RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy673
(512 letters)
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 363 bits (933), Expect = e-121
Identities = 165/462 (35%), Positives = 253/462 (54%), Gaps = 76/462 (16%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
++ MVGLPARGK+Y++ KL RYL ++G+ R FN+G YRR + +FF DNE
Sbjct: 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYK-SFEFFLPDNEEG 99
Query: 97 LSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQI 156
L IR Q AL AL D+ ++ + G
Sbjct: 100 LKIRKQCALAALNDVRKFLSEEG------------------------------------- 122
Query: 157 ALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDILD 216
G VA FDATN+T+ RR I + E+ Y FFVES+C DP+++
Sbjct: 123 ---------------GHVAVFDATNTTRERRAMIFNFG-EQNGYKTFFVESICVDPEVIA 166
Query: 217 RNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTED---HLSYMQIYNVGKRIV 273
NI +VKL PDY + D+A EDFM RI YE Y++L E+ LSY++I +VG+ V
Sbjct: 167 ANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYV 226
Query: 274 VHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLS 333
V+ +Q RIV +LM++++TPR++YL R GES N++ +GGD L+ G+E+SK L+
Sbjct: 227 VNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLA 286
Query: 334 DFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCA 393
F+S++N+ DL+++TS + QT ++++K L++I AG+CE TY EI ++
Sbjct: 287 QFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPL 346
Query: 394 QYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEE 453
++ DK+ R+P+GE Y+D++ RLE +I+++E + N+L++ H AV+RCLL YF ++
Sbjct: 347 EFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQE-NVLVICHQAVMRCLLAYFLDK 405
Query: 454 PPDRFAYKVRKKTHFLLSSRNMTLELIFPHHSTGTLRPQPFG 495
+ Y L P H+ L P +G
Sbjct: 406 AAEELPY------------------LKCPLHTVLKLTPVAYG 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 362 bits (931), Expect = e-120
Identities = 173/470 (36%), Positives = 264/470 (56%), Gaps = 77/470 (16%)
Query: 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFF 89
+ T +P V+ MVGLPARGK+Y++ KL RYL W+G+ ++FN+G+YRR ++++FF
Sbjct: 30 KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK-QYSSYNFF 88
Query: 90 RSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYA 149
R DNE A+ +R Q AL AL D+ ++ K
Sbjct: 89 RPDNEEAMKVRKQCALAALRDVKSYLAKE------------------------------- 117
Query: 150 LSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLC 209
GGQ+A FDATN+T+ RR+ I H +E + FF+ES+C
Sbjct: 118 ---------------------GGQIAVFDATNTTRERRHMILHFA-KENDFKAFFIESVC 155
Query: 210 DDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH----LSYMQI 265
DDP ++ NI EVK++ PDY+ +A +DFM RI YE YQ L D LS +++
Sbjct: 156 DDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKV 215
Query: 266 YNVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDLTAGG 325
+VG+R +V+ +Q RIV +LM++++ PRT+YL R GE+ +N+Q +GGDS L++ G
Sbjct: 216 IDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRG 275
Query: 326 QEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYT 385
++++ LS FV E+NL DLR+WTS ++ QT ++++KAL++I AG+CE TY
Sbjct: 276 KKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYE 335
Query: 386 EIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 445
EI + +Y DK+Y R+P GE Y+D++ RLE +I+++E + N+L++ H AVLRC
Sbjct: 336 EIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQE-NVLVICHQAVLRC 394
Query: 446 LLGYFQEEPPDRFAYKVRKKTHFLLSSRNMTLELIFPHHSTGTLRPQPFG 495
LL YF ++ + Y L P H+ L P +G
Sbjct: 395 LLAYFLDKSAEEMPY------------------LKCPLHTVLKLTPVAYG 426
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 78.4 bits (194), Expect = 6e-17
Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 11/175 (6%)
Query: 290 MHLNITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIW 347
M + + + L R GE+ + G + +LT G+ ++ + E L D +
Sbjct: 4 MAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVI 63
Query: 348 TSSKEAAKQTVAQCPGSHKEY-KALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNR 406
S + T + E L + G EG T +I + + T
Sbjct: 64 CSPRRRTLDTAKLAGLTVNEVTGLLAEWDYGSYEGLTTPQIRESEPDWLVWTHGC----- 118
Query: 407 WPQGECYKDVLTRLELIILKI--EHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFA 459
P GE V R + + S ++L VSH R ++ + + P +
Sbjct: 119 -PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHGHFSRAVITRWVQLPLAEGS 172
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 77.6 bits (192), Expect = 1e-16
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
T+YLTR GE+ NV+ + G DS LT G++ + L + L+ I+TS+ A
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELA--AIYTSTSGRAL 60
Query: 356 QT---VAQCPG-SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGE 411
