Query psy6731
Match_columns 258
No_of_seqs 196 out of 644
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihr_A Ubiquitin carboxyl-term 100.0 1.2E-81 4.1E-86 585.2 18.4 252 4-257 5-327 (328)
2 3rii_A Ubiquitin carboxyl-term 100.0 2E-60 6.8E-65 425.2 14.0 166 1-166 7-182 (233)
3 1xd3_A Ubiquitin carboxyl-term 100.0 2.6E-58 9E-63 410.8 9.6 165 1-166 1-182 (230)
4 2wdt_A Ubiquitin carboxyl-term 100.0 5E-58 1.7E-62 409.5 11.0 166 1-166 1-177 (232)
5 4dm9_A Ubiquitin carboxyl-term 100.0 2E-57 6.8E-62 404.7 10.3 162 5-166 6-179 (228)
6 1cmx_A Protein (ubiquitin YUH1 100.0 4.7E-57 1.6E-61 403.7 7.0 164 1-166 1-179 (235)
7 3ihr_A Ubiquitin carboxyl-term 86.7 0.14 4.8E-06 47.5 0.3 18 149-166 160-177 (328)
8 3rii_A Ubiquitin carboxyl-term 64.2 3.2 0.00011 36.4 2.4 40 122-162 190-233 (233)
9 2l82_A Designed protein OR32; 30.0 22 0.00075 28.3 1.7 36 1-38 1-36 (162)
10 4dm9_A Ubiquitin carboxyl-term 29.9 26 0.00087 30.5 2.3 16 146-161 213-228 (228)
11 2wdt_A Ubiquitin carboxyl-term 24.7 35 0.0012 29.8 2.2 17 144-161 211-227 (232)
12 1xd3_A Ubiquitin carboxyl-term 21.0 44 0.0015 29.0 2.2 14 147-160 217-230 (230)
13 3hpw_C Protein CCDA; alpha+bet 20.5 29 0.00098 21.8 0.6 12 205-216 3-14 (36)
14 1cmx_A Protein (ubiquitin YUH1 20.5 45 0.0015 29.2 2.1 19 142-160 215-234 (235)
No 1
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-81 Score=585.25 Aligned_cols=252 Identities=63% Similarity=1.002 Sum_probs=195.6
Q ss_pred CCCcccccCCHHHHHHHHHhcCCCcceEEEeccCChhhhhhcCCcceEEeeeeccCCCCcCCCCccCCccccccchhhhc
Q psy6731 4 AGNWCLIESDPGVFTELIRGFGVQGVQVEELWSLEPENLKILQPVHGLIFLFKLREDTEPAGSIVQDSRLETIFFAKQVV 83 (258)
Q Consensus 4 ~~~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD~~~L~~l~PV~glIfLFp~~~~~~~~~~~~~d~~~~~vfFakQtI 83 (258)
+++||||||||+|||+|+++|||++++|+||||||+++|++++|||||||||||++..+..+....+...++|||+||||
T Consensus 5 ~~~W~pLESnP~Vft~ll~~LGv~~~~f~DVysLD~e~L~~l~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~v~f~kQtI 84 (328)
T 3ihr_A 5 AGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVI 84 (328)
T ss_dssp --CCCCCCCCHHHHHHHHHHHTCBSEEEEECCCCCHHHHHTTCSEEEEEEEEECCSCCCCSSEECCSTTTTTSCCCCCCS
T ss_pred CCceeeecCCHHHHHHHHHHcCCCceEEEEeccCCHHHHhcccCceEEEEEEecCchhhhcccccccCcccccchHHHhc
Confidence 57899999999999999999999999999999999999999999999999999998765555444444446899999999
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhcc-------------------
Q psy6731 84 NNACATQAILSILLNNSDPEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR------------------- 144 (258)
Q Consensus 84 ~NACgT~AlLh~L~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~------------------- 144 (258)
+||||||||||+|+|+++..|++||.|++|+++|.+|+|++||.+|+|++.|+.+|||||+
T Consensus 85 ~NACGT~ALLh~l~N~~~~~I~~Gs~L~~f~~~t~~l~P~~Rg~~L~ns~~i~~aHns~A~~g~~~~dt~~~~~d~~~~H 164 (328)
T 3ihr_A 85 NNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFH 164 (328)
T ss_dssp GGGHHHHHHHHHHHTCCCTTCBCHHHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHTTC-----------------CEE
T ss_pred cchHHHHHHHHHHHcCCcccCCCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhccCCccCCCCCCCCcCccee
Confidence 9999999999999999755799999999999999999999999999999999999999997
Q ss_pred ----------------------------------------------cCCcCcceEEEEEEecChhhHHHHHHHHHHhhcC
Q psy6731 145 ----------------------------------------------YSSEEIRFNLLAVVCDKKMKYEKELAAATQALKD 178 (258)
Q Consensus 145 ----------------------------------------------~~~~ei~fh~~A~V~d~~~~~E~~l~~l~~~~~~ 178 (258)
|++++|+||+||+++|+...|+++|+.|++.+..
