RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6736
(1023 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 900 bits (2328), Expect = 0.0
Identities = 365/418 (87%), Positives = 391/418 (93%), Gaps = 9/418 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKK ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK---------VGAERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
Score = 797 bits (2060), Expect = 0.0
Identities = 326/389 (83%), Positives = 348/389 (89%), Gaps = 26/389 (6%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
ERNVLIFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK
Sbjct: 189 VGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248
Query: 691 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNAD
Sbjct: 249 HKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD 308
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEA
Sbjct: 309 LFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEA 368
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
VAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTF
Sbjct: 369 VAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTF 428
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNV 930
TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGI
Sbjct: 429 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI--- 485
Query: 931 TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDA 990
LNV+A++KSTGKENKITITND+GRLSKEDIERMV +A
Sbjct: 486 -----------------------LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEA 522
Query: 991 EKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
EKYKAEDEKQ+ +S+KNSLESY FNMK+
Sbjct: 523 EKYKAEDEKQRDKVSSKNSLESYAFNMKA 551
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 850 bits (2198), Expect = 0.0
Identities = 136/515 (26%), Positives = 232/515 (45%), Gaps = 28/515 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P ++ + D+ IAGLN +RI+N+ TAA ++YG+ K E R V
Sbjct: 145 VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEE----KPRIVA 200
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KYK D+ N
Sbjct: 201 FVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIREN 260
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L EP
Sbjct: 261 PKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 320
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
V K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GAA
Sbjct: 321 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFI 379
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPTKQTQTFTTYS 417
AI V+ D+ P S+ V + ++ P+ + T
Sbjct: 380 CAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTG 437
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPAPRGVPQIEVTFDIDANGILNV-- 473
D T + + +E+T + P VP +++ D +G+ +
Sbjct: 438 DFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEE 494
Query: 474 --------TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525
+ T K++ +TI L + + ++ + A+D+ KN
Sbjct: 495 AYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKN 554
Query: 526 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKEL 584
+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +EL
Sbjct: 555 TLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEEL 613
Query: 585 EAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGA 619
++ N I + A + A
Sbjct: 614 ASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMA 648
Score = 679 bits (1753), Expect = 0.0
Identities = 103/398 (25%), Positives = 174/398 (43%), Gaps = 28/398 (7%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
E R V D+G ++ SI+ + G +V TA D H GG DFD + HF EFK
Sbjct: 191 EGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFK 250
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL
Sbjct: 251 TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELV 310
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N D
Sbjct: 311 KPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQD 369
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPT 864
EA+A GAA AI V+ D+ P S+ V + ++ P+
Sbjct: 370 EAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPS 427
Query: 865 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPAPRGVPQIEVTFDI 922
+ T D T + + +E+T + P VP +++
Sbjct: 428 TKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VKLKLRC 484
Query: 923 DANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKED 982
D +G+ + E + T K++ +TI L +
Sbjct: 485 DPSGLHTIEEAYTIEDIE----------------AGSDTKTVKKDDLTIVAHTFGLDAKK 528
Query: 983 IERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
+ ++ + A+D+ KN+LE Y + ++ K
Sbjct: 529 LNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGK 566
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 616 bits (1592), Expect = 0.0
Identities = 239/540 (44%), Positives = 331/540 (61%), Gaps = 50/540 (9%)
Query: 73 TPWDGARLKAVSAQELSRGVKAIFTAPDILKK--KTSEDIL-RKVDGQNEGLI--PAYFN 127
W + + ++ ++S A +LKK KT+ED L V E +I PAYFN
Sbjct: 100 DAWVEVKGQKMAPPQIS----AE-----VLKKMKKTAEDYLGEPV---TEAVITVPAYFN 147
Query: 128 ISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGG 187
+ ++TKD+G IAGL V RIINEPTAAA+AYGLDK +G R + ++DLGG
Sbjct: 148 DAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG----------TGNRTIAVYDLGG 197
Query: 188 GTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKR 243
GTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK+ DL +
Sbjct: 198 GTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPL 257
Query: 244 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLFRG 297
A++RL+ A E+AK LSS+ Q +++ + D +TRA+ E L DL
Sbjct: 258 AMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
++EP++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA G
Sbjct: 316 SIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIG 374
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T
Sbjct: 375 AAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 430
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
DNQ V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +
Sbjct: 431 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 490
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K++GKE KITI G L++++I++MV DAE D K ++ +N + + +
Sbjct: 491 KNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQ 549
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
VE+ DK+ ++T I + L +K E K +EL + ++ Q
Sbjct: 550 VEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604
Score = 508 bits (1310), Expect = e-169
Identities = 183/398 (45%), Positives = 252/398 (63%), Gaps = 44/398 (11%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHF 683
+++G+G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 684 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYT 737
V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI 298
Query: 738 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
+TRA+ E L DL ++EP++ +L+DA + + I D++LVGG TR+P VQK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 798 GKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIK 857
GKE K +NPDEAVA GAAVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 858 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIE 917
+NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPRG+PQIE
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 918 VTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGR 977
VTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSG--------------------------- 506
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCF 1015
L++++I++MV DAE D K ++ +N +
Sbjct: 507 LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLH 544
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 593 bits (1530), Expect = 0.0
Identities = 223/432 (51%), Positives = 298/432 (68%), Gaps = 27/432 (6%)
Query: 104 KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160
K +ED L V +I PAYFN + ++TKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 98 KSYAEDYLGEPV---TRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYG 154
Query: 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220
LDK+ ++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLGG+DFD
Sbjct: 155 LDKE-----------EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQ 203
Query: 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-V 276
++++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I I + G +
Sbjct: 204 VIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPL 263
Query: 277 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 336
++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++
Sbjct: 264 HLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIK 323
Query: 337 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT 396
GKE +K +NPDE VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV T
Sbjct: 324 REL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFT 378
Query: 397 ALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456
LI+RNTTIPT ++Q FTT +DNQ V I V +GER M DN LG+F+LT IPPAPRGV
