BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6733
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
JANNASCHII
pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
METHANOCALDOCOCCUS Jannaschii Dsm 2661
Length = 320
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 116 TLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDI 165
L I D V+G T VA G S+P+ + SLA K G M + N +GSN+ DI
Sbjct: 192 ALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADI 241
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 119 IPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTA 178
+ + V+G T +A G S+P+ L+S +++ NA+GS + +I + LGL +
Sbjct: 36 VSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLSAIISPI 95
Query: 179 IIKPGSHVNVYSKGLTYSTISLFSTVV 205
I+ N+ L Y +F+ V+
Sbjct: 96 IVDKNLQKNI----LVYLLFVIFAAVI 118
>pdb|3L0Z|A Chain A, Crystal Structure Of A Putative Nicotinate-Nucleotide-
Dimethylbenzimidazole Phosphoribosyltransferase From
Methanocaldococcus Jannaschii Dsm 2661
pdb|3L0Z|B Chain B, Crystal Structure Of A Putative Nicotinate-Nucleotide-
Dimethylbenzimidazole Phosphoribosyltransferase From
Methanocaldococcus Jannaschii Dsm 2661
pdb|3L0Z|C Chain C, Crystal Structure Of A Putative Nicotinate-Nucleotide-
Dimethylbenzimidazole Phosphoribosyltransferase From
Methanocaldococcus Jannaschii Dsm 2661
Length = 350
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 106 LIVSSIVPGSTLGIPDTVMGLTFVAAG------VSVPDALSSLAVVKEGYGDMAVSNAVG 159
LIV VPG T ++GL + A G ++ P L + VV+EG ++
Sbjct: 146 LIVGESVPGGTTTALGVLLGLGYDAEGKVSSGSINNPHEL-KIKVVREGLKKAGINEK-- 202
Query: 160 SNVFDILVCLG 170
S+VFD+L +G
Sbjct: 203 SSVFDVLNAVG 213
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 168 CLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLISATH 212
C WF + +I+ PG ++ K + Y T S + V+ S T+
Sbjct: 38 CFSKKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTY 82
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 26.9 bits (58), Expect = 9.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 192 GLTYSTISLFSTVVFLISATHMNGWKLDRRYGAILMMWYFVFLIVGSL 239
G Y +S+ S LI T W R GA+LM+ + + ++ +L
Sbjct: 755 GAVYLQVSIISQA--LIFVTRSRSWSFVERPGALLMIAFLIAQLIATL 800
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,139,507
Number of Sequences: 62578
Number of extensions: 313880
Number of successful extensions: 669
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)