688999999998832111 0 0000 01
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHH
Q psy673 82 SSATHDFFRSDNEYALSIRDQIALQALEDLDDWI-IKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQA 160 (512)
Q Consensus 82 ~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~ 160 (512)
.+||++.+.+....|+.++..+++++..|| ...|.+. ++|++|.. ...|+.+...+
T Consensus 85 ----~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~g~~V------------------IvDat~~~-~~~R~~~~~~a 141 (520)
T 2axn_A 85 ----YNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQIA------------------VFDATNTT-RERRHMILHFA 141 (520)
T ss_dssp ----GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCEE------------------EEESCCCS-HHHHHHHHHHH
T ss_pred ----ccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCceE------------------EecCCCCC-HHHHHHHHHHH
Confidence 357888899999999999999999999999 3455554 78888766 24555554333
Q ss_pred HHHHHHHHHcCCcEEEEcCCChhHH-HHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCChhH
Q psy673 161 LEDLDDWIIKGGQVAFFDATNSTQA-RRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDK 236 (512)
Q Consensus 161 l~~~~~~l~~~g~~~i~Datn~~~~-~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~~~ 236 (512)
.+. +..+++++......+ .++.+........++. ..+.+++++...+|...+.+.|...+.++
T Consensus 142 ~~~-------g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~------~~d~e~~~~~~~~Ri~~y~~~Yepi~~ee 205 (520)
T 2axn_A 142 KEN-------DFKAFFIESVCDDPTVVASNIMEVKISSPDYK------DCNSAEAMDDFMKRISCYEASYQPLDPDK 205 (520)
T ss_dssp HHH-------TCEEEEEEEECCCHHHHHHHHHHHTTTSGGGT------TSCHHHHHHHHHHHHHHHHTTCCCCCTTT
T ss_pred HHc-------CCeEEEEEEeCChHHHHHHHHHhhhhcCCccc------cCCHHHHHHHHHHHHHhhhhhhcccChhh
Confidence 222 346778887655332 2233333112223333 23445677777677777778898887664
No 62
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.29 E-value=5.3e-06 Score=75.59 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+|+++|.||+||||+++.|+..+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 467999999999999999999998754
No 63
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.29 E-value=5e-06 Score=79.47 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=27.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.|++.|.||+||||+|+.|+..+++ .+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~ 34 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGI 34 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHH
Confidence 36899999999999999999998854 45555544
No 64
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.27 E-value=2.3e-06 Score=93.49 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=78.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcC-CcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLG-LNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~-~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
.+.+|++.|+||+||||+|+.|++.|++.| ..+..+..+..|+.+.+ .
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~-~------------------------------ 443 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS-E------------------------------ 443 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT-T------------------------------
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc-c------------------------------
Confidence 468899999999999999999999999877 66666666777754332 0
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
.-|+. ....+..+.+ .++...+.+.|.++|+|..+..++.|+.+.+
T Consensus 444 ---------------------------~~f~~--~er~~~i~ri-----~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~ 489 (573)
T 1m8p_A 444 ---------------------------LGFTR--EDRHTNIQRI-----AFVATELTRAGAAVIAAPIAPYEESRKFARD 489 (573)
T ss_dssp ---------------------------CCCSH--HHHHHHHHHH-----HHHHHHHHHTTCEEEEECCCCCHHHHHHHHH
T ss_pred ---------------------------cCCCh--hHHHHHHHHH-----HHHHHHHHhCCCEEEEEcCCCcHHHHHHHHH
Confidence 01211 0100111111 1223333345889999998888888888888
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDR 217 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~ 217 (512)
++...| .+++|-+.|+.+.+.+|
T Consensus 490 -l~~~~g-~~~~V~Lda~~ev~~~R 512 (573)
T 1m8p_A 490 -AVSQAG-SFFLVHVATPLEHCEQS 512 (573)
T ss_dssp -HHHTTS-EEEEEEECCCHHHHHHH
T ss_pred -HHHhcC-CeEEEEEeCCHHHHHHH
Confidence 677655 56777788988766655
No 65
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=4.3e-06 Score=78.30 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=73.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLD 112 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~ 112 (512)
..+.+|+++|.+|+||||+++.|+..|.+.|.-+..++.+..++.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~-------------------------------- 70 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR-------------------------------- 70 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc--------------------------------
Confidence 456899999999999999999999999754433224444444422111
Q ss_pred HHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHH
Q psy673 113 DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHH 192 (512)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~ 192 (512)
. . -|.+. .....++. +.++...+.+.|..+|.+..+..++.|+.+.+
T Consensus 71 -----------------------~--~-~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~ 117 (200)
T 3uie_A 71 -----------------------D--L-SFKAE--DRAENIRR-----VGEVAKLFADAGIICIASLISPYRTDRDACRS 117 (200)
T ss_dssp -----------------------T--C-CSSHH--HHHHHHHH-----HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHH
T ss_pred -----------------------c--c-CcChH--HHHHHHHH-----HHHHHHHHHhCCceEEEecCCchHHHHHHHHH
Confidence 0 0 01111 10111111 12222333345889999999999999988877
Q ss_pred HHHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 193 KIVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 193 ~~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
++. +..+++|.+.|+.+.+.+|.
T Consensus 118 -~~~--~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 118 -LLP--EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp -TSC--TTSEEEEEECCCHHHHHHHC
T ss_pred -hcC--CCCEEEEEEeCCHHHHHHhc
Confidence 554 45677788899987777764
No 66
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.18 E-value=1.1e-05 Score=73.92 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=33.6
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
.|.+++.+.+..-...|..+.+ +....++++++|-+.|+.+.+++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~ 122 (179)
T 2pez_A 76 AGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRD 122 (179)
T ss_dssp TTCEEEEECCCCCHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred CCCEEEEecCCcchHHHHHHHH-HhhccCCCeEEEEEeCCHHHHHHHH
Confidence 4777777766555555666666 6666778888888899987777664
No 67
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.17 E-value=2.4e-06 Score=78.57 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
+..|+++|.||+||||+|+.|++.|++ ..++.+..++...|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~-----~~i~~d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR-----ILYDSDKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC-----CEEEHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHHcC
Confidence 457899999999999999999999954 45566666655544
No 68
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.14 E-value=9.3e-06 Score=72.92 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=32.9
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHH
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIK 220 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~ 220 (512)
..+..+|+|+. .+.+.++.+.+ .+. .++++|-+.|+.+.+++|...
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~-~~~---~~~~~i~l~~~~~~~~~R~~~ 121 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKR-LLG---DSVYIVAVHSPPKIRYKRMIE 121 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHH-HHC---SCEEEEEEECCHHHHHHHHHT
T ss_pred cCCCeEEEeCC-CCHHHHHHHHH-HhC---CCcEEEEEECCHHHHHHHHHh
Confidence 46889999998 77777776666 343 566777778988666666543
No 69
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.11 E-value=8.4e-05 Score=71.45 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=29.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
.....+|++.|.||+||||+++.|+.+|+. |...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 446789999999999999999999999987 6533
No 70
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.08 E-value=8.3e-06 Score=77.82 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.+..|+++|.||+||||+|+.|++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 35 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKH 35 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 357899999999999999999999886533
No 71
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.07 E-value=1.1e-05 Score=77.54 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+..|++.|.||+||||+|+.|+..|++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999999864
No 72
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.06 E-value=6.3e-06 Score=89.50 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDD 113 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~ 113 (512)
.+.+|+++|+||+||||+|+.|++.|++.|..+.++..+..|+.+.+ .
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~-~------------------------------- 418 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR-G------------------------------- 418 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT-T-------------------------------
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc-c-------------------------------
Confidence 46789999999999999999999999987777777777766654433 0
Q ss_pred HHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHH
Q psy673 114 WIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193 (512)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~ 193 (512)
..|+. .+.....+.+ ..+...+.+.|..+|+|+++..++.|+.+.+
T Consensus 419 --------------------------~~f~~--~er~~~l~~i-----~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~- 464 (546)
T 2gks_A 419 --------------------------LGFSK--EDRITNILRV-----GFVASEIVKHNGVVICALVSPYRSARNQVRN- 464 (546)
T ss_dssp --------------------------CCSSH--HHHHHHHHHH-----HHHHHHHHHTTCEEEEECCCCCHHHHHHHHT-
T ss_pred --------------------------ccccH--HHHHHHHHHH-----HHHHHHHHhCCCEEEEEcCCCCHHHHHHHHH-
Confidence 01211 1101111112 1222223235889999999998888888777
Q ss_pred HHhhcCceEEEEEEEeCCHHHHHHH
Q psy673 194 IVEERQYMLFFVESLCDDPDILDRN 218 (512)
Q Consensus 194 ~~~~~~~~~~~~e~~~~d~~~~~~n 218 (512)
++.+.+ +++|-+.|+.+.+++|.
T Consensus 465 ~l~~~d--~~vV~L~~~~e~~~~Rl 487 (546)
T 2gks_A 465 MMEEGK--FIEVFVDAPVEVCEERD 487 (546)
T ss_dssp TSCTTC--EEEEEEECCGGGHHHHC
T ss_pred HhhcCC--EEEEEEeCCHHHHHHHh
Confidence 665533 45566678876666554
No 73
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.02 E-value=3.8e-05 Score=71.79 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.+|++.|.||+||||+++.|++.|++.+++++++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 367899999999999999999999999888777544
No 74
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.96 E-value=2.9e-05 Score=73.28 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
.|++.|.||+||||+|+.|++.+++ .+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence 5899999999999999999998843 44555443
No 75
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.95 E-value=1.7e-05 Score=76.64 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=89.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh-cccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH-ASISSATHDFFRSDNEYALSIRDQIALQALEDLDDW 114 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~-~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~ 114 (512)
+.+-+.|.||+||||+|+.|+..+++. .+++|+.-|.. ...+ .. -+.+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdllR~~~~~~t-----------~l------------G~~i~~~ 60 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDMLRAAVKAGT-----------PL------------GVEAKTY 60 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHHHHHHHHTTC-----------HH------------HHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHHHHHhccCCC-----------hH------------HHHHHHH
Confidence 567889999999999999999998554 44554333221 1100 11 1223445
Q ss_pred HhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHH
Q psy673 115 IIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKI 194 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~ 194 (512)
+.+|.-+| . +.-..+..+.+.. .+.+.-.|+|.---|.++-+.+
T Consensus 61 ~~~G~lvp-------------------------d--ei~~~ll~~~l~~-----~~~~~g~ILDGfPRt~~Qa~~L---- 104 (230)
T 3gmt_A 61 MDEGKLVP-------------------------D--SLIIGLVKERLKE-----ADCANGYLFDGFPRTIAQADAM---- 104 (230)
T ss_dssp HTTTCCCC-------------------------H--HHHHHHHHHHHHS-----GGGTTCEEEESCCCSHHHHHHH----
T ss_pred Hhhccccc-------------------------c--HHHHHHHHHHHhC-----cccCCCeEecCCCCcHHHHHHH----
Confidence 54444443 1 1111222222211 1123457999965665443322
Q ss_pred HhhcCc-eEEEEEEEeCCHHHHHHHHHHHHhcC----------C-------CCCC----CChhHHHHHHHHHHHHhhHhc
Q psy673 195 VEERQY-MLFFVESLCDDPDILDRNIKEVKLTG----------P-------DYQG----FEPDKAYEDFMYRIGHYEKQY 252 (512)
Q Consensus 195 ~~~~~~-~~~~~e~~~~d~~~~~~n~~~~~~~~----------~-------dy~~----~~~~~a~~df~~R~~~~~~~y 252 (512)
.+.+. .-++|...|+++.+++|...|+.+.. | |-.+ ..+++..+-+++|++.|.+.-
T Consensus 105 -~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t 183 (230)
T 3gmt_A 105 -KEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQT 183 (230)
T ss_dssp -HHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred -HHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHH
Confidence 23343 23677889999888888887653211 1 0000 256667778999999999998
Q ss_pred eecc
Q psy673 253 QTLT 256 (512)
Q Consensus 253 epl~ 256 (512)
.|+-
T Consensus 184 ~pl~ 187 (230)
T 3gmt_A 184 KPLI 187 (230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 76
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=7.7e-06 Score=76.49 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
....|+++|.||+||||+++.|++.|++ ..++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~-----~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV-----PFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcchHHHHH
Confidence 3458999999999999999999999954 34455554433
No 77
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.89 E-value=1e-05 Score=74.30 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=32.1
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.+|+++|.||+||||+|+.|++.|++ .+++.|..++...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~D~~~~~~~g 42 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV-----GLLDTDVAIEQRTG 42 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC-----CEEeCchHHHHHcC
Confidence 35899999999999999999999865 45667776665554
No 78
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.87 E-value=0.00011 Score=68.46 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=26.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
+.+|++.|.||+||||+|+.|++.|+..|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 56899999999999999999999998755
No 79
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.85 E-value=0.00014 Score=65.37 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+|++.|.||+||||+|+.|++.+++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37899999999999999999999864
No 80
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.84 E-value=3e-05 Score=73.61 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
.+..|+++|.||+||||+|+.|++.|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4568999999999999999999999976443
No 81
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.80 E-value=0.00022 Score=66.63 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.+|+++|.||+||||+|+.|++.|++.++.+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 467899999999999999999999999888776544
No 82
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.79 E-value=4e-05 Score=70.21 Aligned_cols=38 Identities=32% Similarity=0.542 Sum_probs=31.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.+|++.|.||+||||+|+.|++.|+..|+....+..|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 36899999999999999999999986666666665443
No 83
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.79 E-value=0.00013 Score=67.07 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
+|++.|.+|+||||+++.|+++|...|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 689999999999999999999996655433
No 84
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.73 E-value=0.00011 Score=78.05 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=100.2
Q ss_pred CCCeEEEEeCCCCCCccccc-----cccccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcccC
Q psy673 8 VTPQVVAMVGLPAREFSKMA-----FYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASIS 82 (512)
Q Consensus 8 ~~~~~~~~~glpar~~~~~~-----~~~~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~~ 82 (512)
..+.+|+|||+|++|||.++ ++.|...++.+|..+..... + .|- ...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-----------~--~g~--------~~~------- 88 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-----------M--VKT--------YKS------- 88 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-----------H--HCS--------CCC-------
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-----------h--ccC--------CCc-------
Confidence 45789999999999999754 34577888888887721110 0 000 011
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHH
Q psy673 83 SATHDFFRSDNEYALSIRDQIALQALEDLDDWII-KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQAL 161 (512)
Q Consensus 83 ~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l 161 (512)
.++|+..+++....|+.++..++.++..++. .+|.+. ++|++|.. .+.|+.+...+.