Sbjct: 379 KLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGV 438
Query: 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEK 516
PQIEVTFDIDANGI++V A + T KE ITI + G LS+E+I+RM+ +AE+ D K
Sbjct: 439 PQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRK 497
Query: 517 QKAVISAKNSLE 528
+K +N +
Sbjct: 498 RKEAAELRNEAD 509
Score = 508 bits (1310), Expect = e-170
Identities = 187/383 (48%), Positives = 254/383 (66%), Gaps = 36/383 (9%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLGG+DFD ++++ V +FK+++
Sbjct: 159 EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHG 218
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELN 748
DL+ +K AL+RL+ A E+AK+ LS TQ I I + G + ++TRA+FEEL+
Sbjct: 219 IDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELS 278
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++ GKE +K +NPD
Sbjct: 279 AHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPD 337
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868
E VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV T LI+RNTTIPT ++Q
Sbjct: 338 EVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQ 393
Query: 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGIL 928
FTT +DNQ V I V +GER M DN LG+F+LT IPPAPRGVPQIEVTFDIDANGI+
Sbjct: 394 VFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIV 453
Query: 929 NVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988
+V A + T KE ITI + G LS+E+I+RM+
Sbjct: 454 HVRAKDLGTNKEQSITIKSSSG---------------------------LSEEEIQRMIK 486
Query: 989 DAEKYKAEDEKQKAVISAKNSLE 1011
+AE+ D K+K +N +
Sbjct: 487 EAEENAEADRKRKEAAELRNEAD 509
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 541 bits (1396), Expect = 0.0
Identities = 209/247 (84%), Positives = 226/247 (91%), Gaps = 7/247 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTI GLNVLRIINEPTAAAIAYGLDKK + GE+NVL
Sbjct: 165 VPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCA-------GGEKNVL 217
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EFKRK+KKD+ N
Sbjct: 218 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPN 277
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEELNADLFRGT+EP
Sbjct: 278 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEP 337
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 338 VEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 397
Query: 362 AAILHGD 368
AAIL GD
Sbjct: 398 AAILIGD 404
Score = 456 bits (1176), Expect = e-152
Identities = 174/197 (88%), Positives = 186/197 (94%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EFK
Sbjct: 208 GCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
RK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEELN
Sbjct: 268 RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELN 327
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
ADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPD
Sbjct: 328 ADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 387
Query: 809 EAVAYGAAVQAAILHGD 825
EAVAYGAAVQAAIL GD
Sbjct: 388 EAVAYGAAVQAAILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 536 bits (1384), Expect = 0.0
Identities = 142/244 (58%), Positives = 191/244 (78%), Gaps = 10/244 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN + ++TKD+GTIAGLNVLRI+NEPTAAAIAYGLDK E ++
Sbjct: 160 VPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKS----------DKEHQII 209
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++DLGGGTFDVS+L+IE+G+FEV++T+GDTHLGGEDFD ++V ++ FK+K+ D++ N
Sbjct: 210 VYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDN 269
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+AL +L+ E+AKR LSS IEIDS +G+D ++TRA+FEELN DLF+ T++P
Sbjct: 270 NKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKP 329
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK L+D+ ++K + DIVLVGGSTRIPKVQ+LL+ +F+GK+ +K INPDEAVAYGAAVQ
Sbjct: 330 VEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQ 389
Query: 362 AAIL 365
A +L
Sbjct: 390 AGVL 393
Score = 451 bits (1163), Expect = e-150
Identities = 109/191 (57%), Positives = 152/191 (79%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
E ++++DLGGGTFDVS+L+IE+G+FEV++T+GDTHLGGEDFD ++V ++ FK+K+
Sbjct: 203 DKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKH 262
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 751
D++ N +AL +L+ E+AKR LSS IEIDS +G+D ++TRA+FEELN DL
Sbjct: 263 GIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDL 322
Query: 752 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 811
F+ T++PVEK L+D+ ++K + DIVLVGGSTRIPKVQ+LL+ +F+GK+ +K INPDEAV
Sbjct: 323 FKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAV 382
Query: 812 AYGAAVQAAIL 822
AYGAAVQA +L
Sbjct: 383 AYGAAVQAGVL 393
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 335 bits (862), Expect = e-110
Identities = 105/149 (70%), Positives = 129/149 (86%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LG FEL+ IPPAPRGVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ D
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
I+RMV++A++++ ED +Q+ + A+N LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
Score = 321 bits (825), Expect = e-104
Identities = 105/175 (60%), Positives = 129/175 (73%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LG FEL+ IPPAPRGVPQIEVTF+IDANGI LNV
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGI--------------------------LNV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +KSTGK N+ITI N++GRL++ DI+RMV++A++++ ED +Q+ + A+N LE
Sbjct: 98 SAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 334 bits (860), Expect = e-109
Identities = 103/149 (69%), Positives = 124/149 (83%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LLGKFELT IPPAPRGVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
I+RMV +AEK+ +ED KA + ++N LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
Score = 320 bits (823), Expect = e-104
Identities = 103/175 (58%), Positives = 124/175 (70%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LLGKFELT IPPAPRGVPQIEVTF +DANGI L V
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGI--------------------------LKV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +K TGK ITITND+GRL++E+I+RMV +AEK+ +ED KA + ++N LE
Sbjct: 98 SATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 329 bits (846), Expect = e-107
Identities = 95/149 (63%), Positives = 119/149 (79%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LG F++T IPPAPRGVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS ED
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
IERM+NDA+K+ A+D+ QK + ++N LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
Score = 315 bits (809), Expect = e-102
Identities = 95/175 (54%), Positives = 119/175 (68%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LG F++T IPPAPRGVPQIEVTF+ID NGI L+V
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGI--------------------------LHV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +K TG +NK+TITND RLS EDIERM+NDA+K+ A+D+ QK + ++N LE
Sbjct: 98 SAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 335 bits (861), Expect = e-106
Identities = 134/308 (43%), Positives = 190/308 (61%), Gaps = 40/308 (12%)
Query: 73 TPWDGARLKAVSAQELSRGVKAIFTAPDILKK--KTSEDIL-RKVDGQNEGLI--PAYFN 127
W + + ++ ++S A +LKK KT+ED L V E +I PAYFN
Sbjct: 100 DAWVEVKGQKMAPPQIS----AE-----VLKKMKKTAEDYLGEPV---TEAVITVPAYFN 147
Query: 128 ISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGG 187
+ ++TKD+G IAGL V RIINEPTAAA+AYGLDK +G R + ++DLGG
Sbjct: 148 DAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG----------TGNRTIAVYDLGG 197
Query: 188 GTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKR 243
GTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK+ DL +
Sbjct: 198 GTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPL 257
Query: 244 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLFRG 297
A++RL+ A E+AK LSS+ Q +++ + D +TRA+ E L DL
Sbjct: 258 AMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA G
Sbjct: 316 SIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIG 374
Query: 358 AAVQAAIL 365
AAVQ +L
Sbjct: 375 AAVQGGVL 382
Score = 255 bits (654), Expect = 1e-76
Identities = 91/205 (44%), Positives = 136/205 (66%), Gaps = 13/205 (6%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHF 683
+++G+G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 684 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYT 737
V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI 298
Query: 738 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
+TRA+ E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 798 GKELNKSINPDEAVAYGAAVQAAIL 822
GKE K +NPDEAVA GAAVQ +L
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVL 382
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 287 bits (736), Expect = 1e-90
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 6/225 (2%)
Query: 376 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 435
