RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy673
(512 letters)
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 131 bits (329), Expect = 4e-36
Identities = 98/266 (36%), Positives = 139/266 (52%), Gaps = 57/266 (21%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
P ++ MVGLPARGK+Y++ KL RYL ++G+ R FN+G Y RR + + +FF DNE
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY-RRDMVKTYKSFEFFLPDNE 60
Query: 95 YALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRD 154
L IR Q AL AL D+ ++
Sbjct: 61 EGLKIRKQCALAALNDVRKFL--------------------------------------- 81
Query: 155 QIALQALEDLDDWIIKGGQVAFFDATNSTQARRNTIHHKIVEERQYMLFFVESLCDDPDI 214
+GG VA FDATN+T+ RR + E+ Y FFVES+C DP++
Sbjct: 82 -------------SEEGGHVAVFDATNTTRERRA-MIFNFGEQNGYKTFFVESICVDPEV 127
Query: 215 LDRNIKEVKLTGPDYQGFEPDKAYEDFMYRIGHYEKQYQTLTEDH---LSYMQIYNVGKR 271
+ NI +VKL PDY + D+A EDFM RI YE Y++L E+ LSY++I +VG+
Sbjct: 128 IAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQS 187
Query: 272 IVVHNETGPVQKRIVRFLMHLNITPR 297
VV+ +Q RIV +LM++++TPR
Sbjct: 188 YVVNRVADHIQSRIVYYLMNIHVTPR 213
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 91.9 bits (227), Expect = 7e-22
Identities = 67/197 (34%), Positives = 114/197 (57%), Gaps = 19/197 (9%)
Query: 299 VYLTRPGESINNVQAILGGDSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQTV 358
+YL R GES N++ +GGD L+ G+E+SK L+ F+S++N+ DL+++TS + QT
Sbjct: 2 IYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTA 61
Query: 359 AQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDVLT 418
++++K L++I AG+CE TY EI ++ ++ DK+ R+P+GE Y+D++
Sbjct: 62 EALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQ 121
Query: 419 RLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRFAYKVRKKTHFLLSSRNMTLE 478
RLE +I+++E + N+L++ H AV+RCLL YF ++ + Y
Sbjct: 122 RLEPVIMELERQE-NVLVICHQAVMRCLLAYFLDKAAEELPY------------------ 162
Query: 479 LIFPHHSTGTLRPQPFG 495
L P H+ L P +G
Sbjct: 163 LKCPLHTVLKLTPVAYG 179
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 71.9 bits (175), Expect = 5e-15
Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 13/183 (7%)
Query: 290 MHLNITPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNL------ 341
M P + LTR GES N + G D L+ G + +K + + +
Sbjct: 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAF 60
Query: 342 -SDLRIWTSSKEAAKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRA 400
S L+ + + + V + + + L++ + G +G + A+ +
Sbjct: 61 TSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWR 120
Query: 401 DKFYNRWPQGECYKD----VLTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPD 456
+ P GE KD VL + I+ +LI +H LR L+ + D
Sbjct: 121 RSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGD 180
Query: 457 RFA 459
+
Sbjct: 181 QIV 183
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 62.3 bits (150), Expect = 1e-11
Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 38/203 (18%)
Query: 295 TPRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKE 352
T T+ L R GES N + G D L+ G+E + ++ EKN ++TS +
Sbjct: 2 TTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLK 61
Query: 353 AAKQTVA-------QCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTR------ 399
A T + L++ H G +G +E + + +
Sbjct: 62 RAICTAWNVLKTADLLHVPVVKTWRLNERHYGSLQGLNKSETAKKYGEEQVKIWRRSYDI 121
Query: 400 -------------------ADKFYNRWPQGECYKDVLTRL----ELIILKIEHSKSNLLI 436
+ + P EC KD + R+ I + +++
Sbjct: 122 PPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMV 181
Query: 437 VSHPAVLRCLLGYFQEEPPDRFA 459
+H LR L+ +
Sbjct: 182 AAHGNSLRGLVKHLDNLSEADVL 204
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 60.5 bits (145), Expect = 3e-11
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 6/167 (3%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVS--EKNLSDLRIWTSSKEA 353
T+YLTR GE+ NV+ + G DS LT G++ + L + E + E
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 354 AKQTVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECY 413
A+ + + L +IH G EG+T+ EI + +GE +
Sbjct: 63 AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERF 122
Query: 414 KDVLTRLE--LIILKIEHSKSNLLIVSHPAVLRCLLGYFQEEPPDRF 458
DV R + + H +LIV+H VL+ L+ F++ P D
Sbjct: 123 CDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHL 169
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 59.1 bits (142), Expect = 2e-10
Identities = 39/199 (19%), Positives = 60/199 (30%), Gaps = 38/199 (19%)
Query: 298 TVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAK 355