T Consensus 89 ---~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~v------------------V~D~tn~~-~~~R~~~~~~~~ 146 (469)
T 1bif_A 89 ---FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVA------------------VFDATNTT-RERRAMIFNFGE 146 (469)
T ss_dssp ---GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEE------------------EEESCCCS-HHHHHHHHHHHH
T ss_pred ---ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE------------------EEeCCCCC-HHHHHHHHHHHH
Confidence 3467888888889999999999999999993 456554 78888875 456666644433
Q ss_pred HHHHHHHHcCCcEEEEcCCChhHH-HHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHHHHHHhcCCCCCCCCh
Q psy673 162 EDLDDWIIKGGQVAFFDATNSTQA-RRNTIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEP 234 (512)
Q Consensus 162 ~~~~~~l~~~g~~~i~Datn~~~~-~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~~~~~~~~~dy~~~~~ 234 (512)
+. +..++.++..+...+ -..++.+.......++ ..+.+++++...+|...+.+-|..++.
T Consensus 147 ~~-------~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~------~~~~e~~~~~~~~R~~~y~~~ye~l~~ 207 (469)
T 1bif_A 147 QN-------GYKTFFVESICVDPEVIAANIVQVKLGSPDYV------NRDSDEATEDFMRRIECYENSYESLDE 207 (469)
T ss_dssp HH-------TCEEEEEEECCCCHHHHHHHHHHHTTTSTTTT------TSCHHHHHHHHHHHHHHHHTTCCCCCT
T ss_pred hc-------CCcEEEEEEECCCHHHHHHHHHHhhhcCCccc------CCCHHHHHHHHHHHHHHhccEeEECCc
Confidence 33 235666763322221 1122233111222333 234445667776766766678887774
No 85
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.72 E-value=0.00011 Score=71.72 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=27.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+|+++|.||+||||+|+.|+..+++ .+++.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~-----~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW-----PVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC-----CEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC-----eEEeccHH
Confidence 6899999999999999999998854 45555543
No 86
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.65 E-value=0.00027 Score=64.50 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=31.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+|+++|.||+||||+++.|++.|+..|.+..+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999755544556655543
No 87
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.64 E-value=0.0004 Score=63.56 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
+|++.|.||+||||+|+.|++.|+..|+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY 29 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 6899999999999999999999864443
No 88
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.64 E-value=7.6e-05 Score=71.91 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc----CCcce
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL----GLNVR 67 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~----~~~~~ 67 (512)
....|++.|.+|+||||+++.|+.+|... |+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 45789999999999999999999999876 65443
No 89
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.61 E-value=0.00033 Score=63.11 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=29.7
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.|+++|.||+||||+|+.|++.|++ .+++.+...+...|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~d~~~~~~~g 42 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY-----EFVDTDIFMQHTSG 42 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----cEEcccHHHHHHhC
Confidence 6899999999999999999999865 34455555544333
No 90
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.57 E-value=3.8e-05 Score=69.11 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=29.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
.|++.|.||+||||+|+.|++.|++ .+++.+...+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~-----~~i~~d~~~~~~~ 39 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI-----PFYDVDEEVQKRE 39 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC-----CEEEHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEECcHHHHHHc
Confidence 6899999999999999999999854 4455555554433
No 91
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.57 E-value=0.00037 Score=67.43 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLN 65 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~ 65 (512)
.+.+|++.|.+|+||||+++.|+++|...|+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35789999999999999999999999988776
No 92
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.46 E-value=0.00083 Score=63.85 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
...|++.|.+|+||||+++.|+.+|...|+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 578999999999999999999999988776554
No 93
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=6.2e-05 Score=68.51 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.6
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
.|+++|.||+||||+|+.|++.|++ ..++.|...+...|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~-----~~~d~d~~~~~~~g 44 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL-----VFLDSDFLIEQKFN 44 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcccHHHHHHcC
Confidence 5889999999999999999999865 34555555544333
No 94
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.43 E-value=0.00086 Score=63.76 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=27.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
...|++.|.+|+||||+++.|+.+|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 468899999999999999999999988776
No 95
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=0.00026 Score=63.83 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.0
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhcc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS 80 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~ 80 (512)
..|++.|.||+||||+|+.|++.|++ .++..+...+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~-----~~id~D~~~~~~~g 47 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL-----EVLDTDMIISERVG 47 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEChHHHHHHhC
Confidence 36889999999999999999999965 44555554444333
No 96
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.33 E-value=0.0012 Score=62.79 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=30.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
..|-+.|.+|+||||+++.|+. + +..++++|..-|.+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ia~~l~ 47 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDLIAHRIT 47 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcHHHHHHh
Confidence 3688999999999999999988 6 456777777666544
No 97
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.31 E-value=0.00072 Score=63.22 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~ 79 (512)
-.+|.++|.+|+||||+|+.|++.+ +..++++|.+-+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~~~~~ 51 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIGHEVL 51 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHHHHHH
Confidence 4689999999999999999999987 456777776654433
No 98
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.20 E-value=0.0019 Score=59.37 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=23.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.|+++|.||+||||+++.|+++|++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999999864
No 99
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.18 E-value=0.0013 Score=71.36 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCC-cceeeccchhhhhhcccCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGL-NVRLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDL 111 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~-~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 111 (512)
.....|+++|++|+||||+++.|+..|+..+. ....++.+..+..+.+ .
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~-~----------------------------- 416 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS-E----------------------------- 416 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS-S-----------------------------
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc-c-----------------------------
Confidence 45678999999999999999999999975432 2333444444432211 0
Q ss_pred HHHHhcCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHH
Q psy673 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIH 191 (512)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~ 191 (512)
+ -|+.. .....++++. .+...+...+.++|........+.|+.+.
T Consensus 417 ---------l-------------------~f~~~--~r~~~~r~i~-----~v~q~l~~~~~ivi~~~~~~~~~~r~~~r 461 (552)
T 3cr8_A 417 ---------L-------------------GFSKA--HRDVNVRRIG-----FVASEITKNRGIAICAPIAPYRQTRRDVR 461 (552)
T ss_dssp ---------C-------------------CCSHH--HHHHHHHHHH-----HHHHHHHHTTCEEEECCCCCCHHHHHHHH
T ss_pred ---------c-------------------CCCHH--HHHHHHHHHH-----HHHHHHHhcCCEEEEecCCccHHHHHHHH
Confidence 0 02110 1111222221 11222333478888877655567777788
Q ss_pred HHHHhhcCceEEEEEEEeCCHHHHHH
Q psy673 192 HKIVEERQYMLFFVESLCDDPDILDR 217 (512)
Q Consensus 192 ~~~~~~~~~~~~~~e~~~~d~~~~~~ 217 (512)
+ +++..| .+++|.+.|+.+.+.+|
T Consensus 462 ~-lL~~~g-~f~~V~L~~~~e~~~~R 485 (552)
T 3cr8_A 462 A-MIEAVG-GFVEIHVATPIETCESR 485 (552)
T ss_dssp H-HHHTTS-EEEEEEECC--------
T ss_pred H-HHHHcC-CEEEEEEcCCHHHHHHh
Confidence 8 777777 78888888988655554
No 100
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.0016 Score=59.19 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHHHHHHHH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILDRNI 219 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~n~ 219 (512)
.|...++|++|.....|+..+. +++......-++-++.+-..+-.+|.