+T V + + L +IH G EG+T+ EI + +GE
Sbjct: 61 ETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGE 120
Query: 412 CYKDVLTRLELIILKI--EHSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
+ DV R + I H +LIV+H VL+ L+ F++ P D
Sbjct: 121 RFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHL 169
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 64.9 bits (159), Expect = 1e-12
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 299 VYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
++L R GE++ N + L G D LTA G+ ++ L L L ++S A++
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGA-----LPSLPAFSSDLLRARR 57
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDV 416
T S + Y L +IH G EG + + +Y + P GE
Sbjct: 58 TAELAGFSPRLYPELREIHFGALEGALWETLD----PRYKEALLRFQGFHPPGGESLSAF 113
Query: 417 LTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEP 454
R+ + ++ ++ +H V+R +L E+
Sbjct: 114 QERVFRFLEGLKA---PAVLFTHGGVVRAVLRALGEDG 148
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 13/169 (7%)
Query: 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKE 352
+YL R G+ + L G D + Q+ K I +S
Sbjct: 4 KTLNIYLMRHGKV--DAAPGLHGQTDLKVKEAEQQQIAMAWKT---KGYDVAGIISSPLS 58
Query: 353 AAKQT---VAQCPG-SHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWP 408
+A+ L ++ G +G + + + + ++ P
Sbjct: 59 RCHDLAQILAEQQLLPMTTEDDLQEMDFGDFDGMPFDLLTEHW-KKLDAFWQSPAHHSLP 117
Query: 409 QGECYKDVLTRLELIILKI-EHSKSNLLIVSHPAVLRCLLGYFQEEPPD 456
E R+ +I NLLIV+H V+R +L +
Sbjct: 118 NAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIRIILAHVLGVDWR 166
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 59.0 bits (142), Expect = 6e-10
Identities = 31/220 (14%), Positives = 58/220 (26%), Gaps = 50/220 (22%)
Query: 289 LMHLNITPRTVYLTRPGESINNV-------------------------------QAILGG 317
+ I+ R + + R GE ++ V I
Sbjct: 2 MGSATISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDF 61
Query: 318 DSD--LTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALD-DI 374
++D L++ G ++ + + + + ++ S QT K K L +
Sbjct: 62 ENDPPLSSCGIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRV 121
Query: 375 HAGICEGQTYTEIYTNHCAQYIDTRADKFYN------------RWPQGE----CYKDVLT 418
GI E + ++ + +N E +
Sbjct: 122 EPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPRCSLMPAESYDQYVERCAV 181
Query: 419 RLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
+ II LIVSH + L PP
Sbjct: 182 SMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPREC 221
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 58.6 bits (141), Expect = 9e-10
Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 22/209 (10%)
Query: 269 GKRIVV--HNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSD--LTAG 324
+ + H E + N T L P + + G D LT
Sbjct: 4 RRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRL 63
Query: 325 GQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKALD-DIHAGICEGQ- 382
G ++ + + + +S ++ S +T + ++ + G+ E +
Sbjct: 64 GWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKN 123
Query: 383 ----------TYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTR----LELIILKIE 428
T E+ +D + E + R ++ + E
Sbjct: 124 WHMPKGIDFMTPIELCKAGLN--VDMTYKPYVEMDASAETMDEFFKRGEVAMQAAVNDTE 181
Query: 429 HSKSNLLIVSHPAVLRCLLGYFQEEPPDR 457
N++ + H L ++G D
Sbjct: 182 KDGGNVIFIGHAITLDQMVGALHRLRDDM 210
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 56.8 bits (137), Expect = 2e-09
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 23/178 (12%)
Query: 291 HLNITPRTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSS 350
+L + + A+ + L+ G E ++ S K L RI +S+
Sbjct: 16 NLYFQGMHALYITHPQVKID-PAVPVPEWGLSERGAERAREASRLPWAKALR--RIVSSA 72
Query: 351 KEAAKQTVAQCPGSH----KEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYN- 405
+ A +T + + +A+ + E + AD F+
Sbjct: 73 ETKAIETAHMLAETSGAAIEIIEAMHENDRSATGFLPPPEF---------EKAADWFFAH 123
Query: 406 ---RWPQGECYKDVLTRLELIILKI--EHS-KSNLLIVSHPAVLRCLLGYFQEEPPDR 457
+ E D R+ + + H + + V H V L + + R
Sbjct: 124 PEESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGGVGTLLKCHIEGRGISR 181
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 55.8 bits (135), Expect = 5e-09
Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 36/190 (18%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLR---IWTSSKE 352
T+Y+TR G++I N G DS L G E + L L D+ ++S
Sbjct: 15 TLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLG-----TGLKDIHFMNAYSSDSG 69
Query: 353 AAKQT----VAQCPGSHKEYKALDD---IHAGICEGQTYTEIYTNHCAQYIDTRADKFYN 405
A +T + S + + ++ GI EG+ ++ T ++