+ L R GES N + G D DL+ G +K + E+ S +TS + A
Sbjct: 4 KLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAI 63
Query: 356 QTVAQCPGSHKEYK-------ALDDIHAGICEGQTYTEI-----------------YTNH 391
T+ + L++ H G +G E T
Sbjct: 64 HTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPP 123
Query: 392 CAQYIDTRADKFYNRW--------PQGECYKDVLTRLE----LIILKIEHSKSNLLIVSH 439
D R R+ P E + R+ IL S ++I +H
Sbjct: 124 ELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAH 183
Query: 440 PAVLRCLLGYFQEEPPDRF 458
LR L+ Y +
Sbjct: 184 GNSLRALVKYLDNMSEEEI 202
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 53.1 bits (126), Expect = 2e-08
Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 36/200 (18%)
Query: 297 RTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAA 354
++ L R GES N + G D LT GQ + + ++E +L ++TS A
Sbjct: 4 GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRA 63
Query: 355 KQTVAQCPGSHK-------EYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRW 407
T S L++ H G +G E + + +
Sbjct: 64 ITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPP 123
Query: 408 -----------------------PQGECYKDV----LTRLELIILKIEHSKSNLLIVSHP 440
P EC DV L +I+ +LIV+H
Sbjct: 124 PPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHG 183
Query: 441 AVLRCLLGYFQEEPPDRFAY 460
LR L+ + + D
Sbjct: 184 NSLRALVKHLDQMSDDEIVG 203
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 48.1 bits (113), Expect = 8e-07
Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 39/201 (19%)
Query: 296 PRTVYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEA 353
P+ + L R G+S N + + G D L+A GQ+ + + + EK + ++TS
Sbjct: 1 PK-LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSR 59
Query: 354 AKQTVAQCPGSHKEYKALDDIHAGICE------------------------GQTYTEIYT 389
A QT + + E +
Sbjct: 60 AIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVP 119
Query: 390 NHCAQYIDTRADKFYNRW--------PQGECYKDVLTRLELIILKIEH----SKSNLLIV 437
+ K R+ P+ E V+ RL + S ++I
Sbjct: 120 PPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIA 179
Query: 438 SHPAVLRCLLGYFQEEPPDRF 458
+H LR L+ + +
Sbjct: 180 AHGNSLRGLVKHLEGISDADI 200
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 48.1 bits (113), Expect = 9e-07
Identities = 30/202 (14%), Positives = 52/202 (25%), Gaps = 42/202 (20%)
Query: 299 VYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
+ + R GE N + D L + G E ++ + N ++TS +
Sbjct: 4 LIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIH 63
Query: 357 TVAQCPGSHKEYK-------ALDDIHAGICEGQTYT------------------------ 385
T + L++ H G G
Sbjct: 64 TAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPP 123
Query: 386 -----EIYTNHCAQYIDTRADKFYNRWPQGECYKD----VLTRLELIILKIEHSKSNLLI 436
Y D ++ P+ E KD +L I +LI
Sbjct: 124 IEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILI 183
Query: 437 VSHPAVLRCLLGYFQEEPPDRF 458
+H R LL + + +
Sbjct: 184 SAHGNSSRALLKHLEGISDEDI 205
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 43.5 bits (101), Expect = 2e-05
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHD-------FF 89
+ + G+P GKS + K+ L G+N ++ N GD+ A D
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 90 RSDNEYALSIRDQIALQALEDLDDWIIKGGH 120
+ + IA +A + ++ H
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTH 93
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 43.1 bits (100), Expect = 2e-05
Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 299 VYLTRPGESINNVQAILGG--DSDLTAGGQEYSKCLSDFVSEKNLSDLRIWTSSKEAAKQ 356
++L R GE++ N + L G D LTA G+ ++ L + ++S A++
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLP-----AFSSDLLRARR 57
Query: 357 TVAQCPGSHKEYKALDDIHAGICEGQTYTEIYTNHCAQYIDTRADKFYNRWPQGECYKDV 416
T S + Y L +IH G EG + + + + + + V
Sbjct: 58 TAELAGFSPRLYPELREIHFGALEGALWETLDPRYKEALLRFQGFHPPGGESLSAFQERV 117
Query: 417 LTRLELIILKIEHSKSNLLIVSHPAVLRCLLGYFQEE 453
LE + + ++ +H V+R +L E+
Sbjct: 118 FRFLEGLK-------APAVLFTHGGVVRAVLRALGED 147
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 43.0 bits (100), Expect = 3e-05
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHA 79
+VV + G+P G + + LR G+N ++ + G A
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA 45
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 42.0 bits (98), Expect = 5e-05
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDN 93
P V+ MVG+ GK+ KL R G +V L + R A++ R++
Sbjct: 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF--RAAAVEQLQVWGQRNNI 65