T Consensus 165 FIafV~~dG~LyELDG~k~gPI~hG~~~~e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d~~~~~~~~l~~l~~~~~~ 244 (328)
T 3ihr_A 165 FVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAE 244 (328)
T ss_dssp EEEEEEETTEEEEEETTSSSCEEEEECBTTBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCEEEEcCCCCCCCcccCCCCchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCChHHHHHHHHHHHHhhhhc
Confidence 2223455555555555555555555544331110
Q ss_pred CCcchhhh------hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccCchHHHHHHHHHHHHcCcchHHHHHHHHhhhhh
Q psy6731 179 PSLDAATK------TAKQNEVVQLKILIEEEAAKLESYRIENIRRKHNYLPLIMNLLKLLAKQGQLVNLYQKAVELNSSK 252 (258)
Q Consensus 179 ~~~~~~~~------~~~~~e~~~~~~~l~~E~~kr~~~~~En~rR~hny~pfi~~llk~la~~g~l~~~~~~a~~~~~~~ 252 (258)
.+|+.+ ..++.+|..+++.|++|++||++|++||+||||||+|||++|||+||++|+|.++|++||+|++++
T Consensus 245 --~~~~~~~~~~~~~~~~~ei~~~~~~l~~E~~kr~~w~~En~rRrhny~pfi~~llk~la~~~~l~~~~e~ak~~~~~~ 322 (328)
T 3ihr_A 245 --EPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAK 322 (328)
T ss_dssp --SCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSSTTTTTC-----------
T ss_pred --ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 012111 235788999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcC
Q psy6731 253 KEKVK 257 (258)
Q Consensus 253 ~~~~~ 257 (258)
.+++.
T Consensus 323 ~~~~~ 327 (328)
T 3ihr_A 323 KAQET 327 (328)
T ss_dssp -----
T ss_pred HHhhc
Confidence 77653
No 2
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=100.00 E-value=2e-60 Score=425.19 Aligned_cols=166 Identities=65% Similarity=1.036 Sum_probs=148.2
Q ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcceEEEeccCChhhhhhcCCcceEEeeeeccCCCCcCCCCccCCccccccchh
Q psy6731 1 MSDAGNWCLIESDPGVFTELIRGFGVQGVQVEELWSLEPENLKILQPVHGLIFLFKLREDTEPAGSIVQDSRLETIFFAK 80 (258)
Q Consensus 1 M~~~~~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD~~~L~~l~PV~glIfLFp~~~~~~~~~~~~~d~~~~~vfFak 80 (258)
|+++++||||||||+|||+|+++|||++++|+||||||+++|++++|||||||||||++.++..++...+...++|||+|
T Consensus 7 ~~~~~~w~pLESnP~Vft~l~~~LGv~~~~f~DVysLD~~~L~~l~Pv~alIfLFp~~~~~~~~~~~~~~~~~~~v~f~k 86 (233)
T 3rii_A 7 TGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAK 86 (233)
T ss_dssp ----CCSCCCCCCHHHHHHHHHHTTCBSEEEEECSCSSTTTTTTTCSEEEEEEEECCCTTCCCSSEECCSGGGGTSCCCC
T ss_pred cccCCCeeeecCCHHHHHHHHHHhCCCCcEEEEcccCCHHHHhhccCceEEEEEEeccchhhhccCccccCCcccceEee
Confidence 44458999999999999999999999999999999999999999999999999999998765554444444346899999
Q ss_pred hhccchhHHHHHHHHhcCCCCCCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhccc----------CCcCc
Q psy6731 81 QVVNNACATQAILSILLNNSDPEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFARY----------SSEEI 150 (258)
Q Consensus 81 QtI~NACgT~AlLh~L~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~~----------~~~ei 150 (258)
|||+||||||||||+|+|+++..|++||.|++|+++|.+|+|++||.+|+|++.|+.+|||||+. .++++