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 436 KDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRL 495
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 496 SKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T I
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAI 177
Query: 556 LDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600
+ L +K E K +EL + ++ Q
Sbjct: 178 ESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
Score = 255 bits (653), Expect = 1e-78
Identities = 87/180 (48%), Positives = 111/180 (61%), Gaps = 27/180 (15%)
Query: 833 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 892
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 893 KDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-- 118
Query: 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLES 1012
L++++I++MV DAE D K + ++ +N +
Sbjct: 119 -------------------------LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDH 153
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 278 bits (714), Expect = 7e-88
Identities = 95/179 (53%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
Query: 361 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 420
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 421 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 480
V I+V +GER M DN LLG+F L IPPAPRGVPQIEVTFDIDANGI++V+A +K T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 481 GKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
G+E +I I + G LSK+DIE MV +AEKY ED ++K + A N E + ++ +E
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
Score = 267 bits (684), Expect = 1e-83
Identities = 94/198 (47%), Positives = 115/198 (58%), Gaps = 31/198 (15%)
Query: 818 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 877
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 878 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 937
V I+V +GER M DN LLG+F L IPPAPRGVPQIEVTFDIDANGI++V+A +K T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 938 GKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 997
G+E +I I + G LSK+DIE MV +AEKY ED
Sbjct: 125 GREQQIVIQSSGG---------------------------LSKDDIENMVKNAEKYAEED 157
Query: 998 EKQKAVISAKNSLESYCF 1015
++K + A N E
Sbjct: 158 RRKKERVEAVNMAEGIIH 175
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 272 bits (697), Expect = 9e-85
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%)
Query: 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 438
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 439 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 498
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G L+
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDS 119
Query: 499 DIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDK 558
+I M+ D+ Y +D K + + K ++ + +S AER I D
Sbjct: 120 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDA 177
Query: 559 CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599
+ + + + + E K ++ + S
Sbjct: 178 AAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 215
Score = 242 bits (621), Expect = 4e-74
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 27/177 (15%)
Query: 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 895
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 896 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLN 955
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I +
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKP-------- 112
Query: 956 VTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLES 1012
S G L+ +I M+ D+ Y +D K + + K
Sbjct: 113 ------SYG-------------LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAAR 150
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 251 bits (643), Expect = 2e-78
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LLG+F L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
IE M+ +AEK AED K+K ++ N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
Score = 241 bits (617), Expect = 1e-74
Identities = 90/175 (51%), Positives = 112/175 (64%), Gaps = 27/175 (15%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LLG+F L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG------ 117
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
LSK+ IE M+ +AEK AED K+K ++ N E
Sbjct: 118 ---------------------LSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 222 bits (567), Expect = 7e-68
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++G
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 482 KENKITITNDRG 493
KE KITI G
Sbjct: 123 KEQKITIKASSG 134
Score = 222 bits (567), Expect = 7e-68
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 819 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 878
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 879 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 938
V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++G
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 939 KENKITITNDRG 950
KE KITI G
Sbjct: 123 KEQKITIKASSG 134
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 166 bits (422), Expect = 3e-48
Identities = 64/124 (51%), Positives = 82/124 (66%), Gaps = 8/124 (6%)
Query: 507 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 566
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 567 DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
D+NQ AEKEEFEH+QK+LE + NPII+KLYQ +GGAP GA P GA G GP
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPP--------GAAPGGAAGGAGGP 114
Query: 627 TIEE 630
TIEE
Sbjct: 115 TIEE 118
Score = 53.0 bits (127), Expect = 1e-08
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 990 AEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
+ + + LESY FN+K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQT 33
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 152 bits (385), Expect = 2e-43
Identities = 71/111 (63%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 520 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 579
V + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 580 KQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEE 630
+QKELE +CNPIITKLYQ +GG PGG PG G P GA GPTIEE
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSG-GASSGPTIEE 111
Score = 35.0 bits (80), Expect = 0.022
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 1003 VISAKNSLESYCFNMKS 1019
V + LESY FNMK+
Sbjct: 2 VPRGSHMLESYAFNMKA 18
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 148 bits (375), Expect = 4e-42
Identities = 70/115 (60%), Positives = 84/115 (73%), Gaps = 6/115 (5%)
Query: 516 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 575
+SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 576 EFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEE 630
EFEHK+KELE +CNPII+ LYQG+GG G GA G G+G GPTIEE
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK------GGSGSGPTIEE 111
Score = 38.0 bits (88), Expect = 0.002
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 999 KQKAVISAKNSLESYCFNMKS 1019
+SAKN+LESY FNMKS
Sbjct: 3 AAAERVSAKNALESYAFNMKS 23
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 99.6 bits (249), Expect = 3e-23
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 67/241 (27%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
IP + ++ AGL ++ +++EP AAA A G++ +
Sbjct: 99 IPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDGI---------------- 142
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+ D+GGGT ++++ D GG + + F
Sbjct: 143 VVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAGSYKIPF----------- 186
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
A E K+ S + + R +E
Sbjct: 187 -------EEA-ETIKKDFSRHREIMRVV--------------------------RPVIEK 212
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+ +++ + Q + +VGG+ + + F GKE+ I+P G A+
Sbjct: 213 MALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALF 271
Query: 362 A 362
Sbjct: 272 G 272
Score = 68.0 bits (167), Expect = 1e-12
Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 57/198 (28%)
Query: 628 IEE------GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 681
++E G + ++ D+GGGT ++++ D GG +
Sbjct: 126 VDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAG 180
Query: 682 HFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 741
+ F A E K+ S + +
Sbjct: 181 SYKIPF------------------EEA-ETIKKDFSRHREIMRVV--------------- 206
Query: 742 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 801
R +E + +++ + Q + +VGG+ + + F GKE+
Sbjct: 207 -----------RPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEV 254
Query: 802 NKSINPDEAVAYGAAVQA 819
I+P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 95.7 bits (237), Expect = 2e-21
Identities = 29/257 (11%), Positives = 76/257 (29%), Gaps = 44/257 (17%)
Query: 108 EDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 167
+ + + N I K T + G + ++++ E A +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--- 161