Sbjct: 70 RAIETANLVLKYSEQSKLKLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLK 129
Query: 406 RW--------------PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCL 446
Q E ++ TR+ ++ + N+L+V H ++ L
Sbjct: 130 FSIQEVIDLIRAADPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHGLLITTL 189
Query: 447 LGYFQEEPPD 456
+
Sbjct: 190 IEMLDSSKTK 199
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 53.5 bits (128), Expect = 4e-08
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 17/156 (10%)
Query: 318 DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQC-PGSHKEYKALDDIHA 376
D+ +T G ++ + + + E N ++ S QT G ++ +
Sbjct: 55 DAPITVFGCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEP 114
Query: 377 GICEGQTYTEIYTNHCAQYIDTRADKFYNRW------------PQGECYKDVLTR----L 420
G+ E + T A + E Y + R
Sbjct: 115 GLFEWTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVT 174
Query: 421 ELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 456
+ II + + +N+LIV+H + L Q P
Sbjct: 175 KEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQ 210
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 52.1 bits (125), Expect = 1e-07
Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 59/223 (26%)
Query: 294 ITPRTVYLTRPGESINNVQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSS 350
+ + + R GE+ N +L G D+ L+ G + + ++ + + + ++ S+
Sbjct: 1 MLTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLKDLHFT--NVFVSN 58
Query: 351 KEAAKQT--------VAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADK 402
+ A QT + L + G+ EG+ + A+
Sbjct: 59 LQRAIQTAEIILGNNLHSSATEMILDPLLRERGFGVAEGRPKEHL---------KNMANA 109
Query: 403 FYNRW-----PQGECYKDVLTRL--------------------------------ELIIL 425
P GE + V TR L
Sbjct: 110 AGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEADQPVIAGLADD 169
Query: 426 KIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAYKVRKKTHF 468
++ + L+VSH A +R + + E+ ++ F
Sbjct: 170 GAQNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVF 212
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 50.2 bits (120), Expect = 3e-07
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 297 RTVYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
R ++L R + +V L D LT G+E ++ ++ L +I SS A +
Sbjct: 11 RHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIE 68
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW-PQGECYKD 415
T + + EG D + W P+ Y +
Sbjct: 69 TTDIISRHLPGVCKVST--DLLREGAPI--------------EPDPPVSHWKPEAVQYYE 112
Query: 416 VLTRLELIILKI-------EHSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
R+E + S + + H V+R ++ + PP+ +
Sbjct: 113 DGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRALQFPPEGW 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 62/416 (14%), Positives = 124/416 (29%), Gaps = 114/416 (27%)
Query: 140 DFFRSDNEYALSIRD--QIALQAL-EDLD-----DW---IIKGGQVAFF--DATNSTQAR 186
DF E+ +D + A ++ D D I+ ++ +
Sbjct: 8 DF--ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 187 R--NTIHHKIVEERQYMLFFVESLCDDPDILDRNIK-EVKLTGPDYQGFEP--DKAYED- 240
R T+ K +E F E L + L IK E + + + D+ Y D
Sbjct: 66 RLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 241 ------FMYRIGHYEKQYQTLTEDHLSYMQIYNVGKRIVVHNETG--------------P 280
+ R + Y L + L ++ K +++ G
Sbjct: 124 QVFAKYNVSR----LQPYLKLRQ-ALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 281 VQKRIVRFLMH-LNITPRTVYLTRPGESINNVQAILGG-DSDLTAGGQEYSKCLSDFVSE 338
VQ ++ F + LN+ P + +Q +L D + T+ ++S + +
Sbjct: 176 VQCKMD-FKIFWLNLK----NCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHS 229
Query: 339 KNLSDLRIWTSSKEAAKQTVAQCPGSHKEYKA----LDDIHAGICEGQTYTEIYTNHCAQ 394
R+ K Y+ L + + + + + C
Sbjct: 230 IQAELRRLL----------------KSKPYENCLLVLLN----VQNAKAW-NAFNLSCKI 268
Query: 395 YIDTRADKFYNRWPQGECYKDV--------LTR---LELIILKIEHSKSNL---LIVSHP 440
+ TR K + + LT L++ ++ +L ++ ++P
Sbjct: 269 LLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 441 AVLRCLLGYFQEEPPDRFAY----KVRKKTHFLLSS---------RNMTLEL-IFP 482
L ++ + + K T + SS R M L +FP
Sbjct: 328 RRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 41.4 bits (96), Expect = 8e-04
Identities = 61/493 (12%), Positives = 135/493 (27%), Gaps = 125/493 (25%)
Query: 25 KMAFYQRTVTPQVV--AMVGLPARGKSYMATKLCRYLR----------WLGLNVRLFNLG 72
+ A + V+ ++G GK+++A +C + WL NL
Sbjct: 141 RQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWL-------NLK 190
Query: 73 DYRRRHASISSATHDFFRSDNEYALSIRDQIALQAL-EDLDDWIIKGGHFPQLGDYRRRH 131
+ + LQ L +D + + R
Sbjct: 191 NCNSPETVL---------------------EMLQKLLYQIDPNWTSRSDHSS--NIKLRI 227
Query: 132 ASGSRATHDFFRSDNEYALSIRDQIALQALEDLDD----WIIKGGQVAF----------- 176