T Consensus 87 QtI~NACgT~ALLh~l~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aH~s~A~~g~~~~dt~~~~~~~~ 166 (233)
T 3rii_A 87 QVINNASATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEED 166 (233)
T ss_dssp CCCGGGHHHHHHHHHHHTCCCTTCBCCHHHHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHTSCC----------CCGGG
T ss_pred hhccccHHHHHHHHHHHcCCcccccCCcHHHHHHHHhcCCCHHHHHHHHhcCHHHHHHHHHHhhcCCccCCCCCCCccCc
Confidence 99999999999999999997557999999999999999999999999999999999999999983 24578
Q ss_pred ceEEEEEEecChhhHH
Q psy6731 151 RFNLLAVVCDKKMKYE 166 (258)
Q Consensus 151 ~fh~~A~V~d~~~~~E 166 (258)
.|||||||+.+|++||
T Consensus 167 ~~HFIafV~~dG~LyE 182 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYE 182 (233)
T ss_dssp GSEEEEEEEETTEEEE
T ss_pred ceeEEEEEEeCCeEEE
Confidence 9999999999999998
No 3
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=100.00 E-value=2.6e-58 Score=410.84 Aligned_cols=165 Identities=27% Similarity=0.501 Sum_probs=143.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCc-ceEEEeccCChhhhhhc-CCcceEEeeeeccCCCCcCCC-----C--ccCC
Q psy6731 1 MSDAGNWCLIESDPGVFTELIRGFGVQG-VQVEELWSLEPENLKIL-QPVHGLIFLFKLREDTEPAGS-----I--VQDS 71 (258)
Q Consensus 1 M~~~~~W~pLESdP~VFt~li~~LGv~~-~qf~DVysLD~~~L~~l-~PV~glIfLFp~~~~~~~~~~-----~--~~d~ 71 (258)
|+. .+||||||||+|||+|+++|||++ ++|+||||||+|+|+++ +|||||||||||++.++..+. . ....
T Consensus 1 ~~~-~~w~plESnP~Vft~l~~~lGv~~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~~~~~~~~~ 79 (230)
T 1xd3_A 1 MEG-QRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQD 79 (230)
T ss_dssp -CC-CBCCCCBCCHHHHHHHHHHTTBCTTEEEEECCCSSHHHHTTSCSCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_pred CCC-CccccccCCHHHHHHHHHHcCCCceEEEEEeccCCHHHHhhCCCCceEEEEEEECChhhhhhhhhhhcccccccCC
Confidence 765 479999999999999999999997 99999999999999999 999999999999975433211 0 0112
Q ss_pred ccccccchhhhccchhHHHHHHHHhcCCCC-CCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhcc------
Q psy6731 72 RLETIFFAKQVVNNACATQAILSILLNNSD-PEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR------ 144 (258)
Q Consensus 72 ~~~~vfFakQtI~NACgT~AlLh~L~N~~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~------ 144 (258)
.+++|||+||||+||||||||||+|+|+++ ..|..||.|++|+++|.+|+|++||.+|+|++.|+.+|||||+
T Consensus 80 ~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~ 159 (230)
T 1xd3_A 80 VTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEA 159 (230)
T ss_dssp CCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTCHHHHHHHHHHHTCSSSCC
T ss_pred CCcCcEEeehhccccHHHHHHHHHHHcCcCCcccCCCchHHHHHHHccCCCHHHHHHHhcCcHHHHHHHHHHhccCCCCC
Confidence 236799999999999999999999999873 3455699999999999999999999999999999999999998
Q ss_pred -cCCcCcceEEEEEEecChhhHH
Q psy6731 145 -YSSEEIRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 145 -~~~~ei~fh~~A~V~d~~~~~E 166 (258)
