RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6736
(1023 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 899 bits (2326), Expect = 0.0
Identities = 383/552 (69%), Positives = 452/552 (81%), Gaps = 20/552 (3%)
Query: 90 RGVKAIFTAPDI-----LK-KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGL 143
+G K F +I K K+ +E L K +PAYFN S ++TKD+GTIAGL
Sbjct: 109 QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGL 168
Query: 144 NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFE 203
NVLRIINEPTAAAIAYGLDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFE
Sbjct: 169 NVLRIINEPTAAAIAYGLDKK---------GDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219
Query: 204 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLSSS 262
VK+TAGDTHLGGEDFDNR+V VQ+FKRK + KDL++N+RALRRLRT CERAKRTLSSS
Sbjct: 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS 279
Query: 263 TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 322
TQA+IEIDSLFEG+D+ +I+RARFEEL D FR T++PVEK L+DA MDK +H++VLV
Sbjct: 280 TQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLV 339
Query: 323 GGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 382
GGSTRIPKVQ L++DFFNGKE KSINPDEAVAYGAAVQAAIL G++S +VQDLLLLDVT
Sbjct: 340 GGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399
Query: 383 PLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLG 442
PLSLG+ETAGGVMT LI+RNTTIPTK++Q FTTY+DNQPGVLIQV+EGERAMTKDNNLLG
Sbjct: 400 PLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLG 459
Query: 443 KFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIER 502
KF L IPPAPRGVPQIEVTFDIDANGILNV+A +KSTGK NKITITND+GRLSK DI+R
Sbjct: 460 KFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDR 519
Query: 503 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 562
MVN+AEKYKAEDE + + AKN LE+YC++MK+T++DEK+K K+SD+++ I ++
Sbjct: 520 MVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEA 579
Query: 563 IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG-GAPGGFPGAPGAGAPPSGAP- 620
++WL+ NQLAEKEEFEHKQKE+E++CNPI+TK+YQ +G G PGG PG G P P
Sbjct: 580 LEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPA 639
Query: 621 --GAGPGPTIEE 630
GA GPT+EE
Sbjct: 640 GAGASSGPTVEE 651
Score = 686 bits (1772), Expect = 0.0
Identities = 286/390 (73%), Positives = 328/390 (84%), Gaps = 27/390 (6%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
G GE+NVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+V VQ+FKRK
Sbjct: 190 GDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRK 249
Query: 691 YK-KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNA 749
+ KDL++N+RALRRLRT CERAKRTLSSSTQA+IEIDSLFEG+D+ +I+RARFEEL
Sbjct: 250 NRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCG 309
Query: 750 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 809
D FR T++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L++DFFNGKE KSINPDE
Sbjct: 310 DYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDE 369
Query: 810 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQT 869
AVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGVMT LI+RNTTIPTK++Q
Sbjct: 370 AVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQI 429
Query: 870 FTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILN 929
FTTY+DNQPGVLIQV+EGERAMTKDNNLLGKF L IPPAPRGVPQIEVTFDIDANGI
Sbjct: 430 FTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGI-- 487
Query: 930 VTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVND 989
LNV+A +KSTGK NKITITND+GRLSK DI+RMVN+
Sbjct: 488 ------------------------LNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNE 523
Query: 990 AEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
AEKYKAEDE + + AKN LE+YC++MK+
Sbjct: 524 AEKYKAEDEANRERVEAKNGLENYCYSMKN 553
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 727 bits (1878), Expect = 0.0
Identities = 286/479 (59%), Positives = 361/479 (75%), Gaps = 23/479 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN + ++TKD+G IAGLNVLRIINEPTAAA+AYGLDKK ERNVL
Sbjct: 140 VPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLDKK----------DKERNVL 189
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL I DG+FEV +T GDTHLGGEDFDNR+V+HFV+EFK+KY DL+ +
Sbjct: 190 VFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKKYGIDLSKD 249
Query: 242 KRALRRLRTACERAKRTLSS-STQASIEIDSLFE-GVDFYTSITRARFEELNADLFRGTM 299
RAL+RLR A E+AK LSS T+ ++ + G D ++TRA+FEEL ADLF T+
Sbjct: 250 PRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEELCADLFERTL 309
Query: 300 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 359
EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L+++FF GKE +K +NPDEAVA GAA
Sbjct: 310 EPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPDEAVAIGAA 368
Query: 360 VQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDN 419
VQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK++Q F+T +DN
Sbjct: 369 VQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIFSTAADN 426
Query: 420 QPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKS 479
Q V IQVY+GER M DN LLG FEL IPPAPRGVPQIEVTFDIDANGIL V+A +K
Sbjct: 427 QTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDKG 486
Query: 480 TGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
TGKE KITIT G LS ++IERMV DAE+Y AED+K+K I AKN E Y ++++ +++
Sbjct: 487 TGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLK 545
Query: 540 DEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAICNPIITKLYQ 597
+E DK+ +A++ K + I+WL + +KEE E K +EL+ + PI ++YQ
Sbjct: 546 EE--GDKLPEADKK----KVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ 598
Score = 603 bits (1556), Expect = 0.0
Identities = 234/395 (59%), Positives = 289/395 (73%), Gaps = 32/395 (8%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ ERNVL+FDLGGGTFDVSIL I DG+FEV +T GDTHLGGEDFDNR+V+HFV+EF
Sbjct: 179 LDKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEF 238
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE-GVDFYTSITRARFE 745
K+KY DL+ + RAL+RLR A E+AK LSS T+ ++ + G D ++TRA+FE
Sbjct: 239 KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFE 298
Query: 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 805
EL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L+++FF GKE +K +
Sbjct: 299 ELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGV 357
Query: 806 NPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTK 865
NPDEAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK
Sbjct: 358 NPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTK 415
Query: 866 QTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDAN 925
++Q F+T +DNQ V IQVY+GER M DN LLG FEL IPPAPRGVPQIEVTFDIDAN
Sbjct: 416 KSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDAN 475
Query: 926 GILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIER 985
GIL V+A +K TGKE KITIT G LS ++IER
Sbjct: 476 GILTVSAKDKGTGKEQKITITASSG---------------------------LSDDEIER 508
Query: 986 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
MV DAE+Y AED+K+K I AKN E Y ++++
Sbjct: 509 MVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKS 543
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 659 bits (1703), Expect = 0.0
Identities = 266/523 (50%), Positives = 349/523 (66%), Gaps = 40/523 (7%)
Query: 101 ILK--KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAA 155
IL+ KK +ED L KV E +I PAYFN + ++TKD+G IAGL VLRIINEPTAA
Sbjct: 117 ILQKLKKDAEDYLGEKV---TEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 215
A+AYGLDKK G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG
Sbjct: 174 ALAYGLDKK-----------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGG 222
Query: 216 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FE 274
+DFD R++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFI 279
Query: 275 GVD------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 328
D +TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+
Sbjct: 280 TADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRM 339
Query: 329 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI 388
P VQ+L+++FF GKE NK +NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGI
Sbjct: 340 PAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGI 394
Query: 389 ETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTS 448
ET GGVMT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+F LT
Sbjct: 395 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTG 454
Query: 449 IPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAE 508
IPPAPRGVPQIEVTFDIDANGI++V+A +K TGKE ITIT G LS E+IERMV DAE
Sbjct: 455 IPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAE 513
Query: 509 KYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDA 568
ED+K+K ++ A+N +S + + T+++ L DK+ E+ +I ++ + L
Sbjct: 514 ANAEEDKKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEKEKIEAAIKELKEALKG 571
Query: 569 NQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPG 611
+KE + K +EL + +YQ + A G A
Sbjct: 572 E---DKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAK 611
Score = 542 bits (1400), Expect = 0.0
Identities = 207/390 (53%), Positives = 267/390 (68%), Gaps = 42/390 (10%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG+DFD R++++ EFK++
Sbjct: 183 GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENG 242
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVD------FYTSITRARFE 745
DL +K AL+RL+ A E+AK LSS+ Q I +L F D +TRA+FE
Sbjct: 243 IDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFITADASGPKHLEIKLTRAKFE 299
Query: 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 805
EL DL T+EP +++L+DA + + I +++LVGGSTR+P VQ+L+++FF GKE NK +
Sbjct: 300 ELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGV 358
Query: 806 NPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTK 865
NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK
Sbjct: 359 NPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTK 414
Query: 866 QTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDAN 925
++Q F+T +DNQP V I V +GER M DN LG+F LT IPPAPRGVPQIEVTFDIDAN
Sbjct: 415 KSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDAN 474
Query: 926 GILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIER 985
GI++V+A +K TGKE ITIT S+G LS E+IER
Sbjct: 475 GIVHVSAKDKGTGKEQSITITA--------------SSG-------------LSDEEIER 507
Query: 986 MVNDAEKYKAEDEKQKAVISAKNSLESYCF 1015
MV DAE ED+K+K ++ A+N +S +
Sbjct: 508 MVKDAEANAEEDKKRKELVEARNQADSLIY 537
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 590 bits (1523), Expect = 0.0
Identities = 262/501 (52%), Positives = 340/501 (67%), Gaps = 31/501 (6%)
Query: 104 KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160
KK +E L KV E +I PAYFN + ++TKD+G IAGL VLRIINEPTAAA+AYG
Sbjct: 119 KKDAEAYLGEKV---TEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 175
Query: 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220
LDK + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLGG+DFD
Sbjct: 176 LDK----------SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQ 225
Query: 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD--- 277
R+++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 226 RIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPK 285
Query: 278 -FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 336
++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++
Sbjct: 286 HLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVK 345
Query: 337 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT 396
DFF GKE NKS+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT
Sbjct: 346 DFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMT 400
Query: 397 ALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456
LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPRGV
Sbjct: 401 KLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGV 460
Query: 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEK 516
PQIEVTFDIDANGIL+V+A +K TGKE ITIT G LS+E+IERMV +AE ED+K
Sbjct: 461 PQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKK 519
Query: 517 QKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEE 576
+K I A+N+ +S + + T+++ DK+ E+ +I ++ + L + EE
Sbjct: 520 RKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEE 574
Query: 577 FEHKQKELEAICNPIITKLYQ 597
+ K +EL+ + +YQ
Sbjct: 575 IKAKTEELQQALQKLAEAMYQ 595
Score = 489 bits (1262), Expect = e-162
Identities = 210/393 (53%), Positives = 268/393 (68%), Gaps = 36/393 (9%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLGG+DFD R+++ EF
Sbjct: 176 LDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEF 235
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRAR 743
K++ DL+ +K AL+RL+ A E+AK LSS I + + ++TRA+
Sbjct: 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295
Query: 744 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++DFF GKE NK
Sbjct: 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNK 354
Query: 804 SINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIP 863
S+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIP
Sbjct: 355 SVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 410
Query: 864 TKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDID 923
TK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPRGVPQIEVTFDID
Sbjct: 411 TKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDID 470
Query: 924 ANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDI 983
ANGIL+V+A +K TGKE ITIT G LS+E+I
Sbjct: 471 ANGILHVSAKDKGTGKEQSITITASSG---------------------------LSEEEI 503
Query: 984 ERMVNDAEKYKAEDEKQKAVISAKNSLESYCFN 1016
ERMV +AE ED+K+K I A+N+ +S +
Sbjct: 504 ERMVKEAEANAEEDKKRKEEIEARNNADSLAYQ 536
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 553 bits (1428), Expect = 0.0
Identities = 259/496 (52%), Positives = 344/496 (69%), Gaps = 28/496 (5%)
Query: 104 KKTSEDILRKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGL 161
K+ +E L + + +I PAYFN + ++TKD+ IAGLNVLR+INEPTAAA+AYGL
Sbjct: 109 KEDAEAYL--GEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL 166
Query: 162 DKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 221
DK E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLGG+DFDN
Sbjct: 167 DKG-----------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNA 215
Query: 222 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 281
++++ V EFK K DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D
Sbjct: 216 LIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKE 275
Query: 282 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 341
+TRA+FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF G