T Consensus 72 ~g~~~~~~~~~~~s~g~~qrv~-iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 72 LGKLTVVDATNVQESARKPLIE-MAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp TTCCEEEESCCCSHHHHHHHHH-HHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHH-HHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 3888999999999988888888 89999888877777777655544544
No 101
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.09 E-value=0.0038 Score=60.30 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc-----CCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL-----GLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-----~~~~~~~~~~~~r 75 (512)
..+.+|.+.|.||+||||+|+.|+..|++. +..+-+++.|.+-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 456789999999999999999999998764 2334455555443
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.09 E-value=0.002 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+++++|.+|+||||+++.|+..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 468899999999999999998744
No 103
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.01 E-value=0.00029 Score=65.78 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=27.5
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCccee
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRL 68 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~ 68 (512)
+|+++|.+|+||||+++.|+++|+..|+.+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68999999999999999999999876655443
No 104
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.0019 Score=63.77 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
+.+.+|+++|.||+||||+|+.|+. ++ ..+++.|...+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg-----~~~id~D~~~~~ 111 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG-----AYIIDSDHLGHR 111 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT-----CEEEEHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC-----CcEEehhHHHHH
Confidence 3468999999999999999999994 43 455666655433
No 105
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.94 E-value=0.0054 Score=58.70 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCccee
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRL 68 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~ 68 (512)
..+..|++.|.+|+||||+++.|+++|+. .|+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 35689999999999999999999999988 7775543
No 106
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.92 E-value=0.0089 Score=55.99 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
.+.+|+++|.+|+||||+++.|+. + +..+++.|..-+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D~~~~~ 40 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIARQ 40 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEccHHHHH
Confidence 467899999999999999999998 5 3455666655443
No 107
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.91 E-value=0.00073 Score=61.50 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+..|+++|.||+||||+++.|++.+++ ..++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~-----~~~~~d~~~ 46 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL-----KYINVGDLA 46 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC-----eEEEHHHHH
Confidence 457889999999999999999999854 444555443
No 108
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.00094 Score=61.98 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=29.0
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~ 78 (512)
.|+++|.+|+||||+++.|+. + +..++..|...+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~~~~~~ 38 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADKLIHSF 38 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHHHHHGG
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccHHHHHH
Confidence 689999999999999999999 6 35666777665443
No 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.88 E-value=0.0069 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+..|+++|.||+||||+++.|+..+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999999864
No 110
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.87 E-value=0.019 Score=53.96 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.7
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..|++-|..|+||||.++.|+.+|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3588899999999999999999995
No 111
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.79 E-value=0.00041 Score=64.78 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=34.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+|.++|.+|+||||+++.|+..+...+..+.++..+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4568999999999999999999999997666655555555443
No 112
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.70 E-value=0.0014 Score=63.94 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...|+++|.+|+||||+++.|++.|+|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 4579999999999999999999999764
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.70 E-value=0.015 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
....+|+++|.||+||||+++.|+..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 345789999999999999999999863
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.68 E-value=0.0064 Score=58.30 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.+.+|+++|.||+||||+++.|++.++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35799999999999999999999988553
No 115
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.65 E-value=0.061 Score=50.03 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcce
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVR 67 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~ 67 (512)
+.|++=|.-|+||||.++.|+++|...|.++.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 46888999999999999999999988776554
No 116
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.47 E-value=0.021 Score=53.45 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=26.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
+.+|.+.|.+|+||||+|+.||+.|++.-+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 568999999999999999999999976433
No 117
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.41 E-value=0.026 Score=56.66 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.|.+|+++|-+|+|||++|..|+..++ ..++++|
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~D 42 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVD 42 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEecc
Confidence 467899999999999999999999874 4555554
No 118
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.28 E-value=0.019 Score=58.28 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+.+|+++|-+|+|||+||..||+.++ ..++++|.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC-----CcEEcccc
Confidence 35899999999999999999999884 45666653
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.20 E-value=0.008 Score=63.30 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.|.+|+++|.+|+||||++.+|+.+|.-.|.++-++.++.+|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 578999999999999999999999998888888888777776
No 120
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.017 Score=58.26 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.+|+++|-+|+||||+|+.|++.+++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999999854
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.99 E-value=0.024 Score=59.48 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=37.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+|+++|.+|+||||++.+|+.+|...|.++-++..+.+|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 478999999999999999999999998888888777777766
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.56 E-value=0.0036 Score=57.33 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH-hhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY-LRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~-l~~ 61 (512)
.+..|+++|.||+||||+++.|++. +++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3568999999999999999999998 544
No 123
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.52 E-value=0.073 Score=50.69 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
.+.+|.+.|.+|+|||++|+.|++.|++.-++.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 367899999999999999999999997644433
No 124
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.49 E-value=0.087 Score=48.23 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+++++|-+|+||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999998764
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.08 E-value=0.073 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...++++|-||+||||+++.|+..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999885
No 126
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.06 E-value=0.13 Score=51.56 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
+.+|+++|-+|+|||++|..|+..++ ..++++|
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecC
Confidence 56889999999999999999999884 4555555
No 127
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.00 E-value=0.012 Score=55.25 Aligned_cols=37 Identities=24% Similarity=0.533 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
+..|.++|.+|+||||+++.|++.+++ ..+..|...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~-----~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW-----HLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-----CcccCcceee
Confidence 468999999999999999999998854 3445555444
No 128
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.97 E-value=0.009 Score=54.99 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+..|++.|.||+||||+++.|++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
No 129
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.95 E-value=0.017 Score=57.19 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
.+.+|.+.|-+|+||||+|+.|+..|+..+..+.+++.|.+-|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 3567999999999999999999999987777777787776553
No 130
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.87 E-value=0.009 Score=55.90 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.+|+++|.+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998774
No 131
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.84 E-value=0.012 Score=56.66 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
..|++|++.|.||+||||+++.|++.|++ ..++.|...|.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~-----~~~d~g~~~r~ 46 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGA-----RYLDTGAMYRI 46 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CcccCCcHHHH
Confidence 45789999999999999999999999864 34455555444
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.71 E-value=0.0071 Score=55.54 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.+.+|+++|.+|+||||+++.|++. + ..+++.+..-
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g-----~~~id~d~~~ 42 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-G-----YPVLDLDALA 42 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-T-----CCEEEHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-C-----CEEEcccHHH
Confidence 35678999999999999999999996 3 3455666543
No 133
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.43 E-value=0.17 Score=46.17 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=31.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
+.+.|..+-.|.||||+|..||.+|.-.|.++-++..|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34566678899999999999999998888777777665
No 134
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.41 E-value=0.018 Score=53.05 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=29.1
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
+|.+.|.+|+||||+|+.|+..|+ ..+++.|...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CceeccchHHHh
Confidence 789999999999999999999885 445566655544
No 135
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.014 Score=54.32 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=25.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+..+.+|+++|.||+||||+++.|++.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567899999999999999999999874
No 136
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.22 E-value=0.044 Score=55.27 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.7
Q ss_pred EEEeccccccccccc---c-----c-CCCCCCCHHHHHHHHHhhhhhhhcC---------CCCcEEEeCcHHHHHHHHhH
Q psy673 299 VYLTRPGESINNVQA---I-----L-GGDSDLTAGGQEYSKCLSDFVSEKN---------LSDLRIWTSSKEAAKQTVAQ 360 (512)
Q Consensus 299 I~LVRHGes~~n~~~---~-----~-~gD~pLTe~G~~qA~~l~~~L~~~~---------~~~~~V~tSpl~RaiqTA~~ 360 (512)
.+|.|||...-.... . + .|...||+.|.+|...+|++|.+.= .....|+||...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 467899986432110 0 0 1235799999999999999987641 12357899999999999998
Q ss_pred ccc
Q psy673 361 CPG 363 (512)
Q Consensus 361 i~~ 363 (512)
+..
T Consensus 87 fl~ 89 (354)
T 1nd6_A 87 NLA 89 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 137
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.16 E-value=0.099 Score=47.62 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.8
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+++++|-+|+||||+++.|+..+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 35788999999999999999998763
No 138
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.03 E-value=0.023 Score=59.59 Aligned_cols=42 Identities=36% Similarity=0.614 Sum_probs=36.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+..|+++|.||+||||++.+|+.++...|.++-++..+.+|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 457899999999999999999999998777778777777666
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.03 E-value=0.076 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.2
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.++|-+|+||||+.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 140
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.00 E-value=0.022 Score=52.67 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=27.8
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR 77 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~ 77 (512)
.+|.++|.+|+||||+++.|+. + +..+++.|...+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHHHHH
Confidence 5789999999999999999998 4 3445566655443
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.94 E-value=0.032 Score=55.79 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+|.++|.+|+||||++.+|+.++...|.++-++..+.+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3467899999999999999999999997666666555555444
No 142
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.91 E-value=0.028 Score=60.28 Aligned_cols=28 Identities=4% Similarity=-0.067 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....|++.|++|+||||||+.|++.|++
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999999987
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.80 E-value=0.46 Score=48.04 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=36.3
Q ss_pred eCCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 16 VGLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 16 ~glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
.|+|- |+..|-... -+...-++++.|-||.|||++|..++......|..+-.|+.
T Consensus 27 ~gi~T-G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 27 TGIPT-GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CSBCC-SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcccC-CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34543 444443322 23445789999999999999999999877554544544544
No 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.74 E-value=0.27 Score=47.51 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-++++|-||+|||++|+.|+..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566789999999999999999999874
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.67 E-value=0.059 Score=50.10 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
....+|.++|-+|+||||+++.|+..+...|.....+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 45689999999999999999999999874333333333
No 146
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.65 E-value=0.013 Score=54.78 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
|..|+++|.||+||||+++.|++.+++ .+++.|..-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~-----~~~~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM-----IYVDTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-----EEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-----ceecCChHH
Confidence 467999999999999999999998854 445555443
No 147
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.55 E-value=0.036 Score=59.35 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=35.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+|+++|.||+||||++.+|+.++...|.++-++..|.+|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3467899999999999999999999998777777777766655
No 148
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.51 E-value=0.043 Score=50.11 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=30.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.++.++|.+|+||||++.+|++.|...|+++.++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4688999999999999999999998777776666543
No 149
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.43 E-value=0.22 Score=49.05 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+++.|..+-+|.||||+|..||..|...|.++-++..+..+
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 3467888888999999999999999998888888777776544
No 150
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=93.26 E-value=0.1 Score=54.15 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=46.7
Q ss_pred EEEEeccccccccccc------------cc-CCCCCCCHHHHHHHHHhhhhhhhc----CC---------CCcEEEeCcH
Q psy673 298 TVYLTRPGESINNVQA------------IL-GGDSDLTAGGQEYSKCLSDFVSEK----NL---------SDLRIWTSSK 351 (512)
Q Consensus 298 ~I~LVRHGes~~n~~~------------~~-~gD~pLTe~G~~qA~~l~~~L~~~----~~---------~~~~V~tSpl 351 (512)
-.+|.|||...-.... .+ .+...||..|.+|...+|++|++. ++ +...|+++..
T Consensus 11 v~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~ 90 (410)
T 1dkq_A 11 VVIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVD 90 (410)
T ss_dssp EEEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSS
T ss_pred EEEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCc
Confidence 3467899976432110 01 124569999999999999988653 11 2456999999
Q ss_pred HHHHHHHhHccc
Q psy673 352 EAAKQTVAQCPG 363 (512)
Q Consensus 352 ~RaiqTA~~i~~ 363 (512)
.||++||+.+..
T Consensus 91 ~RT~~SA~~~l~ 102 (410)
T 1dkq_A 91 ERTRKTGEAFAA 102 (410)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 151
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.26 E-value=0.31 Score=47.58 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=26.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
....-++++|-||+|||++|+.|+..+...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 34457899999999999999999999976543
No 152
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.24 E-value=0.049 Score=57.15 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=37.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~~~~r 75 (512)
.+.+|+++|.+|+||||++.+||.+|... |.++-++.+|.+|
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 46788899999999999999999999887 8888888887766
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.23 E-value=0.024 Score=52.49 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.4
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
....+.+|.++|.||+||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34556789999999999999999999977
No 154
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.46 Score=49.72 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|+++|-||+|||.+|++||..+++
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 45788999999999999999999999854
No 155
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.06 E-value=0.044 Score=55.61 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+|+++|-+|+||||+|..|+..++ ..+++.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 45899999999999999999999985 456666653
No 156
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.03 E-value=0.049 Score=51.74 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
.+..|+++|.+|+||||+++.|+..|++ ..++.|...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~-----~~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGF-----TYLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCC-----EEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC-----ceecCCCeeE
Confidence 4567899999999999999999998854 4455565544
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.98 E-value=0.047 Score=53.90 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=30.7
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
...|..++++|-||+|||++|+.||..++. ..-.++.+...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~l~ 73 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGELE 73 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHHhh
Confidence 345678888999999999999999999843 44444544443
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.97 E-value=0.036 Score=50.90 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+.+|+++|.+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999877
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.95 E-value=0.03 Score=54.09 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
....|.++|.+|+||||+++.|++.|++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 456899999999999999999999986543
No 160
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=92.93 E-value=0.15 Score=51.69 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=47.4
Q ss_pred EEEEecccccccccc--c----ccCCCCCCCHHHHHHHHHhhhhhhhcC------------CCCcEEEeCcHHHHHHHHh
Q psy673 298 TVYLTRPGESINNVQ--A----ILGGDSDLTAGGQEYSKCLSDFVSEKN------------LSDLRIWTSSKEAAKQTVA 359 (512)
Q Consensus 298 ~I~LVRHGes~~n~~--~----~~~gD~pLTe~G~~qA~~l~~~L~~~~------------~~~~~V~tSpl~RaiqTA~ 359 (512)
-+.+.|||...-... . -..|...||+.|.+|...+|+++++.= .....+++++..||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 456789998643210 0 112245799999999999999886431 2346789999999999999
Q ss_pred Hccc
Q psy673 360 QCPG 363 (512)
Q Consensus 360 ~i~~ 363 (512)
.+..
