Query psy6731
Match_columns 258
No_of_seqs 196 out of 644
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2778|consensus 100.0 6E-81 1.3E-85 565.3 15.4 243 5-250 1-316 (328)
2 PF01088 Peptidase_C12: Ubiqui 100.0 6.8E-56 1.5E-60 392.6 8.6 161 6-166 1-180 (214)
3 KOG1415|consensus 100.0 5.6E-49 1.2E-53 342.4 10.9 162 5-166 3-174 (222)
4 KOG0581|consensus 37.4 47 0.001 32.4 4.2 48 90-137 288-340 (364)
5 KOG2778|consensus 29.0 22 0.00049 33.7 0.6 18 149-166 157-174 (328)
6 KOG2804|consensus 23.8 3.1E+02 0.0068 26.5 7.1 121 106-252 163-293 (348)
7 PF04705 TSNR_N: Thiostrepton- 21.2 72 0.0016 25.9 2.0 29 8-40 31-59 (115)
8 KOG3926|consensus 19.8 91 0.002 29.6 2.7 20 214-236 91-110 (332)
9 TIGR02260 benz_CoA_red_B benzo 18.5 6.8E+02 0.015 24.5 8.6 56 163-226 157-214 (413)
10 PF09921 DUF2153: Uncharacteri 16.6 1.1E+02 0.0024 25.5 2.2 27 226-252 93-119 (126)
No 1
>KOG2778|consensus
Probab=100.00 E-value=6e-81 Score=565.34 Aligned_cols=243 Identities=55% Similarity=0.898 Sum_probs=222.1
Q ss_pred CCcccccCCHHHHHHHHHhcCCCcceEEEeccCChhhhhhcCCcceEEeeeeccCCCCcCCCCccCCccccccchhhhcc
Q psy6731 5 GNWCLIESDPGVFTELIRGFGVQGVQVEELWSLEPENLKILQPVHGLIFLFKLREDTEPAGSIVQDSRLETIFFAKQVVN 84 (258)
Q Consensus 5 ~~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD~~~L~~l~PV~glIfLFp~~~~~~~~~~~~~d~~~~~vfFakQtI~ 84 (258)
++||+|||||||||+|+++|||+|+||+||||||.+.+..++||||+||||+|.++.++.+....|. .++||||+|||+
T Consensus 1 ~~W~~iESDPGvFTeli~~fgv~gvQVEElysLd~~~~~~~~piyGlIFLFKW~~ed~~~g~v~~D~-~~niFFA~QvIn 79 (328)
T KOG2778|consen 1 MSWCLIESDPGVFTELIEGFGVKGVQVEELYSLDSDSLRPLRPIYGLIFLFKWIEEDKPAGSVIDDS-VSNIFFAKQVIN 79 (328)
T ss_pred CCceeeccCCcHHHHHHHhcCCCceeEeeeeccCcchhccCCCceeEEEEEEeccCCCCCccccccc-ccchhhhhhhcc
Confidence 3799999999999999999999999999999999999999999999999999999888878777665 578999999999
Q ss_pred chhHHHHHHHHhcCCCCCCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhcc--------------------
Q psy6731 85 NACATQAILSILLNNSDPEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR-------------------- 144 (258)
Q Consensus 85 NACgT~AlLh~L~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~-------------------- 144 (258)
|||||||||++|+|+.+.+|++|++|++||+||++|+|+.||++|+|+++||.+||||||
T Consensus 80 NACATqAlLsvLlN~~~~~idLG~tLs~~K~f~k~f~Pe~KGlal~Nse~Ir~~HNSfARp~~~~~~e~~a~~~~~~dd~ 159 (328)
T KOG2778|consen 80 NACATQALLSVLLNCSHEDIDLGPTLSELKEFTKGFDPELKGLALGNSEEIRCAHNSFARPEPFRPEEVDAATSAKEDDV 159 (328)
T ss_pred cHHHHHHHHHHHHcCCccccchhhHHHHHHHHhhcCChhhcccccCCcHHHHHHhccccCCCCcchhhhhcccccccccc
Confidence 999999999999999888999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------cCCcCcceEEEEEEecCh----hhHHHHHHH
Q psy6731 145 -------------------------------------------------YSSEEIRFNLLAVVCDKK----MKYEKELAA 171 (258)
Q Consensus 145 -------------------------------------------------~~~~ei~fh~~A~V~d~~----~~~E~~l~~ 171 (258)
|+++||||||||+|+|++ +.|+++++.
