RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy673
(512 letters)
>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzyme occurs as
a bifunctional enzyme with fructose-2,6-bisphosphatase.
The bifunctional enzyme catalyzes both the synthesis and
degradation of fructose-2,6-bisphosphate, a potent
regulator of glycolysis. This enzyme contains a P-loop
motif.
Length = 219
Score = 228 bits (583), Expect = 4e-72
Identities = 105/269 (39%), Positives = 149/269 (55%), Gaps = 56/269 (20%)
Query: 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFF 89
T + ++ MVGLPARGK+Y++ KL RYL W+G+ ++FN+G+YRR S +FF
Sbjct: 5 NFTNSKTLIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRSAVKAYSDY-EFF 63
Query: 90 RSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYA 149
R DNE + IR+Q AL AL D+ ++ +
Sbjct: 64 RPDNEEGMKIREQCALAALNDVLAYLNEE------------------------------- 92
Query: 150 LSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLC 209
GQVA FDATN+T+ RR I EE +FF+ES+C
Sbjct: 93 ---------------------SGQVAIFDATNTTRERRKMILD-FAEENGLKVFFLESIC 130
Query: 210 DDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTED--HLSYMQIYN 267
DDP+I+ RNIK VK + PDY+G P++A +DFM RI YEKQY+ L E LSY+++ +
Sbjct: 131 DDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRIECYEKQYEPLDEHDEDLSYIKVID 190
Query: 268 VGKRIVVHNETGPVQKRIVRFLMHLNITP 296
VG+ IVV+N G +Q RIV +LM++++TP
Sbjct: 191 VGQSIVVNNVQGYLQSRIVYYLMNIHVTP 219
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 147 bits (373), Expect = 4e-38
Identities = 122/443 (27%), Positives = 188/443 (42%), Gaps = 92/443 (20%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
+V MVGLP RGK+Y+A ++ RY +W GL R+F YRRR
Sbjct: 217 IVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE----------------- 259
Query: 97 LSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQI 156
RR + S T E I I
Sbjct: 260 --------------------------------RRGGAVSSPT-----GAAEVEFRIAKAI 282
Query: 157 ALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEE---RQYMLFFVESLCDDPD 213
A D+ +I K VA D TN+T ARR + I E R + FVE + ++ +
Sbjct: 283 A----HDMTTFICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSE 338
Query: 214 ILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTL---TEDHLSYMQIYNVGK 270
+ RN+ K P P+ + + I E Y++L T+ L+Y++I + +
Sbjct: 339 TIRRNVLRAKEMFPG----APEDFVDRYYEVIEQLEAVYKSLNPVTDCDLTYIRIED-TQ 393
Query: 271 RIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSK 330
++N +G + R+ L +LN TP +YLTR GE ++ + +GG+S LT G+ YS+
Sbjct: 394 TFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIGGNSRLTERGRAYSR 453
Query: 331 CLSD-FVSEKNLSDLRIWTS------------SKEAAKQTVAQCPGSHKE---------Y 368
L + F E + + + +S ++E+ Q S + +
Sbjct: 454 ALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYF 513
Query: 369 KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVL-TRLELIILKI 427
LDDI+ G CEGQ +++ +AD +Y WP GEC V RLE I I
Sbjct: 514 PTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDI 573
Query: 428 EHSKSNLLIVSHPAVLRCLLGYF 450
+ S + +L+VSH +L+ L YF
Sbjct: 574 QASTTPVLVVSHLHLLQGLYSYF 596
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 94.5 bits (235), Expect = 3e-22
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEA 353
+YL R GE+ NV+ L G DS LT G+ ++ L++ ++ +++ I++S +
Sbjct: 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKR 61
Query: 354 AKQTVAQ-CPGSHKEYKALDD---IHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQ 409
A+QT + D I G EG T E+ + AD + P
Sbjct: 62 AQQTAEPLAEELGLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPG 121
Query: 410 GECYKDVLTRLELIILKI--EHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFA 459
GE DV R+ + ++ +N+L+VSH V+R LL Y +
Sbjct: 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRALLAYLLGLDLEELW 173
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 87.5 bits (217), Expect = 3e-20
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDL-RIWTSSKEAA 354
+YL R GE+ N + L G D LT G+ ++ L ++ L +++S + A