T Consensus 91 ~~l~ 94 (342)
T 3it3_A 91 SLLM 94 (342)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.88 E-value=0.49 Score=47.26 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.+..++++|-||+|||++|+.+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55678899999999999999999998853
No 162
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.87 E-value=0.2 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-++++|-||+|||++|+.|+..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999999874
No 163
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.91 Score=47.40 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|+++|-||+|||++|++||..+++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45677999999999999999999999854
No 164
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.04 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=24.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+..|++.|.+|+||||+++.|+++|+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999984
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.62 E-value=0.084 Score=49.15 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+..++++|-||+|||++|+.++..+...+.....++....
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 356788999999999999999999998766655555555443
No 166
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.59 E-value=0.035 Score=53.64 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+..|++.|.+|+||||+++.|+++|+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3468999999999999999999999984
No 167
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.59 E-value=0.069 Score=53.93 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
..+.++.++|.+|+||||++++|+.++...+...-+...+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 457899999999999999999999999876655544444333
No 168
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.57 E-value=0.14 Score=53.17 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+.+|+++|-+|+|||+||..|+..++ ..++++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 56889999999999999999999985 35666653
No 169
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.46 E-value=0.073 Score=52.72 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=27.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.+.+.+|.++|-+|+||||+|+.|++.++..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999999753
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.45 E-value=0.064 Score=49.24 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
.-++++|-||+|||++|+.|+..+...+.....+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 678899999999999999999998765544443433
No 171
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.42 E-value=0.075 Score=50.79 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.+..++++|.+|+||||++.+|+.++. .|.++-+++.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 467899999999999999999999998 887777776654
No 172
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.41 E-value=0.94 Score=42.37 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=16.3
Q ss_pred CeEEEEecCCCCCCchhhhhHH-HHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLC-RYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~-~~l~ 60 (512)
..+++++|-+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999 8764
No 173
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.24 E-value=0.33 Score=48.41 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-.|+||||+.+.|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4456889999999999999999999875
No 174
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.15 E-value=0.09 Score=52.38 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..+.++.++|.+|+||||++++|+.++...+....+...+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 3567999999999999999999999997655444444333
No 175
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.11 E-value=0.61 Score=44.38 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=25.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....-++.++|-.|+||||+.+.|+..+..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 345568999999999999999999988753
No 176
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.07 E-value=0.085 Score=52.64 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.+-+|.++|.+|+||||++++|+.++...+.+..+...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 467899999999999999999999997655544444333
No 177
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.04 E-value=0.09 Score=52.19 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~~~~~r 75 (512)
..+.+|.++|.+|+||||++.+|+.++.. .|.++-++..+.+|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 34678999999999999999999999974 56666655555443
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.04 E-value=0.12 Score=45.77 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGL 64 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~ 64 (512)
..-.++++|-+|+||||+++.|+..+...|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~ 65 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK 65 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4456788999999999999999998865443
No 179
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.03 E-value=0.11 Score=51.57 Aligned_cols=41 Identities=34% Similarity=0.565 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
+.+|+++|.+|+||||++.+|+.++...|.++-++..+..|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 67888899999999999999999998777766666665544
No 180
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.99 E-value=0.095 Score=53.61 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
..+.+|.++|.+|+||||++++|+.++...+....+...+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 45689999999999999999999999976554444443333
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.94 E-value=0.098 Score=52.56 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.+|.++|.+|+||||++.+|+.++...|.++-++..+..|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4567899999999999999999999998767666655554433
No 182
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.54 Score=49.25 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=26.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...|.-|+++|-||+|||++|++||..+++
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345788999999999999999999999854
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.80 E-value=0.11 Score=55.43 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..+.+|.++|.+|+||||++++|+.++...+....+...+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 4578999999999999999999999997655444433333
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.44 E-value=0.088 Score=46.77 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.+..++++|-||+|||++|+.+++.+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34566889999999999999999998854
No 185
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=91.35 E-value=0.18 Score=52.39 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHhhhhhhhc----CC--------CCcEEEeCcHHHHHHHHhHccc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEK----NL--------SDLRIWTSSKEAAKQTVAQCPG 363 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~----~~--------~~~~V~tSpl~RaiqTA~~i~~ 363 (512)
...||+.|.+|...+|++|.+. ++ ....|++|...||++||+.+..
T Consensus 53 ~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~Rt~~Sa~~fl~ 110 (418)
T 2wnh_A 53 DGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVD 110 (418)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSHHHHHHHHHHHH
T ss_pred cCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCHHHHHHHHHHHH
Confidence 4569999999999999988543 11 2356999999999999998754
No 186
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.27 E-value=0.96 Score=44.03 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44568899999999999999999998753
No 187
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.24 E-value=0.054 Score=47.00 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCH
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~ 212 (512)
..+-+.++|+++........+.+ .....+.++++|=..||..
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAE-YLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHH-HHHHHTCCEEEEEECCCSG
T ss_pred CCEEEEEEECCCcccHhHHHHHH-HHHhcCCCEEEEEECcccc
Confidence 34778899999854444455666 5666789999988888853
No 188
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.23 E-value=0.11 Score=54.29 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=34.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+|.++|.+|+||||++.+|+.++...|.++-++..+.+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 467888889999999999999999998777777766665544
No 189
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.46 Score=50.12 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|+++|-||+|||++|++||..+++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 46788999999999999999999999854
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.97 E-value=0.27 Score=48.93 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-|+++|-||+|||++|+.|+..++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 356799999999999999999999874
No 191
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.92 E-value=1.7 Score=43.46 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
.++++|-||+|||++++.+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78899999999999999999988543
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.37 Score=49.96 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=25.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|.+.|-||+|||.+|++||..+++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 45678999999999999999999999854
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.83 E-value=0.11 Score=47.93 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.+|.++|-+|+||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999999999999999886
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.82 E-value=0.15 Score=51.72 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=34.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+...+|+++|.||+||||++.+|+..+.-.|.++-++..+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSS 119 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 45677899999999999999999999997777777777666444
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.81 E-value=0.33 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-++++|-||+|||++|+.|+..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999999874
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.80 E-value=1.1 Score=46.77 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.--++++|-||+||||+|+.|+.++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999998854
No 197
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.76 E-value=0.45 Score=42.66 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=27.7
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCC
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDD 211 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d 211 (512)
+-+.|+|+++........+.+ .....+.++++|=.-||-
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 108 AVVQIVDLRHAPSNDDVQMYE-FLKYYGIPVIVIATKADK 146 (195)
T ss_dssp EEEEEEETTSCCCHHHHHHHH-HHHHTTCCEEEEEECGGG
T ss_pred EEEEEEECCCCCCHHHHHHHH-HHHHcCCCEEEEEECccc
Confidence 667889999854444444566 566688999888777763
No 198
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.55 E-value=0.15 Score=47.80 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRR 76 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr 76 (512)
..+.+|.++|.||+||+|+|..|...++.. ++.+++.++.-|
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHH
Confidence 467899999999999999999998866431 356666664333
No 199
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.43 E-value=0.15 Score=46.52 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
.+++++|.+|+||||+..+|...+...|.+..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 46789999999999999999999876665554443
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.39 E-value=1.1 Score=45.62 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
...++++.|-||+|||++|..++......|.++-.|.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568899999999999999999987755454444443
No 201
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.37 E-value=0.1 Score=47.34 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=22.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+++++|-+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998764
No 202
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.37 E-value=0.18 Score=50.10 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh--hcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR--WLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~--~~~~~~~~~~~~ 72 (512)
..+.+|.++|-+|+||||+++.|+..+. ..+..+.++..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 4568999999999999999999999886 333345554444
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.20 E-value=2 Score=42.62 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=26.0
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
.....++++.|-||+|||++|.+++......|
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 34567999999999999999999997764433
No 204
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=90.14 E-value=1 Score=47.94 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=34.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
.+.+++|++=|.-|+||++..+.|..+|+--|.++..|..
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~ 79 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR 79 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC
Confidence 5789999999999999999999999999877766555433
No 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.13 E-value=0.21 Score=50.26 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=26.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...|.+|.+.|-+|+||||+++.|+..+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456789999999999999999999998863
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.05 E-value=0.12 Score=45.23 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+.-|++.|-||+|||++|+.|+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34445789999999999999999987643
No 207
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.98 E-value=0.11 Score=46.06 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+..++++|-||+|||++|+.+++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34566799999999999999999998854
No 208
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.98 E-value=0.9 Score=43.57 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34568899999999999999999998753
No 209
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.97 E-value=0.92 Score=44.07 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34568889999999999999999988754
No 210
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=89.93 E-value=0.39 Score=49.66 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=47.4
Q ss_pred EEEEeccccccc-ccc---------c---c-cCCCCCCCHHHHHHHHHhhhhhhhc----C---------CCCcEEEeCc
Q psy673 298 TVYLTRPGESIN-NVQ---------A---I-LGGDSDLTAGGQEYSKCLSDFVSEK----N---------LSDLRIWTSS 350 (512)
Q Consensus 298 ~I~LVRHGes~~-n~~---------~---~-~~gD~pLTe~G~~qA~~l~~~L~~~----~---------~~~~~V~tSp 350 (512)
-++|.|||...- ... . . ..+...||+.|.+|...+|++|++. + .....|++|.
T Consensus 10 V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~ 89 (398)
T 3ntl_A 10 VLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANS 89 (398)
T ss_dssp EEEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECS
T ss_pred EEEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECC
Confidence 456889997543 110 0 0 1236679999999999999888643 1 1346799999
Q ss_pred HHHHHHHHhHccc
Q psy673 351 KEAAKQTVAQCPG 363 (512)
Q Consensus 351 l~RaiqTA~~i~~ 363 (512)
..||++||+.+..
T Consensus 90 ~~Rt~~SA~~fl~ 102 (398)
T 3ntl_A 90 LQRTVATAQFFIT 102 (398)
T ss_dssp SHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 9999999998764
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.83 E-value=0.55 Score=47.47 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-|+++|-||+|||++|+.|+..++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3466789999999999999999999874
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.82 E-value=1.6 Score=45.46 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=33.6
Q ss_pred eCCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeec
Q psy673 16 VGLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFN 70 (512)
Q Consensus 16 ~glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~ 70 (512)
-|+|- |...|-... -.....+++++|-||+|||++|..++..... .|.++-.|+
T Consensus 181 ~~i~t-G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 181 AGVRT-GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp --CCC-SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcccC-CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35553 444433322 2334579999999999999999999987643 233343343
No 213
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.78 E-value=0.16 Score=46.29 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.5
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhc
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
++++|-||+|||++|+.+++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999999999987543
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.75 E-value=0.15 Score=48.75 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-++++|-||+|||++|+.|+..++
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 455689999999999999999999874
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.72 E-value=1.6 Score=40.72 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
...++++.|-||+|||++|.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998754
No 216
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=89.69 E-value=0.3 Score=51.05 Aligned_cols=46 Identities=13% Similarity=-0.049 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHhhhhhhhc-----CCCCcEEEeCcHHHHHHHHhHccc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEK-----NLSDLRIWTSSKEAAKQTVAQCPG 363 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~-----~~~~~~V~tSpl~RaiqTA~~i~~ 363 (512)
...||+.|.+|...+|++|.+. .-+...|+||...||++||+.+..