..++++.|||||||+.+|++||
T Consensus 160 p~~~~~~~~HFI~fV~~~G~LyE 182 (230)
T 1xd3_A 160 PSIDEKVDLHFIALVHVDGHLYE 182 (230)
T ss_dssp CCTTSCCCEEEEEEEEETTEEEE
T ss_pred CCCCCCcCeEEEEEEeeCCEEEE
Confidence 1256899999999999999998
No 4
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=100.00 E-value=5e-58 Score=409.50 Aligned_cols=166 Identities=21% Similarity=0.398 Sum_probs=138.5
Q ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcceEEEeccCChhhhhhc-CCcceEEeeeeccCCCCcC---CCCccC-Ccccc
Q psy6731 1 MSDAGNWCLIESDPGVFTELIRGFGVQGVQVEELWSLEPENLKIL-QPVHGLIFLFKLREDTEPA---GSIVQD-SRLET 75 (258)
Q Consensus 1 M~~~~~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD~~~L~~l-~PV~glIfLFp~~~~~~~~---~~~~~d-~~~~~ 75 (258)
||+.++||||||||+|||+|+++|||++++|+||||||+|+|+++ +|||||||||||++.++.. .....+ ...++
T Consensus 1 Ma~~~~w~plESnP~Vft~l~~~lGv~~~~f~DVysld~e~L~~lP~Pv~alIfLFp~~~~~e~~~~~~~~~~~~~~~~~ 80 (232)
T 2wdt_A 1 MAKNDIWTPLESNPDSLYLYSCKLGQSKLKFVDIYGFNNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENFDN 80 (232)
T ss_dssp ----CCCCCCBCCHHHHHHHHHHHTCCSEEEEECCCSSHHHHTTSCSCCCEEEEEEECC------------------CTT
T ss_pred CCCCCcceeecCCHHHHHHHHHHhCCCCeEEEEcccCCHHHHhhCCCCceEEEEEEECCcccchhhccccccccccCCCC
Confidence 877678999999999999999999999999999999999999999 9999999999999865443 111100 12367
Q ss_pred ccchhhhccchhHHHHHHHHhcCCCC-CCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhccc-----CCcC
Q psy6731 76 IFFAKQVVNNACATQAILSILLNNSD-PEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFARY-----SSEE 149 (258)
Q Consensus 76 vfFakQtI~NACgT~AlLh~L~N~~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~~-----~~~e 149 (258)
|||+||||+||||||||||+|+|+++ ..|++||.|++|+++|.+|+|++||.+|+|++.|+.+||||+.. .+++
T Consensus 81 v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~~g~t~~p~~~~~ 160 (232)
T 2wdt_A 81 VWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKVNEMSAEKRGQELKNNKSIENLHHEFCGQVENRDDILD 160 (232)
T ss_dssp SCCCCCCSTTCHHHHHHHHHHHHSTTTSCCCTTSHHHHHHHHTTTSCHHHHHHHHHHCHHHHHHHTTSSCCCCSHHHHHC
T ss_pred cEEeeeccccchHHHHHHHHHhcCccccccCCChHHHHHHHHccCCCHHHHHHHhhccHHHHHHHHhccCccCCCCCCCC
Confidence 99999999999999999999999863 24588999999999999999999999999999999999999642 2467
Q ss_pred cceEEEEEEecChhhHH
Q psy6731 150 IRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 150 i~fh~~A~V~d~~~~~E 166 (258)
+.|||||||+.+|++||
T Consensus 161 v~~HFI~fV~~~G~LyE 177 (232)
T 2wdt_A 161 VDTHFIVFVQIEGKIIE 177 (232)
T ss_dssp CCEEEEEEEESSSEEEE
T ss_pred CCeEEEEEEEeCCEEEE
Confidence 89999999999999998
No 5
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=100.00 E-value=2e-57 Score=404.71 Aligned_cols=162 Identities=22% Similarity=0.410 Sum_probs=142.9
Q ss_pred CCcccccCCHHHHHHHHHhcCCCc-ceEEEeccCChhhhhhc-CCcceEEeeeeccCCCCcCC-----CCccCCcccccc
Q psy6731 5 GNWCLIESDPGVFTELIRGFGVQG-VQVEELWSLEPENLKIL-QPVHGLIFLFKLREDTEPAG-----SIVQDSRLETIF 77 (258)