Sbjct: 1 RLYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRA 60
Query: 355 KQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYID---TRADKFYNRWPQGE 411
+QT L + G EG T+ EI + +Y+ D P GE
Sbjct: 61 RQTAEAL-AIALGLPGLRERDFGAWEGLTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGE 119
Query: 412 CYKDVLTR----LELIILKIEHSKSNLLIVSHPAVLRCL 446
D++ R L+ +I + S N+LIVSH V+R L
Sbjct: 120 SLADLVERVEPALDELIATADASGQNVLIVSHGGVIRAL 158
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 77.9 bits (192), Expect = 6e-17
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 298 TVYLTRPGESINNVQAILGGDSD--LTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
+YL R GE+ N L GD+D LT G+E ++ L K + RI++S A
Sbjct: 1 RLYLVRHGETEWN-VERLQGDTDSPLTELGREQARALGKR--LKGIPFDRIYSSPLLRAI 57
Query: 356 QTVAQCPGSH----KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGE 411
QT + L + G EG T+ EI + D R P GE
Sbjct: 58 QTAEILAEALGLPIIVDPRLRERDFGDWEGLTFDEIKAEFPEELRAWLEDPADFRPPGGE 117
Query: 412 CYKDVLTRLELIILKI--EHSKSNLLIVSHPAVLRCL 446
DV R+E + ++ +H N+LIVSH V+R L
Sbjct: 118 SLADVYERVEAALEELLAKHPGGNVLIVSHGGVIRAL 154
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 64.6 bits (158), Expect = 3e-12
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 17/125 (13%)
Query: 345 RIWTSSKEAAKQTVAQCPGSHKEYKALDD----IHAGICEGQTYTEIYTNHCAQYIDTRA 400
+++S ++ DD + G EG+++ EI
Sbjct: 46 AVYSSPLSRCRELAEILAERRGLPIIKDDRLREMDFGDWEGRSWDEIPEA------YPEL 99
Query: 401 DKFYNRW-----PQGECYKDVLTRLELIILKI--EHSKSNLLIVSHPAVLRCLLGYFQEE 453
D + W P GE + D R+ + ++ H N+LIV+H V+R LL +
Sbjct: 100 DAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHLLGL 159
Query: 454 PPDRF 458
P +++
Sbjct: 160 PLEQW 164
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 56.9 bits (138), Expect = 8e-10
Identities = 36/165 (21%), Positives = 50/165 (30%), Gaps = 39/165 (23%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
+YL R GES N + G D LT G+E ++ L + E + RI++S + A
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 356 QTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKD 415
QT + + E R
Sbjct: 61 QTAEIILEELPGLPVE--VDPRLRE-----------------ARVLPALEELIA------ 95
Query: 416 VLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAY 460
H N+LIVSH VLR LL Y +
Sbjct: 96 ------------PHDGKNVLIVSHGGVLRALLAYLLGLSDEDILR 128
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 48.2 bits (115), Expect = 1e-06
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 47/169 (27%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
+YL R GE N + G D LT G++ ++ L + E+ + RI++S + A
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60
Query: 356 QTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKD 415
QT A+ I + + P D
Sbjct: 61 QT-----------------------------------AEII---LEGLFEGLPV---EVD 79
Query: 416 VLTRLELIILKIEHSK----SNLLIVSHPAVLRCLLGYFQEEPPDRFAY 460
R+ +L++ N+LIVSH +R LL +
Sbjct: 80 PRARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILS 128
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 47.0 bits (111), Expect = 6e-06
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
TVY+TR GE+ NV + G +S LT G +K L + + K+LS I++S E
Sbjct: 4 TVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERM--KDLSIHAIYSSPSERTL 61
Query: 356 QTVAQCPGSHK----EYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYN-----R 406
T G + +I+ GI EGQT +I QY D F+N +
Sbjct: 62 HTAELIKGERDIPIIADEHFYEINMGIWEGQTIDDIER----QYPD-DIQLFWNEPHLFQ 116
Query: 407 WPQGECYKDVLTR-LELIILKIE-HSKSNLLIVSHPAVLRCLLGYF 450
GE ++ V R +E + L +E H ++LIVSH A + L+G+F
Sbjct: 117 STSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLVGHF 162
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 39.2 bits (91), Expect = 7e-04
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
++ + G P GKS +A KL L + + +L D R
Sbjct: 1 IILITGPPGSGKSTLAKKLAEK-----LGIPVISLDDLLREEG------LAELDDGELDD 49
Query: 97 LSIRDQIALQALEDL--DDWIIKGGHF 121
+ I ++ + L++L +W+I G
Sbjct: 50 IDIDLELLEEILDELAKQEWVIDGVRE 76