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~rY~~ll~~~~v~vrST~~~Rti~Sa~~fl~ 151 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKFIE 151 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEESCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCceEEEeCCccHHHHHHHHHHH
Confidence 5569999999999999998764 123357999999999999998743
No 217
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.66 E-value=0.11 Score=47.40 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=26.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.++|-+|+||||+++.|++++.-.|++...+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 678999999999999999999997655444333
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.65 E-value=0.19 Score=49.10 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=28.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..++++|-||+|||++|+.|+..+...+.....++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4789999999999999999999986544444444443
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.65 E-value=0.32 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+|+||||+..+|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3468999999999999999998875
No 220
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.62 E-value=1.2 Score=43.13 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-.|+||||+.+.|+..+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456899999999999999999998875
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.60 E-value=0.57 Score=48.93 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..|.-|.++|-||+|||.+|++||..+++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 45788999999999999999999998854
No 222
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.55 E-value=0.15 Score=48.33 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....|++.|.+|+||||+++.|+.+|+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999999965
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.51 E-value=1.9 Score=42.11 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 34567889999999999999999998753
No 224
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.46 E-value=1.5 Score=47.49 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|++.+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3446789999999999999999999875
No 225
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.39 E-value=0.44 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
+..|+++|.|++||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998753
No 226
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.36 E-value=0.33 Score=50.94 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~ 212 (512)
.+-+.++|++..-...-..+.+ +.++.+.+++++---|+..
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~-~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHH-HHTTCCSCEEEEEECC---
T ss_pred CEEEEEEeCCCCCChHHHHHHH-HHHHcCCCEEEEEECccch
Confidence 3677889998744444456777 6777899999998888854
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.32 E-value=0.26 Score=47.04 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=34.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.++.||+.|-||.||||+|-.++..+...|.++.++.++.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4788999999999999999999999988788777666654
No 228
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.17 E-value=0.37 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999998875
No 229
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.15 E-value=0.4 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCchhhhhHHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.|+++|.|++||||+..+|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999998643
No 230
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.10 E-value=0.19 Score=51.23 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=25.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+....|+++|.||+||||+++.|+..|++
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344567999999999999999999999875
No 231
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.03 E-value=0.23 Score=49.12 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
.+.+|.++|.+|+||||++..|+.++...+.++-++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 45678888999999999999999999876666665555443
No 232
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.85 E-value=2.7 Score=42.90 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 44568899999999999999999988753
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.78 E-value=2.8 Score=43.74 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=29.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh-cCCcceeec
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW-LGLNVRLFN 70 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~-~~~~~~~~~ 70 (512)
+...-++++.|-||+|||+++..++..+.. .|.++-.|+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345679999999999999999999987754 243444443
No 234
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.77 E-value=1.2 Score=45.13 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
...++.+.|-||+||||+|.+++......|..+-.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 457899999999999999999997765444444333
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.72 E-value=0.2 Score=49.89 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh-hcCCcceeecc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR-WLGLNVRLFNL 71 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~-~~~~~~~~~~~ 71 (512)
+.-+++.|-||+|||++|+.|+..+. ..|.++..+++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46788999999999999999999987 66655544444
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.63 E-value=0.56 Score=43.20 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEecCCCCCCchhhhhHHHHh
Q psy673 38 VAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l 59 (512)
||++|-+|+|||||+++|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998654
No 237
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.54 E-value=5.8 Score=38.35 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=34.3
Q ss_pred CCCCCCcccccccc-ccCCCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceee
Q psy673 17 GLPAREFSKMAFYQ-RTVTPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLF 69 (512)
Q Consensus 17 glpar~~~~~~~~~-~~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~ 69 (512)
|+|-.|+.-|.... -....-+++++|-||+||||+++.|+..+... |..+-.|
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 44432443333222 23455689999999999999999999988654 4333333
No 238
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.48 E-value=0.54 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.0
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+++.|-||+|||++|+.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999874
No 239
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.46 E-value=2.4 Score=41.06 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-.|+||||+.+.|+..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4556889999999999999999998875
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.41 E-value=2.4 Score=39.87 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34567889999999999999999987753
No 241
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.35 E-value=0.85 Score=49.38 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-.+.++|-.|+||||+.+.|++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457899999999999999999998854
No 242
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.31 E-value=0.2 Score=48.07 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.+.-|++.|-||+|||++|+.|+..+...+.....+++.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 345678899999999999999999875433334444443
No 243
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.31 E-value=0.17 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...|+++|.+|+||||+.+.|+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4789999999999999999998643
No 244
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.26 E-value=0.21 Score=49.44 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=27.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
..-+++.|-||+|||++|+.|+..+...+.....++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456888999999999999999998854333333333
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.23 E-value=0.2 Score=46.05 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+..++++|-||+|||++++.+++.+.+
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3458899999999999999999998864
No 246
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.14 E-value=1.9 Score=46.67 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|++.+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3446789999999999999999999875
No 247
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.11 E-value=1.2 Score=43.75 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+..+++.|-||+|||++|+.|++.++
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4456788899999999999999999884
No 248
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.10 E-value=2.5 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....-++.++|-.|+||||+.+.|+..+..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345568899999999999999999988754
No 249
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.09 E-value=0.92 Score=40.30 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=26.2
Q ss_pred CcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeC
Q psy673 172 GQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210 (512)
Q Consensus 172 g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~ 210 (512)
+-+.++|++......-..+.+ .....+.++++|=.-||
T Consensus 107 ~vi~v~d~~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 107 MVFLLVDGRIPPQDSDLMMVE-WMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp EEEEEEETTSCCCHHHHHHHH-HHHHTTCCEEEEEECGG
T ss_pred EEEEEecCCCCCCHHHHHHHH-HHHHcCCCEEEEEEChh
Confidence 456678988765444445566 56667899988877776
No 250
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.01 E-value=1.4 Score=40.32 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=26.5
Q ss_pred cEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeC
Q psy673 173 QVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210 (512)
Q Consensus 173 ~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~ 210 (512)
-+.|+|++....+.-..+++ .+...+.++++|=.-||
T Consensus 119 vi~v~d~~~~~~~~~~~~~~-~l~~~~~p~i~v~nK~D 155 (223)
T 4dhe_A 119 MILMMDARRPLTELDRRMIE-WFAPTGKPIHSLLTKCD 155 (223)
T ss_dssp EEEEEETTSCCCHHHHHHHH-HHGGGCCCEEEEEECGG
T ss_pred EEEEEeCCCCCCHHHHHHHH-HHHhcCCCEEEEEeccc
Confidence 67899998754343344666 56678899888877776
No 251
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.92 E-value=1.1 Score=48.67 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-.|+||||+.+.|++.+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3456889999999999999999999885
No 252
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.78 E-value=1 Score=48.64 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-.+.++|-+|+||||+.+.|++.+..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 34568899999999999999999998753
No 253
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.77 E-value=0.27 Score=49.10 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...+.+|.++|-+|+||||+++.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456789999999999999999999998864
No 254
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.69 E-value=2.6 Score=40.44 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34557889999999999999999988753
No 255
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.60 E-value=3.1 Score=42.64 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 34567899999999999999999998853
No 256
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.50 E-value=0.2 Score=47.71 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.-++++|-||+||||+++.|+..++
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 33489999999999999999999874
No 257
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.49 E-value=0.21 Score=48.58 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-++++|-||+|||++|+.|+..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 355678899999999999999999884
No 258
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.48 E-value=0.21 Score=47.09 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+..+++.|-||+||||+|..|+++++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999999984
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.42 E-value=2.1 Score=40.77 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.6
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
-++.++|-+|+||||+.+.|+..+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68899999999999999999998754
No 260
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.40 E-value=0.25 Score=48.67 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-|+++|-||+|||++|+.|+..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4566789999999999999999999874
No 261
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=87.36 E-value=0.59 Score=49.04 Aligned_cols=46 Identities=13% Similarity=-0.083 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHhhhhhhhc-----CCCCcEEEeCcHHHHHHHHhHccc
Q psy673 318 DSDLTAGGQEYSKCLSDFVSEK-----NLSDLRIWTSSKEAAKQTVAQCPG 363 (512)
Q Consensus 318 D~pLTe~G~~qA~~l~~~L~~~-----~~~~~~V~tSpl~RaiqTA~~i~~ 363 (512)
+..||+.|.+|...+|+++.+. .-....+++|...||++||+.+..
T Consensus 102 ~g~LT~~G~~~~~~lG~~~r~rY~~l~~~~~~~~rst~~~Rt~~Sa~~f~~ 152 (444)
T 3k4q_A 102 ADDLTPFGEQELVNSGIKFYQRYESLTRNIVPFIRSSGSSRVIASGKKFIE 152 (444)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEEESHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHhccCCceEEEeCCccHHHHHHHHHHH
Confidence 5679999999999999888654 112347999999999999998754
No 262
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.22 E-value=0.26 Score=47.54 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.0
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+.-++++|-||+|||++|+.|+..++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567899999999999999999999863
No 263
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.21 E-value=0.3 Score=46.47 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=25.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...+.+|.++|-+|+||||+++.|+..++.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 345678999999999999999999998854
No 264
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.03 E-value=0.63 Score=46.05 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEecCCCCCCchhhhhHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.|+++|.|++|||||..+|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999874
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.93 E-value=0.37 Score=44.51 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
...+++++|-||+||||+++.|+..+...+.++-.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 346788899999999999999997765444444333
No 266
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=86.75 E-value=1.7 Score=46.23 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=34.6
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.+.+++|++=|.-|+||++..+.|..+|+--|+++..|...
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~P 337 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAP 337 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSC
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCC
Confidence 57899999999999999999999999998777666555443
No 267
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.68 E-value=4.8 Score=38.48 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-++.++|-.|+||||+.+.|+..+...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344578999999999999999999887543
No 268
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=86.47 E-value=0.99 Score=44.88 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=32.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+.+++|++=|.-|+|||+..+.|..+|+--|+++..+
T Consensus 83 ~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 83 TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 46799999999999999999999999998766654433
No 269
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.39 E-value=3.2 Score=39.91 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....-++.++|-.|+||||+.+.|+..+..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345568899999999999999999988753
No 270
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.39 E-value=7.3 Score=37.07 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
...-++.++|-.|+||||+.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568899999999999999999986
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.34 E-value=0.46 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
...|.++|.||+||||+..+|+..+...+.+..++..+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 5789999999999999999999988766666666655433
No 272
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=86.32 E-value=0.74 Score=47.89 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDP 212 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~ 212 (512)
.+-+.++|+++........+.+ +.++.+.+++++=--||..
