RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6733
(257 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 120 bits (301), Expect = 8e-31
Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 21/190 (11%)
Query: 54 YPATCSIHHAGREGPKKFRDCTPFTFASVCSGISVYSLLIMVWMITIVCYRYLIVSSIVP 113
+P ++ R+ +KF TF I+++S L MVW V
Sbjct: 916 FPLWLTVPDVRRQEARKF---FVITFLGSIMWIAMFSYL-MVWWAHQV------------ 959
Query: 114 GSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPW 173
G T+GI + +MGLT +AAG S+PD ++S+ V ++G GDMAVS++VGSN+FDI V L +PW
Sbjct: 960 GETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPW 1019
Query: 174 FLQTAI--IKPGSHVNVYSKGLTYSTISLFSTVVFLISATHMNGWKLDRRYGAILMMWYF 231
L + I ++P V V S GL + + LF ++F+IS+ W++++ G + + YF
Sbjct: 1020 LLFSLINGLQP---VPVSSNGLFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYF 1076
Query: 232 VFLIVGSLYE 241
VFLI+ + E
Sbjct: 1077 VFLIISVMLE 1086
Score = 48.8 bits (116), Expect = 1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 88 VYSLLIMVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKE 147
++ ++ + + IVC Y + + V L I + V G TF+AAG S P+ +SL V
Sbjct: 461 IFGMMYVFVALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFI 520
Query: 148 GYGDMAVSNAVGSNVFDILVCLG 170
+ ++ + VGS VF+IL +G
Sbjct: 521 SHSNVGIGTIVGSAVFNILFVIG 543
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells. Ca2+
is moved into or out of the cytosol depending on Na+
concentration. In humans and rats there are 3 isoforms;
NCX1 NCX2 and NCX3.
Length = 135
Score = 89.6 bits (223), Expect = 1e-22
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 98 ITIVCYRYLIVSSIVP-GSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSN 156
+ I+ L+V S LGI TV+GLT +A G S+P+ SS+ +G D+A+ N
Sbjct: 1 LLIILLADLLVDSAESIAEVLGISPTVIGLTLLALGTSLPELFSSIIAALKGNADLALGN 60
Query: 157 AVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLISATHMNGW 216
+GSN+F+IL+ LGL + + V V L +S + L ++ L +
Sbjct: 61 VIGSNLFNILLVLGLSALISPIGL----KVLVSPLSLDFSFLLLVLLLLLLFLLL--SDG 114
Query: 217 KLDRRYGAILMMWYFVFLIV 236
++ R G +L++ Y V+L++
Sbjct: 115 RISRFEGLVLLLLYIVYLVL 134
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 91.2 bits (227), Expect = 1e-21
Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 91 LLIMVWMITIVCYRYLIV-SSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGY 149
+L+++ +I +V L+V ++ LGI + ++GLT +A G S+P+ + SLA ++G
Sbjct: 173 VLLIIGLIGLVVGSRLLVDGAVKIAEILGISEKIIGLTLLAIGTSLPELVVSLAAARKGL 232
Query: 150 GDMAVSNAVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLIS 209
GD+AV N +GSN+F+ILV LG+P ++P ++ L + + + ++ L
Sbjct: 233 GDIAVGNVIGSNIFNILVGLGVPSLFMPIPVEPLAYN------LDAPVMVIVTLLLMLFF 286
Query: 210 ATHMNGWKLDRRYGAILMMWYFVF 233
T M KL R G +L+ Y +
Sbjct: 287 KTSM---KLGRWEGILLLALYIAY 307
Score = 72.0 bits (177), Expect = 1e-14
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 86 ISVYSLLIMVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVV 145
+ + LI+ ++ I + SS+ LGI ++G+T VA G S+P+ +SL
Sbjct: 1 LLLIGYLILGLILLIYGADLFVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIAS 60
Query: 146 KEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVV 205
G D+ V N +GSN+F+IL+ LGL +AI P + V L + +
Sbjct: 61 LMGQPDIGVGNVIGSNIFNILLILGL-----SAIFSP---IIVDKDWLRRDILFYLLVSI 112
Query: 206 FLISATHMNGWKLDRRYGAILMMWYFVFL 234
L+ R G +L++ Y V+L
Sbjct: 113 LLLFFGLDGQI--SRIDGVVLLILYIVYL 139