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 35.1 bits (81), Expect = 0.047
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 299 VYLTRPGESINNVQAILGGDSD--LTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
VYL R GE+ N + + G SD LTA G++ + +++ K L I +S ++
Sbjct: 4 VYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERA--KELGITHIISSDLGRTRR 61
Query: 357 T---VAQCPGSHKEYKA-LDDIHAGICEGQ---TYTEIYTNHCAQYIDTRADKFYNRWPQ 409
T +AQ G + L +++ G+ E + + TE Q ++ D R P+
Sbjct: 62 TAEIIAQACGCDIIFDPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVD---GRIPE 118
Query: 410 GECYKDVLTRLELII---LKI-EHSKSNLLIVSHPAVLRCLLG 448
GE +++ R+ + L++ + S+ L+VSH L CL+
Sbjct: 119 GESMQELSDRMHAALESCLELPQGSRP--LLVSHGIALGCLVS 159
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 35.1 bits (81), Expect = 0.062
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 42 GLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74
GLP GKS A L L G+ V L+ G+
Sbjct: 10 GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 34.8 bits (81), Expect = 0.092
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL 68
PQ + +VGL GK+ A KL RY + GL V L
Sbjct: 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGL 128
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 33.4 bits (77), Expect = 0.10
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79
++ MVGLP GKS A +L R L V L + R+R
Sbjct: 1 LILMVGLPGSGKSTFARRLLRELGA----VVL-SSDTLRKRLR 38
>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 451
Score = 34.4 bits (80), Expect = 0.15
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66
P V+ MVGL GK+ A KL +YL+ G V
Sbjct: 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKV 131
>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase.
This model represents the metazoan
5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is
believed to be involved in repair of oxidative DNA
damage. Removal of 3' phosphates is essential for the
further processing of the break by DNA polymerases. The
central phosphatase domain is a member of the IIIA
subfamily (TIGR01662) of the haloacid dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases. As is
common in this superfamily, the enzyme is magnesium
dependent. A difference between this enzyme and other
HAD-superfamily phosphatases is in the third conserved
catalytic motif which usually contains two conserved
aspartate residues believed to be involved in binding
the magnesium ion. Here, the second aspartate is
replaced by a conserved arginine residue which may
indicate an interaction with the phosphate backbone of
the substrate. Very close relatives of this domain are
also found separate from the N- and C-terminal domains
seen here, as in the 3'-phosphatase found in plants. The
larger family of these domains is described by
TIGR01664. Outside of the phosphatase domain is a P-loop
ATP-binding motif associated with the kinase activity.
The entry for the mouse homolog, GP|7108591, appears to
be missing a large piece of sequence corresponding to
the first conserved catalytic motif of the phosphatase
domain as well as the conserved threonine of the second
motif. Either this is a sequencing artifact or this may
represent a pseudo- or non-functional gene. Note that
the EC number for the kinase function is: 2.7.1.78.
Length = 526
Score = 32.3 bits (73), Expect = 0.61
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 18/63 (28%)
Query: 9 TPQVVAMVGLPAREFSKMAFYQRTVT-----------------PQVVAMVGLPARGKSYM 51
TP+ +G PA F K AF R+V ++V VG P GKS+
Sbjct: 327 TPEEF-FLGKPAAGFEKPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHF 385
Query: 52 ATK 54
K
Sbjct: 386 CKK 388
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 31.5 bits (72), Expect = 1.3
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 140 DFFRSDNEYALSIRDQIALQALEDLD---DWIIKGGQVAFFDA 179
F + L LQAL DLD ++ G AFFDA
Sbjct: 84 PIFAASFSATLRRGSGDGLQALRDLDQLRQFLTGPGLFAFFDA 126
>gnl|CDD|190601 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
protein.