S +S Y L L + AF
Sbjct: 228 HSIQAELRRLLKS-KPYE---------NCLLVLLNVQNAKAWN----AFNLSCKILLTTR 273
Query: 177 ----FDATNSTQARRNTIHH--KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQ 230
D ++ ++ H + + ++ L P L R EV T P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRL 330
Query: 231 GFEPDKAYEDFMYRIGHYEKQYQTLTEDHLSYMQIYNVGKRIVVHNETGPVQKR---IVR 287
++ D + +++ H++ ++ + + + E +K +
Sbjct: 331 SIIA-ESIRDGLATWDNWK---------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 288 FLMHLNITPRTVYLTRPGESINNVQAILGGD---SDLTAGGQEYSKCLSDFVSEKNLSDL 344
F +I + L ++V ++ S + +E + + +L
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLEL 435
Query: 345 RIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDT--RADK 402
++ ++ A +++ K + DD+ + Y Y +H ++ ++
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQ--Y--FY-SHIGHHLKNIEHPER 489
Query: 403 FYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPA----VLRCLLGYFQEEPPDRF 458
++ V + KI H + L+ Y + P ++
Sbjct: 490 M-------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KY 541
Query: 459 AYKVRKKTHFLLS 471
V FL
Sbjct: 542 ERLVNAILDFLPK 554
Score = 40.6 bits (94), Expect = 0.001
Identities = 46/307 (14%), Positives = 90/307 (29%), Gaps = 78/307 (25%)
Query: 7 TVTPQVVAMVGLPAREFSKMAFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66
T P+ ++++ R+ A ++ + + ++
Sbjct: 324 TTNPRRLSIIAESIRDG--------------------LATWDNWKHVNCDKLTTIIESSL 363
Query: 67 RLFNLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQ--- 123
+ +YR+ +S F I L + W
Sbjct: 364 NVLEPAEYRKMFDRLS-----VFPPSA--------HIPTILLSLI--WFDVIKSDVMVVV 408
Query: 124 --LGDYR---RRHASGSRATHDFFRS-----DNEYAL--SIRDQIALQALEDLDDWIIKG 171
L Y ++ + + + +NEYAL SI D + D DD I
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 172 GQVAFFDATNSTQARRNTI-HH-KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDY 229
F+ + I HH K +E + M F D L++ I+
Sbjct: 469 LDQYFY----------SHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNAS 517
Query: 230 QGFEPD----KAYEDFMYRIGHYEKQYQTLTEDHLSYMQIYNVGKRIVVHNETGPVQKRI 285
K Y+ + I + +Y+ L L ++ + + ++ T +
Sbjct: 518 GSILNTLQQLKFYKPY---ICDNDPKYERLVNAILDFLP--KIEENLICSKYT-----DL 567
Query: 286 VRF-LMH 291
+R LM
Sbjct: 568 LRIALMA 574
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 44.7 bits (106), Expect = 2e-05
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 31/175 (17%)
Query: 295 TPRTVYLTRPGESINNVQAILGGDSD--LTAGGQE----YSKCLSDFVSEKNLSDLRIWT 348
T + + L R G+ + ++ LT G + K L D ++ K +S I+
Sbjct: 20 TTKHIILVRHGQYERRYK---DDENSKRLTKEGCKQADITGKKLKDILNNKKVS--VIYH 74
Query: 349 SSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWP 408
S AK+T + ++D + EG Y +
Sbjct: 75 SDMIRAKETANIISKYFPDANLIND--PNLNEGTPYLPD-------------PLPRHSKF 119
Query: 409 QGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
+ K+ R+ L++ H V+R L + P +
Sbjct: 120 DAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRALQIPLFAW 174
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 42.0 bits (98), Expect = 1e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
VV + G+P G + + LR G+N ++ + G A + D D
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD---RDQMRK 61
Query: 97 LSIRDQIALQ--ALEDL-----DDWIIKGGHF 121
+ Q +Q A + + + H
Sbjct: 62 MDPETQKRIQKMAGRKIAEMAKESPVAVDTHS 93
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 42.5 bits (100), Expect = 2e-04
Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 62/223 (27%)
Query: 290 MHLNITPRTVYLTRPGESINNVQAILGG---DSDLTAGGQEYSKCLSDFVSEKNLSDLR- 345
++ + + R GE+ N + I+ G D L+ G + + F L++++
Sbjct: 2 LYFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIF-----LNNVKF 56
Query: 346 --IWTSSKEAAKQT---VAQCPGSHKE-----YKALDDIHAGICEGQTYTEIYTNH---- 391
++S KQT + + K+ L + G+ EG+ +E+
Sbjct: 57 THAFSSDLMRTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAR 116
Query: 392 ------------CAQYIDTRADKFYNRW-----------------PQGECYKDVLTRL-- 420
+ R F+ C + L +
Sbjct: 117 EECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFP 176
Query: 421 ---ELIILKIEHSKS-----NLLIVSHPAVLRCLLGYFQEEPP 455
S ++L+VSH A +R L YF +
Sbjct: 177 LGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLK 219
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 41.6 bits (98), Expect = 3e-04
Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 35/198 (17%)
Query: 293 NITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDL-----R 345
++TPR + R G++ + G D LT G+ + V N
Sbjct: 3 SLTPR-CIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITY 61
Query: 346 IWTSSKEAAKQTVAQCPGSHKEYKALDDI-----------HAGICEGQTYTEIYTNHCAQ 394
