Query psy6733
Match_columns 257
No_of_seqs 238 out of 1474
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:04:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.9 5.4E-22 1.9E-26 182.6 10.5 138 93-243 10-148 (320)
2 3v5u_A Uncharacterized membran 99.8 4.4E-21 1.5E-25 176.6 8.8 131 94-239 170-302 (320)
3 2cs3_A Protein C14ORF4, MY039 29.9 20 0.00068 26.2 1.3 24 9-32 55-90 (93)
4 1fqj_C Retinal ROD rhodopsin-s 13.6 21 0.00073 22.2 -1.2 14 8-21 16-29 (42)
5 3f6n_A Virion-associated prote 10.6 91 0.0031 24.2 1.2 12 20-31 61-72 (129)
6 1oig_A Dumpy, CG33196-PB; stru 8.4 86 0.0029 17.8 0.2 13 10-22 5-17 (26)
7 1eci_A Ectatomin; pore-forming 8.0 29 0.00098 20.9 -2.0 19 13-31 10-32 (37)
8 2wfu_B Probable insulin-like p 7.6 1.2E+02 0.0042 17.0 0.6 15 17-31 2-16 (26)
9 1jy2_O Fibrinogen beta chain; 6.9 86 0.003 20.9 -0.3 19 10-32 18-36 (56)
10 3ukw_C Bimax1 peptide; arm rep 6.8 1.3E+02 0.0043 16.9 0.4 8 30-37 15-22 (28)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.86 E-value=5.4e-22 Score=182.64 Aligned_cols=138 Identities=18% Similarity=0.272 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCchhhhHHHHhhcCChhHHHHHHHHHHhCCCCcccccccchhhHHHHHhhhHh
Q psy6733 93 IMVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLP 172 (257)
Q Consensus 93 vv~~~l~~~~a~~lv~~~~~ig~~lgIs~~v~GlTilA~GtSlPDli~si~aar~G~~dmAvgniiGSnifnill~lGl~ 172 (257)
+.+..+...++|+++++++.+++++|+||.+.|+|++|+|||+||+++++.++++|++|+|+||++|||+||+++++|++
T Consensus 10 ~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillvlG~~ 89 (320)
T 3v5u_A 10 LLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLS 89 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhccCCceeEeccCchHHHHHH-HHHHHHHHHHHHHhCCceecHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6733 173 WFLQTAIIKPGSHVNVYSKGLTYSTIS-LFSTVVFLISATHMNGWKLDRRYGAILMMWYFVFLIVGSLYELN 243 (257)
Q Consensus 173 ~li~~~~~~~~~~v~v~~~~l~~~~l~-l~~~ll~~~~~~~~~~~~l~r~~GiiLl~lY~~fl~~~il~e~~ 243 (257)
.++++... ++....+... ++.++++. . . ..++ ++|++|++|+..|+.|+.+.+..+.+
T Consensus 90 ~li~p~~v---------~~~~~~d~~~~l~~~~~l~-~-~-~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 90 AIISPIIV---------DKNLQKNILVYLLFVIFAA-V-I-GIDG-FSWIDGVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp HHHSCBCC---------CHHHHHHHHHHHHHHHHHH-H-H-TTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHccccc---------cHHHHHHHHHHHHHHHHHH-H-H-HHcc-cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99876432 1122233322 22222222 1 2 3455 99999999999999999999987764
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.83 E-value=4.4e-21 Score=176.60 Aligned_cols=131 Identities=22% Similarity=0.314 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCCchhhhHHHHhhcCChhHHHHHHHHHHhCCCCcccccccchhhHHHHHhhhHhH
Q psy6733 94 MVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPW 173 (257)
Q Consensus 94 v~~~l~~~~a~~lv~~~~~ig~~lgIs~~v~GlTilA~GtSlPDli~si~aar~G~~dmAvgniiGSnifnill~lGl~~ 173 (257)
.+..+...++|+++++++.+++.+|+||.++|+|++|+|||+||+++++.++|||+.|+|+||++|||+||+++++|+++
T Consensus 170 ~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~ 249 (320)
T 3v5u_A 170 IGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGS 249 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhccCCceeEeccCchHHHHH-HHHHHHHHHHHHHHhCCceecHHHHHHHHHHHHH-HHHHHHH
Q psy6733 174 FLQTAIIKPGSHVNVYSKGLTYSTI-SLFSTVVFLISATHMNGWKLDRRYGAILMMWYFV-FLIVGSL 239 (257)
Q Consensus 174 li~~~~~~~~~~v~v~~~~l~~~~l-~l~~~ll~~~~~~~~~~~~l~r~~GiiLl~lY~~-fl~~~il 239 (257)
++++.. ++ .++.. +++.+++... ..+|+|++|++|++++..|++ |+.+.+.