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 83.4 bits (207), Expect = 9e-19
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 104 RYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVF 163
L+ ++ GI + ++GLT VA G S+P+ + S+ ++G D+AV N +GSN+F
Sbjct: 192 ELLVDGAVEIAEIFGISELIIGLTIVAIGTSLPELVVSIVAARKGEDDIAVGNVIGSNIF 251
Query: 164 DILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLISATHMNGWKLDRRYG 223
+IL+ LG+ A+I P + S L + + + T++ L+ ++ R+ G
Sbjct: 252 NILIVLGIS-----ALIGPITVEP--SALLVDAPVLILVTLLLLLFLA-RRRRRIGRKEG 303
Query: 224 AILMMWYFVFLI 235
+L+ Y V++
Sbjct: 304 LLLLGLYIVYVA 315
Score = 68.4 bits (168), Expect = 2e-13
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 87 SVYSLLIMVWMITIVCYRYLIVSS--IVPGST-----LGIPDTVMGLTFVAAGVSVPDAL 139
S +L+++ ++ I L+ + +V ++ GI + ++GLT VA G S+P+
Sbjct: 3 SALEMLLLLILLLIAGLILLVKGADLLVDAASAISRRFGISELIIGLTIVAFGTSLPELA 62
Query: 140 SSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTIS 199
SL G D+AV N +GSN+F+IL+ LGL A+I P
Sbjct: 63 VSLVAALSGNPDIAVGNVLGSNIFNILLILGL-----AALIAPLKV-----DSDVLRREI 112
Query: 200 LFSTVVFLISATHMNGWKLDRRYGAILMMWYFVFLIV 236
F + LI + L R G +L++ Y ++L
Sbjct: 113 PFLLLATLILLLVLLDGHLSRLDGIVLLLLYVLYLYY 149
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 60.0 bits (146), Expect = 1e-10
Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 92 LIMVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGD 151
LI++ M T R +I ++ V + I + +GLT +A G S+P+ +++A ++G D
Sbjct: 183 LIIMPMAT----RMVIDNATVLANYFAISELTIGLTVIAIGTSLPELATAIAGARKGEND 238
Query: 152 MAVSNAVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLISAT 211
+AV N +GSN+F+I++ LGLP A+I PG +N + Y + L S + L+
Sbjct: 239 IAVGNIIGSNIFNIVIVLGLP-----ALISPG-EINPLAFSRDYWVMLLVSVIFALLCWR 292
Query: 212 HMNGWKLDRRYGAILMMWYFVFLIV 236
++ R GA+L+ + V+L +
Sbjct: 293 RKR--RIGRGAGALLLGGFIVWLAM 315
Score = 55.0 bits (133), Expect = 6e-09
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 116 TLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPWFL 175
T GIP ++G+T V G S+P+ + S+A G D+AV A+GSN+ +IL+ LGL
Sbjct: 32 TFGIPPLIIGMTVVGIGTSLPEIIVSVAASLHGQRDLAVGTALGSNITNILLILGL---- 87
Query: 176 QTAIIKP 182
A+I+P
Sbjct: 88 -AALIRP 93
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 56.3 bits (136), Expect = 4e-09
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 114 GSTLGIPDTVMGLTFVAAGVSVPDALSS-LAVVKEGYGDMAVSNAVGSNVFDILVCLGLP 172
G T+G+ D+V + FVA G SVPD +S +A ++ Y D ++ N GSN ++ + +G+
Sbjct: 781 GCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVA 840
Query: 173 WFLQTAIIKP--GSHVNVYSKGLTYSTISLFSTVVFL 207
W + AI G+ V L +S ++LF+ F+
Sbjct: 841 WSI-AAIYHAANGTQFKVSPGTLAFS-VTLFTIFAFI 875
Score = 32.1 bits (73), Expect = 0.32
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 121 DTVMGLTFVAAGVSVPDA-LSSLAVVKEGY--GDMAVSNAVGSNVFDILVCLGL 171
+TV LT +A G S P+ LS + V + GD+ S VGS F++ + + +
Sbjct: 129 ETVSNLTLMALGSSAPEILLSVIEVCGHNFEAGDLGPSTIVGSAAFNMFIIIAI 182
>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
Length = 650
Score = 40.9 bits (96), Expect = 4e-04
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 105 YLIVSSIVP-----GSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGD---MAVSN 156
Y+I + +V G GI +++GLT +A G S+ D +S++A+ G GD +A+S
Sbjct: 497 YMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNG-GDGVQIAMSG 555