Sbjct: 276 LTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-G 334
Query: 342 KELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKR 401
KE KSINPDEAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+R
Sbjct: 335 KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIER 390
Query: 402 NTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEV 461
NTTIP K++Q F+T +D Q V I V++GER M DN LG+FEL IPPAPRGVPQIEV
Sbjct: 391 NTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEV 450
Query: 462 TFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVI 521
TFDIDANGILNVTA + TGKE ITI G LS E+IERMV DAE A D+K + ++
Sbjct: 451 TFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELV 509
Query: 522 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQ 581
A+N ES ++++ +++ K+S+ E+ +I + D+ + L+ EKEE + K
Sbjct: 510 EARNEAESLIYSLEKALKEI---VKVSEEEKEKIEEAITDLEEALE----GEKEEIKAKI 562
Query: 582 KELEAICNPIITKLYQ 597
+EL+ + + K YQ
Sbjct: 563 EELQEVTQKLAEKKYQ 578
Score = 455 bits (1172), Expect = e-149
Identities = 209/389 (53%), Positives = 267/389 (68%), Gaps = 32/389 (8%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLGG+DFDN ++++ V EFK K
Sbjct: 169 GKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKG 228
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 751
DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D +TRA+FEEL DL
Sbjct: 229 GIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDL 288
Query: 752 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 811
T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF GKE KSINPDEAV
Sbjct: 289 LERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAV 347
Query: 812 AYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFT 871
A GAA+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+RNTTIP K++Q F+
Sbjct: 348 ALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 872 TYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 931
T +D Q V I V++GER M DN LG+FEL IPPAPRGVPQIEVTFDIDANGILNVT
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 932 AIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAE 991
A + TGKE ITI G LS E+IERMV DAE
Sbjct: 464 AKDLGTGKEQSITIKASSG---------------------------LSDEEIERMVEDAE 496
Query: 992 KYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
A D+K + ++ A+N ES ++++
Sbjct: 497 ANAALDKKFRELVEARNEAESLIYSLEKA 525
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 521 bits (1344), Expect = e-177
Identities = 214/245 (87%), Positives = 228/245 (93%), Gaps = 9/245 (3%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKK G GERNVL
Sbjct: 141 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK---------GGGERNVL 191
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK+KKD++ N
Sbjct: 192 IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGN 251
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL ADLFRGT+EP
Sbjct: 252 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCADLFRGTLEP 311
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 312 VEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 371
Query: 362 AAILH 366
AAIL
Sbjct: 372 AAILS 376
Score = 443 bits (1141), Expect = e-147
Identities = 178/193 (92%), Positives = 188/193 (97%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK
Sbjct: 184 GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRK 243
Query: 691 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL AD
Sbjct: 244 HKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCAD 303
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA
Sbjct: 304 LFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 363
Query: 811 VAYGAAVQAAILH 823
VAYGAAVQAAIL
Sbjct: 364 VAYGAAVQAAILS 376
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 520 bits (1341), Expect = e-173
Identities = 242/490 (49%), Positives = 326/490 (66%), Gaps = 26/490 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF + ++TKD+GTIAGL VLRIINEPTAAA+AYGLDK+ E+ +L
Sbjct: 140 VPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ----------DQEQLIL 189
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++ DL+ +
Sbjct: 190 VFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQD 249
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLF 295
K AL+RLR A E+AK LSS SI + F D +TRA+FEEL DL
Sbjct: 250 KMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEELTKDLV 307
Query: 296 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 355
T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NPDEAVA
Sbjct: 308 EATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVA 367
Query: 356 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 415
GAA+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++Q F+T
Sbjct: 368 LGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFST 423
Query: 416 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 475
+D Q V I V +GERAM KDN LGKF LT IPPAPRGVPQIEV+F+ID NGIL V+A
Sbjct: 424 ATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSA 483
Query: 476 IEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMK 535
++ TG+E I ITN G LS +IERM +AEKY ED ++K +I KN +S ++ +
Sbjct: 484 QDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYE 542
Query: 536 STVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKL 595
ST+++ + IS+ + + K ++ + EE + + +E + I ++
Sbjct: 543 STLKEN--GELISEELKQRAEQKVE-QLEAALTDPNISLEELKQQLEEFQQALLAIGAEV 599
Query: 596 YQGSGGAPGG 605
YQ G
Sbjct: 600 YQQGGSQTTD 609
Score = 436 bits (1123), Expect = e-141
Identities = 200/392 (51%), Positives = 261/392 (66%), Gaps = 39/392 (9%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGI 244
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEEL 747
DL+ +K AL+RLR A E+AK LSS SI + F D +TRA+FEEL
Sbjct: 245 DLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEEL 302
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NP
Sbjct: 303 TKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNP 362
Query: 808 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867
DEAVA GAA+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++
Sbjct: 363 DEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418
Query: 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGI 927
Q F+T +D Q V I V +GERAM KDN LGKF LT IPPAPRGVPQIEV+F+ID NGI
Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478
Query: 928 LNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMV 987
L V+A ++ TG+E I ITN G LS +IERM
Sbjct: 479 LKVSAQDQGTGREQSIRITN---------------------------TGGLSSNEIERMR 511
Query: 988 NDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
+AEKY ED ++K +I KN +S ++ +S
Sbjct: 512 QEAEKYAEEDRRRKQLIELKNQADSLLYSYES 543
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 519 bits (1338), Expect = e-173
Identities = 253/483 (52%), Positives = 333/483 (68%), Gaps = 28/483 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+G IAGL VLRIINEPTAA++AYGLDKK T +L
Sbjct: 142 VPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNET-----------IL 190
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+ +
Sbjct: 191 VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKD 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLFRG 297
++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 251 RQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINR 310
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA G
Sbjct: 311 CRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIG 369
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++ F+T
Sbjct: 370 AAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAV 425
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
DNQ V I V +GER + KDN LG F L IPPAPRGVPQIEVTFDIDANGIL+VTA +
Sbjct: 426 DNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKD 485
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K TGKE ITI L K+++ERMV +AEK AED++++ I KN ES C+ +
Sbjct: 486 KGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQ 544
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKELEAICNPIITKLY 596
+++ LKDKIS+ ++ +I ++IK L A Q E + +EL+ I ++Y
Sbjct: 545 LKE--LKDKISEEKKEKI----ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVY 598
Query: 597 QGS 599
+
Sbjct: 599 SST 601
Score = 434 bits (1118), Expect = e-140
Identities = 205/383 (53%), Positives = 263/383 (68%), Gaps = 36/383 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+
Sbjct: 189 ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLS 248
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLF 752
+++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 249 KDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLI 308
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA
Sbjct: 309 NRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVA 367
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAAVQA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++ F+T
Sbjct: 368 IGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFST 423
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
DNQ V I V +GER + KDN LG F L IPPAPRGVPQIEVTFDIDANGIL+VTA
Sbjct: 424 AVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTA 483
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K TGKE ITI ST L K+++ERMV +AEK
Sbjct: 484 KDKGTGKEQSITIQG-------------AST--------------LPKDEVERMVKEAEK 516
Query: 993 YKAEDEKQKAVISAKNSLESYCF 1015
AED++++ I KN ES C+
Sbjct: 517 NAAEDKEKREKIDLKNQAESLCY 539
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 516 bits (1330), Expect = e-171
Identities = 252/503 (50%), Positives = 347/503 (68%), Gaps = 30/503 (5%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L + Q +PAYFN S ++TKD+G IAGL+VLRIINEPTAAA+A+G+DK
Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
G T + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++
Sbjct: 223 NDGKT-----------IAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------ 277
N+ + EFK++ DL +K AL+RLR A E AK LSS TQ EI+ F D
Sbjct: 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKH 329
Query: 278 FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 337
++RA+ EEL DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++
Sbjct: 330 LQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKK 389
Query: 338 FFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTA 397
F GKE +K +NPDEAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV T
Sbjct: 390 IF-GKEPSKGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTR 444
Query: 398 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457
LI RNTTIPTK++Q F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRGVP
Sbjct: 445 LINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVP 504
Query: 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQ 517
QIEVTFD+DANGI+N++A++KSTGK+ +ITI + G LS E+IE+MV +AE+YK +DEK+
Sbjct: 505 QIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKK 563
Query: 518 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEF 577
K ++ AKN E+ ++++ + D LKDKISDA++ ++ K + L + + +
Sbjct: 564 KELVDAKNEAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSEDV---DSI 618
Query: 578 EHKQKELEAICNPIITKLYQGSG 600
+ K K+L+ I + Y+
Sbjct: 619 KDKTKQLQEASWKISQQAYKQGN 641
Score = 421 bits (1085), Expect = e-135
Identities = 199/390 (51%), Positives = 270/390 (69%), Gaps = 40/390 (10%)
Query: 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 694
+ + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++N+ + EFK++ D
Sbjct: 226 KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGID 285
Query: 695 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELN 748
L +K AL+RLR A E AK LSS TQ EI+ F D ++RA+ EEL
Sbjct: 286 LKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++ F GKE +K +NPD
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPD 402
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868
EAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV T LI RNTTIPTK++Q
Sbjct: 403 EAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGIL 928
F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRGVPQIEVTFD+DANGI+
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 929 NVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988
N++A++KSTGK+ +ITI + G LS E+IE+MV
Sbjct: 519 NISAVDKSTGKKQEITIQSS---------------------------GGLSDEEIEKMVK 551
Query: 989 DAEKYKAEDEKQKAVISAKNSLESYCFNMK 1018
+AE+YK +DEK+K ++ AKN E+ ++++
Sbjct: 552 EAEEYKEQDEKKKELVDAKNEAETLIYSVE 581
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 484 bits (1247), Expect = e-159
Identities = 237/513 (46%), Positives = 322/513 (62%), Gaps = 28/513 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S +TKD+G IAGL VLRIINEPTAA++AYG +KK T +L
Sbjct: 179 VPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNET-----------IL 227
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL +
Sbjct: 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKD 287
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLFRG 297
K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 288 KQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDR 347
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA G
Sbjct: 348 CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTVNPDEVVALG 406
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T +
Sbjct: 407 AAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAA 462
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
D Q V I V +GER +DN LG F L IPPAPRGVPQIEV FDIDANGIL+V+A +
Sbjct: 463 DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATD 522
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K TGK+ ITIT L K+++ERMV +AEK+ ED++++ + KN +S + +
Sbjct: 523 KGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQ 581
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAE-KEEFEHKQKELEAICNPIITKLY 596
+++ L DK+ + ++ K ++ + + + K+ +E+ I LY
Sbjct: 582 LKE--LGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQ----SLY 635
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIE 629
G G AG+ S + G I+
Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVID 668
Score = 391 bits (1005), Expect = e-123
Identities = 192/383 (50%), Positives = 252/383 (65%), Gaps = 36/383 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL
Sbjct: 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLL 285
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 752
+K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 286 KDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLL 345
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA
Sbjct: 346 DRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTVNPDEVVA 404