Query: 168 TAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 227
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 162 --------ELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALS 211
Query: 228 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 287
+ ++ A + + + + I I
Sbjct: 212 LARTK------GSSYLADDIIIHRKDNNYLKQRINDENKISI------------------ 247
Query: 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELN 345
+ + +E+ + + + + ++++GG + + ++ +
Sbjct: 248 ---VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFF 302
Query: 346 KSINPDEAVAYGAAVQA 362
K+ N + G +
Sbjct: 303 KTNNSQYDLVNGMYLIG 319
Score = 72.9 bits (178), Expect = 6e-14
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
++E ++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 157 LQELDELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 214
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+ ++ A + + + + I I
Sbjct: 215 TK------GSSYLADDIIIHRKDNNYLKQRINDENKISI--------------------- 247
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI 805
+ + +E+ + + + + ++++GG + + ++ + K+
Sbjct: 248 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 305
Query: 806 NPDEAVAYGAAVQA 819
N + G +
Sbjct: 306 NSQYDLVNGMYLIG 319
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 84.7 bits (209), Expect = 1e-16
Identities = 112/636 (17%), Positives = 187/636 (29%), Gaps = 226/636 (35%)
Query: 121 LIPA--YFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGER 178
L+P +F S ++ +I+ EPT + D + +T E
Sbjct: 21 LVPTASFFIASQLQEQ----------FNKILPEPTEG---FAADDEP-TTPAEL------ 60
Query: 179 NVLIFDLG----------GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 228
V F LG G FD +L + FE + +L G D ++
Sbjct: 61 -VGKF-LGYVSSLVEPSKVGQFD-QVLNLCLTEFE------NCYLEGND-----IHALAA 106
Query: 229 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD-----FYT--- 280
+ ++ L K ++ TA AKR + + +LF V
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFG 161
Query: 281 --SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 338
T FEEL DL++ T + L + + L+ + KV F
Sbjct: 162 GQGNTDDYFEEL-RDLYQ-TYHVLVGDL----IKFSAETLSELIRTTLDAEKV------F 209
Query: 339 FNGKEL-----NKSINPDEAVAYGAAV--------QAAILHGDKSEEVQDLLLLDVTPLS 385
G + N S PD+ + Q A H V LL TP
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA--H-----YVVTAKLLGFTPGE 262
Query: 386 LGIETAG------GVMTALIKRNTTIPTKQT-QTFTTYSDNQPGVLIQV-YEGERAMTKD 437
L G G++TA+ I + ++F VL + A
Sbjct: 263 LRSYLKGATGHSQGLVTAVA-----IAETDSWESFFVSVRKAITVLFFIGVRCYEA---- 313
Query: 438 NNLLGKFELTSIPPAPRGVPQIEVTFDIDANG------ILNVTAIEKSTGKENKITITND 491
+ TS+PP+ + D N +L++
Sbjct: 314 ------YPNTSLPPS--------ILEDSLENNEGVPSPMLSI------------------ 341
Query: 492 RGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN------------SLESYCFNM-KSTV 538
L++E ++ VN + + + IS N SL + K+
Sbjct: 342 SN-LTQEQVQDYVNKTNSHLPAGK--QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 539 EDEKLKDKISDAER----------------TQILDKCNDVIKWLDANQLAEKEEFEHKQK 582
+ +I +ER + +L +D+I + K K
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN-----KDLVKNNVSFNAK 453
Query: 583 EL---------------------EAICNPIITKLYQGSGGAPGGFPGAPGAGAP------ 615
++ E I + II P + A
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL--------PVKWETTTQFKATHILDFG 505
Query: 616 PSGAPGAGP-GPTIEEGSGERNVLIFDLGGGTFDVS 650
P GA G G ++G+G R ++ GT D++
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIV-----AGTLDIN 536
Score = 64.7 bits (157), Expect = 1e-10
Identities = 59/315 (18%), Positives = 108/315 (34%), Gaps = 110/315 (34%)
Query: 732 GVDFYTSITRAR--FEELNADLFRGTME-------------PVE----------KSLRD- 765
G+D Y + A+ + AD + PV K +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNR--ADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 766 -AKMDKAQIHDIVLVGGSTRIPKV-----QKLLQDFFNGKE--LNKSIN--PDEAVAYGA 815
+ M I D G + K+ + F ++ L+ + P A+
Sbjct: 1688 YSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALT--- 1737
Query: 816 AVQAAILHGDKSEEVQDLLLLDVTP--LSLGIE-TA----GGVMT--ALIK----RNTTI 862
++ A KS+ + D T SLG E A VM+ +L++ R
Sbjct: 1738 LMEKAAFEDLKSKGLIPA---DATFAGHSLG-EYAALASLADVMSIESLVEVVFYR---- 1789
Query: 863 PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDI 922
G+ +QV A+ +D + + +I P ++ +F
Sbjct: 1790 ----------------GMTMQV-----AVPRDELGRSNYGMIAINPG-----RVAASFSQ 1823
Query: 923 DANGILNVTAIEKSTGKENKITITND--RGRRYL---NVTAIEKSTG-----KENKITIT 972
+A + V + K TG + I N ++Y+ ++ A++ T K KI I
Sbjct: 1824 EALQYV-VERVGKRTGWL--VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 973 NDRGRLSKEDIERMV 987
+ LS E++E +
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 62.8 bits (152), Expect = 6e-10
Identities = 74/421 (17%), Positives = 122/421 (28%), Gaps = 141/421 (33%)
Query: 645 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRR 704
G FD +L + FE + +L G D ++ + ++ L K ++
Sbjct: 78 GQFD-QVLNLCLTEFE------NCYLEGND-----IHALAAKLLQENDTTLVKTKELIKN 125
Query: 705 LRTACERAKRTLSSSTQASIEIDSLFEGVD-----FYT-----SITRARFEELNADLFRG 754
TA AKR + + +LF V T FEEL DL++
Sbjct: 126 YITARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-RDLYQ- 178
Query: 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-----NKSINPDE 809
T + L + + L+ + KV F G + N S PD+
Sbjct: 179 TYHVLVGDL----IKFSAETLSELIRTTLDAEKV------FTQGLNILEWLENPSNTPDK 228
Query: 810 AVAYGAAV--------QAAILHGDKSEEVQDLLLLDVTPLSLGIETAG------GVMTAL 855
+ Q A H V LL TP L G G++TA+
Sbjct: 229 DYLLSIPISCPLIGVIQLA--H-----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 856 IKRNTTIPTKQT-QTFTTYSDNQPGVLIQV-YEGERAMTKDNNLLGKFELTSIP------ 907
I + ++F VL + A + TS+P
Sbjct: 282 A-----IAETDSWESFFVSVRKAITVLFFIGVRCYEA----------YPNTSLPPSILED 326
Query: 908 --------PAP----RGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT--NDRGRRY 953
P+P + Q +V ++ N ++ I+ N G +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNK---TN-----SHLPAGKQVEISLVN--GAKN 376
Query: 954 LNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDE---------KQKAVI 1004
L V +G + + + K KA ++K
Sbjct: 377 LVV------SG--------------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 1005 S 1005
S
Sbjct: 417 S 417
Score = 50.4 bits (120), Expect = 3e-06
Identities = 54/312 (17%), Positives = 97/312 (31%), Gaps = 130/312 (41%)
Query: 275 GVDFYTSITRAR--FEELNADLFRGTME-------------PVE----------KSLRD- 308
G+D Y + A+ + AD + PV K +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNR--ADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 309 -AKMDKAQIHDIVLVGGSTRIPKV-----QKLLQDFFNGKE--LNKSIN--PDEAVAYGA 358
+ M I D G + K+ + F ++ L+ + P A+
Sbjct: 1688 YSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALT--- 1737
Query: 359 AVQAAILHGDKSEEVQDLLLLDVTP--LSLGIE-TA----GGVMT--ALIK----RNTTI 405
++ A KS+ + D T SLG E A VM+ +L++ R
Sbjct: 1738 LMEKAAFEDLKSKGLIPA---DATFAGHSLG-EYAALASLADVMSIESLVEVVFYR---- 1789
Query: 406 PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDI 465
G+ +QV A+ +D + + +I P ++ +F
Sbjct: 1790 ----------------GMTMQV-----AVPRDELGRSNYGMIAINPG-----RVAASFSQ 1823
Query: 466 DA------------NGIL-----NV-----------TAIEKSTG-----KENKITITNDR 492
+A ++ NV A++ T K KI I +
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 493 GRLSKEDIERMV 504
LS E++E +
Sbjct: 1884 KSLSLEEVEGHL 1895
Score = 45.0 bits (106), Expect = 1e-04
Identities = 53/356 (14%), Positives = 101/356 (28%), Gaps = 137/356 (38%)
Query: 236 KDLTTNKRALRRLRTACERAKRTLSSSTQASI---------EIDSLFEGV------DFYT 280
DL +A + + RA + SI + F G + Y+
Sbjct: 1633 MDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 281 SITRAR-----------FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 329
++ F+E+N T + L Q + L+ +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQFTQPA-LTLMEKA---- 1742
Query: 330 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIE 389
+ L+ I D A G H SLG E
Sbjct: 1743 -AFEDLKSKGL-------IPADATFA-G--------H------------------SLG-E 1766
Query: 390 -TA----GGVMT--ALIK----RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 438
A VM+ +L++ R G+ +QV A+ +D
Sbjct: 1767 YAALASLADVMSIESLVEVVFYR--------------------GMTMQV-----AVPRDE 1801
Query: 439 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND--RGR-- 494
+ + +I P ++ +F +A + V + K TG + I N +
Sbjct: 1802 LGRSNYGMIAINPG-----RVAASFSQEALQYV-VERVGKRTGWL--VEIVNYNVENQQY 1853
Query: 495 -LS--KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKI 547
+ ++ + N K QK I ++ ++ E+++ +
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKL----QKIDIIE----------LQKSLSLEEVEGHL 1895
Score = 43.5 bits (102), Expect = 5e-04
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 63/183 (34%)
Query: 12 EITE---------EQSLLIQTSIMDLIGDNLGQGLIKPA--------FSGIRLEEGAVML 54
EI E E+ LL T Q PA F ++ +G +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFT--------Q----PALTLMEKAAFEDLK-SKGLIPA 1755
Query: 55 YC-----SDG-YTAGWINSITGDLTPWDGARL---------KAVSAQELSRGVKAIFTA- 98
S G Y A + S+ ++ + AV EL R +
Sbjct: 1756 DATFAGHSLGEYAA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 99 PDILKKKTSEDILRKVD---GQNEGLI--PAYFNISS----VKSTKDSGTIAGLNVL-RI 148