Q Consensus 5 ~~W~pLESdP~VFt~li~~LGv~~-~qf~DVysLD~~~L~~l-~PV~glIfLFp~~~~~~~~~-----~~~~d~~~~~vf 77 (258)
..||||||||+|||+|+++|||++ ++|+||||||+|+|+++ +|||||||||||++.++..+ ........++||
T Consensus 6 ~~w~pLESnP~Vft~l~~~LGv~~~~~f~DVysLD~dlL~~lP~Pv~alIfLFP~~~~~e~~r~~~~~~~~~~~~~~~v~ 85 (228)
T 4dm9_A 6 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVY 85 (228)
T ss_dssp CCCCCCCCSHHHHHHHHHHTTBCSSEEEEEECCSSHHHHHTSCSCEEEEEEEEECCHHHHHHHHHHHHHHTTTTSCTTSC
T ss_pred CceeeccCCHHHHHHHHHHcCCCCceEEEEeecCCHHHHhhCCCCceEEEEEecccchhhhhhhhhhccccccCCCcccE
Confidence 589999999999999999999997 99999999999999999 99999999999987654211 001111236799
Q ss_pred chhhhccchhHHHHHHHHhcCCCC-CCCCCCChhhHHHhhccCCChhhHHhhhcCChHHHHHhhhhccc----CCcCcce
Q psy6731 78 FAKQVVNNACATQAILSILLNNSD-PEVKLGSVLTEFKDFCQSFDPTMKGYALSNSQPIRTVHNSFARY----SSEEIRF 152 (258)
Q Consensus 78 FakQtI~NACgT~AlLh~L~N~~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~ns~~i~~aHns~A~~----~~~ei~f 152 (258)
|+||||+||||||||||+|+|+++ ..|++||.|++|+++|.+|+|++||.+|+|++.|+.+|||||+. .++++.|
T Consensus 86 f~kQtI~NACgt~ALLh~l~N~~~~i~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~~i~~aHns~A~~g~t~~~~~~~~ 165 (228)
T 4dm9_A 86 FMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNF 165 (228)
T ss_dssp CCCCCSTTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHHHTTTSCHHHHHHHHHTCHHHHHHHHHHHTTSSCCCCTTCCE
T ss_pred EeeeeccccHHHHHHHHHHhcCccccccCCCcHHHHHHHHhccCCHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCCCCc
Confidence 999999999999999999999862 23559999999999999999999999999999999999999983 4668999
Q ss_pred EEEEEEecChhhHH
Q psy6731 153 NLLAVVCDKKMKYE 166 (258)
Q Consensus 153 h~~A~V~d~~~~~E 166 (258)
||||||+.+|++||
T Consensus 166 HFIafV~~dG~LyE 179 (228)
T 4dm9_A 166 HFILFNNVDGHLYE 179 (228)
T ss_dssp EEEEEEEETTEEEE
T ss_pred eEEEEEEeCCeEEE
Confidence 99999999999998
No 6
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=100.00 E-value=4.7e-57 Score=403.67 Aligned_cols=164 Identities=26% Similarity=0.379 Sum_probs=137.4
Q ss_pred CCCC-CCcccccCCHHHHHHHHHhcCC-CcceEEEeccC-Chhhhhhc-CCcceEEeeeeccCCCCcCCCCccCCccccc
Q psy6731 1 MSDA-GNWCLIESDPGVFTELIRGFGV-QGVQVEELWSL-EPENLKIL-QPVHGLIFLFKLREDTEPAGSIVQDSRLETI 76 (258)
Q Consensus 1 M~~~-~~W~pLESdP~VFt~li~~LGv-~~~qf~DVysL-D~~~L~~l-~PV~glIfLFp~~~~~~~~~~~~~d~~~~~v 76 (258)
||+. ++||||||||+|||+|+++||| ++++|+||||| |+|+|+++ +|||||||||||++.++..+....+ ..++|
T Consensus 1 Ms~~~k~w~plESnP~Vft~l~~~lGv~~~~~f~DVysLdd~e~L~~lP~Pv~alIfLFp~~~~~e~~r~~~~~-~~~~v 79 (235)
T 1cmx_A 1 MSGENRAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQIT-SSYDV 79 (235)
T ss_dssp -----CBCCCEECCHHHHHHHHHHHTBCTTEEEEEECCSSCTTGGGSSCSSCCEEEEEEECC----------------CC
T ss_pred CCCCCCceeeecCCHHHHHHHHHHcCCCCCcEEEEcccCCCHHHHhcCCCCcEEEEEEEeCCcccccccccccc-cccCc
Confidence 7763 6899999999999999999999 68999999999 56999999 9999999999999876554332222 23679