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAAVQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T
Sbjct: 405 LGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFST 460
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
+D Q V I V +GER +DN LG F L IPPAPRGVPQIEV FDIDANGIL+V+A
Sbjct: 461 AADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA 520
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K TGK+ ITIT ST L K+++ERMV +AEK
Sbjct: 521 TDKGTGKKQDITITG-------------AST--------------LPKDEVERMVQEAEK 553
Query: 993 YKAEDEKQKAVISAKNSLESYCF 1015
+ ED++++ + KN +S +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVY 576
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 466 bits (1201), Expect = e-152
Identities = 208/458 (45%), Positives = 294/458 (64%), Gaps = 23/458 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++T+D+G IAGL V RI+NEPTAAA+AYGLD+ S + VL
Sbjct: 142 VPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDR-----------SSSQTVL 190
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K DL +
Sbjct: 191 VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRD 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLFRG 297
++AL+RL A E+AK LS + I + + D T + R +FE L DL
Sbjct: 251 RQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDR 310
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
+ PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NPDE VA G
Sbjct: 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVG 369
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AA+QA IL G E++DLLLLDVTPLSLG+ET GGVM LI RNTTIP +++ F+T
Sbjct: 370 AAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSE 425
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
+NQ V I V++GER M DN LG+F+L+ IPPAPRGVPQ++V FDIDANGIL V+A +
Sbjct: 426 NNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATD 485
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
++TG+E +TI LS++++ RM+ +AE ED +++ I +N + +
Sbjct: 486 RTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERR 544
Query: 538 VEDEKLKDKISDAERTQ--ILDKCNDVIKWLDANQLAE 573
+ D L+ AER + + DV L+ + E
Sbjct: 545 LRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
Score = 393 bits (1013), Expect = e-124
Identities = 172/385 (44%), Positives = 243/385 (63%), Gaps = 36/385 (9%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K
Sbjct: 184 SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 747
DL +++AL+RL A E+AK LS + I + + D T + R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL + PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 808 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867
DE VA GAA+QA IL G E++DLLLLDVTPLSLG+ET GGVM LI RNTTIP +++
Sbjct: 363 DEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS 418
Query: 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGI 927
F+T +NQ V I V++GER M DN LG+F+L+ IPPAPRGVPQ++V FDIDANGI
Sbjct: 419 DVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGI 478
Query: 928 LNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMV 987
L V+A +++TG+E +TI G LS++++ RM+
Sbjct: 479 LQVSATDRTTGREQSVTI-----------------QGAST----------LSEQEVNRMI 511
Query: 988 NDAEKYKAEDEKQKAVISAKNSLES 1012
+AE ED +++ I +N +
Sbjct: 512 QEAEAKADEDRRRRERIEKRNRALT 536
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 422 bits (1087), Expect = e-136
Identities = 188/468 (40%), Positives = 281/468 (60%), Gaps = 49/468 (10%)
Query: 100 DILK--KKTSEDILRKVDGQNEGLI---PAYFNISSVKSTKDSGTIAGLNVLRIINEPTA 154
+ILK ++ +E+ L G+ +G + PAYF+ + ++TKD+ +AGLNVLR++NEPTA
Sbjct: 132 EILKALRQRAEETL---GGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTA 188
Query: 155 AAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 214
AAIAYGLD +G E + ++DLGGGTFD+SIL + G+FEV +T GD+ LG
Sbjct: 189 AAIAYGLD----------SGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALG 237
Query: 215 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 274
G+DFD+ + + ++ + L + R L A AK LS + + + +L++
Sbjct: 238 GDDFDHLLADWILE--QAGLSPRLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 275 GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 334
G ITR +F L A L + T+ ++LRDA ++ ++ ++V+VGGSTR+P V++
Sbjct: 293 G-----EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 335 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 394
+ +FF G+ SI+PD+ VA GAA+QA IL G+K + D+LLLDV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 395 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 454
+ +I RNTTIP + Q FTT+ D Q + I V +GER + D L +FEL IPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 455 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 514
G +I VTF +DA+G+L+VTA+EKSTG E I + G L+ ++I RM+ D+ + ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 515 -------EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
E++ + A+ LE+ + D L +S AER I
Sbjct: 524 MQARALAEQK---VEAERVLEAL---QAALAADGDL---LSAAERAAI 562
Score = 348 bits (896), Expect = e-108
Identities = 145/374 (38%), Positives = 217/374 (58%), Gaps = 40/374 (10%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+DFD+ + + ++ +
Sbjct: 200 EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE--QAGLSP 257
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
L + R L A AK LS + + + +L++G ITR +F L A L +
Sbjct: 258 RLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQG-----EITREQFNALIAPLVK 309
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +FF G+ SI+PD+ VA
Sbjct: 310 RTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAI 368
Query: 814 GAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTY 873
GAA+QA IL G+K + D+LLLDV PLSLG+ET GG++ +I RNTTIP + Q FTT+
Sbjct: 369 GAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTF 426
Query: 874 SDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAI 933
D Q + I V +GER + D L +FEL IPP G +I VTF +DA+G+L+VTA+
Sbjct: 427 KDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAM 486
Query: 934 EKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKY 993
EKSTG E I + S G L+ ++I RM+ D+ +
Sbjct: 487 EKSTGVEASIQVKP--------------SYG-------------LTDDEIARMLKDSMSH 519
Query: 994 KAEDEKQKAVISAK 1007
ED + +A+ K
Sbjct: 520 AEEDMQARALAEQK 533
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 409 bits (1052), Expect = e-134
Identities = 160/260 (61%), Positives = 205/260 (78%), Gaps = 10/260 (3%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN + ++TKD+GTIAGLNV+RIINEPTAAAIAYGLDK
Sbjct: 125 KEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGEDFD R++
Sbjct: 185 K----------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 234
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
HF++ FK+K+ KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G DF ++T
Sbjct: 235 EHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLT 294
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FFNGKE
Sbjct: 295 RAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKE 354
Query: 344 LNKSINPDEAVAYGAAVQAA 363
++ INPDEAVAYGAAVQA
Sbjct: 355 PSRGINPDEAVAYGAAVQAG 374
Score = 333 bits (857), Expect = e-105
Identities = 122/188 (64%), Positives = 159/188 (84%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGEDFD R++ HF++ FK+K+
Sbjct: 187 GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHG 246
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G DF ++TRA+FEELN DLF
Sbjct: 247 KDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLF 306
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FFNGKE ++ INPDEAVA
Sbjct: 307 KKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVA 366
Query: 813 YGAAVQAA 820
YGAAVQA
Sbjct: 367 YGAAVQAG 374
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 408 bits (1052), Expect = e-131
Identities = 179/406 (44%), Positives = 247/406 (60%), Gaps = 27/406 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF+ + ++TKD+ +AGLNVLR++NEPTAAA+AYGLDK + E
Sbjct: 136 VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK-----------ASEGIYA 184
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK---DL 238
++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 185 VYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQLGISA 237
Query: 239 TTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGT 298
N R L A AK L+ S+E+D +G DF +TR FE L L + T
Sbjct: 238 DLNPEDQRLLLQAARAAKEALT--DAESVEVDFTLDGKDFKGKLTRDEFEALIQPLVQKT 295
Query: 299 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 358
+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+ VA GA
Sbjct: 296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGA 354
Query: 359 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 418
A+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q FTTY D
Sbjct: 355 AIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKD 412
Query: 419 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEK 478
Q ++I V +GER + +D L +FEL IPP G +I VTF +DA+G+L V+A E+
Sbjct: 413 GQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQ 472
Query: 479 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAK 524
STG E I + G LS E+IERM+ D+ K+ ED +A+ K
Sbjct: 473 STGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYARALAEQK 517
Score = 339 bits (871), Expect = e-104
Identities = 152/377 (40%), Positives = 209/377 (55%), Gaps = 42/377 (11%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 180 EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQ 232
Query: 694 ---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
N R L A AK L+ S+E+D +G DF +TR FE L
Sbjct: 233 LGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFTLDGKDFKGKLTRDEFEALIQP 290
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
L + T+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+
Sbjct: 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQV 349
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q F
Sbjct: 350 VALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNV 930
TTY D Q ++I V +GER + +D L +FEL IPP G +I VTF +DA+G+L V
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467
Query: 931 TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDA 990
+A E+STG E I + G LS E+IERM+ D+
Sbjct: 468 SAQEQSTGVEQSIQVKPSYG---------------------------LSDEEIERMLKDS 500
Query: 991 EKYKAEDEKQKAVISAK 1007
K+ ED +A+ K
Sbjct: 501 FKHAEEDMYARALAEQK 517
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 397 bits (1022), Expect = e-126
Identities = 211/456 (46%), Positives = 307/456 (67%), Gaps = 24/456 (5%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E+ L PAYFN + ++TKD+GTIAGLNV+R++NEPTAAA+AYG+DK
Sbjct: 149 KETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDK 208
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
S + ++DLGGGTFD+S+L I G+FEVK+T GDTHLGGEDFD +
Sbjct: 209 TKDSL-----------IAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALS 257
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FY 279
++ ++EF++ DL+ + AL+R+R A E+AK LSS+ + + + + D
Sbjct: 258 DYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQ 317
Query: 280 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 339
I+R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG TR+PKV + ++ FF
Sbjct: 318 MHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF 377
Query: 340 NGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALI 399
K+ + +NPDEAVA GAA +L GD V+ L+LLDVTPLSLGIET GGV T +I
Sbjct: 378 -QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMI 432
Query: 400 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 459
+NTTIPTK++QTF+T +DNQ V I+V++GER M DN ++G+F+L IPPAPRGVPQI
Sbjct: 433 PKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQI 492
Query: 460 EVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKA 519
EVTFDIDANGI +VTA +K+TGK ITIT + G LSKE IE+M+ D+E++ D ++
Sbjct: 493 EVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRE 551
Query: 520 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
++ +N+ E+ + + + K +SDAE+ +
Sbjct: 552 LVEVRNNAETQLTTAERQLGEWKY---VSDAEKENV 584
Score = 329 bits (844), Expect = e-100
Identities = 172/380 (45%), Positives = 250/380 (65%), Gaps = 36/380 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+ ++DLGGGTFD+S+L I G+FEVK+T GDTHLGGEDFD + ++ ++EF++ DL+
Sbjct: 214 IAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLS 273
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 752
+ AL+R+R A E+AK LSS+ + + + + D I+R++FE + L
Sbjct: 274 KERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLI 333
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
++ P ++ ++DA ++ +I+D+VLVGG TR+PKV + ++ FF K+ + +NPDEAVA
Sbjct: 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVA 392
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAA +L GD V+ L+LLDVTPLSLGIET GGV T +I +NTTIPTK++QTF+T
Sbjct: 393 LGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFST 448
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
+DNQ V I+V++GER M DN ++G+F+L IPPAPRGVPQIEVTFDIDANGI +VTA
Sbjct: 449 AADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTA 508
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K+TGK ITIT + G LSKE IE+M+ D+E+
Sbjct: 509 KDKATGKTQNITITAN---------------------------GGLSKEQIEQMIRDSEQ 541
Query: 993 YKAEDEKQKAVISAKNSLES 1012
+ D ++ ++ +N+ E+
Sbjct: 542 HAEADRVKRELVEVRNNAET 561
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 331 bits (851), Expect = e-104
Identities = 123/242 (50%), Positives = 167/242 (69%), Gaps = 10/242 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN + ++TK++ IAGLNV+R+INEPTAAA+AYGLDKK R +L
Sbjct: 138 VPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK---------DEKGRTIL 188
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK K DL +
Sbjct: 189 VFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLD 248
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL L T++
Sbjct: 249 PRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDL 308
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PDEAVA GAA+
Sbjct: 309 VERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPDEAVALGAAIY 367
Query: 362 AA 363
AA
Sbjct: 368 AA 369
Score = 275 bits (705), Expect = 1e-83
Identities = 94/192 (48%), Positives = 131/192 (68%), Gaps = 1/192 (0%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
++ R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK
Sbjct: 179 KKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFK 238
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
K DL + RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL
Sbjct: 239 EKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELI 298
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