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~-~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHH-HHTTCCSCEEEEEECCCC-
T ss_pred CEEEEEEeCCCCCCHHHHHHHH-HHHHcCCCEEEEEECccCc
Confidence 3667789998754444456777 6777899999998888864
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.30 E-value=0.25 Score=45.59 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...++++|-+|+||||+.+.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34688999999999999999998774
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.18 E-value=1.9 Score=40.94 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34568899999999999999999988753
No 275
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.03 E-value=0.45 Score=51.78 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|++.+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3456899999999999999999999875
No 276
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=85.95 E-value=1.4 Score=43.41 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCh-hHHHHHHHHHHHHhhcCceEEEEEEEeC
Q psy673 171 GGQVAFFDATNS-TQARRNTIHHKIVEERQYMLFFVESLCD 210 (512)
Q Consensus 171 ~g~~~i~Datn~-~~~~R~~~~~~~~~~~~~~~~~~e~~~~ 210 (512)
.+-+.|+|+++. +.+....+++ .+...+.++++|=--||
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~-~l~~~~~pvilV~NK~D 133 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQN-FIKPLNKPVIVVINKID 133 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHH-HTGGGCCCEEEEEECGG
T ss_pred CEEEEEEeCCCCCCchhHHHHHH-HHHhcCCCEEEEEECcc
Confidence 467788999974 4445454466 57778888888766665
No 277
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.95 E-value=0.27 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.9
Q ss_pred EEEEecCCCCCCchhhhhHHHHhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
-+.++|-||+||||+++.|+..++
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 389999999999999999999774
No 278
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.87 E-value=0.15 Score=44.46 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-|++.|-||+|||++|+.|+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 344578899999999999999998763
No 279
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.86 E-value=1.4 Score=46.59 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.|.-|+++|-||+|||++|+.|+..++
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345589999999999999999998773
No 280
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.75 E-value=0.18 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.-++++|-||+|||++|+.|+..++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344789999999999999999998743
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.72 E-value=0.28 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-|+++|-||+|||++|+.|++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345678899999999999999999984
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.70 E-value=0.28 Score=47.49 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.-++++|-||+||||+++.|+..++
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC
Confidence 33489999999999999999999874
No 283
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.56 E-value=0.27 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.-|+++|.||+|||++|+.||..+++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456899999999999999999999854
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.47 E-value=0.34 Score=42.43 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||+|..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999998864
No 285
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.36 E-value=0.52 Score=47.43 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=33.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.....|.++|-||+||||+...|+..+...+.+..++..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 45678889999999999999999999887777766665544
No 286
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.34 E-value=3.7 Score=41.73 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 34567899999999999999999998853
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.27 E-value=3.6 Score=42.96 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeecc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNL 71 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~ 71 (512)
....++++.|-||.|||++|.+++......|.++-.|+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 456799999999999999999999877544544544544
No 288
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.15 E-value=0.38 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+.-|+++|-||+|||++|+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34678899999999999999999987
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.13 E-value=0.66 Score=52.28 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.|.-|++.|-||+|||++|+.||..++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999998843
No 290
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.10 E-value=0.31 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.-++++|-||+|||++|+.|++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999884
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=85.09 E-value=0.32 Score=44.82 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcC
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLG 63 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~ 63 (512)
++.++|.+|+||||+.+.|+..+..-|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 578999999999999999999886334
No 292
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.08 E-value=0.48 Score=47.50 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=36.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+.++|+.|-.|.||||+|..||..|...|.++-++..|..
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 457788999999999999999999999988888888877753
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.02 E-value=0.37 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..+|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 294
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.00 E-value=1.8 Score=41.88 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
....-++.++|-.|+||||+.+.|+..+..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 345568899999999999999999988753
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.92 E-value=0.36 Score=45.02 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+|+++|-+|+|||||++.|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998764
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.90 E-value=1.5 Score=41.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..-++.++|-.|+||||+.+.|+..+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3446788999999999999999988753
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.89 E-value=0.48 Score=43.70 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....|+++|.+|+||||++.+|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999998763
No 298
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.86 E-value=0.34 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
-.++++|-||+||||+++.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5688999999999999999999884
No 299
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.70 E-value=0.46 Score=44.00 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.....|+++|.+|+||||+..+|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345788899999999999999999875
No 300
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.69 E-value=0.35 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.-|+++|-||+|||++|+.|+..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34578889999999999999999884
No 301
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.50 E-value=0.33 Score=48.68 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..++++|-||+|||++|+.++..++
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999985
No 302
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.41 E-value=0.34 Score=48.11 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.-|+++|-||+|||++|+.|+..+++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998754
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.35 E-value=0.39 Score=41.41 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999888874
No 304
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.33 E-value=0.39 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998874
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.28 E-value=0.35 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+++.|-||+|||++|+.|+..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999875
No 306
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.26 E-value=0.5 Score=41.13 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999998864
No 307
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.08 E-value=0.4 Score=42.63 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
...|+++|.|++|||||..+|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999863
No 308
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.06 E-value=2.9 Score=44.08 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=28.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeec
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFN 70 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~ 70 (512)
....++++.|-||+|||++|.+++.....- |.++-.|+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 345689999999999999999999876432 44444443
No 309
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.02 E-value=6.2 Score=40.20 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3456788999999999999999998875
No 310
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.02 E-value=0.52 Score=47.32 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.+..+++.|.||+|||++|+.+++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44668999999999999999999998743
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.95 E-value=0.4 Score=41.20 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+|+|||++..+|..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999988874
No 312
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=83.94 E-value=0.69 Score=46.72 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=37.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
...+.++|..|-.|.||||+|..||..+...|.++-++..|.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356789999999999999999999999988888888888776
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.93 E-value=2.9 Score=40.49 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.-++.++|-.|+||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6688999999999999999999876
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.93 E-value=0.57 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.135 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...|+++|-+|+|||++|..|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999876
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=83.89 E-value=0.48 Score=40.83 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999988874
No 316
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=83.85 E-value=0.78 Score=45.74 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=35.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+.++|..|-.|.||||+|..||..+...|.++-++..|.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 789999999999999999999999988888888887775
No 317
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.83 E-value=0.4 Score=42.15 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+|+|||||.++|+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999975
No 318
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.78 E-value=0.36 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCCchhhhhHHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
..|+++|.+|+|||||.++|+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998863
No 319
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.65 E-value=0.46 Score=47.02 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..+.-|++.|-||+|||++|+.|+......+.....+|++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 3455678899999999999999999775433344444443
No 320
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.64 E-value=6 Score=40.17 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 44568899999999999999999998753
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.60 E-value=0.5 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+|+|||++..+|..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999998875
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=83.49 E-value=0.44 Score=41.18 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999988875
No 323
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.24 E-value=0.45 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+.-+++.|-||+|||++|+.|+..++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 456889999999999999999999853
No 324
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=83.16 E-value=0.46 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 325
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.15 E-value=0.79 Score=46.13 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=32.5
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
.....++.++|-||+||||+.+.|+..+...+.+..++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 35567899999999999999999999987666555555443
No 326
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=83.11 E-value=0.49 Score=41.17 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEecCCCCCCchhhhhHHH
Q psy673 36 QVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..|+++|.+++|||++..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999998863
No 327
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.07 E-value=1.6 Score=42.72 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-.|+||||+.+.|+..+..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34567899999999999999999988753
No 328
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.99 E-value=0.51 Score=41.43 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 329
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.97 E-value=4.9 Score=40.71 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34568889999999999999999988753
No 330
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.96 E-value=0.48 Score=41.01 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999988864
No 331
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.95 E-value=0.43 Score=42.51 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.1
Q ss_pred ccCCCeEEEEecCCCCCCchhhhhHHH
Q psy673 31 RTVTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 31 ~~~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....+..|+++|.+++|||++..+|..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 344568999999999999999999874
No 332
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.95 E-value=0.48 Score=41.08 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999998874
No 333
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=82.85 E-value=0.49 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998874
No 334
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.84 E-value=0.46 Score=42.31 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+|+||||+..+|+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 335
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.62 E-value=3 Score=42.26 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34568889999999999999999988753
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.52 E-value=0.5 Score=43.59 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-++.++|-+|+||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456889999999999999999999874
No 337
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.51 E-value=0.32 Score=48.24 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.7
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.-++++|-||+|||++|+.|+..++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35788999999999999999998743
No 338
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.43 E-value=0.61 Score=46.46 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=25.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
....-++.++|-+|+||||+++.|++.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3456789999999999999999999988
No 339
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=82.31 E-value=0.69 Score=44.46 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred eEEEEecCCCCCCchhhhhHHHHh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+|.++|.+|+||||+|+.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998865
No 340
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.26 E-value=0.77 Score=42.83 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
...+++++|-||+|||+++.+++..+-..+.++-.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456889999999999999999987664334344333
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.26 E-value=0.53 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.8
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+++.|-||+|||++|+.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999885
No 342
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=82.17 E-value=0.73 Score=42.04 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=25.3
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
.+++++|-||+||||++.+++..+...|.++-++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4788999999999999987776654445444443
No 343
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.13 E-value=6.1 Score=40.05 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 44568889999999999999999988753
No 344
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.07 E-value=0.5 Score=46.39 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+..++++|-||+|||++|+.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678899999999999999999874
No 345
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.06 E-value=3.2 Score=49.29 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.+||-.|+||||+.+.|.+.+.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456889999999999999999999875
No 346
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.97 E-value=2.6 Score=50.22 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCC
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRS 91 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~ 91 (512)
..-.|.+||-.|+||||+++.|.|++.- -|.+.+-++....|+..+- -+..+.+|+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~-V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI-VSQEPTLFDC 1167 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE-ECSSCCCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE-ECCCCEeeCc
Confidence 3457889999999999999999998853 3455555666677876654 2333455653
No 347
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.95 E-value=0.67 Score=49.35 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
+..++++|-||+|||++|+.|++.+++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 468899999999999999999999853
No 348
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=81.95 E-value=0.54 Score=40.83 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999988874
No 349
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.93 E-value=0.6 Score=46.56 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+..++++|.||+|||++++.++..+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44668899999999999999999998754
No 350
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=81.93 E-value=0.61 Score=40.93 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999998864
No 351
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=81.81 E-value=1.1 Score=46.69 Aligned_cols=42 Identities=5% Similarity=0.086 Sum_probs=29.4
Q ss_pred CCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeCCHH
Q psy673 171 GGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPD 213 (512)
Q Consensus 171 ~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~d~~ 213 (512)
.+-+.|+|+++.....-..+.+ ..++.+.+++++=--||...
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~-~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLAD-FLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHH-HHHHHTCCEEEEEESCCSHH
T ss_pred CEEEEEEECCCCCCHHHHHHHH-HHHHcCCCEEEEEeCCCCcc
Confidence 3667889998743333345666 56667899999988898753
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=81.74 E-value=0.56 Score=41.55 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999874
No 353
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=81.73 E-value=0.69 Score=41.21 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
....|+++|.+++|||++..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999998753
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=81.71 E-value=0.56 Score=41.59 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|..+|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998874
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.67 E-value=0.65 Score=42.57 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.....|+++|.+|+|||++..+|+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998764
No 356
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.64 E-value=1.8 Score=51.48 Aligned_cols=124 Identities=27% Similarity=0.317 Sum_probs=67.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhh-------cCCcceeeccchhhhhhcccCCCCCCCCCCChHHHHH------HH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRW-------LGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYALS------IR 100 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~-------~~~~~~~~~~~~~rr~~~~~~~~~~~~f~~~~~~~~~------~r 100 (512)
....+.+||-.|+||||+++.|.+++.- -|.+.+-++....|+..+- .+..+-+|+..=.+... -.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~-v~Q~~~Lf~~TI~eNI~~g~~~~~~ 521 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV-VSQEPALFNCTIEENISLGKEGITR 521 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE-ECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccc-cCCcceeeCCchhHHHhhhcccchH
Confidence 4458899999999999999999998853 2334444555566655443 22333445431111110 01
Q ss_pred HHHHHHHHH--HHHHHHh--cCCCCCCCcccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy673 101 DQIALQALE--DLDDWII--KGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAF 176 (512)
Q Consensus 101 ~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i 176 (512)
++ ...|.+ .+.+|+. ++|.--.+|. =...=+-+.++|-.+|+..+.+ -.+.|
T Consensus 522 ~~-v~~a~~~a~l~~~i~~lp~G~~T~vGe---------------~G~~LSGGQkQRiaiARAl~~~--------~~Ili 577 (1321)
T 4f4c_A 522 EE-MVAACKMANAEKFIKTLPNGYNTLVGD---------------RGTQLSGGQKQRIAIARALVRN--------PKILL 577 (1321)
T ss_dssp HH-HHHHHHHTTCHHHHHHSTTTTSSEESS---------------SSCCCCHHHHHHHHHHHHHTTC--------CSEEE
T ss_pred HH-HHHHHHHccchhHHHcCCCCCccEecC---------------CCCCCCHHHHHHHHHHHHHccC--------CCEEE
Confidence 11 122222 2456663 2222111110 0011234678888888777776 89999
Q ss_pred EcCCCh
Q psy673 177 FDATNS 182 (512)
Q Consensus 177 ~Datn~ 182 (512)
+|...+
T Consensus 578 LDE~tS 583 (1321)
T 4f4c_A 578 LDEATS 583 (1321)
T ss_dssp EESTTT
T ss_pred Eecccc
Confidence 997543
No 357
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.62 E-value=0.47 Score=44.44 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
..-+++++|-+|+||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578899999999999999999977
No 358
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=81.61 E-value=0.51 Score=40.90 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.0
Q ss_pred eEEEEecCCCCCCchhhhhHH
Q psy673 36 QVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~ 56 (512)
..|+++|.+++|||++.++|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 578999999999999998885
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.59 E-value=0.56 Score=44.11 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.....|.+.|..|+||||+++.|+.+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34679999999999999999999987
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=81.52 E-value=0.58 Score=41.75 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998875
No 361
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.52 E-value=0.47 Score=47.55 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=26.3
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.+..+++.|-||+|||++++.+++.|.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999985
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.50 E-value=0.61 Score=40.93 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999988875
No 363
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.49 E-value=0.54 Score=45.94 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
+..|++.|-||+|||++|..|+..+...
