RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6736
(1023 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 270 bits (692), Expect = 3e-85
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 236 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 295
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 296 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 355
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 356 YGAAVQAAIL 365
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
Score = 270 bits (692), Expect = 3e-85
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 813 YGAAVQAAIL 822
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 259 bits (663), Expect = 6e-81
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 176 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 231
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 232 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 287
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 348 INPDEAVAYGAAVQAAIL 365
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
Score = 259 bits (663), Expect = 6e-81
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 633 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 744
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 805 INPDEAVAYGAAVQAAIL 822
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 237 bits (606), Expect = 2e-73
Identities = 145/159 (91%), Positives = 153/159 (96%)
Query: 370 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 429
SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 430 GERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 489
GERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITIT
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 490 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528
ND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
Score = 223 bits (569), Expect = 3e-68
Identities = 145/185 (78%), Positives = 153/185 (82%), Gaps = 26/185 (14%)
Query: 827 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 886
SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 887 GERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 946
GERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI------------------- 101
Query: 947 NDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 1006
LNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 102 -------LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 154
Query: 1007 KNSLE 1011
KNSLE
Sbjct: 155 KNSLE 159
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 182 bits (462), Expect = 3e-54
Identities = 77/117 (65%), Positives = 89/117 (76%)
Query: 377 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 436
LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 437 DNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 493
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
Score = 182 bits (462), Expect = 3e-54
Identities = 77/117 (65%), Positives = 89/117 (76%)
Query: 834 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 893
LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 894 DNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 950
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 164 bits (415), Expect = 7e-48
Identities = 56/115 (48%), Positives = 74/115 (64%)
Query: 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 438
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 439 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 493
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
Score = 164 bits (415), Expect = 7e-48
Identities = 56/115 (48%), Positives = 74/115 (64%)
Query: 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 895
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 896 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 950
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 136 bits (345), Expect = 8e-39
Identities = 58/83 (69%), Positives = 70/83 (84%)
Query: 523 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 582
+ LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QK
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 583 ELEAICNPIITKLYQGSGGAPGG 605
ELE +CNPIITKLYQ +GG PGG
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
Score = 30.5 bits (69), Expect = 0.16
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 1006 AKNSLESYCFNMKSK 1020
+ LESY FNMK+
Sbjct: 2 GSHMLESYAFNMKAT 16
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 121 bits (304), Expect = 5e-32
Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 19/207 (9%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+EE ++ D+GGGT +V+++++ + + G++ D +V + + +
Sbjct: 3 VEE---PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETY 54
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+ + + + + + ++ L G+ ++ E
Sbjct: 55 RVAIGERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREA 109
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+ +E V +L + I L GG + + + LLQ G + +S
Sbjct: 110 LRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRS 168