T Consensus 250 li~p~~--------~~----~~d~~~~l~~~~ll~~---~~~~~~i~~~eG~~ll~~Y~~~y~~~~~~ 302 (320)
T 3v5u_A 250 LFMHLP--------AE----NVQMAVLVIMSLLLYL---FAKYSKIGRWQGILFLALYIIAIASLRMG 302 (320)
T ss_dssp HHSCBC--------CC----HHHHHHHHHHHHHHHH---HHHHSCBSHHHHHHHHHHHHHHHHHSCSS
T ss_pred hhcccc--------ch----HHHHHHHHHHHHHHHH---HHhCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 876431 22 23332 2233333322 246889999999999999999 9976553
No 3
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=29.90 E-value=20 Score=26.19 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=16.9
Q ss_pred CCCcccCCChhhH------------HHHHHhhhccC
Q psy6733 9 ADTDVFCPTAKYC------------TATLAATLDKQ 32 (257)
Q Consensus 9 ~~~~~~~~~~~~~------------~~~~~~~~~~~ 32 (257)
++++++||..+.| ..||+..|++|
T Consensus 55 ~~~EvyCPSG~kCpL~gS~~PWAFmqgEIatILg~~ 90 (93)
T 2cs3_A 55 ATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILSGP 90 (93)
T ss_dssp SSSCCCCTTSSCCBCSSSSSBCCCCHHHHHHHHSCS
T ss_pred CCCcEECCCCCccccCCCcCchHHHhhHHHHHhccc
Confidence 4578888888777 36677766664
No 4
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=13.64 E-value=21 Score=22.24 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=10.7
Q ss_pred CCCCcccCCChhhH
Q psy6733 8 GADTDVFCPTAKYC 21 (257)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (257)
|+|..++||-..+-
T Consensus 16 gtD~tViCPWEAf~ 29 (42)
T 1fqj_C 16 GTDITVICPWEAFN 29 (42)
T ss_dssp CHHHHTTCGGGGGT
T ss_pred CCCeEEEcchHhcC
Confidence 67889999976443
No 5
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=10.57 E-value=91 Score=24.23 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.1
Q ss_pred hHHHHHHhhhcc
Q psy6733 20 YCTATLAATLDK 31 (257)
Q Consensus 20 ~~~~~~~~~~~~ 31 (257)
-|+.+|+++|+.
T Consensus 61 eCnkei~e~L~~ 72 (129)
T 3f6n_A 61 PCNKEILEALGT 72 (129)
T ss_dssp TTHHHHHHHHTC
T ss_pred cchHHHHHHHcc
Confidence 388999999976
No 6
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila melanogaster} SCOP: g.3.18.1
Probab=8.44 E-value=86 Score=17.78 Aligned_cols=13 Identities=23% Similarity=0.605 Sum_probs=10.2
Q ss_pred CCcccCCChhhHH
Q psy6733 10 DTDVFCPTAKYCT 22 (257)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (257)
..|+-||..++|.
T Consensus 5 ~~~sdCp~~~aC~ 17 (26)
T 1oig_A 5 VLNSDCPSNQACV 17 (26)
T ss_dssp CSSTTSSTTCEEC
T ss_pred cccCcCCcCHhhh
Confidence 4678899988885
No 7
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=8.02 E-value=29 Score=20.90 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=14.3
Q ss_pred ccCCC----hhhHHHHHHhhhcc
Q psy6733 13 VFCPT----AKYCTATLAATLDK 31 (257)
Q Consensus 13 ~~~~~----~~~~~~~~~~~~~~ 31 (257)
.+||| +|.|...|+.|..+
T Consensus 10 ticpt~~~~akkc~g~iat~ik~ 32 (37)
T 1eci_A 10 TVCPTVEPWAKKCSGDIATYIKR 32 (37)
T ss_dssp HHHHHHHHHHHTBCHHHHHHHHH
T ss_pred HhCcchHHHHHHccchHHHHHHH
Confidence 46876 67898888888765
No 8
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=7.55 E-value=1.2e+02 Score=17.05 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=11.5
Q ss_pred ChhhHHHHHHhhhcc
Q psy6733 17 TAKYCTATLAATLDK 31 (257)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (257)
+.+.|-+.|-|+|+.
T Consensus 2 ~~~lCG~~L~eaL~~ 16 (26)
T 2wfu_B 2 SLRACGPALMDMLRV 16 (26)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHH
Confidence 456888999988863
No 9
>1jy2_O Fibrinogen beta chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_O
Probab=6.88 E-value=86 Score=20.93 Aligned_cols=19 Identities=53% Similarity=0.966 Sum_probs=13.7
Q ss_pred CCcccCCChhhHHHHHHhhhccC
Q psy6733 10 DTDVFCPTAKYCTATLAATLDKQ 32 (257)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (257)
|-.+.|||. | +|+++|=||
T Consensus 18 dlGVLCPTG--C--eLq~tLlKQ 36 (56)
T 1jy2_O 18 DLGVLCPTG--C--KLQDTLVRQ 36 (56)
T ss_dssp TTCEEEECH--H--HHHHHHHHH
T ss_pred ccCeeCCCc--c--hHHHHHHHh
Confidence 556899997 4 677777655
No 10
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=6.82 E-value=1.3e+02 Score=16.87 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=5.2
Q ss_pred ccCCCCCC
Q psy6733 30 DKQTLPPC 37 (257)
Q Consensus 30 ~~~~~~~~ 37 (257)
|+|++||-
T Consensus 15 dedeeppr 22 (28)
T 3ukw_C 15 DEDEEPPR 22 (28)
T ss_dssp CGGGSCCS
T ss_pred ccccCcch
Confidence 67777663
Done!