P + S++ L+ V G+ G + +N+ + +G + L+ + +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-----AGDLRALDTVTNV 1868
Query: 149 INE 151
+N
Sbjct: 1869 LNF 1871
Score = 34.6 bits (79), Expect = 0.24
Identities = 33/148 (22%), Positives = 45/148 (30%), Gaps = 36/148 (24%)
Query: 39 KPAFSGIR-----------LEEGAVMLYCSDGYTAGWINSITGDL-TP----WDGARLKA 82
K FS R L A L D ++ D+ P +DG+ L+
Sbjct: 413 KLKFS-NRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 83 VSAQELSRGVKAIFTAPDILKKKTSEDILRKVD---GQNEGLIPAYFNISSVKSTKDSGT 139
+S R V I P + T +D G GL KD GT
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL------THRNKD-GT 523
Query: 140 IAGLNVLRIINEPTAAAIAYGLDKKVGS 167
G +R+I A + D G
Sbjct: 524 --G---VRVI---VAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 5e-14
Identities = 107/776 (13%), Positives = 200/776 (25%), Gaps = 269/776 (34%)
Query: 108 EDILRKVDGQNEGLIPAYFNISSVKSTKDS--GTIAGLNVLRIINEPTAAAIAYGL---- 161
+DIL A+ + K +D ++ + II A + L
Sbjct: 19 KDIL-------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 162 -DKKVGSTAVEY--NGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 218
K V+ N + F +S + E + + T + +
Sbjct: 72 LSK--QEEMVQKFVEEVLRIN---YK-----FLMSPIKTEQ-----RQPSMMTRMY-IEQ 115
Query: 219 DNRMVNHFVQEFKRKY----KKDLTTNKRALRRLRTA----------CERAKRTLSSSTQ 264
+R+ N Q F KY + ++AL LR A K ++
Sbjct: 116 RDRLYND-NQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVALDVC 171
Query: 265 ASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG 324
S ++ + F+ ++ E +E ++K L + D
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPET-------VLEMLQKLLYQIDPNWTSRSD-----H 219
Query: 325 STRIP----KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLD 380
S+ I +Q L+ K + +L VQ+ +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL--------------LVL--L---NVQNAKAWN 260
Query: 381 VTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN-- 438
+L + L+ TT + + T + I + +T D
Sbjct: 261 A--FNLSCKI-------LL---TT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 439 NLLGKF---ELTSIPP-APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGR 494
+LL K+ +P P ++ I +S ++ T N +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNP-------------RRLSIIAESI-RDGLATWDNWK-H 349
Query: 495 LSKEDIERMVNDAEKYKAEDEKQK-----AV------ISAKNSLESYCFNMKSTVEDE-- 541
++ + + ++ + E +K +V I L F++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVV 408
Query: 542 -KLKDKISDAERTQILDKCNDVIK----WLDANQLAEKEEFEHKQKELEAICNPIITKLY 596
KL S E+ I +L+ E E H+ I+ Y
Sbjct: 409 NKLHKY-SLVEK----QPKESTISIPSIYLELKVKLENEYALHRS---------IVDH-Y 453
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIED 656
P F PP D
Sbjct: 454 N----IPKTFD--SDDLIPPY-------------------------------------LD 470
Query: 657 G-IFEVKSTAGDTHLG--------GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 707
+ H+G E F+ + D ++ +R T
Sbjct: 471 QYFYS--------HIGHHLKNIEHPERMT---------LFRMVFL-DFRFLEQKIRHDST 512
Query: 708 ACERAKRTLSSSTQASIEIDSLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLR 764
A AS I + + + FY I ++E L + + E +
Sbjct: 513 AW-----------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 765 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 820
T + ++ L DEA+ A Q
Sbjct: 562 SK---------------YTDL--LRIALM------------AEDEAIFEEAHKQVQ 588
Score = 62.9 bits (152), Expect = 4e-10
Identities = 82/560 (14%), Positives = 153/560 (27%), Gaps = 173/560 (30%)
Query: 533 NMKSTVEDEKLKDKISDAERTQILD-KCNDVIKWLDANQLAEKEEFEH--KQKELEAICN 589
+ ++ + KD +S E + + C DV + KEE +H K+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDAVSGTL 65
Query: 590 PIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDV 649
+ L E V F +
Sbjct: 66 RLFWTL----------------------------------LSKQEEMVQKFVEEVLRINY 91
Query: 650 SILTIEDGI-FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY----KKDLTTNKRALRR 704
L I E + + T + + +R+ N Q F KY + ++AL
Sbjct: 92 KFLM--SPIKTEQRQPSMMTRMY-IEQRDRLYND-NQVF-AKYNVSRLQPYLKLRQALLE 146
Query: 705 LRTA----------CERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG 754
LR A K ++ S ++ + F+ ++ E
Sbjct: 147 LRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET------- 197
Query: 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP----KVQKLLQDFFNGKELNKSINPDEA 810
+E ++K L + D S+ I +Q L+ K +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKPYENCL----- 247
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
+L VQ+ + +L + L+ TT + +
Sbjct: 248 ---------LVL--L---NVQNAKAWNA--FNLSCKI-------LL---TT----RFKQV 277
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDN--NLLGKF---ELTSIPP-----APRGVPQIEVTF 920
T + I + +T D +LL K+ +P PR + I +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 921 DIDANGILNV---------TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITI 971
N T IE S N + R + + ++ S I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYR-KMFDRLSVFPPSA----HIPT 389
Query: 972 T------NDRGRLSKEDIERMVNDAEKY-----------------------KAEDEKQ-- 1000
D + K D+ +VN KY K E+E
Sbjct: 390 ILLSLIWFD---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1001 KAVISAKNSLESYCFNMKSK 1020
++++ N +++ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIP 466
Score = 61.8 bits (149), Expect = 1e-09
Identities = 84/605 (13%), Positives = 161/605 (26%), Gaps = 188/605 (31%)
Query: 415 TYSDNQPGVLIQVYEGERAMTKD----------NNLLGKFELTSIPPAPRGVPQIEVTFD 464
Y D ++ V+E A + ++L K E+ I + V F
Sbjct: 17 QYKD-----ILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 465 I----DANGI---------LNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 511
+ +N + E + R + + D R+ ND + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFA 127
Query: 512 AED-EKQKAVISAKNSL-----ESYCF--NM----KSTVEDEKLKDKISDAERTQILDKC 559
+ + + + + +L + K+ V + ++ K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKM 180
Query: 560 NDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGA 619
+ I WL+ L E + L+ + I S +
Sbjct: 181 DFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----------NIKLRI 227
Query: 620 PGAGPGPT--IEEGSGERNVLIFD-------LGGGTFDVS----ILTIEDGIFEVKSTAG 666
++ E +L+ F++S + T + + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 667 DTHLGGEDFDNRMVNHFVQEFKRKY----KKDL-----TTNKRAL----RRLR------- 706
TH+ + + V+ KY +DL TTN R L +R
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 707 ----TACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR--------- 753
C++ + SS ++ L + R F+ L+ +F
Sbjct: 346 NWKHVNCDKLTTIIESS------LNVL------EPAEYRKMFDRLS--VFPPSAHIPTIL 391
Query: 754 -----GTMEPVE----------KSL--RDAKMDKAQIHDI--VLVGGSTRIPKVQKLLQD 794
+ + SL + K I I L + + + D
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 795 FFNGKE--LNKSINPDEA-------VAYGAAVQAAILHGDKSEEVQDL-----LLLDVTP 840
+N + + + P + + H E + + + LD
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGH---------HLKNIEHPERMTLFRMVFLDFRF 502
Query: 841 LSLGIETAGGVMTALIKRNTTIPTKQTQTFTTY----SDNQPGVLIQVYEGERAMTKDNN 896
L I TA + + T Q Y DN P YE +
Sbjct: 503 LEQKIRHDS---TAWNASGSILNT--LQQLKFYKPYICDNDP-----KYE---RLVNA-- 547
Query: 897 LLGKF 901
+ F
Sbjct: 548 -ILDF 551
Score = 43.3 bits (101), Expect = 4e-04
Identities = 54/404 (13%), Positives = 103/404 (25%), Gaps = 142/404 (35%)
Query: 19 LLIQT---SIMD-LIGDNLGQGLIKPAFSGIRLEEGAVMLYCSDGYTAGWINSITGDL-- 72
+L+ T + D L + + +E +L +++ DL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLDCRPQDLPR 320
Query: 73 -----TP----------------WDGARLKAVSAQELSRGVKAIFTA--PDILKK----- 104
P WD K V+ +L+ +++ P +K
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 105 -------KTSEDIL----RKVDGQNEGLIPAYF-NISSVKSTKDSGTIAGLNVLRIINEP 152
+L V + ++ S V+ TI + + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKV 437
Query: 153 TAAAIAYGLDKKVGSTAVE-YNGSGERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGD 210
L + + V+ YN + DL I D +
Sbjct: 438 KLENEYA-LHRSI----VDHYNI--PKTFDSDDL--------IPPYLDQYFYS------- 475
Query: 211 THLG--------GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 262
H+G E F+ + D ++ +R TA
Sbjct: 476 -HIGHHLKNIEHPERMT---------LFRMVFL-DFRFLEQKIRHDSTAW---------- 514
Query: 263 TQASIEIDSLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDI 319
AS I + + + FY I ++E L + + E +
Sbjct: 515 -NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---------- 563
Query: 320 VLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 363
T + ++ L DEA+ A Q
Sbjct: 564 -----YTDL--LRIALM------------AEDEAIFEEAHKQVQ 588
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 66.6 bits (162), Expect = 1e-11
Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 44/232 (18%)
Query: 138 GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTI 197
+ I + + + + + +NV + D GG S+
Sbjct: 142 DKEYSFEITDITIKAEGSGVLFLEQENFK----------NKNVAVIDFGGLNMGFSLY-- 189
Query: 198 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 257
S G +D R+ + +L TN++A L +
Sbjct: 190 -RNCVVNPSERFIEEHGVKDLIIRVGD----ALTDLNNGNLITNEQAESALNNGYMKKGG 244
Query: 258 TLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH 317