I+TS + A+QT + I G EG EI ++
Sbjct: 62 IFTSPRLRARQT-VDLVLKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSR 120
Query: 395 YIDTRADKFYNRW----PQGECYKDVLTRLELIILKI---------EHSKSNLLIVSHPA 441
+D + +N W GE + + RL I +I E S++++ +H
Sbjct: 121 GLDKE--RPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKHQSEGRASDIMVFAHGH 178
Query: 442 VLRCLLGYFQEEPPDRFA 459
LR + +
Sbjct: 179 ALRYFAAIWFGLGVQKKC 196
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 41.0 bits (96), Expect = 5e-04
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
++ + GLP GKS + L + L ++V + R +F +
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65
Query: 97 L 97
+
Sbjct: 66 I 66
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 40.4 bits (94), Expect = 8e-04
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
+++ +G P GKS A + N DYR+ + + E
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKE 57
Query: 95 -YALSIRDQIALQALEDLDDW 114
++ A L D
Sbjct: 58 GIVTGMQFDTAKSILYGGDSV 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 39.3 bits (91), Expect = 0.001
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
+ + G+P GKS + K+ L G+N ++ N GD+ A D D
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKD---RDEMRK 59
Query: 97 LSIRDQIALQ--ALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEY 148
LS+ Q LQ A + + + GG D TH R+ + Y
Sbjct: 60 LSVEKQKKLQIDAAKGIAEEARAGGEGYLFID-----------THAVIRTPSGY 102
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR-HASISSATHDFFRSD 92
TP ++ + G PA GK+ ++ L LR L + ++ + + ++ R
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGLRL-----PLLSKDAFKEVMFDGLGWSDREWSRRV 58
Query: 93 NEYALSIRDQIALQALEDLDDWII 116
A+ + A L+ I+
Sbjct: 59 GATAIMMLYHTAATILQSGQSLIM 82
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
+++ +G P GKS A + N DYR+ + + E
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKE 57
Query: 95 -YALSIRDQIALQALEDLDDW 114
++ A L D
Sbjct: 58 GIVTGMQFDTAKSILYGGDSV 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 71/470 (15%), Positives = 134/470 (28%), Gaps = 140/470 (29%)
Query: 78 HASISSATHDFFRSDNEYALSIRDQIA--LQALEDLDDWIIKGGHFPQ-----LGDYRRR 130
+ + T + F +D+E + + + L + L + K G F Q L ++
Sbjct: 38 NKILPEPT-EGFAADDEPT-TPAELVGKFLGYVSSLVEPS-KVGQFDQVLNLCLTEFENC 94
Query: 131 HASGSRATHDF---FRSDNEYALSIRDQIA---LQALEDLDDWIIKGGQVAFFDATNSTQ 184
+ G H +N+ L ++ + A K A F A
Sbjct: 95 YLEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 185 ARRNTIHHKIVEERQYMLF---------FVESLCDDPDILDRNIKEVKLTGPDYQGFEPD 235
A+ + +F F E L R++ YQ +
Sbjct: 154 AQ---L---------VAIFGGQGNTDDYFEE-L--------RDL---------YQTYHV- 182
Query: 236 KAYEDFMYRIGHYEKQYQTLTEDHLSYMQIYNVGKRIV--VHN-ETGP------------ 280
D + + L L +++ G I+ + N P
Sbjct: 183 -LVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 281 -----VQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILGGDSDL-TAGGQEYSKCLSD 334
+Q L H +T + + T PGE + ++ G L TA +
Sbjct: 239 PLIGVIQ------LAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 335 FVSEKNLSD-LRI--WTSSKEAAKQTVAQCPGSHKEYKALDDIHAGI------CEGQTYT 385
F ++ + + + + + + + G+ T
Sbjct: 292 F--FVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 386 EIYTNHCAQYIDTRADKFYNRWPQGECYKDVLTRLELIILKIEHSKSNLLIVSHPAVLRC 445
+ + +K + P G+ ++E I L NL++ P L
Sbjct: 348 Q---------VQDYVNKTNSHLPAGK-------QVE-ISLVN--GAKNLVVSGPPQSLYG 388
Query: 446 LLGYFQEE--PPD----RFAYKVRK---KTHFL-LSSRNMTLELIFPHHS 485
L ++ P R + RK FL ++S P HS
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---------PFHS 429
Score = 39.3 bits (91), Expect = 0.004
Identities = 56/335 (16%), Positives = 93/335 (27%), Gaps = 133/335 (39%)
Query: 136 RATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGG---QVAFFDATNSTQARRNTIHH 192
RA D D Y SI D I+ F + R N
Sbjct: 1648 RA--DNHFKDT-YGFSILD-------------IVINNPVNLTIHFGGEKGKRIREN---- 1687
Query: 193 KIVEERQYMLFFVESLCDDPDILDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQY 252
Y E++ D ++ KE+ Y F + + +
Sbjct: 1688 -------YSAMIFETIVDGKLKTEKIFKEINEHSTSYT-FRSE---KGLL---------- 1726
Query: 253 QTLTEDHLSYMQIYNVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQ 312
+ T+ + Q + + ++K L + P G S
Sbjct: 1727 -SATQ----FTQP-----ALTL------MEKAAFEDLKSKGLIPADATFA--GHS----- 1763
Query: 313 AILGGDSDLTAGGQEYS--KCLSDFVSEKNLSDL------RIWTSSKEAAKQTVAQCPGS 364
LG EY+ L+D +S + L R + V +
Sbjct: 1764 --LG----------EYAALASLADVMS---IESLVEVVFYR-----GMTMQVAVPRDELG 1803
Query: 365 HKEY----------------KALDDIHAGICEGQTYT-EIYTNH-CA--QYI---DTRA- 400
Y +AL + + + + EI N+ QY+ D RA
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLRAL 1862