Q ss_pred cchhhhccchhHHHHHHHHhcCCCCCCCCCCChhhHHHhhccCCChhhHHh--hhcCChHHHHHhh--hhcc-------c
Q psy6731 77 FFAKQVVNNACATQAILSILLNNSDPEVKLGSVLTEFKDFCQSFDPTMKGY--ALSNSQPIRTVHN--SFAR-------Y 145 (258)
Q Consensus 77 fFakQtI~NACgT~AlLh~L~N~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~--~L~ns~~i~~aHn--s~A~-------~ 145 (258)
||+||||+||||||||||+|+|+. ..|++||.|++|+++|.+|+|++||. +|+|++.|+.+|| +||+ .
T Consensus 80 ~f~kQtI~NACgT~AlLh~l~N~~-~~i~~gs~L~~f~~~t~~~~p~~Rg~~~~L~n~~~i~~aHn~~s~A~~g~t~~p~ 158 (235)
T 1cmx_A 80 IWFKQSVKNACGLYAILHSLSNNQ-SLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPE 158 (235)
T ss_dssp CEECCCSBTCHHHHHHHHHHHTCG-GGBCTTSHHHHHHHHHHHHTSCSSEECSHHHHHHHHHHHHTCHHHHHCSSSCCCC
T ss_pred EeehhhhcccHHHHHHHHHHhccC-ccCCCCcHHHHHHHHhcCCCHHHhcchhhccccHHHHHHhChhhhhcccCCCCCC
Confidence 999999999999999999999983 46999999999999999999999999 9999999999999 9998 1
Q ss_pred CCcCcceEEEEEEecChhhHH
Q psy6731 146 SSEEIRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 146 ~~~ei~fh~~A~V~d~~~~~E 166 (258)
.++++.|||||||+.+|++||
T Consensus 159 ~~~~~~~HFI~fV~~~G~LyE 179 (235)
T 1cmx_A 159 ATADTNLHYITYVEENGGIFE 179 (235)
T ss_dssp TTSCCSEEEEEEEECSSEEEE
T ss_pred CCCCCCeEEEEEEeeCCEEEE
Confidence 256899999999999999998
No 7
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=86.75 E-value=0.14 Score=47.47 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.4
Q ss_pred CcceEEEEEEecChhhHH
Q psy6731 149 EIRFNLLAVVCDKKMKYE 166 (258)
Q Consensus 149 ei~fh~~A~V~d~~~~~E 166 (258)
++.|||||||+.+|++||
T Consensus 160 ~~~~HFIafV~~dG~LyE 177 (328)
T 3ihr_A 160 EDAFHFVSYVPVNGRLYE 177 (328)
T ss_dssp --CEEEEEEEEETTEEEE
T ss_pred CcceeEEEEEeeCCEEEE
Confidence 478999999999999998
No 8
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=64.25 E-value=3.2 Score=36.41 Aligned_cols=40 Identities=38% Similarity=0.631 Sum_probs=24.7
Q ss_pred hhhHHhhhcCChHHHH----HhhhhcccCCcCcceEEEEEEecCh
Q psy6731 122 PTMKGYALSNSQPIRT----VHNSFARYSSEEIRFNLLAVVCDKK 162 (258)
Q Consensus 122 p~~Rg~~L~ns~~i~~----aHns~A~~~~~ei~fh~~A~V~d~~ 162 (258)
|-.+|.+ +..+.+.. +-..+++|++++|+||+||+++|++
T Consensus 190 Pi~~G~~-~~e~~l~~a~~vi~~ri~~~~~~ei~FslmAL~~d~~ 233 (233)
T 3rii_A 190 PIDLGAC-NQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 233 (233)
T ss_dssp CEEEEEC-CSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEECC-
T ss_pred CcccCCC-CchhHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCCC
Confidence 5556654 23334432 2233445777899999999999874
No 9
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.96 E-value=22 Score=28.32 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=28.8
Q ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcceEEEeccCC
Q psy6731 1 MSDAGNWCLIESDPGVFTELIRGFGVQGVQVEELWSLE 38 (258)
Q Consensus 1 M~~~~~W~pLESdP~VFt~li~~LGv~~~qf~DVysLD 38 (258)
||. .|.-.-|||+++.++++.+--.|+.+.=+||=.