Query: 94 EYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHA 132
+ + D + D R
Sbjct: 66 PVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ 104
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 38.9 bits (90), Expect = 6e-04
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 7/85 (8%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR-------RRHASISSATHD 87
+VV +VG+ GK+ KL RY + LG V +R S
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI 65
Query: 88 FFRSDNEYALSIRDQIALQALEDLD 112
+ A D + D
Sbjct: 66 QGPEGTDPAALAYDAVQAMKARGYD 90
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 37.4 bits (86), Expect = 0.002
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 32 TVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR------RRHASISSAT 85
P V+ +VG+ GK+ KL + G +V L +R +
Sbjct: 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA 67
Query: 86 HDFFRSDNEYALSIRDQIALQALEDLDDWII 116
S+ ++ AL D +I
Sbjct: 68 TVISHSEGADPAAVAFDAVAHALARNKDVVI 98
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 35.6 bits (81), Expect = 0.006
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRW 61
P+VV VG P GKS + +
Sbjct: 14 PEVVVAVGFPGAGKSTFIQEHLVSAGY 40
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.007
Identities = 18/104 (17%), Positives = 35/104 (33%)
Query: 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEY 95
+ V + G P GK+ + K L+ G+ V F + R+ I +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 96 ALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATH 139
+ + + + +++ F QL R+A S
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPG 105
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.3 bits (80), Expect = 0.007
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 6/108 (5%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
++ + G P GKS +A L ++ D + +S +
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFH----SDDLWGYIKHGRIDPWLPQSHQQ 59
Query: 95 YALSI--RDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHD 140
+ + +A + ++ I+ G P A
Sbjct: 60 NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVL 107
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 35.5 bits (81), Expect = 0.008
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYR 75
P V+ +VG+ GK+ A KL + + G V L YR
Sbjct: 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR 52
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 35.5 bits (81), Expect = 0.009
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
+ +VGL GK+ A KL Y + G L R A+ +
Sbjct: 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ--RPAAREQLRLLGEKVGVP 67
Query: 95 YALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRH 131
+ + +++ L D R
Sbjct: 68 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRL 104
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 34.2 bits (77), Expect = 0.016
Identities = 14/143 (9%), Positives = 27/143 (18%), Gaps = 10/143 (6%)
Query: 34 TPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRL---------FNLGDYRRRHASISSA 84
T +++ + G + GKS + L L L +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 85 THDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRS 144
+ + A I R R G
Sbjct: 62 VSIGPEFRALEGA-WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120
Query: 145 DNEYALSIRDQIALQALEDLDDW 167
+ R+ + +
Sbjct: 121 CDGAVAEGRETARGDRVAGMAAK 143
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 33.8 bits (76), Expect = 0.041
Identities = 9/106 (8%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 26 MAFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSAT 85
+ + +P + G P GK+ + + + + + + + ++++H +
Sbjct: 23 IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI---DNDTFKQQH---PNFD 76
Query: 86 HDFFRSDNEYALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRH 131
+ + + + +G + G R
Sbjct: 77 ELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 122
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 32.3 bits (72), Expect = 0.072
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 3/135 (2%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEYA 96
++A GK+ + KL L G+ L + +++ ++
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 97 LSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYALSIRDQI 156
+ Q E D+ + D + F + + RD
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG---FKHEEIAKIVLFRDGA 120
Query: 157 ALQALEDLDDWIIKG 171
+ E + D +
Sbjct: 121 GHRPEELVIDRHVIA 135
