RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6733
         (257 letters)



>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
          methyltransferase SET7/9 catalytic domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 171

 Score = 25.1 bits (54), Expect = 7.4
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 30 DKQTLPPCLTPHPVGTSRCQPHYPYPATCSIHHAGR 65
          DK T   C++ + +     +    Y A   I  AG 
Sbjct: 1  DKST-SSCISTNALLPDPYESERVYVAESLISSAGE 35


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 25.6 bits (56), Expect = 8.3
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 123 VMGLTFVAAGVSVPDALSSLAVVKEGYGDMAVSNAVGSNVFDILVCLGLPWFLQTAIIKP 182
           V  L  +A G + P+A ++ +V     GD+    AVG  V  + + LG   F+   I   
Sbjct: 478 VQNLHTLAPGGTAPNAAATASVA--FGGDV---VAVGGKVAMMPIVLGTADFMVHHIHAF 532

Query: 183 GSHVNVY--SKGLTYSTIS 199
             HV V    KG+ ++  S
Sbjct: 533 TIHVTVLILLKGVLFARSS 551


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 988,393
Number of extensions: 44183
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 4
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)