Query: 401 DKFYNRWPQGECYKDVLTRLEL--I-ILKIEHSKS 432
D N VL ++L I I++++ S S
Sbjct: 1863 DTVTN----------VLNFIKLQKIDIIELQKSLS 1887
Score = 33.1 bits (75), Expect = 0.30
Identities = 52/364 (14%), Positives = 94/364 (25%), Gaps = 155/364 (42%)
Query: 32 TVTPQVVAMVGLPARGKSY-----MATKLCRYLRWLGLNV-RLFNLGDYRRRHASISSAT 85
+ +V V A S+ K L ++G+ + + S+ +
Sbjct: 272 GHSQGLVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-------PNTSLPPSI 323
Query: 86 HDFFRSDNE----YALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDF 141
+ +NE LSI + E + D++ + H +
Sbjct: 324 LEDSLENNEGVPSPMLSISN----LTQEQVQDYV----------NKTNSHLPAGKQVE-- 367
Query: 142 FRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYM 201
I+L N +N
Sbjct: 368 --------------ISL---------------------VNG---AKN------------- 376
Query: 202 LFFV-----ESLCDDPDILDRNIKEVK-LTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTL 255
V +SL L+ +++ K +G D Q P F R + ++ +
Sbjct: 377 --LVVSGPPQSLYG----LNLTLRKAKAPSGLD-QSRIP------FSERKLKFSNRFLPV 423
Query: 256 TED-HLSYMQIYNVGKRIVVHNETGPVQKRIVRFLMHLNITPR------TVYLTRPGESI 308
H + P I + L+ N++ VY T G
Sbjct: 424 ASPFHSHLLV---------------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDG--- 465
Query: 309 NNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTVAQCPGSHKEY 368
SDL + S +S+ + + + W E Q A +H
Sbjct: 466 ----------SDL----RVLSGSISERIVDCIIRLPVKW----ETTTQFKA----TH--- 500
Query: 369 KALD 372
LD
Sbjct: 501 -ILD 503
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.5 bits (76), Expect = 0.10
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDN 93
++ + G P GKS +A L ++ D + +S
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH----SDDLWGYIKHGRIDPWLPQSHQ 63
Query: 94 EYALSIR--DQIALQALEDLDDWIIKGGHFPQLGDYRRRHA 132
+ + ++ +A + ++ I+ G P A
Sbjct: 64 QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALA 104
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.8 bits (71), Expect = 0.47
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
P + + G GK+ + + N+ + + +R +H + + +
Sbjct: 32 PIAILLGGQSGAGKTTIHRIK---QKEFQGNIVIIDGDSFRSQHPHY----LELQQEYGK 84
Query: 95 YALSIRDQIALQALEDLDDWIIKGGH 120
++ A + +E L + G+
Sbjct: 85 DSVEYTKDFAGKMVESLVTKLSSLGY 110
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 30.5 bits (70), Expect = 0.96
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P+ E V+ RL ++I + K ++I +H LR L+ +
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGK-TVMIAAHGNSLRGLVKH 191
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 30.6 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC KD + R+ + I I +K +++ +H LR L+ +
Sbjct: 157 PFTECLKDTVERVLPFWFDHIAPDILANK-KVMVAAHGNSLRGLVKH 202
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 30.6 bits (70), Expect = 1.1
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P E + R+ E I+ +++ + ++I +H LR L+ Y
Sbjct: 148 PLTESLALTIDRVIPYWNETILPRMKSGE-RVIIAAHGNSLRALVKY 193
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 30.1 bits (69), Expect = 1.2
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P GE KD R+ I+ I + +LI +H LR L+
Sbjct: 128 PNGESLKDTAERVLPYYKSTIVPHILKGE-KVLIAAHGNSLRALIMD 173
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 30.2 bits (69), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC KD + R+ E I ++ K +LI +H LR L+ Y
Sbjct: 155 PLTECLKDTVARVLPLWNESIAPAVKAGK-QVLIAAHGNSLRALIKY 200
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.1 bits (67), Expect = 1.2
Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 28/184 (15%)
Query: 38 VAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRR-------------------H 78
V + G P GK+ + K L+ G+ V F + R+
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 79 ASISSATHDFFRSDNEYALSIR--DQIALQALEDLDDWIIKGGHF---PQLGDYRRRHAS 133
+ +Y + + +Q+AL L + D G ++G
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 134 GSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHK 193
+A + L + L +++ I V F+ T RN +
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLALVEE-IRNRKDVKVFNVTKEN---RNHLLPD 179
Query: 194 IVEE 197
IV
Sbjct: 180 IVTC 183
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC KD + R+ ++I I K ++L+ +H LR LL
Sbjct: 166 PTTECLKDTVERVKPYFEDVIAPSIMSGK-SVLVSAHGNSLRALLYL 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 30.6 bits (70), Expect = 1.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75
P ++ MVG+ GK+ KL RY + G V + +R
Sbjct: 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 30.2 bits (69), Expect = 1.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 391 HCAQYIDTR-ADKFYNRWPQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLR 444