T Consensus 160 yHFVsyvPI~g~lyELDGLke~PI~lg~~~~eqeW~d~vrpVIqeRi~~ys~gEIrFNLMAvV~dRk~a~l~~~~~~~e~ 239 (328)
T KOG2778|consen 160 YHFVSYVPINGRLYELDGLKEGPIDLGPCEKEQEWLDKVRPVIQERIQRYSEGEIRFNLMAVVPDRKTAELKELQRKREI 239 (328)
T ss_pred eeEEEEEeeCCEEEeccCCccCCcccCCCCccHhHHHHHHHHHHHHHhhCCcceeEEEEEEEeccchHHHHHHHHHHHHH
Confidence 888999999999999999 888888887
Q ss_pred HHHhhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccCchHHHHHHHHHHHHcCcchHHHHHHHHhhh
Q psy6731 172 ATQALKDPSLDAATKTAKQNEVVQLKILIEEEAAKLESYRIENIRRKHNYLPLIMNLLKLLAKQGQLVNLYQKAVELNS 250 (258)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~E~~kr~~~~~En~rR~hny~pfi~~llk~la~~g~l~~~~~~a~~~~~ 250 (258)
|...+..+ .+... ...+++|+.+...|..|.+|+++|++||+||||||+|||++|+|.||++|+|.+++++||++..
T Consensus 240 l~~~l~~~-~~~~~-~~~q~~ia~~~~~i~~e~~K~~~~k~en~rr~hny~pfl~ellk~lae~~~L~~~~~kak~~~~ 316 (328)
T KOG2778|consen 240 LLQQLQKQ-EATEA-DKEQSEIANLSSHIRPEDEKLKRYKKENIRRKHNYLPFLVELLKILAEEGQLAPLVEKAKPKSM 316 (328)
T ss_pred HHHHHHhh-hccch-hhhhhhhcccccccCcchhHhhhcchhhhhhhhcccHHHHHHHHHHhhhcchhhhhhhhcchhh
Confidence 76544320 01111 1257888999999999999999999999999999999999999999999999999999997776
No 2
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=100.00 E-value=6.8e-56 Score=392.56 Aligned_cols=161 Identities=44% Similarity=0.729 Sum_probs=137.2
Q ss_pred CcccccCCHHHHHHHHHhcCCCcceEEEeccCCh-hhhhhc-CCcceEEeeeeccCCCCcC-------CCCccCCccccc
Q psy6731 6 NWCLIESDPGVFTELIRGFGVQGVQVEELWSLEP-ENLKIL-QPVHGLIFLFKLREDTEPA-------GSIVQDSRLETI 76 (258)
Q Consensus 6 ~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD~-~~L~~l-~PV~glIfLFp~~~~~~~~-------~~~~~d~~~~~v 76 (258)
+|+||||||+|||+|+++|||++++|+||||||+ ++|+++ +|||||||||||++..+.. .....+..+++|
T Consensus 1 ~w~pLESnP~vfn~l~~~lGv~~~~f~Dv~sld~~~lL~~ip~Pv~alI~lfp~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (214)
T PF01088_consen 1 GWIPLESNPEVFNELLRKLGVSGVQFEDVYSLDDPELLAMIPRPVYALIFLFPWTEEYEERRAEEDAKIEEKGQDIPENV 80 (214)
T ss_dssp BS--EESSHHHHHHHHHHTTBTSEEEEEESTSSHHHHHTTSSSSEEEEEEEEE--HHHHHHHHHHHHHHCCHSCTCGTTS
T ss_pred CcccccCCHHHHHHHHHHcCCceeEEEEcccccchHhhhhcCccceeEEEEEecchhhhhhhccccccccccccCCCCCc
Confidence 5999999999999999999999999999999998 679999 9999999999999753321 011122335689
Q ss_pred cchhhhccchhHHHHHHHHhcCCCC-CCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhcc-----c----C
Q psy6731 77 FFAKQVVNNACATQAILSILLNNSD-PEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR-----Y----S 146 (258)
Q Consensus 77 fFakQtI~NACgT~AlLh~L~N~~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~-----~----~ 146 (258)
||+||||+|||||+||||+|+|+++ ..|.+||.|++|+++|.+|+|++||.+|++++.|+++||++|+ . .