L T++ VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PD
Sbjct: 299 RPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPD 357
Query: 809 EAVAYGAAVQAA 820
EAVA GAA+ AA
Sbjct: 358 EAVALGAAIYAA 369
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 324 bits (832), Expect = e-102
Identities = 141/274 (51%), Positives = 188/274 (68%), Gaps = 24/274 (8%)
Query: 101 ILKK--KTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAA 155
IL+K + +E L KV E +I PAYFN S ++TKD+G IAGL VLRIINEPTAA
Sbjct: 118 ILQKLKEDAEAYLGEKV---TEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 174
Query: 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 215
A+AYGLDKK G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG
Sbjct: 175 ALAYGLDKK-----------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGG 223
Query: 216 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 275
+DFD R+++ V+EFK++ DL +K AL+RL+ A E+AK LSS T+ I + +
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 276 VD----FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 331
++TRA+FEEL DL T+EPV+++L+DAK+ + I +++LVGGSTRIP V
Sbjct: 284 ATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAV 343
Query: 332 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365
Q+L+++ F GKE NK +NPDE VA GAA+Q +L
Sbjct: 344 QELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 251 bits (642), Expect = 8e-75
Identities = 99/194 (51%), Positives = 138/194 (71%), Gaps = 5/194 (2%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG+DFD R+++ V+EFK++
Sbjct: 184 GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEG 243
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELN 748
DL +K AL+RL+ A E+AK LSS T+ I + + ++TRA+FEEL
Sbjct: 244 IDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEELT 303
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
DL T+EPV+++L+DAK+ + I +++LVGGSTRIP VQ+L+++ F GKE NK +NPD
Sbjct: 304 EDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEPNKGVNPD 362
Query: 809 EAVAYGAAVQAAIL 822
E VA GAA+Q +L
Sbjct: 363 EVVAIGAAIQGGVL 376
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 298 bits (765), Expect = 3e-92
Identities = 135/266 (50%), Positives = 180/266 (67%), Gaps = 16/266 (6%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+G IAGLNVLR+INEPTAAA+AYGLDK
Sbjct: 124 KETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDK 183
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGEDFDN ++
Sbjct: 184 KDDKV-----------IAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALL 232
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FY 279
H V+EFK++ DLT + AL+RLR A E+AK LSSS Q I + +
Sbjct: 233 RHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLN 292
Query: 280 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 339
+TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F
Sbjct: 293 MKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF 352
Query: 340 NGKELNKSINPDEAVAYGAAVQAAIL 365
GKE +K +NPDEAVA GAA+Q +L
Sbjct: 353 -GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 229 bits (585), Expect = 8e-67
Identities = 97/195 (49%), Positives = 136/195 (69%), Gaps = 5/195 (2%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
++ + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGEDFDN ++ H V+EFK++
Sbjct: 184 KDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQ 243
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 747
DLT + AL+RLR A E+AK LSSS Q I + + +TRA+FE L
Sbjct: 244 GIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKFESL 303
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F GKE +K +NP
Sbjct: 304 VGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GKEPSKGVNP 362
Query: 808 DEAVAYGAAVQAAIL 822
DEAVA GAA+Q +L
Sbjct: 363 DEAVAIGAAIQGGVL 377
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 281 bits (721), Expect = 4e-86
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 11/262 (4%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
KKT+E L K + +PAYFN S ++TKD+GT+AGL VLRIINEPTAAA+AYG+DK
Sbjct: 123 KKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDK 182
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGEDFDN +V
Sbjct: 183 R----------KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIV 232
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
+ ++EFKRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L +IT
Sbjct: 233 QYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITIT 292
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
R FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q+ F GK+
Sbjct: 293 RREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKK 351
Query: 344 LNKSINPDEAVAYGAAVQAAIL 365
+KS+NPDEAVA GAA+Q +IL
Sbjct: 352 PSKSVNPDEAVALGAAIQGSIL 373
Score = 217 bits (555), Expect = 8e-63
Identities = 99/195 (50%), Positives = 143/195 (73%), Gaps = 1/195 (0%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
I++ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGEDFDN +V + ++EF
Sbjct: 180 IDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
KRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L +ITR FE+L
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQL 299
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
+ + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q+ F GK+ +KS+NP
Sbjct: 300 RKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKKPSKSVNP 358
Query: 808 DEAVAYGAAVQAAIL 822
DEAVA GAA+Q +IL
Sbjct: 359 DEAVALGAAIQGSIL 373
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 261 bits (670), Expect = 3e-79
Identities = 107/242 (44%), Positives = 148/242 (61%), Gaps = 16/242 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN K+TK +G +AGL V R+INEPTAAA+AYGL K E L
Sbjct: 114 VPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK----------DEETKFL 163
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGEDF + F++ K +
Sbjct: 164 VFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLK--KHGLDFEKLDP 221
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L RL A ERAKR LS +A + + EG + ++TR FEE+ L +P
Sbjct: 222 SE-LARLLRAAERAKRALSDQEEAEMSVR--IEGEELEYTLTREEFEEICQPLLERLRQP 278
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+E++LRDA++ + I +I+LVGG+TR+P V+KL+ F G+ +NPDE VA GAA+Q
Sbjct: 279 IERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQ 337
Query: 362 AA 363
A
Sbjct: 338 AG 339
Score = 202 bits (516), Expect = 9e-58
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 6/187 (3%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E L+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGEDF + F++ K
Sbjct: 159 ETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLK--KHGLDF 216
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
+ L RL A ERAKR LS +A + + EG + ++TR FEE+ L
Sbjct: 217 EKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEGEELEYTLTREEFEEICQPLLE 273
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
+P+E++LRDA++ + I +I+LVGG+TR+P V+KL+ F G+ +NPDE VA
Sbjct: 274 RLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF-GRFPLVHLNPDEVVAL 332
Query: 814 GAAVQAA 820
GAA+QA
Sbjct: 333 GAAIQAG 339
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 269 bits (690), Expect = 4e-79
Identities = 169/482 (35%), Positives = 254/482 (52%), Gaps = 46/482 (9%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PA+FN ++ + IAG VLR+I EPTAAA AYGL+K L
Sbjct: 148 VPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK--NQKGC---------YL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++DLGGGTFDVSIL I++GIF+V +T GD LGG D D + + +F DL +
Sbjct: 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF------DLPNS 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L+ ++AK TL+ + S D++ SI + E+L L T+
Sbjct: 251 IDTLQ----LAKKAKETLTY--KDSFNNDNI--------SINKQTLEQLILPLVERTINI 296
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
++ L A I ++LVGG+TRIP ++ L F L+ I+PD+AV +GAA+Q
Sbjct: 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAVVWGAALQ 353
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
A L + LL+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ
Sbjct: 354 AENL----IAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQT 409
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
G+ + +GER M D L +FEL +PP G + EVTF IDA+GIL+V+A EK +
Sbjct: 410 GIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISN 469
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
+ I + + G + K +I+ M+ +A K D + + A E+ FN++ +
Sbjct: 470 TSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAI--A 526
Query: 542 KLKDKISDAERTQI---LDKCNDVIKWLDANQLAEK-EEFEHK-QKELEAICNPIITKLY 596
+L +S++E + I LD + + D + +EF+ K +K ++ N II L
Sbjct: 527 ELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLL 586
Query: 597 QG 598
+G
Sbjct: 587 KG 588
Score = 217 bits (554), Expect = 2e-60
Identities = 132/362 (36%), Positives = 195/362 (53%), Gaps = 33/362 (9%)
Query: 638 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 697
L++DLGGGTFDVSIL I++GIF+V +T GD LGG D D + + +F DL
Sbjct: 196 LVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF------DLPN 249
Query: 698 NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTME 757
+ L+ ++AK TL+ + S D++ SI + E+L L T+
Sbjct: 250 SIDTLQ----LAKKAKETLTY--KDSFNNDNI--------SINKQTLEQLILPLVERTIN 295
Query: 758 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 817
++ L A I ++LVGG+TRIP ++ L F L+ I+PD+AV +GAA+
Sbjct: 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAVVWGAAL 352
Query: 818 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 877
QA L + LL+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ
Sbjct: 353 QAENL----IAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQ 408
Query: 878 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 937
G+ + +GER M D L +FEL +PP G + EVTF IDA+GIL+V+A EK +
Sbjct: 409 TGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKIS 468
Query: 938 GKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDI---ERMVNDAEKYK 994
+ I + + G + + ++ K KI T RL +E + E ++ + E+
Sbjct: 469 NTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTT---RLLQEAVIEAEALIFNIERAI 525
Query: 995 AE 996
AE
Sbjct: 526 AE 527
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 251 bits (644), Expect = 2e-75
Identities = 105/241 (43%), Positives = 144/241 (59%), Gaps = 22/241 (9%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF+ + ++TKD+ +AGLNVLR++NEPTAAA+AYGLDKK E
Sbjct: 136 VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK-----------EGIYA 184
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + + +KY +
Sbjct: 185 VYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL----KKYGLKSLIS 240
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L +AK LS + + +E+ G DF +ITR FE+L L + T+
Sbjct: 241 DEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKLIDPLVKKTLNI 294
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+++LRDA + I ++LVGGSTRIP VQ+ + FF K L INPDE VA GAA+Q
Sbjct: 295 CKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVVAIGAALQ 353
Query: 362 A 362
A
Sbjct: 354 A 354
Score = 185 bits (473), Expect = 7e-52
Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + +
Sbjct: 175 LDKKK-EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL--- 230
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+KY + L +AK LS + + +E+ G DF +ITR FE+L
Sbjct: 231 -KKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKL 283
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
L + T+ +++LRDA + I ++LVGGSTRIP VQ+ + FF K L INP
Sbjct: 284 IDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINP 342
Query: 808 DEAVAYGAAVQA 819
DE VA GAA+QA
Sbjct: 343 DEVVAIGAALQA 354
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 247 bits (633), Expect = 2e-73
Identities = 108/244 (44%), Positives = 149/244 (61%), Gaps = 6/244 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P+YF + ++ D+ IAGLN LR++NE TA A+AYG+ K RNV
Sbjct: 143 VPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIYKTD-----LPEEEKPRNVA 197
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G + VSI+ G +V STA D +LGG DFD + HF +EFK KYK D+ +N
Sbjct: 198 FVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSN 257
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A RL ACE+ K+ LS++T+A + I+ L E D I R FEEL A L EP
Sbjct: 258 PKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEP 317
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+EK+L +A + K IH + +VGGSTRIP V++L+ F GKEL+ ++N DEAVA G A+Q
Sbjct: 318 LEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARGCALQ 376
Query: 362 AAIL 365
A+L
Sbjct: 377 CAML 380
Score = 205 bits (523), Expect = 3e-58
Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 694
RNV D+G + VSI+ G +V STA D +LGG DFD + HF +EFK KYK D
Sbjct: 194 RNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKID 253
Query: 695 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG 754
+ +N +A RL ACE+ K+ LS++T+A + I+ L E D I R FEEL A L
Sbjct: 254 VLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLER 313
Query: 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 814
EP+EK+L +A + K IH + +VGGSTRIP V++L+ F GKEL+ ++N DEAVA G
Sbjct: 314 VEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARG 372
Query: 815 AAVQAAIL 822
A+Q A+L
Sbjct: 373 CALQCAML 380
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 234 bits (600), Expect = 5e-69
Identities = 105/242 (43%), Positives = 157/242 (64%), Gaps = 8/242 (3%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P YF+ + +++ AG NVLRII+EP+AAA+AYG+ G + G+ VL
Sbjct: 142 VPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI----GQDSPT----GKSYVL 193
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K+D+ N
Sbjct: 194 VYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWKQDVRGN 253
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF +EP
Sbjct: 254 ARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLFPKCLEP 313
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A GAA Q
Sbjct: 314 IEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIAIGAAKQ 373
Query: 362 AA 363
A
Sbjct: 374 AG 375
Score = 202 bits (515), Expect = 3e-57
Identities = 85/188 (45%), Positives = 126/188 (67%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G+ VL++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K
Sbjct: 188 GKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWK 247
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
+D+ N RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF
Sbjct: 248 QDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLF 307