T Consensus 1 msq--ifvvfssdpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 1 MSQ--IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp CCE--EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred Cce--EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 554 577788999999999998877788888888853
No 10
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=29.85 E-value=26 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.8
Q ss_pred CCcCcceEEEEEEecC
Q psy6731 146 SSEEIRFNLLAVVCDK 161 (258)
Q Consensus 146 ~~~ei~fh~~A~V~d~ 161 (258)
..++++|++||++++.
T Consensus 213 ~~~ei~FslmAL~~~~ 228 (228)
T 4dm9_A 213 EQGEVRFSAVALCKAA 228 (228)
T ss_dssp SCSCCCCEEEEEEECC
T ss_pred CCCCceEEEEEEecCC
Confidence 5678999999999873
No 11
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=24.68 E-value=35 Score=29.75 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=13.9
Q ss_pred ccCCcCcceEEEEEEecC
Q psy6731 144 RYSSEEIRFNLLAVVCDK 161 (258)
Q Consensus 144 ~~~~~ei~fh~~A~V~d~ 161 (258)
++ .++++|++||++++.
T Consensus 211 ~~-~~~i~FslmAl~~~~ 227 (232)
T 2wdt_A 211 KC-KDDLRFSALAVIPND 227 (232)
T ss_dssp TC-SSCCCCEEEEEEEC-
T ss_pred hC-CCCceEEEEEEeeCC
Confidence 35 579999999999984
No 12
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=21.01 E-value=44 Score=28.98 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=12.1
Q ss_pred CcCcceEEEEEEec
Q psy6731 147 SEEIRFNLLAVVCD 160 (258)
Q Consensus 147 ~~ei~fh~~A~V~d 160 (258)
.++++|++||++++
T Consensus 217 ~~~i~FslmAl~~~ 230 (230)
T 1xd3_A 217 PDELRFNAIALSAA 230 (230)
T ss_dssp TTCCCCEEEEEEEC
T ss_pred CCCceEEEEEEecC
Confidence 46999999999974
No 13
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=20.47 E-value=29 Score=21.78 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=9.1
Q ss_pred HHHHhhHHHHhh
Q psy6731 205 AKLESYRIENIR 216 (258)
Q Consensus 205 ~kr~~~~~En~r 216 (258)
.|+++|+.||.-
T Consensus 3 ~~~~~W~~EN~~ 14 (36)
T 3hpw_C 3 LRAERWKAENQE 14 (36)
T ss_dssp -CHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467889999974
No 14
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=20.45 E-value=45 Score=29.16 Aligned_cols=19 Identities=11% Similarity=0.287 Sum_probs=15.1
Q ss_pred hcccCC-cCcceEEEEEEec
Q psy6731 142 FARYSS-EEIRFNLLAVVCD 160 (258)
Q Consensus 142 ~A~~~~-~ei~fh~~A~V~d 160 (258)
.+++++ ++++|++||++++
T Consensus 215 m~~~~~~~~i~FslmAL~~~ 234 (235)
T 1cmx_A 215 MENANEEDVLNFAMLGLGPN 234 (235)
T ss_dssp HHHHHHHTCCCCEEEEEEEC
T ss_pred HHhccccCCceEEEEEEecC
Confidence 344665 6999999999986
Done!