RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6731
         (258 letters)



>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score =  162 bits (411), Expect = 3e-50
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 10/152 (6%)

Query: 3   DAGNWCLIESDPGVFTELIRGFGVQ-GVQVEELWSLEPENLK-ILQPVHGLIFLFKL--- 57
           +   W  +E++P V  + ++  G+    Q  +++ ++PE L  + +PV  ++ LF +   
Sbjct: 1   EGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEK 60

Query: 58  ----REDTEPAGSIVQDSRLETIFFAKQVVNNACATQAILSILLNNSDP-EVKLGSVLTE 112
               R + E            +++F KQ ++NAC T  ++  + NN D    + GS L +
Sbjct: 61  YEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKK 120

Query: 113 FKDFCQSFDPTMKGYALSNSQPIRTVHNSFAR 144
           F +   S  P  +   L N   IR  H + A 
Sbjct: 121 FLEESVSMSPEERARYLENYDAIRVTHETSAH 152



 Score = 26.8 bits (59), Expect = 2.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 142 FARYSSEEIRFNLLAVV 158
           F     +E+RFN +A+ 
Sbjct: 211 FMERDPDELRFNAIALS 227


>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase
           isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 223

 Score =  151 bits (384), Expect = 3e-46
 Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 7   WCLIESDPGVFTELIRGFGVQGV-QVEELWSLEPENLKIL-QPVHGLIFLFKLREDTE-- 62
              +E +P +  +++   GV G  +  ++  LE E+L  +  P   L+ LF L    E  
Sbjct: 3   LKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENF 62

Query: 63  ---PAGSIVQDSRLETIFFAKQVVNNACATQAILSILLNNSDP-EVKLGSVLTEFKDFCQ 118
                  +        ++F KQ + N+C T  ++  + NN D    + GSVL +F    +
Sbjct: 63  RKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETE 122

Query: 119 SFDPTMKGYALSNSQPIRTVHNSFAR----YSSEEIRFNLLAVVCDKKMKYE 166
              P  +      ++ I+  H++ A+       +++ F+ +         YE
Sbjct: 123 KMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYE 174



 Score = 28.3 bits (63), Expect = 0.69
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 142 FARYSSEEIRFNLLAVV 158
           F      E+RF+ +A+ 
Sbjct: 204 FTEREQGEVRFSAVALC 220


>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Synthetic, based on Saccharomyces cerevisiae sequence}
          Length = 229

 Score =  130 bits (327), Expect = 1e-37
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 10  IESDPGVFTELIRGFGVQG-VQVEELWSL-EPENLKIL-QPVHGLIFLFKLREDTEPAGS 66
           IES+P VFT      G++      +++SL EPE L  L +PV  ++ LF + ED + + S
Sbjct: 6   IESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTS 65

Query: 67  IVQDSRLETIFFAKQVVNNACATQAILSILLNNSDPEVKLGSVLTEF-KDFCQSFDPTMK 125
               S  + + + KQ V NAC   AIL  L NN    ++ GS L  F K    +     +
Sbjct: 66  QQITSSYD-VIWFKQSVKNACGLYAILHSLSNNQS-LLEPGSDLDNFLKSQSDTSSSKNR 123

Query: 126 GYALSNSQPIRTVHNSFARYSSEE 149
              ++  Q +  V     +  S  
Sbjct: 124 FDDVTTDQFVLNVIKENVQTFSTG 147


>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 27.7 bits (60), Expect = 1.7
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 152 FNLLAVVCDKKMKYEKELAAATQALKDPSLDAATKTAKQNEVVQLKILIEEEAAKLESYR 211
              LA V  ++   +  +    +A++   L      A  N    LK       A  E   
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA--EDCY 294

Query: 212 IENIRRKHNYLPLIMNLLKLLAKQGQL---VNLYQKAVELN 249
              +R    +   + NL  +  +QG +   V LY+KA+E+ 
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335


>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 26.7 bits (58), Expect = 3.5
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 215 IRRKHNYLPLIMNLLKLLAKQGQLVNLYQKAVELN 249
              K +     +   ++   +  L +LYQK +  +
Sbjct: 13  EVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTD 47


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 25.5 bits (56), Expect = 6.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 89  TQAILSILLNNSDPEV 104
            +A L +L NN  P+V
Sbjct: 16  QEAALRMLNNNLHPDV 31


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 25.5 bits (56), Expect = 7.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 89  TQAILSILLNNSDPEV 104
           T+A L +L+NN DP+V
Sbjct: 24  TEAPLRMLMNNLDPQV 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 890,839
Number of extensions: 39807
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 18
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)