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
+EP+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A
Sbjct: 308 PKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIA 367
Query: 813 YGAAVQAA 820
GAA QA
Sbjct: 368 IGAAKQAG 375
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 222 bits (569), Expect = 2e-64
Identities = 95/254 (37%), Positives = 147/254 (57%), Gaps = 19/254 (7%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P YF + ++ D+ +AGLNVL ++N+ TAAA+ Y LD++ + + + VL
Sbjct: 142 VPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRR-------FENNKPQYVL 194
Query: 182 IFDLGGGTFDVSILTI----------EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 231
+D+G G+ +++ EV D LGG +FD R+ +H +EF+
Sbjct: 195 FYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLAKEFE 254
Query: 232 RKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEE 289
K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF T ITRA FEE
Sbjct: 255 EKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDFKTKITRAEFEE 314
Query: 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 349
L ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L + K+L K +N
Sbjct: 315 LCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLGKHLN 374
Query: 350 PDEAVAYGAAVQAA 363
DEA A GAA AA
Sbjct: 375 ADEAAAMGAAYYAA 388
Score = 186 bits (475), Expect = 1e-51
Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTI----------EDGIFEVKSTAGDTHLGGEDFDN 677
E + + VL +D+G G+ +++ EV D LGG +FD
Sbjct: 184 RFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDL 243
Query: 678 RMVNHFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF 735
R+ +H +EF+ K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF
Sbjct: 244 RLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDF 303
Query: 736 YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 795
T ITRA FEEL ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L +
Sbjct: 304 KTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEA 363
Query: 796 FNGKELNKSINPDEAVAYGAAVQAA 820
K+L K +N DEA A GAA AA
Sbjct: 364 VGKKKLGKHLNADEAAAMGAAYYAA 388
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 221 bits (566), Expect = 9e-64
Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 17/251 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PA F+ +T + +AGL VLR+INEPTAAA+AYGL KK V NVL
Sbjct: 165 VPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALAYGLHKKQD---VF-------NVL 214
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K N
Sbjct: 215 VVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVPD-N 273
Query: 242 KRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNADLFR 296
K ++RLR A E AK TL ST S+ + L EG V F +TR FE LN DLF+
Sbjct: 274 KEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQ 333
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 356
+ P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ AV
Sbjct: 334 KILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELAVVT 392
Query: 357 GAAVQAAILHG 367
G A+QA I+ G
Sbjct: 393 GVAIQAGIIGG 403
Score = 178 bits (452), Expect = 2e-48
Identities = 86/194 (44%), Positives = 124/194 (63%), Gaps = 7/194 (3%)
Query: 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 695
NVL+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K
Sbjct: 212 NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVP 271
Query: 696 TTNKRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNAD 750
NK ++RLR A E AK TL ST S+ + L EG V F +TR FE LN D
Sbjct: 272 D-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNED 330
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LF+ + P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ A
Sbjct: 331 LFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELA 389
Query: 811 VAYGAAVQAAILHG 824
V G A+QA I+ G
Sbjct: 390 VVTGVAIQAGIIGG 403
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 204 bits (520), Expect = 8e-58
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 21/297 (7%)
Query: 81 KAVSAQELSRGVKAIFTAPDILK------KKTSEDIL-RKVDGQNEGLIPAYFNISSVKS 133
V +E + I T ++ K+ +ED L +KV G +P +F+ ++
Sbjct: 97 GTVQEKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLS-VPTWFSDEQTEA 155
Query: 134 TKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193
+ AGL VL++I EP AA +AY + A +RNV++ D GG DVS
Sbjct: 156 LVKAAEAAGLPVLQLIPEPAAALLAYDAGEPTEDEA------LDRNVVVADFGGTRTDVS 209
Query: 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACE 253
++ + G++ + +TA D LGG+ D+ +V HF +EF +K K D TN RAL +LR E
Sbjct: 210 VIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESE 269
Query: 254 RAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDK 313
K+TLS+ST A+ ++SL EG+DF++SI R RFE L + +FR V ++ A +D
Sbjct: 270 ITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDA 329
Query: 314 AQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 363
I +++LVGG+ PK+ L F ++K+++P E VA G A+QA+
Sbjct: 330 LDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 178 bits (453), Expect = 7e-49
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 7/199 (3%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
E+ + +RNV++ D GG DVS++ + G++ + +TA D LGG+ D+ +V HF +EF
Sbjct: 188 EDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFT 247
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
+K K D TN RAL +LR E K+TLS+ST A+ ++SL EG+DF++SI R RFE L
Sbjct: 248 KKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLA 307
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------EL 801
+ +FR V ++ A +D I +++LVGG+ PK+ L F +
Sbjct: 308 SAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITV 367
Query: 802 NKSINPDEAVAYGAAVQAA 820
+K+++P E VA G A+QA+
Sbjct: 368 SKALDPSELVARGCAIQAS 386
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 189 bits (480), Expect = 1e-52
Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 5/242 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P ++ + D+ IAGLN +RI+N+ TAA ++YG+ K T + R V
Sbjct: 141 VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFK----TDLPEGEEKPRIVA 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KYK D+ N
Sbjct: 197 FVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIREN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L EP
Sbjct: 257 PKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
V K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GAA
Sbjct: 317 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFI 375
Query: 362 AA 363
A
Sbjct: 376 CA 377
Score = 160 bits (406), Expect = 7e-43
Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 1/193 (0%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
E R V D+G ++ SI+ + G +V TA D H GG DFD + HF EF
Sbjct: 186 PEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEF 245
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
K KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL
Sbjct: 246 KTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEEL 305
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N
Sbjct: 306 VKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQ 364
Query: 808 DEAVAYGAAVQAA 820
DEA+A GAA A
Sbjct: 365 DEAIAKGAAFICA 377
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 186 bits (474), Expect = 8e-52
Identities = 99/263 (37%), Positives = 152/263 (57%), Gaps = 6/263 (2%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L+K +P ++ + +S D+ IAGLN LR++NE TA A+AYG+ K
Sbjct: 125 KETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ E RNV+ D+G + VS+ G +V +TA DT LGG FD +V
Sbjct: 185 QDLPALEE----KPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSI 282
N+F +EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+ +D ++
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 342
R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF GK
Sbjct: 301 NRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GK 359
Query: 343 ELNKSINPDEAVAYGAAVQAAIL 365
E++ ++N DEAVA G A+Q AIL
Sbjct: 360 EVSTTLNADEAVARGCALQCAIL 382
Score = 152 bits (385), Expect = 6e-40
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P +EE RNV+ D+G + VS+ G +V +TA DT LGG FD +VN+F +
Sbjct: 188 PALEEKP--RNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVNYFCE 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+ +D ++ R +F
Sbjct: 246 EFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTMNRGKF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF GKE++ +
Sbjct: 306 LEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GKEVSTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 172 bits (436), Expect = 8e-47
Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 19/272 (6%)
Query: 97 TAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAA 156
TA + LKK ++ ++ +P++F + +S D+ I GLN LR++N+ TA A
Sbjct: 127 TAENNLKKPVTDCVIS---------VPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVA 177
Query: 157 IAYGLDKKVGSTAVEYNGSGE--RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 214
+ YG+ K+ + E R V+ D+G F VS G +V TA D LG
Sbjct: 178 LNYGIYKQ------DLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLG 231
Query: 215 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLF 273
G++FD ++V HF EFK KYK D + RAL RL CE+ K+ +SS ST + I+
Sbjct: 232 GKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFM 291
Query: 274 EGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 333
D + R++FEEL ADL + P+ L + + + +VGG+TRIP V++
Sbjct: 292 NDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKE 351
Query: 334 LLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365
+ FF GK+++ ++N DEAVA G A+Q AIL
Sbjct: 352 RIAKFF-GKDVSTTLNADEAVARGCALQCAIL 382
Score = 142 bits (358), Expect = 2e-36
Identities = 77/198 (38%), Positives = 112/198 (56%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P+++E R V+ D+G F VS G +V TA D LGG++FD ++V HF
Sbjct: 188 PSLDEKP--RIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCA 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EFK KYK D + RAL RL CE+ K+ +SS ST + I+ D + R++F
Sbjct: 246 EFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
EEL ADL + P+ L + + + +VGG+TRIP V++ + FF GK+++ +
Sbjct: 306 EELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDVSTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 170 bits (432), Expect = 3e-46
Identities = 96/263 (36%), Positives = 153/263 (58%), Gaps = 6/263 (2%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+TSE+ L+K IP++F + +S + +AGLN LR++NE TA A+AYG+ K
Sbjct: 125 KETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ E RNV+ D+G + VS+ G +V +T D +LGG +FD +V
Sbjct: 185 QDLPALDE----KPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSI 282
++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D + +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKM 300
Query: 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 342
RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF K
Sbjct: 301 NRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL-K 359
Query: 343 ELNKSINPDEAVAYGAAVQAAIL 365
+++ ++N DEAVA G A+Q AIL
Sbjct: 360 DISTTLNADEAVARGCALQCAIL 382
Score = 137 bits (346), Expect = 7e-35
Identities = 72/198 (36%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P ++E RNV+ D+G + VS+ G +V +T D +LGG +FD +V++F
Sbjct: 188 PALDEKP--RNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCD 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D + + RA+F
Sbjct: 246 EFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF K+++ +
Sbjct: 306 EQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL-KDISTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 80.3 bits (199), Expect = 1e-15
Identities = 71/287 (24%), Positives = 97/287 (33%), Gaps = 84/287 (29%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AG + EP AAA+ Y E + E VL+ D+GGGT D S++ +
Sbjct: 149 AGFKDVEFQYEPIAAALDY-----------EQRLTREELVLVVDIGGGTSDFSLVRLGPS 197
Query: 201 IFEVKSTAGDT------HLGGEDFDNRMVNHFV----------QEFK------RKYKKDL 238
D +GG DFD R+ H V + Y DL
Sbjct: 198 RRGRADRRADILAHSGVRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADL 257
Query: 239 TT------------------------NKRALRRLRT------------ACERAKRTLSSS 262
T L RL T A E AK LSS
Sbjct: 258 ATWHKINFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQ 317
Query: 263 TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 322
+ I++D F V +TRA FE A V+++L A + I + L
Sbjct: 318 DETRIDLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLT 375
Query: 323 GGSTRIPKVQKLLQDFF------NGKELNKSINPDEAVAYGAAVQAA 363
GGS+ +P V++ F G +VA G A+ AA
Sbjct: 376 GGSSLVPAVRQAFAARFPAARIVEGDAF-------GSVASGLALAAA 415
Score = 72.6 bits (179), Expect = 3e-13
Identities = 62/253 (24%), Positives = 86/253 (33%), Gaps = 73/253 (28%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT------HLGGEDFDNRMVNHFV- 684
+ E VL+ D+GGGT D S++ + D +GG DFD R+ H V
Sbjct: 172 TREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGVRIGGTDFDRRLSLHAVM 231
Query: 685 ---------QEFK------RKYKKDLTT------------------------NKRALRRL 705
+ Y DL T L RL
Sbjct: 232 PLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRELARDAVEPELLERL 291
Query: 706 RT------------ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
T A E AK LSS + I++D F V +TRA FE A
Sbjct: 292 ITVIEEELGHRLARAVEAAKIALSSQDETRIDLD--FVEVGLEAPVTRAEFEGAIAPDLE 349
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF------NGKELNKSINP 807
V+++L A + I + L GGS+ +P V++ F G
Sbjct: 350 RIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAF------ 403
Query: 808 DEAVAYGAAVQAA 820
+VA G A+ AA
Sbjct: 404 -GSVASGLALAAA 415
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 55.9 bits (136), Expect = 4e-08
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 55/255 (21%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERN 179
+P+ I+ V ++ D+ AG + +I EP AAAI GLD E G+
Sbjct: 97 VPS--GITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD------IFEPKGN---- 144
Query: 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 239
++ D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 145 -MVVDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN---- 190
Query: 240 TNKRALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 295
L RTA E K + S+ E +G D T + R E+ ++
Sbjct: 191 --------LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEV 239
Query: 296 RGTM-EPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQDFFNGKEL 344
R + EP+++ + K ++K A I D IVL GG + + +L+ + G +
Sbjct: 240 REALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPV 298
Query: 345 NKSINPDEAVAYGAA 359
+ +P VA GA
Sbjct: 299 RVAEDPLTCVAKGAG 313
Score = 44.3 bits (106), Expect = 2e-04