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 5689999999999999999999986443
No 364
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.45 E-value=0.67 Score=42.51 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....+++++|-||+||||++..|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999998
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.43 E-value=1.4 Score=41.52 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCCChhHHHHHHHHHHHHhhcCce
Q psy673 146 NEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYM 201 (512)
Q Consensus 146 n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~ 201 (512)
|.++.+.|-+.-......+.+|+++.|.+..+||+.+..+=-+.|.+ ..++.|++
T Consensus 163 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~-~l~k~G~k 217 (217)
T 3umf_A 163 NEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNH-ELQKFGVK 217 (217)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHH-HHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH-HHHHcCCC
Confidence 45555555555445556688999777999999999887776677777 67777764
No 366
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.38 E-value=0.59 Score=40.98 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 367
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=81.35 E-value=0.63 Score=42.19 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
...|+++|.+|+||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=81.33 E-value=0.57 Score=42.27 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+++.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998875
No 369
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.30 E-value=0.73 Score=41.62 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
.....|+++|.+++|||++..+|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999885
No 370
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.28 E-value=0.6 Score=41.05 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999988864
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=81.23 E-value=0.62 Score=40.23 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCchhhhhHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.|+++|.+++|||++..++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 372
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=81.15 E-value=0.63 Score=40.79 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
....|+++|.+++|||++..+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999988753
No 373
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.14 E-value=0.66 Score=40.16 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999999864
No 374
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.04 E-value=0.74 Score=47.25 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=24.9
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+..++++|-||+||||+++.|+..++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567899999999999999999998763
No 375
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.00 E-value=0.6 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.7
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
++++|-||+||||+|+.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78899999999999999999985
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=80.90 E-value=0.69 Score=40.45 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999998875
No 377
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=80.88 E-value=0.67 Score=42.35 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=21.1
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHH
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...+..|+++|.+++|||++..++..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 35678999999999999999988874
No 378
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=80.87 E-value=0.97 Score=41.86 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=30.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.+.|..+-.|.||||+|..||.+|...| ++-++..+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 4566778899999999999999998878 777666654
No 379
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=80.86 E-value=0.58 Score=40.96 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999998873
No 380
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=80.84 E-value=0.68 Score=41.34 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
...-++.++|-.|+||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445689999999999999999999988
No 381
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=80.80 E-value=0.96 Score=42.12 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+.|..+-.|.||||+|..||.+|...|.++-++..+..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 4566777889999999999999999887887777766643
No 382
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.77 E-value=0.55 Score=47.91 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.+.-|+++|-||+|||++|+.|+..++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 356889999999999999999999874
No 383
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.63 E-value=0.64 Score=42.90 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
..-++.++|-+|+||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999855
No 384
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=80.63 E-value=3.2 Score=42.87 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~ 66 (512)
.+..-.+.++|-+|+|||+|++.|+++.+..+-++
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe
Confidence 34456888999999999999999999997654444
No 385
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=80.63 E-value=0.64 Score=41.66 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 457899999999999999998875
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.58 E-value=0.72 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999873
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.57 E-value=0.67 Score=42.01 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.|+.|||+|..+++.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998874
No 388
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=80.56 E-value=0.64 Score=40.88 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999988874
No 389
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.40 E-value=0.96 Score=44.32 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+++.|. |-.|.||||+|..||..|...|.++-++..|.
T Consensus 42 ~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 455555 99999999999999999988888888777764
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=80.39 E-value=0.52 Score=41.55 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999998875
No 391
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.33 E-value=0.73 Score=41.40 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||+|..++..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999988775
No 392
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.28 E-value=0.8 Score=41.02 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 457899999999999999998875
No 393
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.25 E-value=0.82 Score=43.73 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=34.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
..+++.|..+-.|.||||+|..||..|. .|.++-++..|..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4567778889999999999999999998 8888777777643
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.18 E-value=0.71 Score=41.47 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||+|..++..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 3457899999999999999988875
No 395
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.17 E-value=1.1 Score=45.18 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=34.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..+.++|..|-.|.||||+|..||.++...|.++-++..|
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3467788999999999999999999998888877777776
No 396
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.07 E-value=0.65 Score=43.44 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=30.5
Q ss_pred EEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
|.+.|-.|.||||+|..||.+|...|.++-++..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344899999999999999999988888777777765
No 397
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=79.99 E-value=0.67 Score=40.85 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 47899999999999999988874
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.99 E-value=0.78 Score=41.34 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||+|..+|..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3468899999999999999998875
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=79.99 E-value=0.67 Score=41.41 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||++..+|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999988864
No 400
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=79.95 E-value=0.59 Score=42.49 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
....|+++|.+++|||+|..+|+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999998885
No 401
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.92 E-value=0.78 Score=44.44 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.8
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
....-.++++|-+|+||||+.+.|+.++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4456789999999999999999999998653
No 402
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=79.89 E-value=1 Score=42.56 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=33.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
+++.|..+-.|.||||+|..||.+|...|.++-++..+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 466777888999999999999999998888887777764
No 403
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=79.76 E-value=0.72 Score=40.68 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999988864
No 404
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.71 E-value=0.54 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.-|+++|-||+|||++|+.|+..++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4678899999999999999999874
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=79.66 E-value=0.69 Score=40.93 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999998864
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=79.66 E-value=0.82 Score=40.21 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988764
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=79.64 E-value=0.66 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCCchhhhhHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
+..|+++|.+++|||++..+|.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 408
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.56 E-value=0.58 Score=42.58 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.....|+++|.+|+||||+.+.|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998753
No 409
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=79.49 E-value=0.75 Score=40.83 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999988874
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=79.41 E-value=0.74 Score=41.24 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||+|..+|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999998874
No 411
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.36 E-value=0.68 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.9
Q ss_pred eEEEEecCCCCCCchhhhhHHHHhh
Q psy673 36 QVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 36 ~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
.-++++|-||+|||++|+.|++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999884
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=79.30 E-value=0.75 Score=40.96 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||++..+|..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998864
No 413
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.18 E-value=0.76 Score=42.71 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
++.+++.|.||+|||++|..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 56889999999999999987653
No 414
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=79.15 E-value=0.75 Score=40.26 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999988863
No 415
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.11 E-value=0.79 Score=47.88 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+.-|+++|-||+|||++|+.|+..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999987
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=79.11 E-value=0.82 Score=40.40 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998874
No 417
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=79.05 E-value=0.77 Score=41.21 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 357899999999999999998875
No 418
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=79.04 E-value=0.75 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..++.|+++|.|++||||+..+|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 4568999999999999999988864
No 419
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.98 E-value=6.3 Score=46.76 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..-.+.+||..|+||||+++.|++.+.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 345789999999999999999999874
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=78.93 E-value=0.75 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=10.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|..+|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998863
No 421
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=78.89 E-value=0.78 Score=40.99 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999988864
No 422
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.87 E-value=1.2 Score=42.49 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+.+.|..|-.|.||||+|..||.+|...|.++-++..+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467777888999999999999999998888777777666443
No 423
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.87 E-value=0.65 Score=40.99 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
..+..|+++|.+++|||++..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999998876
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=78.84 E-value=0.79 Score=40.92 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 357899999999999999998874
No 425
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.80 E-value=1 Score=47.41 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-++++|-||+|||++|+.|+..+.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999874
No 426
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=78.77 E-value=6.4 Score=39.70 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...-++.++|-+|+||||+.+.|+..+..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 44568899999999999999999988753
No 427
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.72 E-value=0.65 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
....|+++|.+++|||++..+|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999998753
No 428
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.71 E-value=0.76 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
...-++.++|-+|+||||+++.|+..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999953
No 429
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=78.67 E-value=0.88 Score=40.45 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|.+.|..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999866654
No 430
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.66 E-value=1.3 Score=42.00 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccc
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLG 72 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~ 72 (512)
..+++..|-||+||||++.+++..+...|.++-+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 46889999999999999999998777667777777443
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=78.54 E-value=0.78 Score=41.59 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 457899999999999999998875
No 432
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.52 E-value=0.8 Score=45.72 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
..+..+++.|-||+|||++|+.+++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557899999999999999999998864
No 433
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.45 E-value=1.3 Score=41.37 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=34.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc-CCcceeeccchh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL-GLNVRLFNLGDY 74 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~-~~~~~~~~~~~~ 74 (512)
.+++.|..+-.|.||||+|..||.+|... |.++-++..+..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 35677778889999999999999999887 888888877755
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=78.39 E-value=0.94 Score=40.96 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||++..+|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3468999999999999999998864
No 435
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.33 E-value=1.1 Score=50.13 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.4
Q ss_pred EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.++++|-||+|||++|+.|+..+.-.+.....++.+.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 689999999999999999999985444455555655554
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=78.26 E-value=0.92 Score=40.50 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999999874
No 437
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.24 E-value=0.86 Score=48.99 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
...++++|-||+|||++|+.|+..++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457899999999999999999999853
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.20 E-value=8.1 Score=41.98 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.-++.++|..|+||||+.+.|+..+..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 457899999999999999999987753
No 439
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.16 E-value=0.8 Score=41.77 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3467899999999999999988875
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=78.09 E-value=0.86 Score=41.86 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999875
No 441
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=78.08 E-value=0.66 Score=42.20 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||++..+|+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998863
No 442
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=78.02 E-value=0.79 Score=40.64 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEecCCCCCCchhhhhHHH
Q psy673 37 VVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 37 ~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.|+++|.+++|||++..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998874
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=77.95 E-value=0.91 Score=41.00 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999998865
No 444
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=77.93 E-value=0.91 Score=41.00 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988864
No 445
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=77.87 E-value=1.3 Score=42.06 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+.+.|..+-.|.||||+|..||.+|.-.|.++-++..+..
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4566778899999999999999999877877777766543
No 446
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.77 E-value=0.94 Score=45.00 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYL 59 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l 59 (512)
.+. ++++|-||+||||+++.|++.+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345 8899999999999999999966
No 447
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.76 E-value=1.5 Score=42.51 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+++.|..+.+|.||||+|..||..|...|.++-++..|..+
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 355666667899999999999999998888888777776543
No 448
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=77.71 E-value=0.85 Score=41.00 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhc
Confidence 357899999999999999998874
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.70 E-value=3.8 Score=42.25 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=31.4
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
...+.+|+++|+||+||||+|++|++.++|..++.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 34678999999999999999999999997766555433
No 450
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.70 E-value=0.97 Score=40.49 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhc
Confidence 457899999999999999998875
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=77.64 E-value=0.9 Score=40.71 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 56899999999999999988874
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=77.64 E-value=0.9 Score=40.91 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999888864
No 453
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=77.58 E-value=0.86 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
....++.++|-||+||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999999974
No 454
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=77.54 E-value=0.98 Score=40.69 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||++..+|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4467899999999999999998874
No 455
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=77.52 E-value=1.3 Score=44.77 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh--hcCCcceeeccch
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR--WLGLNVRLFNLGD 73 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~--~~~~~~~~~~~~~ 73 (512)
..+.++|..|-.|.||||+|-.||..|. ..|.++-++..+.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4578899999999999999999999998 8888888888876
No 456
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=77.42 E-value=0.84 Score=41.11 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
+..|+++|.+++|||+|..+|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 457
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.42 E-value=0.99 Score=42.48 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.2
Q ss_pred cCCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 32 TVTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 32 ~~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+....+++++|-+|+|||||.+.|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556899999999999999999998775
No 458
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=77.40 E-value=0.78 Score=41.08 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++|||+|..+|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999988864
No 459
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.26 E-value=0.77 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.476 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...+.++|-+|+||||+++.|+..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999999885
No 460
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.19 E-value=12 Score=34.50 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHH-HcCCcEEEEcCCChhHH----HHHHHHHHHHhhcCceEEEEEEEeCCHHHHH
Q psy673 153 RDQIALQALEDLDDWI-IKGGQVAFFDATNSTQA----RRNTIHHKIVEERQYMLFFVESLCDDPDILD 216 (512)
Q Consensus 153 r~~~a~~~l~~~~~~l-~~~g~~~i~Datn~~~~----~R~~~~~~~~~~~~~~~~~~e~~~~d~~~~~ 216 (512)
-+..+..+++.+...+ ...-+++|+|--|.... ..+.+++.+..+..-.-++|=.....+++++
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 4456677888888888 44578999999876422 2244666444444444445544555554443
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=77.19 E-value=0.97 Score=41.12 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|..+|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 46899999999999999998864
No 462
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=77.16 E-value=2.6 Score=41.44 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeec
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN 70 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~ 70 (512)
.+++|++-|.-|+||....+.|..+|+--|+++..|.