T Consensus 81 ~f~kQti~NACgt~AlLh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~~~l~~aH~s~A~~g~t~~~~~~~ 160 (214)
T PF01088_consen 81 FFAKQTIGNACGTIALLHALLNNPDRIEIEPGSILDQFKEFTKDLSPEERGKALENSKELRKAHNSFARQGQTEAPDDEA 160 (214)
T ss_dssp -EES-SSBTGHHHHHHHHHHHTCCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTHHHHHHHHHHHHCHCSSTS-H--T
T ss_pred eEeeecCCchhhHHHHHHHHhcccccccccCCchHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcCCCcccc
Confidence 9999999999999999999999873 3589999999999999999999999999999999999999998 1 3
Q ss_pred CcCcceEEEEEEecChhhHH
Q psy6731 147 SEEIRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 147 ~~ei~fh~~A~V~d~~~~~E 166 (258)
++++.|||||||+.+|++||
T Consensus 161 ~~~~~~HFI~fV~~~G~LyE 180 (214)
T PF01088_consen 161 DDEVDFHFIAFVPVDGHLYE 180 (214)
T ss_dssp TSCGCEEEEEEEEETTEEEE
T ss_pred CCCCCccEEEEEeECCeEEE
Confidence 67899999999999999998
No 3
>KOG1415|consensus
Probab=100.00 E-value=5.6e-49 Score=342.40 Aligned_cols=162 Identities=28% Similarity=0.549 Sum_probs=145.1
Q ss_pred CCcccccCCHHHHHHHHHhcCCCc-ceEEEeccCChhhhhhc-CCcceEEeeeeccCCCCcCCC-Cc--cCCccccccch
Q psy6731 5 GNWCLIESDPGVFTELIRGFGVQG-VQVEELWSLEPENLKIL-QPVHGLIFLFKLREDTEPAGS-IV--QDSRLETIFFA 79 (258)
Q Consensus 5 ~~W~pLESdP~VFt~li~~LGv~~-~qf~DVysLD~~~L~~l-~PV~glIfLFp~~~~~~~~~~-~~--~d~~~~~vfFa 79 (258)
..|.||||||+|+|.|+++|||++ |+|.||||||++.|+++ +||+|||||||.++..+.... .. ....+++||||
T Consensus 3 ~~w~PLEsNPEv~n~~l~klGv~~~~~~~DVy~ldee~L~~vPrPv~A~lllFP~~e~~e~~~~~~~e~~k~~~~~V~fm 82 (222)
T KOG1415|consen 3 RRWTPLESNPEVLNPFLHKLGVAGEWSVVDVYGLDEESLEFVPRPVKALLLLFPITEKREEFRKEQIEEIKEQSDKVFFM 82 (222)
T ss_pred CccccccCCHHHHHHHHHHhCCCCceEEEEeeecChhhhhhcCccceEEEEEecccchhhHhhhhhHhhhhcCCCceEEE
Confidence 479999999999999999999998 99999999999999999 999999999999987654321 10 01224689999
Q ss_pred hhhccchhHHHHHHHHhcCCCC-CCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhcc----cCCcCcceEE
Q psy6731 80 KQVVNNACATQAILSILLNNSD-PEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR----YSSEEIRFNL 154 (258)
Q Consensus 80 kQtI~NACgT~AlLh~L~N~~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~----~~~~ei~fh~ 154 (258)
||||+|||||+||||+|.|+.+ ..+..||.|++|++.+.+++|++|+.+|+++++|+.+|..+|. ..++++++||
T Consensus 83 kQti~NACGTiaLlHslaN~~~r~~l~~Gs~l~~fl~~~~~~s~eeRa~~le~d~~l~~~H~a~a~eGqte~~~~vd~HF 162 (222)
T KOG1415|consen 83 KQTIGNACGTIALLHSLANNEDRVKLEDGSFLKKFLEEAEKMSPEERADLLENDEELEAAHEAAAQEGQTEADEDVDLHF 162 (222)
T ss_pred eccccchhHHHHHHHHHhccccccccCCchHHHHHHHHhhcCCHHHHHHHhcccHHHHHHHHHHHhcCCCCCccccceEE
Confidence 9999999999999999999973 4688899999999999999999999999999999999999997 3467899999