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 55/221 (24%)
Query: 611 GAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 670
GAG G ++ D+GGGT +++++++ GI KS +
Sbjct: 133 GAGLDIFEPKG---------------NMVVDIGGGTTEIAVISL-GGIVVSKS----IRV 172
Query: 671 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL----RTACERAKRTLSSSTQASIEI 726
GG+DFD ++ + +RKY L RTA E K + S+ E
Sbjct: 173 GGDDFDEAIIRY----VRRKYN------------LLIGERTA-EEIKIEIGSAYPLDEEE 215
Query: 727 DSLFEGVDFYTSITRARFEELNADLFRGTM-EPVEKSLRDAK--MDK------AQIHD-- 775
+G D T + R E+ ++ R + EP+++ + K ++K A I D
Sbjct: 216 TMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDEIVEAIKSVLEKTPPELAADILDRG 273
Query: 776 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 816
IVL GG + + +L+ + G + + +P VA GA
Sbjct: 274 IVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCVAKGAG 313
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 52.3 bits (126), Expect = 9e-07
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 39/238 (16%)
Query: 146 LRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGI-FEV 204
L I+ EP AAA+ Y L + S ++ G+ L+ D GGGT D+++ + +
Sbjct: 178 LLIVLEPEAAAL-YCLKLLLISLNLK---PGDG-FLVCDAGGGTVDLTVYEVTSVEPLRL 232
Query: 205 K-STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT----NKRALRRLRTACERAKRTL 259
K AG L G F +R F + K + + + L E KR+
Sbjct: 233 KELAAGSGGLCGSTFVDR---AFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSF 289
Query: 260 SSSTQASIEIDSLFEGVDFYTSITRARFEELN----------ADLFRGTMEPVEKSLRDA 309
+ I S N LF +E + + +
Sbjct: 290 GGTDN-DTNIVLPGS---LALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE- 344
Query: 310 KMDKAQIHD----IVLVGGSTRIPKVQKLLQDFFNGKELNKSI----NPDEAVAYGAA 359
++++A+ D I LVGG P ++ L++ F + +P AV GA
Sbjct: 345 QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
Score = 45.7 bits (109), Expect = 9e-05
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 37/217 (17%)
Query: 624 PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGI-FEVK-STAGDTHLGGEDFDNRMVN 681
++ G G L+ D GGGT D+++ + +K AG L G F +R
Sbjct: 197 ISLNLKPGDG---FLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGSGGLCGSTFVDR--- 250
Query: 682 HFVQEFKRKYKKDLTT----NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 737
F + K + + + L E KR+ + I
Sbjct: 251 AFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDN-DTNIVLPGS---LAL 306
Query: 738 SITRARFEELN----------ADLFRGTMEPVEKSLRDAKMDKAQIHD----IVLVGGST 783
S N LF +E + + + ++++A+ D I LVGG
Sbjct: 307 SKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYIFLVGGFG 365
Query: 784 RIPKVQKLLQDFFNGKELNKSI----NPDEAVAYGAA 816
P ++ L++ F + +P AV GA
Sbjct: 366 ESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 49.4 bits (119), Expect = 6e-06
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 67/261 (25%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLD--KKVGSTAVEYNGSGE 177
+P+ I+ V ++ +++ AG + +I EP AAAI GL + VG+
Sbjct: 107 VPS--GITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGN---------- 154
Query: 178 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 237
++ D+GGGT +V+++++ GI +S + G++ D +V + +RKY
Sbjct: 155 ---MVVDIGGGTTEVAVISL-GGIVYSESIR----VAGDEMDEAIVQY----VRRKYN-- 200
Query: 238 LTTNKRALRRL----RTACERAKRTLSSSTQA----SIEIDSLFEGVDFYTSITRARFEE 289
L RTA E K + S+ S+E+ G D T + + E
Sbjct: 201 ----------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTGLPKTI--E 243
Query: 290 LNADLFRGTMEP--------VEKSLRDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQDF 338
++++ R + V+ L + A I D IVL GG + + KLL +
Sbjct: 244 ISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303
Query: 339 FNGKELNKSINPDEAVAYGAA 359
G ++ + +P VA G
Sbjct: 304 T-GLPVHIAEDPLTCVARGTG 323
Score = 34.7 bits (81), Expect = 0.20
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 63/236 (26%)
Query: 609 APGAGA--------PPSGAPGAG-PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIF 659
A AGA P + A GAG P + E G ++ D+GGGT +V+++++ GI
Sbjct: 123 AEHAGAREVYLIEEPMAAAIGAGLP---VTEPVGN---MVVDIGGGTTEVAVISL-GGIV 175
Query: 660 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL----RTACERAKRT 715
+S + G++ D +V + +RKY L RTA E K
Sbjct: 176 YSESIR----VAGDEMDEAIVQY----VRRKYN------------LLIGERTA-EEIKIE 214
Query: 716 LSSSTQA----SIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP--------VEKSL 763
+ S+ S+E+ G D T + + E++++ R + V+ L
Sbjct: 215 IGSAYPLDEEESMEV----RGRDLVTGLPKTI--EISSEEVREALAEPLQQIVEAVKSVL 268
Query: 764 RDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 816
+ A I D IVL GG + + KLL + G ++ + +P VA G
Sbjct: 269 EKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTG 323
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 48.8 bits (117), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 292 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 347 SINPDEAVAYGAAVQAAILHGDKS 370
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
Score = 48.8 bits (117), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 749 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 804 SINPDEAVAYGAAVQAAILHGDKS 827
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 43.4 bits (103), Expect = 5e-04
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 24/116 (20%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERN 179
IP I+SV ++ +++ AG + +I EP AAAI GLD + +G+
Sbjct: 102 IPT--GITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD------ISQPSGN---- 149
Query: 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
++ D+GGGT D+++L++ GI S + G+ FD ++ + ++KYK
Sbjct: 150 -MVVDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
Score = 31.8 bits (73), Expect = 1.7
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 623 GPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 682
G G I + SG ++ D+GGGT D+++L++ GI S + G+ FD ++ +
Sbjct: 138 GAGLDISQPSGN---MVVDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY 189
Query: 683 FVQEFKRKYK 692
++KYK
Sbjct: 190 ----IRKKYK 195
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 41.8 bits (98), Expect = 0.001
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AGL VL +++EPTAAA LD + + D+GGGT +SI+
Sbjct: 119 AGLEVLHVLDEPTAAADVLQLD----------------DGGVVDIGGGTTGISIVKKGKV 162
Query: 201 IFEVKSTAGDTHL 213
I+ G TH+
Sbjct: 163 IYSADEPTGGTHM 175
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 41.3 bits (97), Expect = 0.001
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AG+ VL +++EPTAAA + N + D+GGGT +SIL
Sbjct: 87 AGIEVLHVLDEPTAAAAVLQIK----------------NGAVVDVGGGTTGISILKKGKV 130
Query: 201 IFEVKSTAGDTHL 213
I+ G TH+
Sbjct: 131 IYSADEPTGGTHM 143
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 347 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 382
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 749 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 804 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 839
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies).
Members of this family belong to the collagen
superfamily. Collagens are generally extracellular
structural proteins involved in formation of connective
tissue structure. The alignment contains 20 copies of
the G-X-Y repeat that forms a triple helix. The first
position of the repeat is glycine, the second and third
positions can be any residue but are frequently proline
and hydroxyproline. Collagens are post translationally
modified by proline hydroxylase to form the
hydroxyproline residues. Defective hydroxylation is the
cause of scurvy. Some members of the collagen
superfamily are not involved in connective tissue
structure but share the same triple helical structure.
Length = 60
Score = 37.5 bits (88), Expect = 0.002
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 597 QGSGGAPG--GFPGAPGA----GAP-PSGAPGAGPGP 626
G G PG G PG PG G P P GAPGA PGP
Sbjct: 24 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGA-PGP 59
Score = 35.2 bits (82), Expect = 0.009
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 597 QGSGGAPG-----GFPGAPGAGAP--PSGAPGAGPGP 626
G G PG G PG PG P P G PG PGP
Sbjct: 6 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGP-PGP 41
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 39.8 bits (94), Expect = 0.004
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 30/91 (32%)
Query: 133 STKDSGTI------AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLG 186
S D I AGL V +++EPTAAA G+D NG+ + D+G
Sbjct: 100 SEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----------NGA------VVDIG 143
Query: 187 GGTFDVSILTIEDGIFEVKSTA----GDTHL 213
GGT +SIL +DG +V +A G TH+
Sbjct: 144 GGTTGISIL--KDG--KVVYSADEPTGGTHM 170
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 39.7 bits (93), Expect = 0.006
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 20/103 (19%)
Query: 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFD 191
++ K+S AG + +I EP AAAI GL + E GS ++ D+GGGT +
Sbjct: 115 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVE------EPTGS-----MVVDIGGGTTE 163
Query: 192 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 234
V+++++ GI +S +GG++FD ++N+ +R Y
Sbjct: 164 VAVISL-GGIVVSRS----IRVGGDEFDEAIINY----IRRTY 197
Score = 31.2 bits (71), Expect = 2.8
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 24/92 (26%)
Query: 609 APGAGA--------PPSGAPGAG-PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIF 659
A AGA P + A GAG P +EE +G ++ D+GGGT +V+++++ GI
Sbjct: 121 ALSAGAREVYLIEEPMAAAIGAGLP---VEEPTGS---MVVDIGGGTTEVAVISL-GGIV 173
Query: 660 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
+S +GG++FD ++N+ +R Y
Sbjct: 174 VSRS----IRVGGDEFDEAIINY----IRRTY 197
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 39.8 bits (94), Expect = 0.008
Identities = 24/118 (20%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 497 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKL--KDKISDAE--- 551
+E+ +R++ +A+K +AE K++A++ AK + +++ E E ++++ E
Sbjct: 37 EEEAKRILEEAKK-EAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL 91
Query: 552 ---------RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600
+ ++L+K + ++ + +++E E K++ELE + + +L + SG
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 38.7 bits (91), Expect = 0.013
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 24/103 (23%)
Query: 135 KDSGTIAGLNVLRIINEPTAAAIAYGLD--KKVGSTAVEYNGSGERNVLIFDLGGGTFDV 192
K++ AG + +I EP AAAI GL + G+ ++ D+GGGT +V
Sbjct: 113 KEAAKNAGAREVFLIEEPMAAAIGAGLPVEEPTGN-------------MVVDIGGGTTEV 159
Query: 193 SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
+++++ GI KS + G++ D ++ + ++KY
Sbjct: 160 AVISL-GGIVTSKS----VRVAGDEMDEAIIKY----IRKKYN 193
Score = 30.6 bits (70), Expect = 3.8
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 623 GPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 682
G G +EE +G ++ D+GGGT +V+++++ GI KS + G++ D ++ +
Sbjct: 136 GAGLPVEEPTGN---MVVDIGGGTTEVAVISL-GGIVTSKS----VRVAGDEMDEAIIKY 187
Query: 683 FVQEFKRKYK 692
++KY
Sbjct: 188 ----IRKKYN 193
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 39.0 bits (92), Expect = 0.014
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 292 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
A L R +E V SLRD+ + I I+ +GG R P ++ D ++
Sbjct: 364 AHLTRAVLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADVLG-LPVDTL 422
Query: 348 INPDEAVAYGAAVQAAI 364
+E A GAA+ AA+
Sbjct: 423 -KGEEGPALGAAILAAV 438
Score = 39.0 bits (92), Expect = 0.014
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 749 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
A L R +E V SLRD+ + I I+ +GG R P ++ D ++
Sbjct: 364 AHLTRAVLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADVLG-LPVDTL 422
Query: 805 INPDEAVAYGAAVQAAI 821
+E A GAA+ AA+
Sbjct: 423 -KGEEGPALGAAILAAV 438
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 37.6 bits (87), Expect = 0.015
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 140 IAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIED 199
G + ++N+ AAA+A GL K E VL+ DLG GT ++I +ED
Sbjct: 97 DLGGVPVAVVNDAVAAALAEGLFGK-----------EEDTVLVVDLGTGTTGIAI--VED 143
Query: 200 GIFEVKSTA 208
G V +
Sbjct: 144 GKGGVGAAG 152
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 37.6 bits (88), Expect = 0.034
Identities = 54/241 (22%), Positives = 84/241 (34%), Gaps = 66/241 (27%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGER--NVLIFDLGGGTFDVSILTIE 198
AGL V I+ EP A+A+A E E+ V + D+GGGT D++I
Sbjct: 177 AGLKVDNIVLEPLASALA---------VLTE----DEKELGVALIDIGGGTTDIAIYK-N 222
Query: 199 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 258
+ +GG +H ++ + K ER K
Sbjct: 223 GALRYTGVIP----VGG--------DHVTKDIAKGLKTPFEE-----------AERIKIK 259
Query: 259 LSSSTQASIEIDSLFE--GVD----------FYTSITRARFEELNADLFRGTMEPVEKSL 306
S+ + + + E V + I AR EE +E V+ L
Sbjct: 260 YGSALISLADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEE--------ILELVKAEL 311
Query: 307 RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF-----NGKELNKSINPDEAV--AYGAA 359
R + + +VL GG ++P + +L + F G LN D A A+ A
Sbjct: 312 RKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTA 371
Query: 360 V 360
V
Sbjct: 372 V 372
Score = 32.6 bits (75), Expect = 1.2
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 737 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 796
+ I AR EE +E V+ LR + + +VL GG ++P + +L + F
Sbjct: 293 SEIIEARVEE--------ILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIF 344
Query: 797 -----NGKELNKSINPDEAV--AYGAAV 817
G LN D A A+ AV
Sbjct: 345 GRPVRLGVPLNIVGLTDIARNPAFSTAV 372
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 37.4 bits (87), Expect = 0.035
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 292 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
A L R +E V +L D ++ + +VGG R P ++L D G +
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVV 431
Query: 347 SINPDEAVAYGAAVQAAI 364
+EA A G A AA
Sbjct: 432 P-EVEEAGALGGAALAAA 448
Score = 37.4 bits (87), Expect = 0.035
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 749 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
A L R +E V +L D ++ + +VGG R P ++L D G +
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVV 431
Query: 804 SINPDEAVAYGAAVQAAI 821
+EA A G A AA
Sbjct: 432 P-EVEEAGALGGAALAAA 448
>gnl|CDD|117872 pfam09330, Lact-deh-memb, D-lactate dehydrogenase, membrane
binding. Members of this family are predominantly found
in prokaryotic D-lactate dehydrogenase, forming the
cap-membrane-binding domain, which consists of a large
seven-stranded antiparallel beta-sheet flanked on both
sides by alpha-helices. They allow for membrane
association.