+ + + I+ + ++ K + Q+
Sbjct: 245 EIDTESSTVIK------------------------KVKEKFLKDAIKLIEKRGFKLDQLD 280
Query: 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDK 369
++ +GG+T+ +++ + + + N G A + +
Sbjct: 281 SLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCEGLYKVAVAKYCIQ 329
Score = 60.8 bits (147), Expect = 7e-10
Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 34/206 (16%)
Query: 621 GAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 680
G+G +E +NV + D GG S+ S G +D R+
Sbjct: 158 GSGVLFLEQENFKNKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVG 214
Query: 681 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 740
+ +L TN++A L + + + + I+
Sbjct: 215 D----ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIK--------------- 255
Query: 741 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 800
+ ++ K + Q+ ++ +GG+T+ +++ + +
Sbjct: 256 ---------KVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNN 303
Query: 801 LNKSINPDEAVAYGAAVQAAILHGDK 826
+ N G A + +
Sbjct: 304 SIITNNSQWTTCEGLYKVAVAKYCIQ 329
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 63.6 bits (154), Expect = 8e-11
Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 42/235 (17%)
Query: 125 YFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFD 184
+ T G + N+ R+I P A L + ++ D
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQ------GIIEQQPGYGVVID 196
Query: 185 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRA 244
+G T DV + + D V + +G D + + +E DL
Sbjct: 197 VGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL------ 249
Query: 245 LRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF-YTSITRARFEELNADLFRGTMEPVE 303
Q ++ +F ++ E+L + +E +
Sbjct: 250 ------------------AQEALSHPVMFRQKQVGGPEVSGPILEDLANRI----IENIR 287
Query: 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVAYG 357
+LR + ++ VGG + + + ++ G + + A A G
Sbjct: 288 LNLRGEVDR---VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
Score = 54.4 bits (130), Expect = 1e-07
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 36/183 (19%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++ D+G T DV + + D V + +G D + + +E
Sbjct: 189 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 247
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF-YTSITRARFEELNADLF 752
DL Q ++ +F ++ E+L +
Sbjct: 248 DL------------------------AQEALSHPVMFRQKQVGGPEVSGPILEDLANRI- 282
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAV 811
+E + +LR + ++ VGG + + + ++ G + + A
Sbjct: 283 ---IENIRLNLRGEVDR---VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 334
Query: 812 AYG 814
A G
Sbjct: 335 ALG 337
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 62.4 bits (151), Expect = 3e-10
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 39/226 (17%)
Query: 147 RIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 206
+I+ +P + ++ A E + D G GT + + V+
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFT-----EGKYSVLDFGSGTTIIDTY---QNMKRVEE 209
Query: 207 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQAS 266
+ + G DF R+ + +K + T + + L + + +
Sbjct: 210 ESFVINKGTIDFYKRIAS----HVSKKSEGASITPRMIEKGLEY------KQCKLNQKTV 259
Query: 267 IEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 326
I+ + F + L M E ++ + I I++ GG
Sbjct: 260 IDF--------------KDEFYKEQDSLIEEVMSNFEITVGNI----NSIDRIIVTGGGA 301
Query: 327 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEE 372
I L ++ K+ + + G +L +E
Sbjct: 302 NI--HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
Score = 51.6 bits (123), Expect = 7e-07
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E + D G GT + + V+ + + G DF R+ + +K +
Sbjct: 183 EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFVINKGTIDFYKRIAS----HVSKKSEG 235
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
T + + L + + + I+ + F + L
Sbjct: 236 ASITPRMIEKGLEY------KQCKLNQKTVIDF--------------KDEFYKEQDSLIE 275
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
M E ++ + I I++ GG I L ++ K+ + +
Sbjct: 276 EVMSNFEITVGNI----NSIDRIIVTGGGANI--HFDSLSHYY-SDVFEKADDSQFSNVR 328
Query: 814 GAAVQAAILHGDKSEE 829
G +L +E
Sbjct: 329 GYEKLGELLKNKVEQE 344
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 292 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 348 INPDEAVAYGAAVQAAILHGDKSEE 372
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 749 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 805 INPDEAVAYGAAVQAAILHGDKSEE 829
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 47.2 bits (112), Expect = 2e-05
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 35/214 (16%)
Query: 129 SSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGG 188
+V ++ AGL + + +P A +R L+ D+G
Sbjct: 151 EAVAGVLEALRGAGLVPVVLDVKPFAGLYPL---------EARLAEEPDRVFLVLDIGAE 201
Query: 189 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL 248
+ + +L L G+DF + F +
Sbjct: 202 STSLVLL--RGDKPLA---VRVLTLSGKDFTEAIARSFNLDLLA---------------- 240
Query: 249 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR- 307
E KRT +T + + + L + + R + + + + +SL
Sbjct: 241 ---AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEF 297
Query: 308 -DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
++++A L+GG +++ + LL D
Sbjct: 298 FRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331
Score = 41.0 bits (96), Expect = 0.002
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 26/166 (15%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
+R L+ D+G + + +L L G+DF + F +
Sbjct: 190 DRVFLVLDIGAESTSLVLL--RGDKPLA---VRVLTLSGKDFTEAIARSFNLDLLA---- 240
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
E KRT +T + + + L + + R + +
Sbjct: 241 ---------------AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLV 285
Query: 754 GTMEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
+ + +SL ++++A L+GG +++ + LL D
Sbjct: 286 ELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 292 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 348 INPDEAVAYGAAVQAAI 364
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 749 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 805 INPDEAVAYGAAVQAAI 821
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 292 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 349
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 350 PDEAVAYGAAVQAAI 364
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 749 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 806
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 807 PDEAVAYGAAVQAAI 821
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 41.3 bits (98), Expect = 0.001
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 135 KDSGTIAGLNVLRIINEPTAAAIAYGLD--KKVGSTAVEYNGSGERNVLIFDLGGGTFDV 192
D+G AG + + +I EP AAAI L+ + G+ ++ D+GGGT +V
Sbjct: 115 LDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGN-------------MVVDIGGGTTEV 161
Query: 193 SILTIEDGIFEVKS--TAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
+++++ I +S AGD + D +V + + Y+
Sbjct: 162 AVISL-GSIVTWESIRIAGD------EMDEAIVQY----VRETYR 195
Score = 30.1 bits (69), Expect = 3.8
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 609 APGAGA--------PPSGAPGAG-PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIF 659
AGA P + A G+ +EE SG ++ D+GGGT +V+++++ I
Sbjct: 118 GLEAGASKVFLIEEPMAAAIGSNLN---VEEPSGN---MVVDIGGGTTEVAVISL-GSIV 170
Query: 660 EVKS--TAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
+S AGD + D +V + + Y+
Sbjct: 171 TWESIRIAGD------EMDEAIVQY----VRETYR 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.001
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 27/57 (47%)
Query: 573 EKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIE 629
EK+ K+L+A KLY A S AP T+E
Sbjct: 18 EKQAL----KKLQAS-----LKLY-----------------ADDS-APALAIKATME 47
Score = 31.5 bits (70), Expect = 0.67
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 14/43 (32%)
Query: 497 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
K+ ++++ + Y A+D SA +L +K+T+E
Sbjct: 19 KQALKKLQASLKLY-ADD-------SAP-ALA-----IKATME 47
Score = 29.9 bits (66), Expect = 2.7
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 980 KEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
K+ ++++ + Y A+D I A ++E
Sbjct: 19 KQALKKLQASLKLY-ADDSAPALAIKA--TME 47
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 39.7 bits (93), Expect = 0.005
Identities = 30/211 (14%), Positives = 61/211 (28%), Gaps = 48/211 (22%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
+ ++ + + A V +R V++ +LG + ++G
Sbjct: 180 TVKSPFQLKSSLVSTAEG-----------VLTTPEKDRGVVVVNLGYNFTGLIA--YKNG 226
Query: 201 IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT-- 258
+ + +G + D+ L ER T
Sbjct: 227 V--PIKISYVP-VGMKHVIK----------------DV---SAVLDTSFEESERLIITHG 264
Query: 259 ---LSSSTQASIEIDSLFEGVDFYTS------ITRARFEELNADLFRGTMEPVEKSLRDA 309
+ + I+ L T+ I AR E+ + VE + +
Sbjct: 265 NAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEE 323