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~ 110 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK 110 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC
Confidence 7999999999999999999999999987766555443
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.12 E-value=1.1 Score=40.70 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||++..+|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998874
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=77.07 E-value=4.4 Score=43.40 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.-++.++|..|+||||+.+.|+..+..
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 457889999999999999999988754
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.06 E-value=0.99 Score=41.34 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||++..+|..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999998875
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=77.01 E-value=0.98 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.7
Q ss_pred CeEEEEecCCCCCCchhhhhHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
...|+++|.|+.|||+|..+++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999998876
No 467
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.97 E-value=0.96 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEecCCCCCCchhhhhHHHHhh
Q psy673 38 VAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
++++|-||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 468
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=76.96 E-value=1.1 Score=41.36 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||+|..+|..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3468999999999999999998875
No 469
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=76.81 E-value=3.9 Score=41.98 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...-.+.++|-+|+||||+.+.|+..+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4456889999999999999999998775
No 470
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.70 E-value=0.9 Score=48.38 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+.-++++|-||+|||++|+.|+..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44599999999999999999998874
No 471
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=76.54 E-value=1.1 Score=41.76 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..+|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999998864
No 472
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=76.53 E-value=0.96 Score=41.02 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999988875
No 473
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=76.41 E-value=0.92 Score=41.74 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.+..|+++|.+++|||++..+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 357899999999999999999874
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=76.22 E-value=0.82 Score=40.88 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~ 58 (512)
.....|+++|.+++|||++..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999888753
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=76.12 E-value=1.1 Score=41.04 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..+|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 357899999999999999988874
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=76.12 E-value=0.96 Score=41.06 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
.....|+++|.+++|||+|..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4467899999999999999998863
No 477
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=76.11 E-value=1.1 Score=40.62 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.+++|||+|..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988864
No 478
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=76.03 E-value=1.4 Score=42.59 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=31.5
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~ 74 (512)
+++.| .|-.|.||||+|..||.+|...|.++-++..|..
T Consensus 3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34445 6899999999999999999888887777777643
No 479
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.00 E-value=1.2 Score=45.57 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
...-.+.++|-+|+||||+.+.|+++++..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 345689999999999999999999998754
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=75.95 E-value=1.1 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCCchhhhhHHH
Q psy673 35 PQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
...|+++|.|++|||||..+|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999975
No 481
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=75.93 E-value=7.3 Score=39.78 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
....|+++|-++.|||||..+|...+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~ 36 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhh
Confidence 447899999999999999999987643
No 482
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=75.92 E-value=1.6 Score=40.16 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=27.9
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhhhcCCcceee
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF 69 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~ 69 (512)
+.+.|..+-+|.||||+|..|+..|...|.++-++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34555566799999999999999998888776654
No 483
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.88 E-value=1.1 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 35 PQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 35 ~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
+. ++++|-||+|||++|+.+++.+.
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHhc
Confidence 44 89999999999999999999874
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.84 E-value=0.83 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=19.0
Q ss_pred EEEecCCCCCCchhhhhHHHH
Q psy673 38 VAMVGLPARGKSYMATKLCRY 58 (512)
Q Consensus 38 i~~vGlp~rGKS~~a~~l~~~ 58 (512)
+++.|-+|||||++|.+|+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999999864
No 485
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=75.81 E-value=1.7 Score=42.19 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCCeEEEEe--cCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 33 VTPQVVAMV--GLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 33 ~~~~~i~~v--Glp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
..+.++|.. +-.|.||||+|..||..|...|.++-++..|...
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 345666666 7999999999999999998888887777776543
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=75.79 E-value=19 Score=39.16 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEeCCCCCCcccccc-ccccCCCe----------EEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhhhhhccc
Q psy673 13 VAMVGLPAREFSKMAF-YQRTVTPQ----------VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASI 81 (512)
Q Consensus 13 ~~~~glpar~~~~~~~-~~~~~~~~----------~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~rr~~~~~ 81 (512)
|-.+.||-.=...+.+ |...+..+ ++.++|-.|+||||+.+.|+..+............-...
T Consensus 70 i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~------ 143 (608)
T 3j16_B 70 IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI------ 143 (608)
T ss_dssp EEEEEESSSSSTTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHH------
T ss_pred eEEecCChhhcCCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhh------
Q ss_pred CCCCCCCCCCChHHHH------------------------------HHHHHHHH------HHHHHHHHHHhcCCCCCCCc
Q psy673 82 SSATHDFFRSDNEYAL------------------------------SIRDQIAL------QALEDLDDWIIKGGHFPQLG 125 (512)
Q Consensus 82 ~~~~~~~f~~~~~~~~------------------------------~~r~~~~~------~~~~~~~~~~~~~~~~~~~~ 125 (512)
..+|+...-+.. ..++.+.. ...+++.+-+
T Consensus 144 ----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~---------- 209 (608)
T 3j16_B 144 ----IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL---------- 209 (608)
T ss_dssp ----HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHH----------
T ss_pred ----hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHc----------
Q ss_pred ccccccCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEc--CCChhHHHHHHHHHHHHhhc---Cc
Q psy673 126 DYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFD--ATNSTQARRNTIHHKIVEER---QY 200 (512)
Q Consensus 126 ~~~~~~~~~~~~~~~~fd~~n~~~~~~r~~~a~~~l~~~~~~l~~~g~~~i~D--atn~~~~~R~~~~~~~~~~~---~~ 200 (512)
|-....+-.-.+-+-+.++|-.+|...+.+ -++.|+| .++.....|..+.+ +.++. |.
T Consensus 210 --------gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~--------p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~ 272 (608)
T 3j16_B 210 --------QLENVLKRDIEKLSGGELQRFAIGMSCVQE--------ADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTK 272 (608)
T ss_dssp --------TCTGGGGSCTTTCCHHHHHHHHHHHHHHSC--------CSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTC
T ss_pred --------CCcchhCCChHHCCHHHHHHHHHHHHHHhC--------CCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCC
Q ss_pred eEEEEE
Q psy673 201 MLFFVE 206 (512)
Q Consensus 201 ~~~~~e 206 (512)
-+++++
T Consensus 273 tvi~vt 278 (608)
T 3j16_B 273 YVICVE 278 (608)
T ss_dssp EEEEEC
T ss_pred EEEEEe
No 487
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=75.76 E-value=1.9 Score=42.40 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccchhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~~r 75 (512)
.+++.|...-+|.||||+|..||..|...|.++-++..|..+
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 355555556799999999999999998888888777776543
No 488
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=75.33 E-value=1.2 Score=40.56 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCCchhhhhHHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
....|+++|.+++|||+|..++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999988874
No 489
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=75.09 E-value=1.2 Score=42.34 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhcCCcceeeccch
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGD 73 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~~~~~~~~~~~~ 73 (512)
.+++.|..+-.|.||||+|..||.+|...|.++-++..+.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4566666788999999999999999988788777777664
No 490
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=75.01 E-value=1.2 Score=42.31 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCR 57 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~ 57 (512)
..+..|+++|.+++||||+..+|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999998874
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=74.88 E-value=1 Score=40.70 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHH
Q psy673 34 TPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
.+..|+++|.+++|||++..+|.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998876
No 492
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=74.84 E-value=1.8 Score=43.78 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=34.2
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh--hcCCcceeeccc
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR--WLGLNVRLFNLG 72 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~--~~~~~~~~~~~~ 72 (512)
..+.++|+.|-.|.||||+|..||.++. ..|.++-++..+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4456788889999999999999999998 778888777776
No 493
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=74.77 E-value=1 Score=40.20 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCCCCchhhhhHH
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLC 56 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~ 56 (512)
..+..|+++|.+++|||++..+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998884
No 494
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=74.73 E-value=1.3 Score=44.68 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.1
Q ss_pred CCeEEEE--ecCCCCCCchhhhhHHHHhhh
Q psy673 34 TPQVVAM--VGLPARGKSYMATKLCRYLRW 61 (512)
Q Consensus 34 ~~~~i~~--vGlp~rGKS~~a~~l~~~l~~ 61 (512)
.+..+++ +|.||.|||++++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 5667778 999999999999999987753
No 495
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=74.63 E-value=3.7 Score=45.15 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeC
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~ 210 (512)
..+-++|+|++......-..++. .+...+++++++--.||
T Consensus 98 ad~~ilVvD~~~g~~~qt~~~~~-~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 98 ADAALVAVSAEAGVQVGTERAWT-VAERLGLPRMVVVTKLD 137 (665)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHH-HHHHTTCCEEEEEECGG
T ss_pred cCcEEEEEcCCcccchhHHHHHH-HHHHccCCEEEEecCCc
Confidence 35888999998765544445666 57778898888755555
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.62 E-value=1.3 Score=49.55 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-++++|-||+|||++|+.|+..+.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999883
No 497
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=74.61 E-value=2.2 Score=44.59 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=30.4
Q ss_pred cCCcEEEEcCCChhHHHHHHHHHHHHhhcCceEEEEEEEeC
Q psy673 170 KGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCD 210 (512)
Q Consensus 170 ~~g~~~i~Datn~~~~~R~~~~~~~~~~~~~~~~~~e~~~~ 210 (512)
..+-++|+|++....+.-..+.+ .+.+.+.+++++=--||
T Consensus 278 ad~~llviD~~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 278 SEVVAVVLDGEEGIIEQDKRIAG-YAHEAGKAVVIVVNKWD 317 (456)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHH-HHHHTTCEEEEEEECGG
T ss_pred CCEEEEEEeCCCCcCHHHHHHHH-HHHHcCCCEEEEEEChh
Confidence 34778899999876666666777 67778999888866666
No 498
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.60 E-value=1.3 Score=42.88 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
...++.++|-||+||||++..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998663
No 499
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.55 E-value=1.5 Score=40.86 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCCCchhhhhHHHHhhhc
Q psy673 34 TPQVVAMVGLPARGKSYMATKLCRYLRWL 62 (512)
Q Consensus 34 ~~~~i~~vGlp~rGKS~~a~~l~~~l~~~ 62 (512)
..-++.++|-.|+||||+.+.|+.. ...
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 3457888999999999999999988 543
No 500
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.39 E-value=1.3 Score=46.88 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCCCCCchhhhhHHHHhh
Q psy673 33 VTPQVVAMVGLPARGKSYMATKLCRYLR 60 (512)
Q Consensus 33 ~~~~~i~~vGlp~rGKS~~a~~l~~~l~ 60 (512)
..+.-|++.|-||+|||++|+.|+..++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 4566789999999999999999998873
Done!