Length = 468
Score = 31.2 bits (72), Expect = 1.4
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 189 TIHHKIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRI 245
+ + R+ L +++ L D D+++ I + + + E + E+ + +I
Sbjct: 16 IVREFKIGGRKAALVYIDGLVDK-DLINEYILKPLMNEELEEEEEKEDILEEILKKI 71
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 30.0 bits (67), Expect = 1.5
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDN 93
+V+ +VG P GK+ +A L R L G V + D + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 94 EY-ALSIRDQIALQALEDLDDWII 116
L +R +AL A + D +I
Sbjct: 61 GSGELRLRLALAL-ARKLKPDVLI 83
>gnl|CDD|217899 pfam04108, APG17, Autophagy protein Apg17. Apg17 is required for
activating Apg1 protein kinases.
Length = 408
Score = 30.8 bits (70), Expect = 2.0
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 318 DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKE 367
G+E K L DF+SE + LR + K + + P +
Sbjct: 102 PLAFRPKGEEP-KTLYDFISEDGVELLR------DNLKIYIKEVPAIRAQ 144
>gnl|CDD|129929 TIGR00849, gutA, PTS system, glucitol/sorbitol-specific IIA
component. Bacterial PTS transporters transport and
concomitantly phosphorylate their sugar substrates, and
typically consist of multiple subunits or protein
domains. This family consists only of glucitol-specific
transporters, and occur both in Gram-negative and
Gram-positive bacteria.The system in E.Coli consists of
a IIA protein, and a IIBC protein. This family is
specific for the IIA component [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids,
Signal transduction, PTS].
Length = 121
Score = 28.7 bits (64), Expect = 2.9
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 308 INNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGS-HK 366
I V+ L GG Y V+EKNL L T + + VA+ PG+ H
Sbjct: 45 IKEVKGTLKPGQVFMIGGIAYPVTAVGDVAEKNLRSLGHITVRFDGSN--VAEFPGTVHV 102
Query: 367 EYKALDDIHAG 377
E K I G
Sbjct: 103 EGKEPPKIKPG 113
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 29.6 bits (67), Expect = 3.0
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 20/161 (12%)
Query: 300 YLTRPGESINNVQAILGGDSD--LTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQT 357
+L R GE+ NV + G + LTA G E ++ L + +++ + S E A+ T
Sbjct: 4 WLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLL--RDVPFDLVLCSELERAQHT 61
Query: 358 VAQCPGSHKE----YKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW-----P 408
+ L+++ G E + + ++ Y D W
Sbjct: 62 ARLVLSDRQLPVHIIPELNEMFFGDWEMRHHRDLMQEDAENYAAWCND-----WQHAIPT 116
Query: 409 QGECYKDVLTRLELII--LKIEHSKSNLLIVSHPAVLRCLL 447
GE ++ R+E I L NLLIVSH VL L+
Sbjct: 117 NGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLI 157
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 30.1 bits (69), Expect = 3.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 47 GKSYMATKLCRYLRWLGLNVRLF 69
GKS + LCR L G V F
Sbjct: 15 GKSTLVAGLCRILARRGYRVAPF 37
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 29.6 bits (67), Expect = 3.8
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 28/112 (25%)
Query: 27 AFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN------------LGDY 74
A Y RT V+ + G+P GKS + L R LR G V + LGD
Sbjct: 43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD- 101
Query: 75 RRRHASISSATHDFFRSD------NEYALSIRDQIALQALEDLD----DWII 116
R R ++ F RS + + R+ I L LD D II
Sbjct: 102 RIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKL-----LDAAGYDVII 148
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 28.8 bits (65), Expect = 5.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 408 PQGECYKDVLTRL----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P E KD + R+ E I S N+LIV+H LR L+ Y
Sbjct: 147 PLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKY 192
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with
the signal sequence when it emerges from the ribosome.