Query: 310 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
+VL GG +IP++ +L + F
Sbjct: 324 GEIG-IPGGVVLTGGGAKIPRINELATEVFK 353
Score = 35.0 bits (81), Expect = 0.12
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
+R V++ +LG + ++G+ + +G +
Sbjct: 205 DRGVVVVNLGYNFTGLIA--YKNGV--PIKISYVP-VGMKHVIK---------------- 243
Query: 694 DLTTNKRALRRLRTACERAKRT-----LSSSTQASIEIDSLFEGVDFYTS------ITRA 742
D+ L ER T + + I+ L T+ I A
Sbjct: 244 DV---SAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHA 300
Query: 743 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
R E+ + VE + + +VL GG +IP++ +L + F
Sbjct: 301 RLREI-MSKSKKFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 353
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.010
Identities = 12/91 (13%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 501 ERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILD--- 557
+R+ + E + E+Q+ + ++ + ++ + + + + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDA------------ASKVMEQEWREKAKKDLEEWNQ 125
Query: 558 -KCNDVIKWLDANQLAEKEEFEHKQKELEAI 587
+ V K N++A+K F ++Q + + I
Sbjct: 126 RQSEQVEKNKINNRIADK-AF-YQQPDADII 154
Score = 34.4 bits (78), Expect = 0.097
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 491 DRGRLSKEDIE--RMVNDA--EKYKAEDEKQKAVI--SAKNSLESYCFNMKSTVEDEKLK 544
DR E I R ++ A + + AK LE + VE K+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 545 DKISDAERTQILDKCNDVI 563
++I+D Q D D+I
Sbjct: 138 NRIADKAFYQQPD--ADII 154
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 37.0 bits (86), Expect = 0.032
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 292 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG-STRIPKVQKLLQDFFNGKELNK 346
+++R +E R ++H++ GG + + ++ D +E+ K
Sbjct: 412 EEIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREI-K 469
Query: 347 SINPDEAVAYGAAVQAAILHGDKSEEVQDL 376
+ A GAA+ A++ G + +
Sbjct: 470 VAASKQTPALGAAMFASVAAGSEVGGYDSI 499
Score = 37.0 bits (86), Expect = 0.032
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 749 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG-STRIPKVQKLLQDFFNGKELNK 803
+++R +E R ++H++ GG + + ++ D +E+ K
Sbjct: 412 EEIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREI-K 469
Query: 804 SINPDEAVAYGAAVQAAILHGDKSEEVQDL 833
+ A GAA+ A++ G + +
Sbjct: 470 VAASKQTPALGAAMFASVAAGSEVGGYDSI 499
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 35.7 bits (83), Expect = 0.076
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 292 ADLFRGTMEPVEKSLRDA--KMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
L+R +E V + R +D G TR ++ D + +
Sbjct: 373 GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVL-QRPVQLL 431
Query: 348 INPDEAVAYGAAVQAAI 364
N A GAA AAI
Sbjct: 432 AN-PLGSAVGAAWVAAI 447
Score = 35.7 bits (83), Expect = 0.076
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 749 ADLFRGTMEPVEKSLRDA--KMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
L+R +E V + R +D G TR ++ D + +
Sbjct: 373 GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVL-QRPVQLL 431
Query: 805 INPDEAVAYGAAVQAAI 821
N A GAA AAI
Sbjct: 432 AN-PLGSAVGAAWVAAI 447
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 35.4 bits (82), Expect = 0.11
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 292 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
A + T++ + R M++ I ++ GG T+ P + + G +
Sbjct: 415 ALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAM-LL 472
Query: 348 INPDEAVAYGAAVQAAI 364
EA+ G+A+ +
Sbjct: 473 PEESEAMLLGSAMMGTV 489
Score = 35.4 bits (82), Expect = 0.11
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 749 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
A + T++ + R M++ I ++ GG T+ P + + G +
Sbjct: 415 ALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAM-LL 472
Query: 805 INPDEAVAYGAAVQAAI 821
EA+ G+A+ +
Sbjct: 473 PEESEAMLLGSAMMGTV 489
>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding
fold, collagen binding, platelet activa hemostasis,
plasma, structural protein-protein binding COMP; 2.80A
{Synthetic}
Length = 87
Score = 32.3 bits (74), Expect = 0.14
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 597 QGSGGAPG-----GFPGAPGAGAPPSGAPGAGPGPTIEEGS 632
G G PG G G PG PP P PGP G
Sbjct: 4 PGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQ 44
Score = 31.5 bits (72), Expect = 0.24
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 597 QGSGGAPG--GFPGAPGAG-APPSGAPGAGPGP 626
G G PG GFPG PG P G PG PGP
Sbjct: 39 PGPRGQPGVMGFPGPPGPPXXGPPGPPGP-PGP 70
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 34.5 bits (80), Expect = 0.20
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 292 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
++ R +E + +L D + + I GG + V++L + FN +
Sbjct: 366 PEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFN-VPIVTM 424
Query: 348 INPDEAVAYGAAVQAAI 364
++ A A
Sbjct: 425 KE-QQSGTLAAMFLARQ 440
Score = 34.5 bits (80), Expect = 0.20
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 749 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
++ R +E + +L D + + I GG + V++L + FN +
Sbjct: 366 PEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFN-VPIVTM 424
Query: 805 INPDEAVAYGAAVQAAI 821
++ A A
Sbjct: 425 KE-QQSGTLAAMFLARQ 440
>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple
helix, glycine, MAD phasing, alternative splicing,
disease mutation; 2.30A {Synthetic}
Length = 42
Score = 29.2 bits (66), Expect = 0.44
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGP 626
+G+ G G G PG PG PP G PGA PGP
Sbjct: 9 RGNRGERGSEGSPGHPGMPGPP-GPPGA-PGP 38
>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein;
2.60A {Synthetic} SCOP: k.3.1.1
Length = 56
Score = 29.7 bits (66), Expect = 0.50
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 598 GSGGAPG--GFPGAPGAGAP--PSGAPGAGPGP 626
G G PG G PG PG P P G PG+G P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIP 33
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 32.3 bits (73), Expect = 0.54
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 627
+G+ A A AGAP PG G P
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177
Score = 30.8 bits (69), Expect = 1.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
G G P G G P PP G P P
Sbjct: 180 GRGAPPPGMMGPPPGMRPPMGPPMGIPPG 208
Score = 30.8 bits (69), Expect = 2.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSG 633
GG P G GAPP G G PG G
Sbjct: 166 TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Score = 30.4 bits (68), Expect = 2.2
Identities = 11/36 (30%), Positives = 11/36 (30%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSG 633
G P G PP P GP I G G
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210
Score = 30.0 bits (67), Expect = 3.2
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
GAP +P G PP G PG
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein
synthesis, native chemical ligation; 0.98A {Synthetic}
PDB: 3boi_A 3bog_A* 3bog_C*
Length = 81
Score = 30.0 bits (68), Expect = 0.62
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 597 QGSGGAPG--GFPGAPG-AGAP--PSGAPGAG-----PGPTIEEGS 632
G G G G PG G G SG G G G +G+
Sbjct: 29 DGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPKGA 74
Score = 30.0 bits (68), Expect = 0.65
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 5/40 (12%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGA--GPGPTIEEGS 632
G G G G G PG G G PG G
Sbjct: 11 NGCPGTAGAAGSVGGPGCDGGH-GGNGGNGNPGCAGGVGG 49
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGS 632
G G GG G G G G G+ P +G+
Sbjct: 45 GGVGGAGGASGGTGVGGRG-GKGGS-GTPKGADGA 77
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 32.5 bits (74), Expect = 0.65
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDL 376
++V+VGG R + + + E+ P A GAA+ A + +EV+++
Sbjct: 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI 266
Score = 32.5 bits (74), Expect = 0.65
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 775 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDL 833
++V+VGG R + + + E+ P A GAA+ A + +EV+++
Sbjct: 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI 266
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.8 bits (71), Expect = 1.2
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGE 634
G G G G P G+ G + S
Sbjct: 333 WNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFR 370
Score = 29.8 bits (66), Expect = 5.2
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAG 623
GS G+ P + G G +P G
Sbjct: 362 GSSGSSSFRPDSSGHGNIRPSSPDWG 387
Score = 29.4 bits (65), Expect = 6.7
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGE 634
G A PG P G+ + G+ + S
Sbjct: 339 EPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSG 375
Score = 29.1 bits (64), Expect = 8.3
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAG-PGPTIEEGSGERN 636
G G G G P G+ G PG +G N
Sbjct: 281 VNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 321
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 31.8 bits (71), Expect = 1.3