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 31.9 bits (71), Expect = 0.092
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
+ ++G+ GKS +A+++ L L+ R A+ + D+
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD-----FLHPRRNIEKMASGEPLNDDDR 60
Query: 95 YALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEYAL 150
A A++ + + + + + + D +
Sbjct: 61 KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIE 116
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/59 (23%), Positives = 17/59 (28%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEY 95
+ + G GK +A L L G LGD R S R N
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQ 66
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 31.4 bits (70), Expect = 0.24
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 17/107 (15%)
Query: 27 AFYQRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNV-----------------RLF 69
A +T V + G+P GKS L L G V
Sbjct: 43 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 102
Query: 70 NLGDYRRRHASISSATHDFFRSDNEYALSIRDQIALQALEDLDDWII 116
+ + A R+ + L D ++
Sbjct: 103 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILV 149
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.7 bits (65), Expect = 0.41
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 6/114 (5%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
+++ +G P GKS A + N DYR+ ++ D ++ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIA----KNPGFYNINRDDYRQSI--MAHEERDEYKYTKK 55
Query: 95 YALSIRDQIALQALEDLDDWIIKGGHFPQLGDYRRRHASGSRATHDFFRSDNEY 148
+ A L G + + E+
Sbjct: 56 KEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEH 109
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.75
Identities = 13/81 (16%), Positives = 27/81 (33%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNE 94
V + GL GK+ ++ L YL G+ + + R+ + + +
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR 78
Query: 95 YALSIRDQIALQALEDLDDWI 115
+ A L + +I
Sbjct: 79 RIAEVAKLFADAGLVCITSFI 99
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 29.0 bits (64), Expect = 1.0
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDN 93
+ + GL A GKS +A +L L GD R + + R++N
Sbjct: 24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN 82
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 28.1 bits (61), Expect = 2.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 47 GKSYMATKLCRYLRWLGLNVRLF 69
GK+ + L + + G +
Sbjct: 14 GKTVASCALLQAAKAAGYRTAGY 36
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.8 bits (60), Expect = 2.6
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 30 QRTVTPQVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFF 89
+T V+ + GL GK+ +A +L + LR G++V +F++ D+ A ++ +
Sbjct: 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEW 76
Query: 90 RSDNEYALSIRDQI 103
+
Sbjct: 77 FEYYYLQWDVEWLT 90
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 5/87 (5%)
Query: 36 QVVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRHASISSATHDFFRSDNEY 95
++ + G GKS +L L + GD
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDN-----SAYIEGDIINHMVVGGYRPPWESDELLAL 57
Query: 96 ALSIRDQIALQALEDLDDWIIKGGHFP 122
+ + L +D ++ FP
Sbjct: 58 TWKNITDLTVNFLLAQNDVVLDYIAFP 84
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 26.4 bits (58), Expect = 4.0
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 257 EDHLSYMQIYNVGKRIVVHNETGPVQKRIVRFLMHLNITPRTVYLTRPGESINNVQAILG 316
+ + +VG R V +++ V ++ + P R E +
Sbjct: 24 SEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPL-------- 75
Query: 317 GDSDLTAGGQEYSKC 331
G +D + G+ Y +C
Sbjct: 76 GKNDGSVNGKRYFEC 90
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 263
Score = 27.2 bits (60), Expect = 4.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 382 QTYTEIYTNHCAQYIDTRADKFYNRW 407
+ YT Y+N+C T R
Sbjct: 213 RNYTRDYSNYCINTYQTAFRGLNTRL 238
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.5 bits (57), Expect = 6.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 35 PQVVAMVGLPARGKSYMATKLCRYLRWLGLNV 66
P VV ++G P GK + R W+ L+
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 37 VVAMVGLPARGKSYMATKLCRYLRWLGLNVRLFNLGDYRRRH 78
VVA+VGL GKSY+ KL + F+LG + H
Sbjct: 34 VVAIVGLYRTGKSYLMNKLAGKKKG-------FSLGSTVQSH 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,971,552
Number of extensions: 94398
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 45
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)