Length = 291
Score = 36.9 bits (86), Expect = 0.041
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEA-------- 353
K +RD + DK + H ++ + G I + +K L+++F E P+E
Sbjct: 102 KRMRDYR-DKYEHHLLLKMSGDG-IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRF 159
Query: 354 VAYGAAVQAAILHGDKSEEVQDLLLLDV 381
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
Score = 36.9 bits (86), Expect = 0.041
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 761 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEA-------- 810
K +RD + DK + H ++ + G I + +K L+++F E P+E
Sbjct: 102 KRMRDYR-DKYEHHLLLKMSGDG-IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRF 159
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDV 838
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 35.5 bits (82), Expect = 0.11
Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 45/211 (21%)
Query: 147 RIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 206
++ E A LD+ ++ VL+ D+GGGT D ++ ++G S
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLK--------DKKVLVIDIGGGTTD--VVVFDNGKPVESS 193
Query: 207 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQAS 266
+ + G + + +E ++Y DL+
Sbjct: 194 S--GSLELG---VSDLYEAIAKELNKEYGIDLSDE------------------------- 223
Query: 267 IEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 326
EI+ + E+ + E + L++ + + + ++LVGG
Sbjct: 224 -EIEEILRNGKIKNYGKEEDITEIIEEAAEEYAEKILNELKE-FLGLSDVDKVILVGGGA 281
Query: 327 RIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
+ K + L + F L +P A A G
Sbjct: 282 ILLK-EYLKELFPENVVLVD--DPQFANARG 309
Score = 35.5 bits (82), Expect = 0.12
Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 37/181 (20%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++ VL+ D+GGGT D ++ ++G S+ + G + + +E ++Y
Sbjct: 166 DKKVLVIDIGGGTTD--VVVFDNGKPVESSS--GSLELG---VSDLYEAIAKELNKEYGI 218
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
DL+ EI+ + E+ +
Sbjct: 219 DLSDE--------------------------EIEEILRNGKIKNYGKEEDITEIIEEAAE 252
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
E + L++ + + + ++LVGG + K + L + F L +P A A
Sbjct: 253 EYAEKILNELKE-FLGLSDVDKVILVGGGAILLK-EYLKELFPENVVLVD--DPQFANAR 308
Query: 814 G 814
G
Sbjct: 309 G 309
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 35.5 bits (83), Expect = 0.12
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 135 KDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAV-EYNGSGERNVLIFDLGGGTFDVS 193
++S AG + +I EP AAAI GL V E GS ++ D+GGGT +V+
Sbjct: 116 RESALGAGAREVYLIEEPMAAAIGAGLP-------VTEPTGS-----MVVDIGGGTTEVA 163
Query: 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 234
++++ GI KS +GG+ FD ++N+ +R Y
Sbjct: 164 VISL-GGIVYSKS----VRVGGDKFDEAIINY----VRRNY 195
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 35.4 bits (82), Expect = 0.16
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 292 ADLFRGTMEPVEKSLRD--AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
L R +E V SLRD + I L+GG + +++L D G +
Sbjct: 365 GHLARAVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGGAKSELWRQILADVL-GVPVELP 423
Query: 348 INPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 385
N + A + GAA+ AA+ GD ++ + + P+
Sbjct: 424 ANAEGA-SVGAALLAAVGAGDFADLNEAARTVRQLPVI 460
Score = 35.4 bits (82), Expect = 0.16
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 749 ADLFRGTMEPVEKSLRD--AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
L R +E V SLRD + I L+GG + +++L D G +
Sbjct: 365 GHLARAVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGGAKSELWRQILADVL-GVPVELP 423
Query: 805 INPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 842
N + A + GAA+ AA+ GD ++ + + P+
Sbjct: 424 ANAEGA-SVGAALLAAVGAGDFADLNEAARTVRQLPVI 460
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This
domain family is found in bacteria, and is approximately
90 amino acids in length. The family is found in
association with pfam00823. There is a conserved SVP
sequence motif. There is a single completely conserved
residue W that may be functionally important. The
proteins in this family are PE/PPE proteins implicated
in immunostimulation and virulence.
Length = 81
Score = 32.3 bits (74), Expect = 0.16
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTI 628
+G G PGA AG +G P G PT+
Sbjct: 45 AAAGAVLPGMPGAAAAGRGSAGFPRYGFRPTV 76
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 34.5 bits (80), Expect = 0.27
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 272 LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTR 327
+F G+ TRA L+R +E V +LR A+ ++ +V VGG +
Sbjct: 358 VFFGLTLGH--TRA-------HLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGAK 408
Query: 328 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364
++ D G + N A + G A+ AA+
Sbjct: 409 SRLWMQIKADVL-GLPVVTPENTVGA-SLGDALLAAV 443
Score = 34.5 bits (80), Expect = 0.27
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 729 LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTR 784
+F G+ TRA L+R +E V +LR A+ ++ +V VGG +
Sbjct: 358 VFFGLTLGH--TRA-------HLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGAK 408
Query: 785 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821
++ D G + N A + G A+ AA+
Sbjct: 409 SRLWMQIKADVL-GLPVVTPENTVGA-SLGDALLAAV 443
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 33.7 bits (77), Expect = 0.39
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 596 YQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
QG GG GG G G P G G G G
Sbjct: 33 NQGMGGPVGGGGGPGAGGGAPGGPVGGGGGG 63
Score = 31.4 bits (71), Expect = 2.2
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 596 YQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
Y G G G P G G G G
Sbjct: 20 YPAPGQPAQQGYANQGMGGPVGGGGGPGAGG 50
Score = 29.9 bits (67), Expect = 6.2
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGP---GPTIEEGSGE 634
G GG PG GAPG G GP G E
Sbjct: 41 GGGGGPGAGGGAPGGPVGGGGGGSGGPPGGGEVAGEAEDA 80
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 33.7 bits (78), Expect = 0.40
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 22/111 (19%)
Query: 127 NISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFD 184
I+ V ++ K++ AG + +I EP AAAI GL + E GS ++ D
Sbjct: 111 GITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IM----EPTGS-----MVVD 159
Query: 185 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
+GGGT +V+++++ GI V S++ +GG+ D ++ ++KY
Sbjct: 160 IGGGTTEVAVISL-GGI--VSSSS--VRVGGDKMDEAIIV----YVRKKYN 201
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 34.0 bits (78), Expect = 0.41
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 602 APGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGER 635
APG GA G GA PGPTI G+
Sbjct: 40 QRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDT 73
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 33.8 bits (78), Expect = 0.43
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 175 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 208
+G +N ++ D+GG + DVS I DG E+ S
Sbjct: 74 AGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEG 105
Score = 33.8 bits (78), Expect = 0.43
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 665
+G +N ++ D+GG + DVS I DG E+ S
Sbjct: 74 AGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEG 105
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This
model describes archaeal and eukaryotic orthologs of
bacterial IF-2. Like IF-2, it helps convey the initiator
tRNA to the ribosome, although the initiator is
N-formyl-Met in bacteria and Met here. This protein is
not closely related to the subunits of eIF-2 of
eukaryotes, which is also involved in the initiation of
translation. The aIF-2 of Methanococcus jannaschii
contains a large intein interrupting a region of very
strongly conserved sequence very near the amino end; the
alignment generated by This model does not correctly
align the sequences from Methanococcus jannaschii and
Pyrococcus horikoshii in this region [Protein synthesis,
Translation factors].
Length = 590
Score = 34.0 bits (78), Expect = 0.45
Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 28/145 (19%)
Query: 460 EVTFDIDANGIL-------NVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKA 512
E+ D D G++ ++ A+ D G +SK D V +A K
Sbjct: 344 EIKIDTDEEGVVVKADTLGSLEALVNELRDMGVPIKKADIGDVSKRD----VVEAGIAKQ 399
Query: 513 EDEKQKAVISAKNSLESYCFNMK--STVEDEKLKDKISDAERTQILDKCNDVIKWLDANQ 570
ED A+I+ FN+K E E K I I + +W+
Sbjct: 400 EDRVYGAIIA---------FNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWI---- 446
Query: 571 LAEKEEFEHKQKELEAICNPIITKL 595
E E E K+K +EAI P +L
Sbjct: 447 --EGIEEEKKRKWMEAIIKPAKIRL 469
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 33.4 bits (76), Expect = 0.59
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRMVNH 682
E +G+R + + D GGGT D+++ IE G + K++ G G D F+ +
Sbjct: 249 EMQAGDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQI 307
Query: 683 FVQEFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY---- 736
F ++F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 308 FGEDFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHR 362
Query: 737 -----TSITRARFE--------------ELNADLFRGTMEPVEKSLRDAKMDKAQIHDI- 776
T++ ++ E +LF+ T+ + + + + M K ++ +
Sbjct: 363 GQNVETALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHI-ENLMQKPEVKGVK 421
Query: 777 --VLVGGSTRIPKVQKLLQDFF 796
LVGG P +Q+ +Q+
Sbjct: 422 FLFLVGGFAESPMLQRAVQNAL 443
Score = 33.0 bits (75), Expect = 0.80
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 41/199 (20%)
Query: 175 SGERNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRMVNHFVQ 228
+G+R + + D GGGT D+++ IE G + K++ G G D F+ + F +
Sbjct: 252 AGDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGE 310
Query: 229 EFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY------- 279
+F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 311 DFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQN 365
Query: 280 --TSITRARFE--------------ELNADLFRGTMEPVEKSLRDAKMDKAQIHDI---V 320
T++ ++ E +LF+ T+ + + + + M K ++ +
Sbjct: 366 VETALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHI-ENLMQKPEVKGVKFLF 424
Query: 321 LVGGSTRIPKVQKLLQDFF 339
LVGG P +Q+ +Q+
Sbjct: 425 LVGGFAESPMLQRAVQNAL 443
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 33.8 bits (77), Expect = 0.65
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 471 LNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKY-------KAEDEKQKAVISA 523
N+ ++ E +I + + R +E+IE + EK E+++++
Sbjct: 225 ENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
+ + ++ E LK + + + L + +K L+ EKEE E +KE
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 584 LE 585
L+
Sbjct: 345 LK 346
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.4 bits (77), Expect = 0.69
Identities = 22/98 (22%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
Query: 496 SKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISD------ 549
++E +R++ +A+K +AE K++A++ AK + ++ +E E LK++ ++
Sbjct: 30 AEELAKRIIEEAKK-EAETLKKEALLEAKEEVHKL----RAELERE-LKERRNELQRLER 83
Query: 550 --AERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELE 585
+R + LD+ + + + N +++E +K+K L+
Sbjct: 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLD 121
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting
transactivator with ED-rich tail, are characterized by a
conserved 32-amino acid sequence at the C-terminus.
CITED proteins do not bind DNA directly and are thought
to function as transcriptional co-activators.
Length = 206
Score = 32.2 bits (73), Expect = 0.85
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 9/42 (21%)
Query: 596 YQGSGGAPGGFPG-------APGAGAPPSG--APGAGPGPTI 628
YQG GAP G PG PGAG PP P P +
Sbjct: 112 YQGHAGAPAGHPGGGGPQQFRPGAGQPPGMQHMPAPALPPNV 153
>gnl|CDD|114217 pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen.
Most of the antigens of Mycobacterium leprae and M.
tuberculosis that have been identified are members of
stress protein families, which are highly conserved
throughout many diverse species. Of the M. leprae and M.
tuberculosis antigens identified by monoclonal
antibodies, all except the 18-kDa M. leprae antigen and
the 19-kDa M. tuberculosis antigen are strongly
cross-reactive between these two species and are coded
within very similar genes.