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL----LQDFFNGKELNKSINPDEA--VAYG 357
++LR + H I ++ + +P ++ L ++ + +++ A VAY
Sbjct: 43 EALRAQLASGEEPHGIPVMRERSTVPDSKRFILVELSNWAADSPVTLAVDVTNAYVVAYR 102
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGV 394
Q+ L D + + LL D + +E G
Sbjct: 103 TGSQSFFLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGE 146
Score = 31.8 bits (71), Expect = 1.3
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 761 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL----LQDFFNGKELNKSINPDEA--VAYG 814
++LR + H I ++ + +P ++ L ++ + +++ A VAY
Sbjct: 43 EALRAQLASGEEPHGIPVMRERSTVPDSKRFILVELSNWAADSPVTLAVDVTNAYVVAYR 102
Query: 815 AAVQAAILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGV 851
Q+ L D + + LL D + +E G
Sbjct: 103 TGSQSFFLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGE 146
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 30.6 bits (68), Expect = 2.1
Identities = 9/30 (30%), Positives = 9/30 (30%)
Query: 598 GSGGAPGGFPGAPGAGAPPSGAPGAGPGPT 627
G G GG G P G G P
Sbjct: 37 GWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 66
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 31.1 bits (71), Expect = 2.1
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 270 DSLFEGVDFYTSITRARFEELN-------ADLFRGTMEPVEKSLRD-----AKMDKAQIH 317
D F D S +A E+ A+L R + + D A++
Sbjct: 336 DDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFS 395
Query: 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367
+ +VGG + + +L D G + P EA G +
Sbjct: 396 QLHIVGGGCQNTLLNQLCADAC-GIRV--IAGPVEASTLGNIGIQLMTLD 442
Score = 31.1 bits (71), Expect = 2.1
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 727 DSLFEGVDFYTSITRARFEELN-------ADLFRGTMEPVEKSLRD-----AKMDKAQIH 774
D F D S +A E+ A+L R + + D A++
Sbjct: 336 DDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFS 395
Query: 775 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824
+ +VGG + + +L D G + P EA G +
Sbjct: 396 QLHIVGGGCQNTLLNQLCADAC-GIRV--IAGPVEASTLGNIGIQLMTLD 442
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 2.5
Identities = 12/104 (11%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 490 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE-----KLK 544
R ++K +++++ K E + LE+ ++ ++++ L
Sbjct: 896 CYRRMMAKRELKKL-------KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Query: 545 DKISDAERTQILDKCNDVIKWLDANQLAEKE--EFEHKQKELEA 586
+K+++ E + + ++ +++E+E ++ L+
Sbjct: 949 EKMNNLE-ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 30.8 bits (70), Expect = 2.6
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPT 627
G G G GFPGA GA G GA G
Sbjct: 172 PGPTGPTGPPGFPGAVGAKGEA-GPEGA-RGSE 202
Score = 30.8 bits (70), Expect = 2.9
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 597 QGSGGAPG--GFPGAPGA-GAP-PSGAPGAGPGPTIEEGS 632
G G PG GFPGA G G P+G G+ PGP +GS
Sbjct: 322 PGERGGPGSRGFPGADGVAGPKGPAGERGS-PGPAGPKGS 360
Score = 30.5 bits (69), Expect = 3.4
Identities = 11/39 (28%), Positives = 11/39 (28%), Gaps = 4/39 (10%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPTIEEGSG 633
G G PG G PG P G P G
Sbjct: 1015 AGPPGPPGPPGPPGPPSGGYDL-SFLPQ-PPQQKAHDKG 1051
Score = 30.5 bits (69), Expect = 3.9
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 597 QGSGGAPG--GFPGAPGA-GAP-PSGAPGAGPGPTIEEG 631
+G G PG GF G PGA G P G PG G + G
Sbjct: 640 RGEPGPPGPAGFAGPPGADGQPGAKGEPGD-AGAKGDAG 677
Score = 29.7 bits (67), Expect = 6.7
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 597 QGSGGAPG--GFPGAPGA-GAP-PSGAPGA--GPGPTIEEG 631
G GA G GFPG G G P P+G GA PG +G
Sbjct: 508 PGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548
Score = 29.3 bits (66), Expect = 7.6
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 596 YQGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPTIEEGSG 633
G G G G G+PG P G+PG G E G
Sbjct: 336 ADGVAGPKGPAGERGSPGPAGPK-GSPGE-AGRPGEAGLP 373
Score = 29.3 bits (66), Expect = 8.1
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPTIEEG 631
+G G PG G G G G PG GP E G
Sbjct: 436 RGVPGPPGAVGPAGKDGEAGAQ-GPPG-PAGPAGERG 470
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B
Length = 1026
Score = 30.8 bits (70), Expect = 2.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 597 QGSGGAPG--GFPGAPGA-GAP-PSGAPGAGPGPTIEEGS 632
G G PG G PGA G G P+G+ G GP G
Sbjct: 315 PGLRGNPGSRGLPGADGVAGVMGPAGSRGT-SGPAGVRGP 353
Score = 29.7 bits (67), Expect = 5.9
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPTIEEG 631
+G G G G PG GA G+ G GP G
Sbjct: 135 RGLPGERGRVGAPGPAGARGSD-GSVGP-VGPAGPIG 169
Score = 29.3 bits (66), Expect = 7.8
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 597 QGSGGAPG--GFPGAPG-AGAP-PSGAPGAGPGPTIEEG 631
+G G G GF G PG AG +G PG G E G
Sbjct: 462 KGEQGPAGPPGFQGLPGPAGPAGEAGKPGE-RGLHGEFG 499
Score = 28.9 bits (65), Expect = 9.9
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 597 QGSGGAPG--GFPGAPGAGAPPSGAPGAGPGPT 627
+G G G GF G GA P GA G G
Sbjct: 633 RGEPGPVGPSGFAGPAGAAGQP-GAKGE-RGTK 663
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 30.2 bits (68), Expect = 3.0
Identities = 36/256 (14%), Positives = 80/256 (31%), Gaps = 39/256 (15%)
Query: 107 SEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 166
+ R + E +++ +T + ++E + A+
Sbjct: 38 TSGPARSISEVLENAHMKKEDMAFTLATGYGRNSLEGIADKQMSELSCHAMG-------- 89
Query: 167 STAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 226
A + + D+GG DV ++ +E+G + D F
Sbjct: 90 --ASFIWPNVH---TVIDIGGQ--DVKVIHVENGTMT--------NFQMNDKCAAGTGRF 134
Query: 227 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR 286
+ + + L ++ + ++ S+ ++ +S I++
Sbjct: 135 LDVMANILEVKV-------SDLAELGAKSTKRVAISSTCTVFAES--------EVISQLS 179
Query: 287 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
D+ G V + + D+V+ GG + V+ L++ G E+
Sbjct: 180 KGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKT 238
Query: 347 SINPDEAVAYGAAVQA 362
S A GAA+ A
Sbjct: 239 SPLAQYNGALGAALYA 254
Score = 29.8 bits (67), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 775 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 819
D+V+ GG + V+ L++ G E+ S A GAA+ A
Sbjct: 211 DVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYA 254
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 28.8 bits (64), Expect = 3.2
Identities = 5/69 (7%), Positives = 12/69 (17%), Gaps = 2/69 (2%)
Query: 580 KQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLI 639
+++ A I + GG P ++ +
Sbjct: 47 YLEDVIAHKQAIPFRR--YCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAE 104
Query: 640 FDLGGGTFD 648
Sbjct: 105 VKGLDVDTL 113
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 28.1 bits (63), Expect = 3.6
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 619 APGAGPGP---TIEEGSG-ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 672
AG + +L+ +G + VS L + G + + G H+ G
Sbjct: 24 CSKAGNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGHEHIPG 81
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 28.7 bits (64), Expect = 6.1
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 23/99 (23%)
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTF--------D 648
G GAP APG + G ++ + + + L G+
Sbjct: 37 YGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGSGRTYQLREGSNIIGRGQDAQ 96
Query: 649 VSI-----------LTIEDGIFEVK---STAGDTHLGGE 673
+ + + + + ST G T +
Sbjct: 97 FRLPDTGVSRRHLEIRWDGQVALLADLNSTNG-TTVNNA 134
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 6.8
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 30/83 (36%)
Query: 877 QPGVLIQV-YEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEK 935
G+ IQV Y E K+N++ + +PP R V+ +E
Sbjct: 115 SVGMAIQVNYSSE---VKENSVDSD-DKAKVPPLIR--------I---------VSGLEL 153
Query: 936 STGKENKITITNDRGRRYLNVTA 958
S T +G+++L +
Sbjct: 154 SD--------TKQKGKKFLVIAY 168
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 29.0 bits (65), Expect = 9.6
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 352 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIETAGGVMTALIKRNTTIPTK 408
V + + +H + E ++ +L L ++ + A+ + + P +
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMKKS-DFKRAISEAHLIKPAR 326
Query: 409 QT 410
T
Sbjct: 327 YT 328
Score = 29.0 bits (65), Expect = 9.6
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIETAGGVMTALIKRNTTIPTK 865
V + + +H + E ++ +L L ++ + A+ + + P +
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMKKS-DFKRAISEAHLIKPAR 326
Query: 866 QT 867
T
Sbjct: 327 YT 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,538,219
Number of extensions: 1017891
Number of successful extensions: 2887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2724
Number of HSP's successfully gapped: 160
Length of query: 1023
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 920
Effective length of database: 3,825,930
Effective search space: 3519855600
Effective search space used: 3519855600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.9 bits)