Query: 157 AVGSNVFDILVCLGLPWFLQTAIIKPGSHVNVYSKGLTYSTISLFSTVVFLISATHMNGW 216
+F+ LV LG+ L P S++ L Y+ L S +++ + N
Sbjct: 556 CYAGPMFNTLVGLGMSMLLGAWSKSPESYMLPEDSSLFYTMGFLVSGLIWALVVLPRNDM 615
Query: 217 KLDRRYGAILMMWYFVFLIV 236
+ ++ G L+ Y +FL
Sbjct: 616 RPNKTLGVGLIALYLIFLTF 635
Score = 29.3 bits (66), Expect = 2.3
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 115 STLGIPDTVMGLTFVAAGVSVPDALSSLAV-VKEGYGDMAVSNAVGSNVFDILVCLG 170
L +P TV G+T + G PD +S+A V + G++ +++ +G VF V +G
Sbjct: 171 KLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNSVLGGAVFVTCVVVG 227
>gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM)
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters which are
involved in the uptake of branched-chain amino acids
(AAs), as well as TMs of transporters involved in the
uptake of monosaccharides including ribose, galactose,
and arabinose. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. This group includes Escherichia coli LivM and
LivH, two TMs which heterodimerize to form the
translocation pathway of the E. coli branched-chain AA
LIV-1/LS transporter. This transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) and LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine. Included in this group are
proteins from transport systems that contain a single TM
which homodimerizes to generate the transmembrane pore;
for example E. coli RbsC, AlsC, and MglC, the TMs of the
high affinity ribose transporter, the D-allose
transporter and the galactose transporter, respectively.
The D-allose transporter may also to be involved in low
affinity ribose transport.
Length = 266
Score = 31.5 bits (72), Expect = 0.30
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 92 LIMVWMITIVCYRYLIVSSIVPGSTLGIPDTVMGLTFVAAGVSVPDALSSLAVVKEGYGD 151
L+ ++ T + L+ ++ I +MG + + + L ++
Sbjct: 62 LVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNI----PLGTRDTLLGLLLLFGIS 117
Query: 152 MAVSNAVGSNVFDILVCLGLPWFLQT 177
+S V + +LV + WFL+T
Sbjct: 118 GTLSIPVVLLLIVLLVLFLVIWFLRT 143
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 27.8 bits (63), Expect = 4.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 120 PDTVMGLTFVA 130
PDT+ G+TF+A
Sbjct: 23 PDTLFGVTFLA 33
>gnl|CDD|148708 pfam07259, ProSAAS, ProSAAS precursor. This family consists of
several mammalian proSAAS precursor proteins. ProSAAS
mRNA is expressed primarily in brain and other
neuroendocrine tissues (pituitary, adrenal, pancreas);
within brain, the mRNA is broadly distributed among
neurons. ProSAAS is thought to be an endogenous
inhibitor of prohormone convertase 1 may function as a
neuropeptide. N-terminal fragments of proSAAS in
intracellular Pick Bodies (PBs) may cause a functional
disturbance of neurons in Pick's disease.
Length = 203
Score = 27.5 bits (60), Expect = 6.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 6 PGGADTDVFCPTAKYCTATLAATLDKQTLPPCLTPHPVGTSRCQP 50
P D D P A+ A L A LD L L P P R +P
Sbjct: 137 PLAPDDDPDAPAAQLARALLRARLDPAALAAQLVPAPAAAPRPRP 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.452
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,023,055
Number of extensions: 1218788
Number of successful extensions: 1518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 63
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (25.9 bits)