SRP54 of the signal recognition particle has a
three-domain structure: an N-terminal helical bundle
domain, a GTPase domain, and the M-domain that binds
the 7s RNA and also binds the signal sequence. The
extreme C-terminal region is glycine-rich and lower in
complexity and poorly conserved between species. The
GTPase domain is evolutionary related to P-loop NTPase
domains found in a variety of other proteins.
Length = 197
Score = 28.5 bits (65), Expect = 6.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
P V+ +VG GK+ KL L+
Sbjct: 1 PGVILLVGPNGVGKTTTIAKLAARLK 26
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.4 bits (64), Expect = 6.4
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78
V+ GL GKS +A L L G +V L + GD R
Sbjct: 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVRHG 65
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 28.9 bits (65), Expect = 6.8
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 12 VVAMVGLPAREFSKMAFYQRTVTPQ-------VVAMVGLPA--RGK-SYMATKLCRYLRW 61
V+A++G RE + F +R + P+ VVA PA R K +Y AT + Y R
Sbjct: 188 VIALIGERGREVRE--FIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD 245
Query: 62 LGLNVRL 68
GLNV L
Sbjct: 246 QGLNVML 252
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.4 bits (64), Expect = 7.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78
P V + G P GK+ +A L L G NV + + R H
Sbjct: 11 RPVAVLLGGQPGAGKTELARALLEELG--GGNVVRIDPDELRTYH 53
>gnl|CDD|224409 COG1492, CobQ, Cobyric acid synthase [Coenzyme metabolism].
Length = 486
Score = 28.7 bits (65), Expect = 7.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 RGKSYMATKLCRYLRWLGLNVRLF 69
GKS++ LCR L G V F
Sbjct: 13 AGKSFLVAGLCRILARRGYRVAPF 36
>gnl|CDD|219839 pfam08433, KTI12, Chromatin associated protein KTI12. This is a
family of chromatin associated proteins which interact
with the Elongator complex, a component of the
elongating form of RNA polymerase II. The Elongator
complex has histone acetyltransferase activity.
Length = 266
Score = 28.4 bits (64), Expect = 7.5
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHAS-ISSATHDFFRSDNEYA 96
+ + GLP+ GKS A +L +YL G +V + + S F R A
Sbjct: 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESLGIESDDYKDSKKEKFLRGSLRSA 61
>gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 28.7 bits (65), Expect = 8.0
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 459 AYKVRKKTHFLLSSRNMTLELIFPHHSTGT 488
K KK L + L LIF ST T
Sbjct: 29 ELKAAKKAGKELKLKGKNLALIFEKTSTRT 58
>gnl|CDD|216209 pfam00946, Mononeg_RNA_pol, Mononegavirales RNA dependent RNA
polymerase. Members of the Mononegavirales including
the Paramyxoviridae, like other non-segmented negative
strand RNA viruses, have an RNA-dependent RNA polymerase
composed of two subunits, a large protein L and a
phosphoprotein P. This is a protein family of the L
protein. The L protein confers the RNA polymerase
activity on the complex. The P protein acts as a
transcription factor.
Length = 1065
Score = 28.8 bits (65), Expect = 9.2
Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 12/154 (7%)
Query: 327 EYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTE 386
+ L V + S L + S K LDD+ +
Sbjct: 77 SINPELLRIVDPHDSSQLEELLKLVNRELSII-----SSKVEDFLDDLGYKLKGKDKLFL 131
Query: 387 IYTNHCAQ-YIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 445
+D A W + + T L +I + S ++L
Sbjct: 132 TSLAPLCNSILDLHAVMLILNWYDFSTWFTIKTELRSLIKTFRKVEVR----STGSILVV 187
Query: 446 LLGYFQE--EPPDRFAYKVRKKTHFLLSSRNMTL 477
+ P+ ++ + M L
Sbjct: 188 IETRSGGVVISPELVIIIDKQLKRIYYLTYEMVL 221
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,555,520
Number of extensions: 2615597
Number of successful extensions: 2084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 55
Length of query: 512
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 411
Effective length of database: 6,457,848
Effective search space: 2654175528
Effective search space used: 2654175528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.0 bits)