Query: 805 INPDEAVAYGAAVQAAILHGDKSEEVQ 831
P AVA GA + + + +++Q
Sbjct: 169 EEPLTAVAKGAGMVLDKV--NILKKLQ 193
Score = 121 bits (304), Expect = 5e-32
Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
+ + + + ++ L G+ ++ E +
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 115
Query: 297 GTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 353
+E V +L + I L GG + + + LLQ G + +S P A
Sbjct: 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 174
Query: 354 VAYGAAVQAAILHGDKSEEVQ 374
VA GA + + + +++Q
Sbjct: 175 VAKGAGMVLDKV--NILKKLQ 193
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 103 bits (257), Expect = 4e-26
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 354
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 355 AYGAAVQA 362
G +
Sbjct: 155 VNGMYLIG 162
Score = 103 bits (257), Expect = 4e-26
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 811
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 812 AYGAAVQA 819
G +
Sbjct: 155 VNGMYLIG 162
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 88.6 bits (220), Expect = 1e-21
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 554
L++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 58
Query: 555 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPI 591
I + L +K E K +EL + +
Sbjct: 59 IESALTALETALKGE---DKAAIEAKMQELAQVSQKL 92
Score = 54.0 bits (130), Expect = 1e-09
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
L++++I++MV DAE D K + ++ +N + + +
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 42
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 86.3 bits (213), Expect = 3e-20
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 355
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 356 YG 357
G
Sbjct: 152 LG 153
Score = 86.3 bits (213), Expect = 3e-20
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 812
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 813 YG 814
G
Sbjct: 152 LG 153
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 78.8 bits (194), Expect = 3e-18
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 554
L+ +I M+ D+ Y +D K + + K ++ + + +S AER
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQV 58
Query: 555 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599
I D + + + + + E K ++ + S
Sbjct: 59 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
Score = 49.1 bits (117), Expect = 9e-08
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
L+ +I M+ D+ Y +D K + + K ++
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHG 42
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 71.2 bits (174), Expect = 1e-14
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 164
+PAYFN + ++TKD+G IAGL V RIINEPTAAA+AYGLDK
Sbjct: 140 VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 69.3 bits (169), Expect = 5e-14
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 16/86 (18%)
Query: 90 RGVKAIFTAPDILKKKTSEDILRKVDGQNEGL-----------IPAYFNISSVKSTKDSG 138
+G F ++ S +L K+ E +PAYFN S ++TKD+G
Sbjct: 105 KGETKSFYPEEV-----SSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159
Query: 139 TIAGLNVLRIINEPTAAAIAYGLDKK 164
TIAGLNVLRIINEPTAAAIAYGLDKK
Sbjct: 160 TIAGLNVLRIINEPTAAAIAYGLDKK 185
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 52.4 bits (125), Expect = 1e-08
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLD 162
+P ++ D+G AG + + +I EP AAAI G +
Sbjct: 99 VPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 34.1 bits (77), Expect = 0.060
Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 39/256 (15%)
Query: 108 EDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 167
R + E +++ +T + ++E + A+
Sbjct: 38 SGPARSISEVLENAHMKKEDMAFTLATGYGRNSLEGIADKQMSELSCHAMGASFIWPNVH 97
Query: 168 TAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 227
T ++ G DV ++ +E+G D G F+
Sbjct: 98 TVID---------------IGGQDVKVIHVENGTMTNFQM-NDKCAAGTG-------RFL 134
Query: 228 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 287
+ + E ++ +S V I++
Sbjct: 135 DVMANILEVKV----------SDLAELGAKSTKRVAISSTCTVFAESEV-----ISQLSK 179
Query: 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
D+ G V + + D+V+ GG + V+ L++ G E+ S
Sbjct: 180 GTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTS 238
Query: 348 INPDEAVAYGAAVQAA 363
A GAA+ A
Sbjct: 239 PLAQYNGALGAALYAY 254
Score = 34.1 bits (77), Expect = 0.060
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 739 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 798
I++ D+ G V + + D+V+ GG + V+ L++ G
Sbjct: 174 ISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-G 232
Query: 799 KELNKSINPDEAVAYGAAVQAA 820
E+ S A GAA+ A
Sbjct: 233 VEIKTSPLAQYNGALGAALYAY 254
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 30.8 bits (69), Expect = 0.65
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 478 KSTGKENKI-TITNDRG--RLSKEDIERMVNDAEKYKAEDEKQK 518
+S GK ++ + D+ L+ E+IE+ V + EK K E+EK+K
Sbjct: 199 QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKK 242
Score = 30.8 bits (69), Expect = 0.65