Length = 160
Score = 31.9 bits (72), Expect = 0.97
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 580 KQKELEAICNPIITKLYQGSGGAPGGFPGAPGAG-----APPSGAPGAGPGPTIEEGSGE 634
++K L A+ I L G+ G G P + +P + +PGA G + +
Sbjct: 2 RRKLLAAVAGVTI--LAAGASGCSSGNKSTPSSSKTTNSSPTTASPGAAAGEKVTIDGKD 59
Query: 635 RNV---LIFDLGGGTFDVSILTIEDGIFEV 661
+NV ++ G +++I GI V
Sbjct: 60 QNVSGSVVCTTANGKVNIAIGGAATGIAAV 89
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 32.5 bits (75), Expect = 1.5
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEA--------V 354
K ++D + DK + H ++ + G I + + L+++F E + P+E
Sbjct: 372 KRMKDYR-DKYEHHLLLKMSGDG-IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFA 429
Query: 355 AYGAAVQAAILHGDKSEEVQDLLLLDV 381
A GAA++ +H D EV+D+L LD+
Sbjct: 430 AAGAAIRYRAVHRD---EVEDILALDI 453
Score = 32.5 bits (75), Expect = 1.5
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 761 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEA--------V 811
K ++D + DK + H ++ + G I + + L+++F E + P+E
Sbjct: 372 KRMKDYR-DKYEHHLLLKMSGDG-IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFA 429
Query: 812 AYGAAVQAAILHGDKSEEVQDLLLLDV 838
A GAA++ +H D EV+D+L LD+
Sbjct: 430 AAGAAIRYRAVHRD---EVEDILALDI 453
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 32.2 bits (74), Expect = 1.8
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 292 ADLFRGTMEPVE---KSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
ADL R +E V + L +A + ++ ++ VGG R +++ D G+ + +
Sbjct: 386 ADLLRAVLEGVALNLRWLLEAVERFLGRRLGELRFVGGGARSDLWCQIIADVL-GRPIRR 444
Query: 347 SINPDEAVAYGAAVQAAI 364
+P+EA A GAA AA+
Sbjct: 445 VEDPEEAGARGAAAIAAV 462
Score = 32.2 bits (74), Expect = 1.8
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 749 ADLFRGTMEPVE---KSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
ADL R +E V + L +A + ++ ++ VGG R +++ D G+ + +
Sbjct: 386 ADLLRAVLEGVALNLRWLLEAVERFLGRRLGELRFVGGGARSDLWCQIIADVL-GRPIRR 444
Query: 804 SINPDEAVAYGAAVQAAI 821
+P+EA A GAA AA+
Sbjct: 445 VEDPEEAGARGAAAIAAV 462
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 30.5 bits (69), Expect = 1.9
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
G+GG G AP A P P A P P
Sbjct: 5 DGTGGVSSG-SSAPAPPAGPGPGPNAPPAP 33
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 30.7 bits (70), Expect = 2.8
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 259 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 318
LSS T + +L EG+ R E L A +D+
Sbjct: 110 LSSPTTLANLYRALLEGL-ALA--LRQILEALAEL--------------GAPIDR----- 147
Query: 319 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364
I+ GG +R P + +LL D G+ + + EA A GAA+ AA+
Sbjct: 148 IIASGGGSRNPLLLQLLADAL-GRPV-EVPETAEATALGAALLAAV 191
Score = 30.7 bits (70), Expect = 2.8
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 716 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 775
LSS T + +L EG+ R E L A +D+
Sbjct: 110 LSSPTTLANLYRALLEGL-ALA--LRQILEALAEL--------------GAPIDR----- 147
Query: 776 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821
I+ GG +R P + +LL D G+ + + EA A GAA+ AA+
Sbjct: 148 IIASGGGSRNPLLLQLLADAL-GRPV-EVPETAEATALGAALLAAV 191
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 31.0 bits (70), Expect = 3.0
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 142 GLNVLRIINEPTAAAIAYGL--DKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIED 199
G + +I EP AAAI L D+ V + V D+GGGT +V+I++
Sbjct: 125 GAKNVHLIEEPVAAAIGADLPVDEPVANVVV-------------DIGGGTTEVAIISF-G 170
Query: 200 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 230
G+ S +GG+ D +V+ +++
Sbjct: 171 GVVSCHS----IRIGGDQLDEDIVSFVRKKY 197
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 30.2 bits (68), Expect = 3.0
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNS----LESYCFNMKSTVEDEKL-KDKISD 549
+S+E+ E ++ +AE KAE E K I LE ++S E E L K
Sbjct: 35 MSEENQELVILEAENSKAEVETLKTKIEEMAESLKDLELDLVTVRS--EKENLTKQLQEK 92
Query: 550 AERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
ER L+K N + N L EKE+ + + KE
Sbjct: 93 QERVSELEKLNSSTE----NLLEEKEQEKIQMKE 122
>gnl|CDD|148314 pfam06632, XRCC4, DNA double-strand break repair and V(D)J
recombination protein XRCC4. This family consists of
several eukaryotic DNA double-strand break repair and
V(D)J recombination protein XRCC4 sequences. In the
non-homologous end joining pathway of DNA double-strand
break repair, the ligation step is catalyzed by a complex
of XRCC4 and DNA ligase IV. It is thought that XRCC4 and
ligase IV are essential for alignment-based gap filling,
as well as for final ligation of the breaks.
Length = 331
Score = 30.6 bits (69), Expect = 4.2
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 939 KENKITITNDRGRRYLNVTAIEKSTGKENKITITNDR----GRLSKEDIERMVNDA--EK 992
K ++I+++++ Y A EK+ G IT+T+ G +S+ DI + +D E+
Sbjct: 4 KVSRISLSSEPNIIYFLQVAWEKTLGSGFVITLTDGHSAWTGEVSESDISQEADDMAMER 63
Query: 993 YKAEDEKQKAVISAKNSLESYCFNM 1017
K DE +KA++S Y FN
Sbjct: 64 EKYVDELRKALVSGAGPAGEYTFNF 88
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.0 bits (70), Expect = 4.2
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 486 ITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE--KL 543
I I +R R +I++ +ND E E + +SY +E+E L
Sbjct: 580 IDIETNRSR--SNEIKKQLNDLESRLQE------IEIGFPDDKSYIDKSIREIENEANNL 631
Query: 544 KDKISDAERTQIL-DKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600
+K ++ + +IL +K I Q+AE + KE+ + N I L +
Sbjct: 632 NNKYNEIQENKILIEKLRGKIDNY-KKQIAEIDSIIPDLKEITSRINDIEDNLKKSRK 688
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 30.6 bits (70), Expect = 4.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 594 KLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
+ Q +PGG G P G GAP A P
Sbjct: 385 RRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAP 417
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 31.0 bits (70), Expect = 4.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 382
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
Score = 31.0 bits (70), Expect = 4.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 801 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 839
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.6 bits (69), Expect = 5.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
GGAPGG A AGA P+ A
Sbjct: 363 TGGGAPGGGVPARVAGAVPAPGARAAAAV 391
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 30.2 bits (68), Expect = 5.8
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 573 EKEEFEHKQKELE---AICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIE 629
+EE+ + E + + YQG G +PGG PG PP G E
Sbjct: 282 TEEEYAPNELESSDSTIRSSQTQEEEYQGQGYSPGGVPGQESNTPPPVQDLKDNTGNY-E 340
Query: 630 EGSGERNV 637
E E+NV
Sbjct: 341 ESQYEKNV 348
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 30.1 bits (68), Expect = 6.3
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 507 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 566
+K + +D + + S N + + E +LK++I + IL+K + +
Sbjct: 62 EKKLENKDNPELEIASLPNRFLAIVPGNEEEAE--ELKEEIEEETWESILNKVKEYLDIE 119
Query: 567 DANQLAEKEE-FEHKQKELEAI 587
+ K + E +E
Sbjct: 120 NVEPFLLKSDALERISDRIEDG 141
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 6.8
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAE-DEKQKAVISAKNSLESYCFNMKSTVED 540
KE + L+ E +E+ + + EK K E +E+ + + L+ +K +E+
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
Query: 541 -EKLKDK-------ISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEA 586
+K K K +++ R ++L++ +K E +E E K+++L
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
>gnl|CDD|236642 PRK10030, PRK10030, hypothetical protein; Provisional.
Length = 197
Score = 29.3 bits (66), Expect = 6.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKY 510
+ G++ K + LS E +++ A++Y
Sbjct: 78 IAHGEKGKYVVRRLENGLSVEQQQKLAQTAKRY 110
Score = 29.3 bits (66), Expect = 6.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 961 KSTGKENKITITNDRGRLSKEDIERMVNDAEKY 993
+ G++ K + LS E +++ A++Y
Sbjct: 78 IAHGEKGKYVVRRLENGLSVEQQQKLAQTAKRY 110
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 30.0 bits (68), Expect = 7.3
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 269 IDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG 324
I S G FY D+ R +E + R ++K + IV++GG
Sbjct: 339 IRSEIAGGAFY----GLTDTTSQEDITRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394
Query: 325 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 362
+R +L GK + ++ E VA GAA+ A
Sbjct: 395 GSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
Score = 30.0 bits (68), Expect = 7.3
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 726 IDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG 781
I S G FY D+ R +E + R ++K + IV++GG
Sbjct: 339 IRSEIAGGAFY----GLTDTTSQEDITRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394
Query: 782 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 819
+R +L GK + ++ E VA GAA+ A
Sbjct: 395 GSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.3 bits (69), Expect = 7.3
Identities = 6/30 (20%), Positives = 7/30 (23%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 627
G A A P+ AP
Sbjct: 388 AGGAGAPAAAAPSAAAAAPAAAPAPAAAAP 417
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 30.0 bits (67), Expect = 8.0
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 491 DRGRLSKEDIERMVNDAEKY----KAEDEKQKAVISAKNSLESYCFNMKSTVED-----E 541
+ +++ + +A K K EK +A+ S N E+Y MK ++ E
Sbjct: 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333
Query: 542 KLKDKISDAE-RTQILDKCNDVIKWLDANQLAEKEEFEHKQKELE 585
KLK +I E + L D + Q E+FE +E E
Sbjct: 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQERE 378
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein;
Provisional.
Length = 186
Score = 29.2 bits (66), Expect = 8.3
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 598 GSGGAPGGFPGAPGAGAP-PSGAPGAGPGP 626
G GG+ GG G G GAP GA + P
Sbjct: 136 GGGGSGGGGGGGGGGGAPGGGGAQASAPAD 165
>gnl|CDD|220562 pfam10092, DUF2330, Uncharacterized protein conserved in bacteria
(DUF2330). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 337
Score = 29.6 bits (67), Expect = 8.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 596 YQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILT 653
Q G GAGAP + AG G T+E E V G +++ +L+
Sbjct: 85 EQDPCAGGWGLDRGGGAGAPDAAGAAAG-GVTVEA---EFTV-------GEYEIVVLS 131
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism].
Length = 366
Score = 29.7 bits (67), Expect = 9.4
Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 163 KKVGSTAVEYNGSGERNVLIF----DLGGGTFDVSILTIEDGIFEVKSTAGD------TH 212
K G AV G G L + G + FE + AG
Sbjct: 200 KAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGTAEFEEIAGAGGAGAGLLAT 259
Query: 213 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRAL 245
D+ FV+ +K KY + A
Sbjct: 260 AYSTPDDSPANKKFVEAYKAKYGDPAAPSYFAA 292
>gnl|CDD|218483 pfam05183, RdRP, RNA dependent RNA polymerase. This family of
proteins are eukaryotic RNA dependent RNA polymerases.
These proteins are involved in post transcriptional gene
silencing where they are thought to amplify dsRNA
templates.
Length = 508
Score = 29.8 bits (67), Expect = 9.8
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 47 LEEGAVMLYCSDGYTAGWINSITGD--------LTPWDGARLKAVSAQELSRGVKAI 95
L+EG V + SDG G + GD L P D ++AV EL +
Sbjct: 332 LKEGEVFVQVSDGNDGGQYEYLEGDVLVARNPCLHPGDIRVVRAVDVPELRHLKDVV 388
>gnl|CDD|234519 TIGR04244, nitrous_NosZ_RR, nitrous-oxide reductase, TAT-dependent.
Members of this family are the nitrous-oxide reductase
structural protein, NosZ, with an N-terminal
twin-arginine translocation (TAT) signal sequence (see
TIGR01409). The TAT system replaces the Sec system for
export of proteins with bound cofactor.
Length = 627
Score = 29.7 bits (67), Expect = 9.9
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERN-VLIFDLGGGTFDVSILTIED 656
+G A G GA GA A + A A GE + F GG + +V IL +
Sbjct: 13 LAGLAGAGAAGAAGAAAAAAAAAAAAAAGKYHVAPGELDEYYGFWSGGHSGEVRILGLPS 72
Query: 657 G 657
Sbjct: 73 M 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,082,812
Number of extensions: 5330879
Number of successful extensions: 5638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5341
Number of HSP's successfully gapped: 185
Length of query: 1023
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 916
Effective length of database: 6,191,724
Effective search space: 5671619184
Effective search space used: 5671619184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.5 bits)