+ D R AD ++ P E KD + R E I+ +I+ K +LI +H LR
Sbjct: 133 YSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGK-RVLIAAHGNSLR 191
Query: 445 CLLGY 449
++ +
Sbjct: 192 GIVKH 196
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 30.2 bits (69), Expect = 1.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P+ E KDVL RL E I ++ K +LI +H R LL +
Sbjct: 153 PRSESLKDVLERLLPYWNERIAPEVLRGK-TILISAHGNSSRALLKH 198
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 28.1 bits (63), Expect = 1.4
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 136 RATHDFFRSDNEYALSIR--DQIALQALEDLDDW----IIKGGQVAFF 177
+ N+ LS D I L E+ D W +F
Sbjct: 10 KTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWF 57
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 32/88 (36%)
Query: 90 RSDNEYALSIRD--------QIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDF 141
R + L D + +A +DL++W +R+ +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEW------------NQRQSEQVEKN---- 134
Query: 142 FRSDNEYALSIRDQIALQALEDLDDWII 169
+ +N I D+ + D II
Sbjct: 135 -KINNR----IADK---AFYQQPDADII 154
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 30.2 bits (69), Expect = 1.5
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC KD + R+ + I ++ K +++ +H LR L+ Y
Sbjct: 173 PSTECLKDTVARVIPYWTDEIAKEVLEGK-KVIVAAHGNSLRALVKY 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDY 74
Q+VA+ G P GKS ++ L L GL + + +
Sbjct: 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 29.8 bits (68), Expect = 2.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL 68
P V+ +VG+ GK+ A KL + + G V L
Sbjct: 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 29.8 bits (68), Expect = 2.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC DV+ R ++I+ + K +LIV+H LR L+ +
Sbjct: 148 PLTECLADVVARFLPYFTDVIVGDLRVGK-TVLIVAHGNSLRALVKH 193
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 29.9 bits (68), Expect = 2.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 408 PQGECYKDVLTRL-----ELIILKIEHSKSNLLIVSHPAVLRCLLGY 449
P EC DV+TR ++I+ + + +LIV+H LR L+ +
Sbjct: 171 PLTECLADVVTRFLPYFTDVIVPDLRTGR-TVLIVAHGNSLRALVKH 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 29.9 bits (68), Expect = 2.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
V+ VGL GK+ +KL Y +
Sbjct: 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL 68
V+ +VG+ GK+ A KL RY++ GL L
Sbjct: 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 28.7 bits (63), Expect = 3.1
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 31 RTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFN----------LGDYRRRHAS 80
+T+ P ++A GK+ + KL L G+ L G
Sbjct: 3 KTMIP-LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRK 61
Query: 81 ISSATHDFFRSDNEYALSIR 100
+ A S +AL
Sbjct: 62 -AGAAQTIVASQQRWALMTE 80
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 29.0 bits (66), Expect = 3.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 17/45 (37%)
Query: 296 PRTVYLTRPGESINNV------------QAILGGDSDLT-AGGQE 327
P V G ++N + +AI G+ + G E
Sbjct: 77 PVEV----AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVE 117
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 28.6 bits (65), Expect = 4.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
+ +VGL GK+ A KL Y +
Sbjct: 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.4 bits (63), Expect = 4.4
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEY 95
++ + G GKS +L L+ + GD + + SD
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM--VVGGYRPPWESDELL 55
Query: 96 ALSIRDQIALQALEDLD-------DWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNE 147
AL I + L D+I L + ++ E
Sbjct: 56 AL-TWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNRE 113
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 28.3 bits (63), Expect = 4.9
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 35/151 (23%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
V+ + G+P GKS + L+ G V + D R+ SI + + ++A
Sbjct: 3 VILITGMPGSGKSE----FAKLLKERGAKV--IVMSDVVRKRYSIEAKPGERLM---DFA 53
Query: 97 LSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQI 156
+R+ D + + L ++ D RS E
Sbjct: 54 KRLRE-------IYGDGVVAR------LCVEELGTSNHDLVVFDGVRSLAEV-------- 92
Query: 157 ALQALEDLDDWIIKGGQVAFFDATNSTQARR 187
E+ + + + + +R
Sbjct: 93 -----EEFKRLLGDSVYIVAVHSPPKIRYKR 118
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 28.6 bits (65), Expect = 5.0
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 13/37 (35%)
Query: 304 PGESINNV------------QAILGGDSDLT-AGGQE 327
P ++N + Q+I G++D+ AGG E