Q ss_pred EEEEecChhhHH
Q psy6731 155 LAVVCDKKMKYE 166 (258)
Q Consensus 155 ~A~V~d~~~~~E 166 (258)
||||.++|++||
T Consensus 163 I~~v~~~G~lYE 174 (222)
T KOG1415|consen 163 ICFVNKNGHLYE 174 (222)
T ss_pred EEEEccCCeEEE
Confidence 999999999998
No 4
>KOG0581|consensus
Probab=37.38 E-value=47 Score=32.38 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCCCCCCC---hhhHHHhhccCCChhhHH--hhhcCChHHHH
Q psy6731 90 QAILSILLNNSDPEVKLGS---VLTEFKDFCQSFDPTMKG--YALSNSQPIRT 137 (258)
Q Consensus 90 ~AlLh~L~N~~~~~i~~gs---~L~~f~~~t~~~~p~~Rg--~~L~ns~~i~~ 137 (258)
..+|.++.|.+.+.+..+. .+..|.+.|-..+|.+|. ..|-+.+.|+.
T Consensus 288 ~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~ 340 (364)
T KOG0581|consen 288 FELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKK 340 (364)
T ss_pred HHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhh
Confidence 4799999998755666663 366677778888999998 66778888876
No 5
>KOG2778|consensus
Probab=28.96 E-value=22 Score=33.71 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=16.0
Q ss_pred CcceEEEEEEecChhhHH
Q psy6731 149 EIRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 149 ei~fh~~A~V~d~~~~~E 166 (258)
+--||||++|+.+|.+||
T Consensus 157 dd~yHFVsyvPI~g~lyE 174 (328)
T KOG2778|consen 157 DDVYHFVSYVPINGRLYE 174 (328)
T ss_pred ccceeEEEEEeeCCEEEe
Confidence 345999999999999998
No 6
>KOG2804|consensus
Probab=23.77 E-value=3.1e+02 Score=26.46 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=71.6
Q ss_pred CCCh-hhHHHhhccCCChhhHHhhhcCChHHHHHh---hhhcc------cCCcCcceEEEEEEecChhhHHHHHHHHHHh
Q psy6731 106 LGSV-LTEFKDFCQSFDPTMKGYALSNSQPIRTVH---NSFAR------YSSEEIRFNLLAVVCDKKMKYEKELAAATQA 175 (258)
Q Consensus 106 ~gs~-L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aH---ns~A~------~~~~ei~fh~~A~V~d~~~~~E~~l~~l~~~ 175 (258)
.|+. +-.|.+...-|-|..|.+-++.|+.|..+= +.+++ |+..+.+. .|+..++..+..++.+|+..
T Consensus 163 ~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~keLnV---sfl~~kk~~~~~k~~~lk~~ 239 (348)
T KOG2804|consen 163 AGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAKELNV---SFLKEKKLRLQNKVDELKEK 239 (348)
T ss_pred CCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHHhcch---HHHHhHHHHHHHHHHHHHHH
Confidence 4542 445556667789999999999999887653 33443 55555542 34555666666677766542
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccCchHHHHHHHHHHHHcCcchHHHHHHHHhhhhh
Q psy6731 176 LKDPSLDAATKTAKQNEVVQLKILIEEEAAKLESYRIENIRRKHNYLPLIMNLLKLLAKQGQLVNLYQKAVELNSSK 252 (258)
Q Consensus 176 ~~~~~~~~~~~~~~~~e~~~~~~~l~~E~~kr~~~~~En~rR~hny~pfi~~llk~la~~g~l~~~~~~a~~~~~~~ 252 (258)
... +. ...+.. -.+-...| .|+.|+ ||-.||..+.+.|.+..+...-+.+....