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 961 KSTGKENKI-TITNDRG--RLSKEDIERMVNDAEKYKAEDEKQK 1001
+S GK ++ + D+ L+ E+IE+ V + EK K E+EK+K
Sbjct: 199 QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKK 242
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 30.4 bits (67), Expect = 1.0
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 930 VTAIEKSTGKENKITITNDR----GRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIER 985
V A+EK++GK+ + R Y N + ++ G + + E
Sbjct: 281 VQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGL--------DRMCED 332
Query: 986 MVN 988
+
Sbjct: 333 LWR 335
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 29.4 bits (66), Expect = 1.1
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 587 ICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTI 628
I I++ ++ S A G AP AP A
Sbjct: 3 IFGKIMSAIFGDSAAASPGGAQAPATTGAAGTAPTAPQPTAA 44
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium
laminosum [TaxId: 32059]}
Length = 62
Score = 27.7 bits (62), Expect = 1.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 473 VTAIEKSTGKENKITITNDRGRLSKEDIER----MVNDAEKYKAED 514
+TAI K+ ++ I + G + I +V++ E+ A
Sbjct: 11 ITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGA 56
Score = 27.7 bits (62), Expect = 1.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 956 VTAIEKSTGKENKITITNDRGRLSKEDIER----MVNDAEKYKAED 997
+TAI K+ ++ I + G + I +V++ E+ A
Sbjct: 11 ITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGA 56
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.5 bits (66), Expect = 2.6
Identities = 10/63 (15%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 494 RLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED-EKLKDKISDAER 552
+L+ + E+++++ ++ + + ++ + + L M+ E+ E ++++ D R
Sbjct: 436 KLTGLEHEKLLDEYKELLDQIAELLRILGSADRL------MEVIREELELVREQFGDKRR 489
Query: 553 TQI 555
T+I
Sbjct: 490 TEI 492
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 27.9 bits (61), Expect = 3.9
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
+ ++ ++ A K KA+ + K + F ST
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDST 56
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
maritima [TaxId: 2336]}
Length = 152
Score = 27.9 bits (61), Expect = 4.5
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
S E+I +++ +++ K E+ + K + F +ST
Sbjct: 16 FSPEEIRYLLDISKQVKMENRSKLRTERFKGMTLAMIFEKRST 58
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 27.4 bits (60), Expect = 4.8
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525
S++++E + +KY + ++S K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
Score = 27.4 bits (60), Expect = 4.8
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKN 1008
S++++E + +KY + ++S K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 28.3 bits (62), Expect = 5.2
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 499 DIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDK 558
D + M A+ ++ + V+SA T L + + ER + LD
Sbjct: 14 DFDAMNRSADIVLSDANVRLVVLSAS---------AGITNLLVALAEGLEPGERFEKLDA 64
Query: 559 CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599
++ + E ++ LE I S
Sbjct: 65 IRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATS 105
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis
[TaxId: 1423]}
Length = 112
Score = 27.1 bits (60), Expect = 5.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 492 RGRLSKEDIERMVNDAEKYKAEDEKQKA 519
LSKE+ E ++ ++ E QKA
Sbjct: 34 DKGLSKEEGEAVMRICDELSEELATQKA 61
Score = 27.1 bits (60), Expect = 5.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 975 RGRLSKEDIERMVNDAEKYKAEDEKQKA 1002
LSKE+ E ++ ++ E QKA
Sbjct: 34 DKGLSKEEGEAVMRICDELSEELATQKA 61
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 27.5 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
SKEDIE ++ AE+ + E +++ + AK + + F ST
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPST 55
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 24.9 bits (55), Expect = 7.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 484 NKITITNDRGRLSKEDIERMVN 505
+ T GR+ KEDI+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFLA 41
Score = 24.9 bits (55), Expect = 7.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 967 NKITITNDRGRLSKEDIERMVN 988
+ T GR+ KEDI+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFLA 41
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.0 bits (59), Expect = 8.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQ 517
LS++D+ ++ A K KA + +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
Score = 27.0 bits (59), Expect = 8.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQ 1000
LS++D+ ++ A K KA + +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,669,659
Number of extensions: 180303
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 61
Length of query: 1023
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 929
Effective length of database: 1,116,976
Effective search space: 1037670704
Effective search space used: 1037670704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.8 bits)