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTE 119
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A
{Pseudomonas aeruginosa}
Length = 209
Score = 28.4 bits (63), Expect = 5.1
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 14/101 (13%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
+AM G A G Y +L L V IS A ++ + A
Sbjct: 8 TLAMTG--ASGAQY-GLRLLDCLVQEEREVHFL-----------ISKAAQLVMATETDVA 53
Query: 97 LSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRA 137
L + Q L + D+ ASGS A
Sbjct: 54 LPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSA 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.8 bits (61), Expect = 5.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYL--RWLGLNVRLF 69
T +++ + G + GKS + L L WL V
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 28.7 bits (65), Expect = 5.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
P ++ +VG+ GK+ A KL + +
Sbjct: 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 28.7 bits (64), Expect = 5.7
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)
Query: 24 SKMAFYQRTVTPQVVAMVGLP-ARGKSYMATKL-CRYLRWLGLNVRLFNLGDYRRRHASI 81
S + + + V+++G P A G+ +L C LR LGL+ + LG +I
Sbjct: 12 SGLVPRGSHMASKNVSIIGSPLAAGQPLGGVQLACDDLRKLGLHNVIDVLGWKYEDIGNI 71
Query: 82 SSATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGHFP-----QLGDYRRRHASGSR 136
+ ++ + + D ++ + P + +
Sbjct: 72 DNGDNEMKQEKKTNNYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNGY 131
Query: 137 ATHDFFRSDNEY 148
H+F+ + E
Sbjct: 132 VNHNFYGNYEEN 143
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.1 bits (63), Expect = 6.0
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFF 89
+T V+ + GL GK+ +A +L + LR G++V +F++ D+ A ++ +
Sbjct: 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 90 RSDNEYALSIRDQIALQALEDL 111
+ + + Q L
Sbjct: 77 FEYYYLQWDV-EWLTHQLFRQL 97
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 28.6 bits (65), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
P VV M GL GK+ KL ++LR
Sbjct: 100 PAVVLMAGLQGAGKTTSVGKLGKFLR 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.4 bits (62), Expect = 6.0
Identities = 9/85 (10%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 27 AFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATH 86
+ +P + G P GK+ + + + NV + + ++++H +
Sbjct: 25 QGKKAVESPTAFLLGGQPGSGKTSLRSAI---FEETQGNVIVIDNDTFKQQHPNFDELVK 81
Query: 87 DFFRSDNEYALSIRDQIALQALEDL 111
+ + ++ +++ + L
Sbjct: 82 LYEKDVVKHVTPYSNRMTEAIISRL 106
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 28.2 bits (64), Expect = 6.2
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 13/37 (35%)
Query: 304 PGESINNV------------QAILGGDSDLT-AGGQE 327
P +IN V Q I GD+D+ GG E
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAE 121
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 28.3 bits (64), Expect = 6.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLR 60
+ +VGL GK+ A KL Y +
Sbjct: 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 27.3 bits (61), Expect = 7.4
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 312 QAILGGDSD----LTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQT---VAQCPGS 364
A L SD LT G + S+ +++++ + + R+ S A+QT V C
Sbjct: 10 DAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGDCLNL 69
Query: 365 HKEYKALDDI 374
+ L ++
Sbjct: 70 PSSAEVLPEL 79
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
protein, transport protein; 1.04A {Streptococcus
pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Length = 401
Score = 28.2 bits (63), Expect = 8.0
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 112 DDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQIALQALEDLDDWIIKG 171
D W + G+ G + + + R A+ + D I ++ +D I G
Sbjct: 173 DAWTL-NGYNQLAFATA---TGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRING 228
Query: 172 GQVAFFDATNSTQAR 186
+ ++ T
Sbjct: 229 SKQKNWEGAGYTDVI 243
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 8.4
Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 23/104 (22%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLF------------NLGD-YRRRHASISS 83
V +VG GK+ + K G V D R A
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERA---G 62
Query: 84 ATHDFFRSDNEYALSIR-------DQIALQALEDLDDWIIKGGH 120
A D L +R D +AL A LD +++G
Sbjct: 63 AVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYK 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,107,757
Number of extensions: 497997
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 75
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.2 bits)