T Consensus 240 vk~-----------~~--e~~~~~---~~~l~~kW-~e~s~e------~i~~fle~f~~~~~~n~~~~~~~~rl~~~ 293 (348)
T KOG2804|consen 240 VKE-----------QQ--EKVKEF---SRDLIQKW-EEKSRE------FIAGFLELFGKGGALNAFDDELKGRLLQA 293 (348)
T ss_pred HHH-----------HH--HHhhHH---HHHHHHHH-HHhHHH------HHHHHHHHhccccchhhhHhHHHHHHHhh
Confidence 110 01 111111 11112334 455544 78899999999998888877766655433
No 7
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=21.23 E-value=72 Score=25.93 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=20.3
Q ss_pred ccccCCHHHHHHHHHhcCCCcceEEEeccCChh
Q psy6731 8 CLIESDPGVFTELIRGFGVQGVQVEELWSLEPE 40 (258)
Q Consensus 8 ~pLESdP~VFt~li~~LGv~~~qf~DVysLD~~ 40 (258)
+.|--||+ .|++.+| -|++|-+||++|..
T Consensus 31 T~LIED~E---PL~~~i~-AGvefieVYg~~~~ 59 (115)
T PF04705_consen 31 TTLIEDPE---PLTHSIR-AGVEFIEVYGSDGS 59 (115)
T ss_dssp EEEEESHH---HHHHHHC-TT-EEEEEEEETTS
T ss_pred eeeecCch---HHHHHHh-cCcEEEEEeeecCC
Confidence 34555776 5667777 68999999998743
No 8
>KOG3926|consensus
Probab=19.75 E-value=91 Score=29.65 Aligned_cols=20 Identities=50% Similarity=0.751 Sum_probs=16.0
Q ss_pred HhhhccCchHHHHHHHHHHHHcC
Q psy6731 214 NIRRKHNYLPLIMNLLKLLAKQG 236 (258)
Q Consensus 214 n~rR~hny~pfi~~llk~la~~g 236 (258)
|-+||+|| |+.||..+|++|
T Consensus 91 ~D~rrFny---ickllqliak~q 110 (332)
T KOG3926|consen 91 RDRRRFNY---ICKLLQLIAKSQ 110 (332)
T ss_pred HHHHHHHH---HHHHHHHHHHcc
Confidence 44678887 789999999876
No 9
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=18.50 E-value=6.8e+02 Score=24.47 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=38.3
Q ss_pred hhHHHHHH-HHHHhhcCC-CcchhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccCchHHHH
Q psy6731 163 MKYEKELA-AATQALKDP-SLDAATKTAKQNEVVQLKILIEEEAAKLESYRIENIRRKHNYLPLIM 226 (258)
Q Consensus 163 ~~~E~~l~-~l~~~~~~~-~~~~~~~~~~~~e~~~~~~~l~~E~~kr~~~~~En~rR~hny~pfi~ 226 (258)
..|..|+. .+...++.. +..++ ...|++.|+..++.|+-|+.=+..|+|+..|+=.
T Consensus 157 ~y~~~ql~~~l~~~LE~~tG~ki~--------~e~L~~ai~~~n~~r~~~~~~~~l~~~~P~Pis~ 214 (413)
T TIGR02260 157 DFMVKQLKEDVIPKFEQISGVKFD--------IDRLREYLKKSAKAEDDHVWVLESAKHKPSPIDA 214 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCch
Confidence 45677785 766544310 00111 2467889999999999999999999999876543
No 10
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=16.61 E-value=1.1e+02 Score=25.53 Aligned_cols=27 Identities=37% Similarity=0.363 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCcchHHHHHHHHhhhhh
Q psy6731 226 MNLLKLLAKQGQLVNLYQKAVELNSSK 252 (258)
Q Consensus 226 ~~llk~la~~g~l~~~~~~a~~~~~~~ 252 (258)
.++|+-|+++|+|.|++-.-++..-++
T Consensus 93 rdll~kl~kEGkl~pll~~~~~~~~~~ 119 (126)
T PF09921_consen 93 RDLLKKLAKEGKLNPLLWLYKQQGEQK 119 (126)
T ss_pred HHHHHHHHHcCCCCHHHHhhccccCCC
Confidence 578999999999999987666444433
Done!